RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8055
         (139 letters)



>d1u34a_ g.76.1.1 (A:) Corticotropin releasing factor receptor 2,
           CRFR-2beta {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 119

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 4   FFYLNAENASKWCNANGSWNSFANYSLCTDI 34
             Y    NA + C  NG+W S  NYS C  I
Sbjct: 77  IKYNTTRNAYRECLENGTWASRVNYSHCEPI 107


>d2joda1 g.76.1.1 (A:17-122) Pituitary adenylate
          cyclase-activating polypeptide type I receptor {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 27.2 bits (60), Expect = 0.33
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 11 NASKWCNANGSWNSFANY 28
            S+ C  +G    F +Y
Sbjct: 76 VVSRNCTEDGWSEPFPHY 93


>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 172

 Score = 25.3 bits (55), Expect = 2.5
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 6   YLNAENASKWCNANGSWNSFANY 28
           ++     + W   N SW+ F   
Sbjct: 135 FIKTRIRNNWKEHNRSWDDFMTL 157


>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated
           herpesvirus [TaxId: 37296]}
          Length = 146

 Score = 24.8 bits (54), Expect = 3.5
 Identities = 6/23 (26%), Positives = 7/23 (30%)

Query: 6   YLNAENASKWCNANGSWNSFANY 28
           Y       +W  A G W     Y
Sbjct: 118 YAYEAIGPQWFRARGGWRGLKAY 140


>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia
           sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 162

 Score = 24.9 bits (54), Expect = 3.6
 Identities = 3/20 (15%), Positives = 5/20 (25%)

Query: 9   AENASKWCNANGSWNSFANY 28
                 W      W+ F  +
Sbjct: 134 VRTKRDWLVKQRGWDGFVEF 153


>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 196

 Score = 24.5 bits (53), Expect = 5.0
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 6   YLNAENASKWCNANGSWNSFANY 28
           YLN ++   W   NG W++F + 
Sbjct: 173 YLN-DHLEPWIQENGGWDTFVDL 194


>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE
          {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 82

 Score = 23.5 bits (51), Expect = 5.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 48 ITTMIYSVGYTLSLIALIIAVWIFVY 73
          IT++ Y V +++++ AL IA W+FV 
Sbjct: 12 ITSVRYWVIHSITIPALFIAGWLFVS 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.139    0.465 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,294
Number of extensions: 21252
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 18
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (22.5 bits)