Query psy8055
Match_columns 139
No_of_seqs 121 out of 1084
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:14:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u34_A CRFR2B, corticotropin r 98.3 4.2E-07 1.4E-11 63.2 3.7 36 5-40 78-113 (119)
2 2l27_A Seven transmembrane hel 98.0 2E-06 6.9E-11 56.2 2.5 32 4-35 51-82 (84)
3 4ers_A GL-R, glucagon receptor 98.0 2.8E-06 9.4E-11 56.9 2.5 28 5-32 62-95 (96)
4 2qkh_A Glucose-dependent insul 97.8 6.5E-06 2.2E-10 58.3 2.1 32 4-35 86-119 (135)
5 3c5t_A Glucagon-like peptide 1 97.7 1.8E-05 6.1E-10 55.1 3.2 36 3-38 66-110 (122)
6 3h3g_A Fusion protein of malto 97.5 5.9E-05 2E-09 63.1 3.3 34 3-36 481-521 (539)
7 2xdg_A Growth hormone-releasin 96.6 0.00043 1.5E-08 45.7 0.8 31 4-34 52-83 (92)
8 2x57_A Vasoactive intestinal p 96.5 0.00049 1.7E-08 47.4 0.5 31 3-34 77-110 (116)
9 2jod_A Pituitary adenylate cyc 96.3 0.0026 8.7E-08 43.0 2.9 29 4-33 66-98 (106)
10 3n7s_A Calcitonin gene-related 96.2 0.0028 9.5E-08 43.5 3.0 21 3-23 74-94 (115)
11 2z73_A Rhodopsin; visual pigme 90.9 2.2 7.4E-05 33.6 10.1 63 75-137 63-130 (448)
12 3rze_A Histamine H1 receptor, 89.6 4.1 0.00014 31.7 10.5 85 53-137 15-103 (452)
13 3eml_A Human adenosine A2A rec 88.2 6.1 0.00021 30.9 10.7 86 51-136 26-113 (488)
14 4dkl_A MU-type opioid receptor 87.4 8.4 0.00029 29.9 11.0 80 58-137 29-111 (464)
15 3uon_A Human M2 muscarinic ace 86.1 10 0.00036 29.4 11.0 73 65-137 42-118 (467)
16 2rh1_A Beta-2-adrenergic recep 85.5 9.4 0.00032 30.6 10.7 71 65-135 59-133 (500)
17 3vw7_A Proteinase-activated re 85.2 9.9 0.00034 29.8 10.5 84 52-135 26-113 (484)
18 3sn6_R Lysozyme, beta-2 adrene 85.0 6.5 0.00022 31.6 9.5 86 50-135 186-275 (514)
19 4amj_A Beta-1 adrenergic recep 82.8 3.7 0.00013 30.0 6.6 88 49-136 14-105 (315)
20 4ea3_A Fusion protein of nocic 82.8 9.7 0.00033 29.8 9.4 63 75-137 154-219 (434)
21 1u19_A Rhodopsin; G protein-co 82.2 13 0.00045 27.5 12.4 62 75-136 67-132 (349)
22 4eiy_A Adenosine receptor A2A/ 80.9 17 0.00058 28.0 10.1 69 66-134 51-121 (447)
23 1bl1_A Parathyroid hormone rec 79.2 0.37 1.3E-05 25.3 -0.1 18 43-60 14-31 (31)
24 3pbl_A D(3) dopamine receptor, 79.0 14 0.00047 28.9 9.1 61 75-135 67-132 (481)
25 3odu_A C-X-C chemokine recepto 76.4 18 0.00062 28.4 9.2 62 75-136 77-140 (502)
26 2lnl_A C-X-C chemokine recepto 72.0 26 0.00088 25.5 12.4 69 66-134 31-101 (296)
27 3v2y_A Sphingosine 1-phosphate 71.9 37 0.0013 27.3 10.9 78 55-132 72-152 (520)
28 2ehf_A CUB and sushi domain-co 71.6 2.1 7.1E-05 25.8 1.9 19 6-24 44-62 (73)
29 2ks9_A Substance-P receptor; w 71.5 29 0.001 25.9 12.9 62 75-136 61-126 (364)
30 4dlq_A Latrophilin-1; GAIN dom 68.5 2.6 9E-05 33.6 2.4 27 7-33 50-78 (381)
31 2yra_A Seizure 6-like protein 63.2 2.3 7.8E-05 25.6 0.8 24 8-33 42-65 (74)
32 4grv_A Neurotensin receptor ty 57.0 74 0.0025 25.5 10.3 22 114-135 109-130 (510)
33 1gkn_A Complement receptor typ 53.0 5.7 0.0002 26.3 1.5 17 8-24 41-57 (128)
34 1srz_A Gamma-aminobutyric acid 52.8 3.2 0.00011 24.6 0.2 18 6-24 43-60 (68)
35 3tvj_A Mannan-binding lectin s 47.2 5.5 0.00019 24.7 0.7 15 9-23 46-61 (86)
36 2a55_A C4B-binding protein; co 47.1 6.8 0.00023 26.3 1.2 23 7-32 40-62 (133)
37 4dlo_A Brain-specific angiogen 43.3 5.9 0.0002 31.7 0.5 19 19-37 337-363 (382)
38 3gov_A MAsp-1; complement, ser 36.5 13 0.00044 25.2 1.3 24 10-33 115-141 (155)
39 3erb_A Complement C2; C3/C5 co 34.5 13 0.00045 26.9 1.1 19 6-24 161-179 (223)
40 2qy0_A Complement C1R subcompo 33.7 18 0.00062 24.7 1.7 20 11-32 49-68 (159)
41 3lb6_C IL-13, interleukin-13 r 27.7 22 0.00077 27.7 1.4 13 16-28 316-328 (380)
42 2jp3_A FXYD domain-containing 27.5 89 0.003 18.9 3.8 36 44-80 9-44 (67)
43 2kr6_A Presenilin-1; protease, 27.1 39 0.0013 24.4 2.5 37 51-87 113-151 (176)
44 3o8e_B Membrane cofactor prote 26.2 22 0.00075 26.1 1.1 19 6-24 166-184 (252)
45 1qub_A Protein (human BETA2-gl 24.6 26 0.0009 26.8 1.3 24 6-32 219-242 (319)
46 2zxe_G FXYD10, phospholemman-l 23.2 73 0.0025 19.7 2.9 33 50-83 17-49 (74)
47 2aty_A Complement receptor chi 23.1 25 0.00085 27.2 0.9 27 5-32 102-128 (376)
48 2wii_C H factor 1, complement 22.9 25 0.00085 26.4 0.8 19 6-24 169-187 (277)
