RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8055
(139 letters)
>2qkh_A Glucose-dependent insulinotropic polypeptide receptor; GPCR,
incretin, hormone-GPCR complex, extracellular domain,
ligand binding domain, ECD; HET: QKH; 1.90A {Homo
sapiens}
Length = 135
Score = 42.4 bits (99), Expect = 5e-06
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 4 FFYLNAENASKWCNANGSWNSFANYSLCTDIKKTTQDLSEPGI 46
++ A + C ++G W + +++ C + +K L + I
Sbjct: 88 HHHVAAGFVLRQCGSDGQWGLWRDHTQCENPEKNEAFLDQRLI 130
>1u34_A CRFR2B, corticotropin releasing factor receptor 2; beta sheets and
loops, signaling protein; NMR {Mus musculus} SCOP:
g.76.1.1 PDB: 2jnd_A* 2jnc_A
Length = 119
Score = 39.4 bits (91), Expect = 4e-05
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 4 FFYLNAENASKWCNANGSWNSFANYSLCTDI 34
Y NA + C NG+W S NYS C I
Sbjct: 77 IKYNTTRNAYRECLENGTWASRVNYSHCEPI 107
>2l27_A Seven transmembrane helix receptor; CRF, ECD1, family B1, alpha
helical CRF, membrane P peptide binding protein; NMR
{Homo sapiens}
Length = 84
Score = 38.5 bits (89), Expect = 6e-05
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 4 FFYLNAENASKWCNANGSWNSFANYSLCTDI 34
Y N + C ANGSW + NYS C +I
Sbjct: 51 VRYNTTNNGYRECLANGSWAARVNYSECQEI 81
>3c5t_A Glucagon-like peptide 1 receptor; ligand-bound G protein-coupled
receptor extracellular domain protein coupled receptor,
glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens}
PDB: 3c59_A* 3iol_A*
Length = 122
Score = 33.6 bits (76), Expect = 0.007
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 4 FFYLNAENASKWCNANGSW-------NSFANYSLCTDIKKTTQDLSE 43
+ + ++C A G W + + S C + K+ + E
Sbjct: 69 ASSVPQGHVYRFCTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPE 115
>2x57_A Vasoactive intestinal polypeptide receptor 2; G-protein coupled
receptor, circadian rhythm, MALE reproduct hormone
binding, growth, transducer; 2.10A {Homo sapiens}
Length = 116
Score = 32.0 bits (72), Expect = 0.021
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 4 FFYLNAENASKWCNANGSWNSFANYSLC 31
FY A N SK C ++G +F ++
Sbjct: 79 NFYSKAGNISKNCTSDGWSETFPDFVDA 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.051
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 23/80 (28%)
Query: 63 ALIIAVWIF-------VYFKDLRCLRNKIHTNLMCTY--ILADFMWILTMTVQMSVQSNF 113
A ++A IF YF++LR ++ TY ++ D + T+ +++
Sbjct: 154 AQLVA--IFGGQGNTDDYFEELR----DLYQ----TYHVLVGDLIKFSAETLSELIRTTL 203
Query: 114 ACVILYIFLHYCHLTNFFWM 133
+F ++ W+
Sbjct: 204 DAE--KVFTQGLNILE--WL 219
>3n7s_A Calcitonin gene-related peptide type 1 receptor; GPCR, class B
GPCR, antagonist, olcegepant, telcagepant, MIG membrane
protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_A*
3n7p_A* 3aqf_B
Length = 115
Score = 30.1 bits (67), Expect = 0.10
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 3 LFFYLNAENASKWCNANGSW-------NSFANYSLCT 32
+ +E +K C+ +G+W ++ NY+ C
Sbjct: 74 FQDFDPSEKVTKICDQDGNWFRHPASNRTWTNYTQCN 110
>2xdg_A Growth hormone-releasing hormone receptor; signaling protein,
membrane protein; 1.95A {Homo sapiens}
Length = 92
Score = 29.3 bits (65), Expect = 0.18
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 4 FFYLNAENASKWCNANGSWNSFANYSLC 31
F + + C G F Y +
Sbjct: 53 HFSSESGAVKRDCTITGWSEPFPPYPVA 80
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid
hormone receptor...; GPCR, extracellular domain, PTHRP,
PTH, PThr1, sugar transpo transport, membrane protein;
HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Length = 539
Score = 28.4 bits (63), Expect = 0.92
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 2 DLFFYLNAE-NASKWCNANGSW-------NSFANYSLCTDI 34
D + N + +A + C+ NGSW ++ANYS C
Sbjct: 479 DYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKF 519
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.5
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 52 IYS-VGYTLSLIALIIAVWIF--VYFKDLRCLRNKI-HTNLMC 90
YS +G+ L I + +F V+ D R L KI H +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAW 514
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution
structure, apoptosis; NMR {Human herpesvirus 8} SCOP:
f.1.4.1
Length = 158
Score = 27.0 bits (59), Expect = 1.7
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 6 YLNAENASKWCNANGSWNSFANYSLCTDIKKTTQDL 41
Y +W A G W Y CT + DL
Sbjct: 118 YAYEAIGPQWFRARGGWRGLKAY--CTQVLTDDDDL 151
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A
{Caenorhabditis elegans} SCOP: f.1.4.1
Length = 204
Score = 26.3 bits (57), Expect = 3.7
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 6 YLNAENASKWCNANGSWNSFANY 28
++ + W N SW+ F
Sbjct: 158 FIKTRIRNNWKEHNRSWDDFMTL 180
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane,
mitochondri nucleus, transmembrane; NMR {Mus musculus}
Length = 170
Score = 25.9 bits (56), Expect = 3.9
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 6 YLNAENASKWCNANGSWNSFANY 28
L A G W+ F +
Sbjct: 140 LLMGRRHRARLEALGGWDGFCRF 162
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A
2jcn_A 2yv6_A 3qbr_B* 2xpx_B 2jby_B 2voh_B*
Length = 171
Score = 25.9 bits (56), Expect = 4.1
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 6 YLNAENASKWCNANGSWNSFANYS 29
++ ++W G W + N
Sbjct: 146 FMLHHCIARWIAQRGGWVAALNLG 169
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis
elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Length = 175
Score = 25.9 bits (56), Expect = 4.2
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 6 YLNAENASKWCNANGSWNSFANY 28
++ + W N SW+ F
Sbjct: 138 FIKTRIRNNWKEHNRSWDDFMTL 160
>2jod_A Pituitary adenylate cyclase-activating polypeptide type I
receptor; protein/peptide complex, signaling protein;
NMR {Homo sapiens} SCOP: g.76.1.1
Length = 106
Score = 25.5 bits (55), Expect = 4.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 11 NASKWCNANGSWNSFANYSL 30
S+ C +G F +Y
Sbjct: 76 VVSRNCTEDGWSEPFPHYFD 95
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 25.3 bits (55), Expect = 8.6
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 48 ITTMIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTVQM 107
+ + + I +++F K L+ N NL +DF + L +
Sbjct: 36 SLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINL----AFSDFTFSLVNGFPL 91
Query: 108 SVQSNF 113
S F
Sbjct: 92 MTISCF 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.139 0.465
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,038,371
Number of extensions: 100144
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 24
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (24.2 bits)