49 3r62_A H factor 1, complement 22.8 17 0.00059 23.8 -0.1 17 6-23 40-56 (129)
50 1q90_L Cytochrome B6F complex 21.4 98 0.0033 16.0 3.2 26 49-76 2-27 (32)
51 2yby_A Complement factor H; im 21.3 23 0.00078 23.2 0.3 23 6-32 41-66 (124)
No 1
>1u34_A CRFR2B, corticotropin releasing factor receptor 2; beta sheets and loops, signaling protein; NMR {Mus musculus} SCOP: g.76.1.1 PDB: 2jnd_A* 2jnc_A
Probab=98.30 E-value=4.2e-07 Score=63.17 Aligned_cols=36 Identities=39% Similarity=0.617 Sum_probs=31.3
Q ss_pred ccCCCCceeeeCCCCCcccCCCCccccccCCCCccc
Q psy8055 5 FYLNAENASKWCNANGSWNSFANYSLCTDIKKTTQD 40 (139)
Q Consensus 5 ~~~~~~~~~r~C~~~G~W~~~~~yt~C~~~~~~~~~ 40 (139)
.||+.++++|.|++||+|+.|.||+.|.-..+..++
T Consensus 78 ~~~~~g~vsR~C~~nG~W~~~~nys~C~~~~~~~~~ 113 (119)
T 1u34_A 78 KYNTTRNAYRECLENGTWASRVNYSHCEPILDDKQR 113 (119)
T ss_dssp CCCCCCCCCCBCCTTSCCCSCCCCCSSSCCSSCCCC
T ss_pred ccCCCCeeecCCCCCCcCCCCCChhHhcCccccccc
Confidence 389999999999999999999999999987665433
No 2
>2l27_A Seven transmembrane helix receptor; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=98.03 E-value=2e-06 Score=56.24 Aligned_cols=32 Identities=41% Similarity=0.698 Sum_probs=28.0
Q ss_pred cccCCCCceeeeCCCCCcccCCCCccccccCC
Q psy8055 4 FFYLNAENASKWCNANGSWNSFANYSLCTDIK 35 (139)
Q Consensus 4 ~~~~~~~~~~r~C~~~G~W~~~~~yt~C~~~~ 35 (139)
+++|+.++++|.|++||+|..++||++|....
T Consensus 51 ~~~~~~~~~~R~C~~~G~W~~~~ny~~C~~~~ 82 (84)
T 2l27_A 51 VRYNTTNNGYRECLANGSWAARVNYSECQEIL 82 (84)
T ss_dssp BCCCCSSCCBCCEETTTEECSCCCGGGSCCCC
T ss_pred cccCcCCceecCCCCCCcCCCcCCHHHHhhhc
Confidence 35678999999999999999999999997643
No 3
>4ers_A GL-R, glucagon receptor; class-B GPCR, FAB, glycosylation, extra-C immune system; HET: NAG; 2.64A {Homo sapiens}
Probab=97.99 E-value=2.8e-06 Score=56.94 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=24.5
Q ss_pred ccCCCCceeeeCCCCCccc------CCCCccccc
Q psy8055 5 FYLNAENASKWCNANGSWN------SFANYSLCT 32 (139)
Q Consensus 5 ~~~~~~~~~r~C~~~G~W~------~~~~yt~C~ 32 (139)
.+|++++|+|.|++||+|. +|+|||+|+
T Consensus 62 ~~~~~~~a~R~C~~~G~W~~~~~~~~wsnYs~C~ 95 (96)
T 4ers_A 62 HKVQHRFVFKRCGPDGQWVRGPRGQPWRDASQCQ 95 (96)
T ss_dssp TTSTTCEEEEEECTTSCBCBCTTSCBCCBCTTTC
T ss_pred ccCCccceeeecCCCCeEeCCCCCCCCcCccccc
Confidence 3478999999999999994 489999996
No 4
>2qkh_A Glucose-dependent insulinotropic polypeptide receptor; GPCR, incretin, hormone-GPCR complex, extracellular domain, ligand binding domain, ECD; HET: QKH; 1.90A {Homo sapiens}
Probab=97.82 E-value=6.5e-06 Score=58.34 Aligned_cols=32 Identities=16% Similarity=0.433 Sum_probs=28.2
Q ss_pred cccC--CCCceeeeCCCCCcccCCCCccccccCC
Q psy8055 4 FFYL--NAENASKWCNANGSWNSFANYSLCTDIK 35 (139)
Q Consensus 4 ~~~~--~~~~~~r~C~~~G~W~~~~~yt~C~~~~ 35 (139)
.+|+ +.++++|.|++||+|..|+||+.|.-+.
T Consensus 86 ~~~~~~~~g~vsR~C~~dG~W~~~~nys~C~~~~ 119 (135)
T 2qkh_A 86 PWHHHVAAGFVLRQCGSDGQWGLWRDHTQCENPE 119 (135)
T ss_dssp TTHHHHTTCEEEEEECTTSCBCSCCBCGGGSCCC
T ss_pred cCcccCCCceEeccCCCCCCCCCCCCcccccCcc
Confidence 4555 8999999999999999999999998765
No 5
>3c5t_A Glucagon-like peptide 1 receptor; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} PDB: 3c59_A* 3iol_A*
Probab=97.73 E-value=1.8e-05 Score=55.11 Aligned_cols=36 Identities=22% Similarity=0.522 Sum_probs=28.3
Q ss_pred ccccC--CCCceeeeCCCCCccc-------CCCCccccccCCCCc
Q psy8055 3 LFFYL--NAENASKWCNANGSWN-------SFANYSLCTDIKKTT 38 (139)
Q Consensus 3 ~~~~~--~~~~~~r~C~~~G~W~-------~~~~yt~C~~~~~~~ 38 (139)
+.+|+ +.++++|.|++||+|. .|+||+.|.-+.+..
T Consensus 66 ~~~~~~~~~~~~~R~C~~~G~W~~~~~~~~~w~ny~~C~~~~~~~ 110 (122)
T 3c5t_A 66 LPWASSVPQGHVYRFCTAEGLWLQKDNSSLPWRDLSECEESKRGE 110 (122)
T ss_dssp STTGGGCTTCEEEEEECTTSSBCCSSTTCCCCCBCGGGCSCCC--
T ss_pred hhCccccccceEecCCCCCCccccCCCCCCCCCCHHHhcCCCCCC
Confidence 34566 8999999999999993 369999999876554
No 6
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=97.46 E-value=5.9e-05 Score=63.09 Aligned_cols=34 Identities=32% Similarity=0.771 Sum_probs=29.2
Q ss_pred ccccCCCCceeeeCCCCCccc-------CCCCccccccCCC
Q psy8055 3 LFFYLNAENASKWCNANGSWN-------SFANYSLCTDIKK 36 (139)
Q Consensus 3 ~~~~~~~~~~~r~C~~~G~W~-------~~~~yt~C~~~~~ 36 (139)
+.+|+++++++|.|+++|+|. +|+|||+|.....
T Consensus 481 ~~~~~~~~~~~r~C~~~g~w~~~~~~~~~~~~y~~c~~~~~ 521 (539)
T 3h3g_A 481 IYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLT 521 (539)
T ss_dssp CTTSCTTCEEEEEBCTTSCBCBCTTSSSBCCBCTTTTTTCC
T ss_pred hccCCcCCceEeecCCCcccccCCCCCCCCCChhhccCCCC
Confidence 467899999999999999995 4899999987643
No 7
>2xdg_A Growth hormone-releasing hormone receptor; signaling protein, membrane protein; 1.95A {Homo sapiens}
Probab=96.64 E-value=0.00043 Score=45.72 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=23.9
Q ss_pred cccC-CCCceeeeCCCCCcccCCCCccccccC
Q psy8055 4 FFYL-NAENASKWCNANGSWNSFANYSLCTDI 34 (139)
Q Consensus 4 ~~~~-~~~~~~r~C~~~G~W~~~~~yt~C~~~ 34 (139)
.+|+ +.++++|.|+++|-|..++||++|...
T Consensus 52 ~~~~~~~~~v~R~C~~~GW~~~~~~y~~~C~~ 83 (92)
T 2xdg_A 52 SHFSSESGAVKRDCTITGWSEPFPPYPVACPV 83 (92)
T ss_dssp GGTCSSCCCEEEEEETTEECCCBSCHHHHSCC
T ss_pred ccccccCCeEecCCCcccCCCCcCCccccccc
Confidence 3455 679999999999944578899877654
No 8
>2x57_A Vasoactive intestinal polypeptide receptor 2; G-protein coupled receptor, circadian rhythm, MALE reproduct hormone binding, growth, transducer; 2.10A {Homo sapiens}
Probab=96.53 E-value=0.00049 Score=47.40 Aligned_cols=31 Identities=29% Similarity=0.700 Sum_probs=23.6
Q ss_pred ccccC-CCCceeeeCCCCCccc-CCCCcc-ccccC
Q psy8055 3 LFFYL-NAENASKWCNANGSWN-SFANYS-LCTDI 34 (139)
Q Consensus 3 ~~~~~-~~~~~~r~C~~~G~W~-~~~~yt-~C~~~ 34 (139)
+.+|+ ++++++|.|+++| |+ +++||+ .|.-+
T Consensus 77 ~~~~~~~~g~v~R~C~~~G-Ws~~~p~y~~~C~~~ 110 (116)
T 2x57_A 77 FSNFYSKAGNISKNCTSDG-WSETFPDFVDACGYS 110 (116)
T ss_dssp GGGGBSSCCEEEEEEETTE-ECCCBSCHHHHHTBC
T ss_pred ccCccCCCCeEEeeCCccc-CCCCCCCchhhcCCC
Confidence 34666 8999999999999 96 577865 56443
No 9
>2jod_A Pituitary adenylate cyclase-activating polypeptide type I receptor; protein/peptide complex, signaling protein; NMR {Homo sapiens} SCOP: g.76.1.1
Probab=96.28 E-value=0.0026 Score=43.01 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=20.8
Q ss_pred cccCC---CCceeeeCCCCCccc-CCCCcccccc
Q psy8055 4 FFYLN---AENASKWCNANGSWN-SFANYSLCTD 33 (139)
Q Consensus 4 ~~~~~---~~~~~r~C~~~G~W~-~~~~yt~C~~ 33 (139)
.+|++ .++++|.|+++| |+ .+++|++|..
T Consensus 66 ~~~~~~~~~g~v~R~C~~~G-Ws~~~~~y~~~C~ 98 (106)
T 2jod_A 66 RIFNPDQDMGVVSRNCTEDG-WSEPFPHYFDACG 98 (106)
T ss_dssp CCCSCCSCCSCEEECBCSSC-BCCCSSCCSSCSC
T ss_pred cCCCCcCcCCeEEecCCccc-CCCCCCCchhhhC
Confidence 45555 569999999999 95 5777655443
No 10
>3n7s_A Calcitonin gene-related peptide type 1 receptor; GPCR, class B GPCR, antagonist, olcegepant, telcagepant, MIG membrane protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_A* 3n7p_A* 3aqf_B
Probab=96.24 E-value=0.0028 Score=43.51 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=19.3
Q ss_pred ccccCCCCceeeeCCCCCccc
Q psy8055 3 LFFYLNAENASKWCNANGSWN 23 (139)
Q Consensus 3 ~~~~~~~~~~~r~C~~~G~W~ 23 (139)
+.+||++++++|.|+++|+|.
T Consensus 74 ~~~f~~~g~v~R~C~~~G~W~ 94 (115)
T 3n7s_A 74 FQDFDPSEKVTKICDQDGNWF 94 (115)
T ss_dssp STTCCTTSEEEEEBCTTSCBC
T ss_pred hcCCCCCCcEEeecCCCCCcc
Confidence 567899999999999999996
No 11
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=90.94 E-value=2.2 Score=33.65 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=36.0
Q ss_pred hhccccchhhHHHHHHHHHHHHHHH-H--HHhhhhhcc--cCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy8055 75 KDLRCLRNKIHTNLMCTYILADFMW-I--LTMTVQMSV--QSNFACVILYIFLHYCHLTNFFWMFVEG 137 (139)
Q Consensus 75 r~lr~~~~~Ih~nL~~slll~~l~f-l--i~~~~~~~~--~~~~~C~~~a~~lhy~~la~f~Wmlveg 137 (139)
|++|+..+.+..||+++=++..+.. + ......... .....|++.+.+...+..++...+.+-+
T Consensus 63 ~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is 130 (448)
T 2z73_A 63 KSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMIS 130 (448)
T ss_dssp STTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677778777766554432 1 001011011 1123899999888888887777666544
No 12
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=89.58 E-value=4.1 Score=31.66 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=44.4
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh--hhhcc--cCCchhHHHHHHHHHHHHH
Q psy8055 53 YSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMT--VQMSV--QSNFACVILYIFLHYCHLT 128 (139)
Q Consensus 53 ~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~--~~~~~--~~~~~C~~~a~~lhy~~la 128 (139)
..+-+.+++++=++.++++...|++|+..+....||+++=++..+..+.... ..... ..+..|++.+.+...+..+
T Consensus 15 ~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 94 (452)
T 3rze_A 15 LSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTA 94 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHHHHHHHHH
Confidence 3333334443334444444443556666677778887776555332221111 11011 1123899999888887777
Q ss_pred HHHHHHHhh
Q psy8055 129 NFFWMFVEG 137 (139)
Q Consensus 129 ~f~Wmlveg 137 (139)
+...+..-+
T Consensus 95 s~~~l~~is 103 (452)
T 3rze_A 95 SIFSVFILC 103 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555443
No 13
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=88.19 E-value=6.1 Score=30.93 Aligned_cols=86 Identities=12% Similarity=0.169 Sum_probs=44.6
Q ss_pred HhhhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh--hhcccCCchhHHHHHHHHHHHHH
Q psy8055 51 MIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTV--QMSVQSNFACVILYIFLHYCHLT 128 (139)
Q Consensus 51 ~i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~~--~~~~~~~~~C~~~a~~lhy~~la 128 (139)
++..+-+.+++++=++.++++..-+++|+..+....||+++=++..+..+..... .........|++.+.+...+..+
T Consensus 26 ~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 105 (488)
T 3eml_A 26 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQS 105 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 3333334444444344444444445566666677777777655543322211111 10111223999999888777776
Q ss_pred HHHHHHHh
Q psy8055 129 NFFWMFVE 136 (139)
Q Consensus 129 ~f~Wmlve 136 (139)
+..-+.+-
T Consensus 106 s~~~l~~i 113 (488)
T 3eml_A 106 SIFSLLAI 113 (488)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555443
No 14
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=87.37 E-value=8.4 Score=29.89 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh-hh--hcccCCchhHHHHHHHHHHHHHHHHHHH
Q psy8055 58 TLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMT-VQ--MSVQSNFACVILYIFLHYCHLTNFFWMF 134 (139)
Q Consensus 58 ~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~-~~--~~~~~~~~C~~~a~~lhy~~la~f~Wml 134 (139)
.+++++=++.++++..-+++|+..+....||+++=++..+....... .. ........|++.+.+...+..++...+.
T Consensus 29 ~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~ 108 (464)
T 4dkl_A 29 VVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLC 108 (464)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333455655567777777776554433211111 11 0112234999999888777777766555
Q ss_pred Hhh
Q psy8055 135 VEG 137 (139)
Q Consensus 135 veg 137 (139)
.-+
T Consensus 109 ~is 111 (464)
T 4dkl_A 109 TMS 111 (464)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 15
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=86.08 E-value=10 Score=29.42 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh--hhhc--ccCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy8055 65 IIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMT--VQMS--VQSNFACVILYIFLHYCHLTNFFWMFVEG 137 (139)
Q Consensus 65 ~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~--~~~~--~~~~~~C~~~a~~lhy~~la~f~Wmlveg 137 (139)
++.++++..-|++|+..+....||+++=++..++.+.... .... ...+..|++.+.+...+..++...+..-+
T Consensus 42 ~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is 118 (467)
T 3uon_A 42 ILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIIS 118 (467)
T ss_dssp HHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333456655567777777766555433221111 1101 11223899999887777777666555433
No 16
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=85.51 E-value=9.4 Score=30.62 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH---HHhhhh-hcccCCchhHHHHHHHHHHHHHHHHHHHH
Q psy8055 65 IIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWI---LTMTVQ-MSVQSNFACVILYIFLHYCHLTNFFWMFV 135 (139)
Q Consensus 65 ~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fl---i~~~~~-~~~~~~~~C~~~a~~lhy~~la~f~Wmlv 135 (139)
++.++++...|++|+..+.+..||+++=++..+..+ +..... .+......|++.+.+...+..++..-+.+
T Consensus 59 ~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~Si~~l~~ 133 (500)
T 2rh1_A 59 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCV 133 (500)
T ss_dssp HHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333355666566777888777544433211 111111 01111238998887776666655544433
No 17
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=85.22 E-value=9.9 Score=29.77 Aligned_cols=84 Identities=13% Similarity=0.104 Sum_probs=42.4
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh--hhh--cccCCchhHHHHHHHHHHHH
Q psy8055 52 IYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMT--VQM--SVQSNFACVILYIFLHYCHL 127 (139)
Q Consensus 52 i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~--~~~--~~~~~~~C~~~a~~lhy~~l 127 (139)
+..+-+.+++++=++.++++..-|++|+..+....||+++=++..+....... ... +......|++...+...+..
T Consensus 26 ~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 105 (484)
T 3vw7_A 26 VYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCRFVTAAFYCNMY 105 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHhHHHHHHHHHHH
Confidence 33333344444434444444444566665667777777765554322111111 100 11122399999887777766
Q ss_pred HHHHHHHH
Q psy8055 128 TNFFWMFV 135 (139)
Q Consensus 128 a~f~Wmlv 135 (139)
++..-+..
T Consensus 106 ~S~~~l~~ 113 (484)
T 3vw7_A 106 ASILLMTV 113 (484)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66544443
No 18
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=84.96 E-value=6.5 Score=31.64 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=44.1
Q ss_pred HHhhhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH---HHhhhh-hcccCCchhHHHHHHHHHH
Q psy8055 50 TMIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWI---LTMTVQ-MSVQSNFACVILYIFLHYC 125 (139)
Q Consensus 50 ~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fl---i~~~~~-~~~~~~~~C~~~a~~lhy~ 125 (139)
.++..+-+.+++++=++.+.+....|++|+..+.+..||+++=++..+..+ +..... .....+..|++.+.+...+
T Consensus 186 ~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~l~~~~ 265 (514)
T 3sn6_R 186 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLC 265 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhHHHHHHHH
Confidence 333333344444433344434444455666667788888877655433211 111111 1112234899998877777
Q ss_pred HHHHHHHHHH
Q psy8055 126 HLTNFFWMFV 135 (139)
Q Consensus 126 ~la~f~Wmlv 135 (139)
..++..-+..
T Consensus 266 ~~~S~~~l~~ 275 (514)
T 3sn6_R 266 VTASIETLCV 275 (514)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666554444
No 19
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=82.84 E-value=3.7 Score=29.99 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=44.3
Q ss_pred hHHhhhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH---HHHHhhhh-hcccCCchhHHHHHHHHH
Q psy8055 49 TTMIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFM---WILTMTVQ-MSVQSNFACVILYIFLHY 124 (139)
Q Consensus 49 l~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~---fli~~~~~-~~~~~~~~C~~~a~~lhy 124 (139)
+.++..+-..+++++=++.+.+...-|++|+..+....||+++=++..+. +.+..... ....++..|+..+.+.+.
T Consensus 14 ~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~ 93 (315)
T 4amj_A 14 MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVL 93 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHHHHHHHH
Confidence 33444444444444434444444333455555566777777665544321 11111111 011122389999988888
Q ss_pred HHHHHHHHHHHh
Q psy8055 125 CHLTNFFWMFVE 136 (139)
Q Consensus 125 ~~la~f~Wmlve 136 (139)
+..++...+..-
T Consensus 94 ~~~~S~~~l~~i 105 (315)
T 4amj_A 94 CVTASIETLCVI 105 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776655543
No 20
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=82.79 E-value=9.7 Score=29.81 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=33.4
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHhh-hhhcc--cCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy8055 75 KDLRCLRNKIHTNLMCTYILADFMWILTMT-VQMSV--QSNFACVILYIFLHYCHLTNFFWMFVEG 137 (139)
Q Consensus 75 r~lr~~~~~Ih~nL~~slll~~l~fli~~~-~~~~~--~~~~~C~~~a~~lhy~~la~f~Wmlveg 137 (139)
|++|+..+....||+++=++..+....... ..... .....|++...+.+.+..++..-+.+-+
T Consensus 154 ~~l~~~~~~ll~~LAvsDll~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is 219 (434)
T 4ea3_A 154 TKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMS 219 (434)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCchhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555567777777766554211111110 01011 1123899998888887777666555433
No 21
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=82.16 E-value=13 Score=27.49 Aligned_cols=62 Identities=21% Similarity=0.117 Sum_probs=32.2
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHhh--hhhc--ccCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy8055 75 KDLRCLRNKIHTNLMCTYILADFMWILTMT--VQMS--VQSNFACVILYIFLHYCHLTNFFWMFVE 136 (139)
Q Consensus 75 r~lr~~~~~Ih~nL~~slll~~l~fli~~~--~~~~--~~~~~~C~~~a~~lhy~~la~f~Wmlve 136 (139)
|++|+..+....||+++=++..+..+.... .... ...+..|+..+.+.+.+..++..-+..-
T Consensus 67 ~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~i 132 (349)
T 1u19_A 67 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL 132 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544456667777665554433211111 0001 1112389999888777776666554443
No 22
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=80.85 E-value=17 Score=28.00 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhc--ccCCchhHHHHHHHHHHHHHHHHHHH
Q psy8055 66 IAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTVQMS--VQSNFACVILYIFLHYCHLTNFFWMF 134 (139)
Q Consensus 66 ~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~~~~~--~~~~~~C~~~a~~lhy~~la~f~Wml 134 (139)
+.++++..-|++|+..+....||+++=++..+..+-....... ......|++...+...+..++..-+.
T Consensus 51 ~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~ 121 (447)
T 4eiy_A 51 LVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLL 121 (447)
T ss_dssp HHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334566656677777777665554322211111101 11223899998877776665544333
No 23
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=79.22 E-value=0.37 Score=25.26 Aligned_cols=18 Identities=33% Similarity=0.635 Sum_probs=15.5
Q ss_pred cchhhhhHHhhhhhhHhH
Q psy8055 43 EPGIEITTMIYSVGYTLS 60 (139)
Q Consensus 43 ~~~~~~l~~i~~vG~~lS 60 (139)
++..++|.+++.||+++|
T Consensus 14 ~e~FeRL~~iYTVGYSis 31 (31)
T 1bl1_A 14 REVFDRLGMIYTVGYSVC 31 (31)
T ss_dssp HHHHHSSHHHHHHHHHCC
T ss_pred HHHHhheeeEEEEeeeeC
Confidence 466788999999999986
No 24
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=79.02 E-value=14 Score=28.90 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=31.2
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHH---hhhhhc--ccCCchhHHHHHHHHHHHHHHHHHHHH
Q psy8055 75 KDLRCLRNKIHTNLMCTYILADFMWILT---MTVQMS--VQSNFACVILYIFLHYCHLTNFFWMFV 135 (139)
Q Consensus 75 r~lr~~~~~Ih~nL~~slll~~l~fli~---~~~~~~--~~~~~~C~~~a~~lhy~~la~f~Wmlv 135 (139)
|++|+..+....||+++=++..+..+.. ...... ......|++...+...+..++..-+..
T Consensus 67 ~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ 132 (481)
T 3pbl_A 67 RALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCA 132 (481)
T ss_dssp STTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 4455545666677776655443322211 111101 112238999988777766665544433
No 25
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=76.43 E-value=18 Score=28.37 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=31.4
Q ss_pred hhccccchhhHHHHHHHHHHHHHHH--HHHhhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy8055 75 KDLRCLRNKIHTNLMCTYILADFMW--ILTMTVQMSVQSNFACVILYIFLHYCHLTNFFWMFVE 136 (139)
Q Consensus 75 r~lr~~~~~Ih~nL~~slll~~l~f--li~~~~~~~~~~~~~C~~~a~~lhy~~la~f~Wmlve 136 (139)
|++|+..+....||+++=++..+.. .+......+...+..|++.+.+...+..++..-+..-
T Consensus 77 ~~l~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~i 140 (502)
T 3odu_A 77 KKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFI 140 (502)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455445566677766654432111 1111111011112279999988887777766555443
No 26
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=72.02 E-value=26 Score=25.50 Aligned_cols=69 Identities=12% Similarity=0.195 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh--hhhcccCCchhHHHHHHHHHHHHHHHHHHH
Q psy8055 66 IAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMT--VQMSVQSNFACVILYIFLHYCHLTNFFWMF 134 (139)
Q Consensus 66 ~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~--~~~~~~~~~~C~~~a~~lhy~~la~f~Wml 134 (139)
+.+.+....|++|+..+....||+++=++..+....... ...+...+..|+..+.+...+..++..-+.
T Consensus 31 lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~ 101 (296)
T 2lnl_A 31 LVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLA 101 (296)
T ss_dssp HHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHHHhhccCCCccchhHHHHHhhhhhhhHHHHHHHHH
Confidence 334444444667777788888888876554332211111 111112234999998877766666554443
No 27
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=71.91 E-value=37 Score=27.29 Aligned_cols=78 Identities=9% Similarity=-0.019 Sum_probs=38.8
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhh---cccCCchhHHHHHHHHHHHHHHHH
Q psy8055 55 VGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTVQM---SVQSNFACVILYIFLHYCHLTNFF 131 (139)
Q Consensus 55 vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~~~~---~~~~~~~C~~~a~~lhy~~la~f~ 131 (139)
+-+.+++++=++.+++....|++|+..+....||+++=++..+..+....... .......|+....+...+..++..
T Consensus 72 ~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~S~~ 151 (520)
T 3v2y_A 72 LICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVALSASVF 151 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHccccceeeCccccchHHHHHHHHHHHHHH
Confidence 33334444334444444444556665667777877776555443322111100 111223898887766665555543
Q ss_pred H
Q psy8055 132 W 132 (139)
Q Consensus 132 W 132 (139)
=
T Consensus 152 ~ 152 (520)
T 3v2y_A 152 S 152 (520)
T ss_dssp H
T ss_pred H
Confidence 3
No 28
>2ehf_A CUB and sushi domain-containing protein 1; CUB and sushi multiple domains protein 1, CSMD1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.57 E-value=2.1 Score=25.79 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=15.3
Q ss_pred cCCCCceeeeCCCCCcccC
Q psy8055 6 YLNAENASKWCNANGSWNS 24 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~ 24 (139)
|.-.+...+.|.++|+|+.
T Consensus 44 y~L~G~~~~~C~~~g~Ws~ 62 (73)
T 2ehf_A 44 FELVGERVITCQQNNQWSG 62 (73)
T ss_dssp CCBCSCSEEEBCSSSSBSS
T ss_pred CEEeCCCeEEECCCCeECC
Confidence 5556778999999999964
No 29
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=71.48 E-value=29 Score=25.89 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=32.7
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHH---Hhhhhh-cccCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy8055 75 KDLRCLRNKIHTNLMCTYILADFMWIL---TMTVQM-SVQSNFACVILYIFLHYCHLTNFFWMFVE 136 (139)
Q Consensus 75 r~lr~~~~~Ih~nL~~slll~~l~fli---~~~~~~-~~~~~~~C~~~a~~lhy~~la~f~Wmlve 136 (139)
|++|+..+....||+++=++..+..+. ...... ....+..|+..+.+...+..++...+..-
T Consensus 61 ~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~i 126 (364)
T 2ks9_A 61 KRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAV 126 (364)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445555567777777665544322111 111110 11122389999887777776666555443
No 30
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding domain, autoproteolysis, A-latrotoxin, extracellular domain; HET: NAG; 1.85A {Rattus norvegicus}
Probab=68.51 E-value=2.6 Score=33.64 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=22.7
Q ss_pred CCCCceeeeCCC-CCcccC-CCCcccccc
Q psy8055 7 LNAENASKWCNA-NGSWNS-FANYSLCTD 33 (139)
Q Consensus 7 ~~~~~~~r~C~~-~G~W~~-~~~yt~C~~ 33 (139)
++.|.++|.|.. +|.|.. +++++.|..
T Consensus 50 ~~~g~a~r~C~~~~g~W~~~~p~~~~C~s 78 (381)
T 4dlq_A 50 GTRGIASFQCLPALGLWNPRGPDLSNCTS 78 (381)
T ss_dssp TCBSEEEEEBCTTTCSBCTTCCBCTTCBC
T ss_pred CCCceEEEEecCCCCEeecCCCchhhcCc
Confidence 467899999985 799985 899999985
No 31
>2yra_A Seizure 6-like protein isoform 3; disulfide bond, sushi domain, SCR, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.20 E-value=2.3 Score=25.63 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=16.4
Q ss_pred CCCceeeeCCCCCcccCCCCcccccc
Q psy8055 8 NAENASKWCNANGSWNSFANYSLCTD 33 (139)
Q Consensus 8 ~~~~~~r~C~~~G~W~~~~~yt~C~~ 33 (139)
-.+..++.|..+|+|+. .-..|..
T Consensus 42 L~G~~~~~C~~~g~Ws~--~~P~C~~ 65 (74)
T 2yra_A 42 IVGSDTLTCQWDLSWSS--DPPFCEK 65 (74)
T ss_dssp EESCSEEEBCTTSCBSS--CCCEEEE
T ss_pred ECCCCceEECCCCEECC--CCCEEee
Confidence 34667899999999964 2235553
No 32
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=57.04 E-value=74 Score=25.46 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy8055 114 ACVILYIFLHYCHLTNFFWMFV 135 (139)
Q Consensus 114 ~C~~~a~~lhy~~la~f~Wmlv 135 (139)
.|++...+...+..++..-+..
T Consensus 109 ~C~~~~~~~~~~~~~S~~~l~~ 130 (510)
T 4grv_A 109 GCRGYYFLRDACTYATALNVAS 130 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988777777666554443
No 33
>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1
Probab=52.96 E-value=5.7 Score=26.31 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.4
Q ss_pred CCCceeeeCCCCCcccC
Q psy8055 8 NAENASKWCNANGSWNS 24 (139)
Q Consensus 8 ~~~~~~r~C~~~G~W~~ 24 (139)
-.+...+.|..+|+|+.
T Consensus 41 l~G~~~~~C~~~g~Ws~ 57 (128)
T 1gkn_A 41 YGRPFSITCLDNLVWSS 57 (128)
T ss_dssp ESCCEEEEBCSSSCBCC
T ss_pred cCCCCceEECCCCcCCC
Confidence 46778999999999974
No 34
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B) receptor, CIS-trans isomerization, CCP module, sushi domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB: 1ss2_A
Probab=52.77 E-value=3.2 Score=24.58 Aligned_cols=18 Identities=17% Similarity=0.654 Sum_probs=12.8
Q ss_pred cCCCCceeeeCCCCCcccC
Q psy8055 6 YLNAENASKWCNANGSWNS 24 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~ 24 (139)
|.=.|..++.|. +|+|+.
T Consensus 43 y~L~G~~~~~C~-~g~Ws~ 60 (68)
T 1srz_A 43 FHLVGSSRSVCS-QGQWST 60 (68)
T ss_dssp EEECSCCEEEEE-TTEESS
T ss_pred CEEeCCCcCEEC-CCEEeC
Confidence 334567788888 899964
No 35
>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens}
Probab=47.20 E-value=5.5 Score=24.70 Aligned_cols=15 Identities=33% Similarity=0.760 Sum_probs=12.0
Q ss_pred CCc-eeeeCCCCCccc
Q psy8055 9 AEN-ASKWCNANGSWN 23 (139)
Q Consensus 9 ~~~-~~r~C~~~G~W~ 23 (139)
.+. ....|..+|+|+
T Consensus 46 ~g~~~~~~C~~~G~Ws 61 (86)
T 3tvj_A 46 KVNDGKYVCDADGFWT 61 (86)
T ss_dssp CSSCCEEEECTTSSEE
T ss_pred cCCCCEEEECCCCCCC
Confidence 344 688999999997
No 36
>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens}
Probab=47.06 E-value=6.8 Score=26.30 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=17.3
Q ss_pred CCCCceeeeCCCCCcccCCCCccccc
Q psy8055 7 LNAENASKWCNANGSWNSFANYSLCT 32 (139)
Q Consensus 7 ~~~~~~~r~C~~~G~W~~~~~yt~C~ 32 (139)
...+..++.|.++|+|+. -..|.
T Consensus 40 ~l~G~~~~~C~~~G~Ws~---~p~C~ 62 (133)
T 2a55_A 40 RSHSTQTLTCNSDGEWVY---NTFCI 62 (133)
T ss_dssp SCCSCCCCEECSSSSEEC---CCCSE
T ss_pred ccCCCCEEEECCCCeECC---CCcCc
Confidence 445778899999999976 34564
No 37
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS motif, autoproteolytic fold, extra signaling protein; HET: NAG FUL; 2.30A {Homo sapiens}
Probab=43.32 E-value=5.9 Score=31.70 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=14.6
Q ss_pred CCcccC--------CCCccccccCCCC
Q psy8055 19 NGSWNS--------FANYSLCTDIKKT 37 (139)
Q Consensus 19 ~G~W~~--------~~~yt~C~~~~~~ 37 (139)
.|.|++ ++++|+|+|+|..
T Consensus 337 ~g~Ws~~GC~~~~~~~~~t~C~C~Hlt 363 (382)
T 4dlo_A 337 LGTWSTQGCKTVLTDASHTKCLCDRLS 363 (382)
T ss_dssp TCEEECTTEEEEEEETTEEEEEESSCS
T ss_pred CCCccccccEEEEeCCCEEEEECCCCc
Confidence 478963 6789999999743
No 38
>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_A
Probab=36.48 E-value=13 Score=25.22 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=17.7
Q ss_pred CceeeeCCCCCcccCC---CCcccccc
Q psy8055 10 ENASKWCNANGSWNSF---ANYSLCTD 33 (139)
Q Consensus 10 ~~~~r~C~~~G~W~~~---~~yt~C~~ 33 (139)
+...+.|.++|+|+.. ..-..|.-
T Consensus 115 G~~~~~C~~~G~Ws~~~~~~~~P~C~~ 141 (155)
T 3gov_A 115 NTGIYTCSAQGVWMNKVLGRSLPTCLP 141 (155)
T ss_dssp CCCEEEECTTSCEEBTTTBTSCCCEEE
T ss_pred CCceEEECCCCeECCCcCCCCCCcCCC
Confidence 6778999999999642 25667764
No 39
>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi domain, human complement system, complement second component C2; 1.80A {Homo sapiens}
Probab=34.51 E-value=13 Score=26.92 Aligned_cols=19 Identities=21% Similarity=0.646 Sum_probs=14.6
Q ss_pred cCCCCceeeeCCCCCcccC
Q psy8055 6 YLNAENASKWCNANGSWNS 24 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~ 24 (139)
|.-.+...++|.++|+|+.
T Consensus 161 y~l~G~~~~~C~~~G~Ws~ 179 (223)
T 3erb_A 161 LVLTGSSERECQGNGVWSG 179 (223)
T ss_dssp CEEESCSEEEBCTTSCBSS
T ss_pred CEEcCCCceEECCCCeECC
Confidence 4445667899999999964
No 40
>2qy0_A Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens}
Probab=33.67 E-value=18 Score=24.71 Aligned_cols=20 Identities=20% Similarity=0.730 Sum_probs=14.4
Q ss_pred ceeeeCCCCCcccCCCCccccc
Q psy8055 11 NASKWCNANGSWNSFANYSLCT 32 (139)
Q Consensus 11 ~~~r~C~~~G~W~~~~~yt~C~ 32 (139)
..++.|.++|+|+. ....|.
T Consensus 49 s~~~~C~~~G~Ws~--~~p~C~ 68 (159)
T 2qy0_A 49 SFTAVCQDDGTWHR--AMPRCK 68 (159)
T ss_dssp CCEEEBCTTSCBSS--CCCEEE
T ss_pred eeEEECCCCCcCcC--CCCccc
Confidence 47899999999964 234554
No 41
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=27.69 E-value=22 Score=27.74 Aligned_cols=13 Identities=23% Similarity=1.004 Sum_probs=9.8
Q ss_pred CCCCCcccCCCCc
Q psy8055 16 CNANGSWNSFANY 28 (139)
Q Consensus 16 C~~~G~W~~~~~y 28 (139)
|.+.|.|+.|+.-
T Consensus 316 ~~~~g~WSeWS~~ 328 (380)
T 3lb6_C 316 CSDDGIWSEWSDK 328 (380)
T ss_dssp TCSSCCCCCCCCC
T ss_pred CCCCCCCCCCCCC
Confidence 5677889888764
No 42
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=27.53 E-value=89 Score=18.92 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=16.4
Q ss_pred chhhhhHHhhhhhhHhHHHHHHHHHHHHHHhhhcccc
Q psy8055 44 PGIEITTMIYSVGYTLSLIALIIAVWIFVYFKDLRCL 80 (139)
Q Consensus 44 ~~~~~l~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~ 80 (139)
++.-.-+.+-..|..+..+..++.+++..+ ++.||.
T Consensus 9 pF~YDY~tLRigGLifA~vLfi~GI~iilS-~kcrCk 44 (67)
T 2jp3_A 9 PFYYDWESLQLGGLIFGGLLCIAGIALALS-GKCKCR 44 (67)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CcccchHHheecchhhHHHHHHHHHHHHHc-Cccccc
Confidence 333333444445555554444444444443 444443
No 43
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=27.08 E-value=39 Score=24.39 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=23.4
Q ss_pred HhhhhhhHhHH-HHHHHHHHHHHHhhh-ccccchhhHHH
Q psy8055 51 MIYSVGYTLSL-IALIIAVWIFVYFKD-LRCLRNKIHTN 87 (139)
Q Consensus 51 ~i~~vG~~lSl-~~L~~tii~~~~~r~-lr~~~~~Ih~n 87 (139)
..+.+.|.+++ ++|.+|++.+..+|+ +...+..|...
T Consensus 113 ~~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALPiSI~lG 151 (176)
T 2kr6_A 113 WNTTIACFVAILIGLCLTLLLLAIFKKALPALPISITFG 151 (176)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSSSCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcHHHHHH
Confidence 34556666665 678888888888764 44455555443
No 44
>3o8e_B Membrane cofactor protein; short consensus repeat, complement control protein, fiber KN virus-receptor interaction, cell adhesion-immunity complex; HET: NAG; 2.84A {Homo sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M*
Probab=26.21 E-value=22 Score=26.15 Aligned_cols=19 Identities=16% Similarity=0.590 Sum_probs=15.1
Q ss_pred cCCCCceeeeCCCCCcccC
Q psy8055 6 YLNAENASKWCNANGSWNS 24 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~ 24 (139)
|.-.+...+.|.++|+|+.
T Consensus 166 y~l~G~~~~~C~~~G~Ws~ 184 (252)
T 3o8e_B 166 FSLIGESTIYCGDNSVWSR 184 (252)
T ss_dssp CEEESCSEEEBCTTSSBSS
T ss_pred eEEeCCCceEECCCCeECC
Confidence 5555678899999999964
No 45
>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat, sushi, complement control protein, N glycosylation, multi-domain, membrane adhesion; HET: NAG MAN; 2.70A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A
Probab=24.56 E-value=26 Score=26.80 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=17.6
Q ss_pred cCCCCceeeeCCCCCcccCCCCccccc
Q psy8055 6 YLNAENASKWCNANGSWNSFANYSLCT 32 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~~~~yt~C~ 32 (139)
|.-.|...+.|.++|+|+. . ..|.
T Consensus 219 y~l~G~~~~~C~~~G~Ws~-~--P~C~ 242 (319)
T 1qub_A 219 YSLDGPEEIECTKLGNWSA-M--PSCK 242 (319)
T ss_dssp EEESSCSEEEBCTTSSBSC-C--CCEE
T ss_pred CEECCCCCeEECCCCcCCC-C--CCcc
Confidence 4456777899999999975 2 4565
No 46
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=23.22 E-value=73 Score=19.68 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=11.4
Q ss_pred HHhhhhhhHhHHHHHHHHHHHHHHhhhccccchh
Q psy8055 50 TMIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNK 83 (139)
Q Consensus 50 ~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~ 83 (139)
+.+-..|..+..+..++.+++..+ ++.||..++
T Consensus 17 ~tLRigGLifA~vLfi~GI~iilS-~kcrCk~~q 49 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIILLA-GKCRCKFNQ 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-TC-------
T ss_pred HHheeccchhHHHHHHHHHHHHHc-CccccCCCC
Confidence 333444554444444444444333 567776553
No 47
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=23.07 E-value=25 Score=27.15 Aligned_cols=27 Identities=30% Similarity=0.689 Sum_probs=18.3
Q ss_pred ccCCCCceeeeCCCCCcccCCCCccccc
Q psy8055 5 FYLNAENASKWCNANGSWNSFANYSLCT 32 (139)
Q Consensus 5 ~~~~~~~~~r~C~~~G~W~~~~~yt~C~ 32 (139)
.|.-.|...+.|.++|+|+.. ....|.
T Consensus 102 gy~l~G~~~~~C~~~g~Ws~~-~~p~C~ 128 (376)
T 2aty_A 102 NFSMNGNKSVWCQANNMWGPT-RLPTCV 128 (376)
T ss_pred CCEECCCcCeEECCCCEECCC-CCCEeE
Confidence 345567788999999999641 234555
No 48
>2wii_C H factor 1, complement factor H; immune system, sushi, secreted, polymorphism, glycoprotein, complement system, complement pathway, immune response; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2rlp_A 2rlq_A
Probab=22.92 E-value=25 Score=26.38 Aligned_cols=19 Identities=21% Similarity=0.625 Sum_probs=14.5
Q ss_pred cCCCCceeeeCCCCCcccC
Q psy8055 6 YLNAENASKWCNANGSWNS 24 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~ 24 (139)
|.-.|...+.|..+|+|+.
T Consensus 169 y~L~G~~~~~C~~~G~Ws~ 187 (277)
T 2wii_C 169 YKIEGDEEMHCSDDGFWSK 187 (277)
T ss_dssp EEEESCSEEEBCTTSSBSS
T ss_pred ccCcCCCCCEECCCCeECC
Confidence 3344677899999999974
No 49
>3r62_A H factor 1, complement factor H; immunity, repeating sushi domain, regulator of C activation, C3D, immune system; 1.52A {Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A 3kxv_A 3kzj_A 2xqw_C
Probab=22.76 E-value=17 Score=23.77 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=12.8
Q ss_pred cCCCCceeeeCCCCCccc
Q psy8055 6 YLNAENASKWCNANGSWN 23 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~ 23 (139)
|.-.+...+.|. +|+|+
T Consensus 40 y~l~G~~~~~C~-~g~Ws 56 (129)
T 3r62_A 40 YQLEGNKRITCR-NGQWS 56 (129)
T ss_dssp CEEESCSEEEEE-TTEEC
T ss_pred CEeCCCCeeEcC-CCcCC
Confidence 334466788999 99997
No 50
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=21.35 E-value=98 Score=15.96 Aligned_cols=26 Identities=23% Similarity=0.352 Sum_probs=15.8
Q ss_pred hHHhhhhhhHhHHHHHHHHHHHHHHhhh
Q psy8055 49 TTMIYSVGYTLSLIALIIAVWIFVYFKD 76 (139)
Q Consensus 49 l~~i~~vG~~lSl~~L~~tii~~~~~r~ 76 (139)
+.+++|.|..++ ++.+|...|.-+.|
T Consensus 2 ~tiisYf~fL~~--al~~t~~lfiGL~K 27 (32)
T 1q90_L 2 LTITSYVGLLIG--ALVFTLGIYLGLLK 27 (32)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 356777777655 44555666666644
No 51
>2yby_A Complement factor H; immune system, complement regulation, innate immunity, infec; 1.58A {Mus musculus}
Probab=21.32 E-value=23 Score=23.16 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=16.0
Q ss_pred cCCCCc---eeeeCCCCCcccCCCCccccc
Q psy8055 6 YLNAEN---ASKWCNANGSWNSFANYSLCT 32 (139)
Q Consensus 6 ~~~~~~---~~r~C~~~G~W~~~~~yt~C~ 32 (139)
|.-.+. .++.|.++| |+.. ..|.
T Consensus 41 y~l~g~~~~~~~~C~~~g-Ws~~---p~C~ 66 (124)
T 2yby_A 41 FSPPSGYSWDYLRCTAQG-WEPE---VPCV 66 (124)
T ss_dssp EECTTCSSCEEEEEETTE-EESS---SCCE
T ss_pred CEeCCCCCccEEEecCCC-ccCC---Ccee
Confidence 444455 889999999 9762 4564
Done!