Query psy8057
Match_columns 243
No_of_seqs 251 out of 1295
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:16:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4564|consensus 100.0 1.4E-34 3E-39 273.2 16.3 172 54-225 231-431 (473)
2 KOG4193|consensus 100.0 7.4E-31 1.6E-35 256.1 10.2 161 53-215 387-583 (610)
3 PF00002 7tm_2: 7 transmembran 99.9 4.8E-23 1E-27 179.2 0.0 138 54-192 74-242 (242)
4 KOG4289|consensus 99.8 6E-20 1.3E-24 186.2 8.9 150 54-208 2228-2399(2531)
5 KOG4564|consensus 99.4 8.8E-14 1.9E-18 132.3 1.0 72 3-88 278-356 (473)
6 PF05462 Dicty_CAR: Slime mold 98.4 1.8E-07 4E-12 85.3 2.7 154 54-211 77-268 (303)
7 PF00002 7tm_2: 7 transmembran 96.9 0.00022 4.8E-09 61.8 0.0 57 3-73 121-179 (242)
8 PF02101 Ocular_alb: Ocular al 96.4 0.0054 1.2E-07 57.5 5.6 139 53-196 117-310 (405)
9 KOG4193|consensus 94.7 0.021 4.6E-07 56.9 2.7 61 3-72 436-497 (610)
10 PF10320 7TM_GPCR_Srsx: Serpen 92.4 0.2 4.4E-06 44.3 4.6 70 139-211 178-257 (257)
11 PF01534 Frizzled: Frizzled/Sm 91.9 0.52 1.1E-05 43.7 6.9 50 80-130 138-207 (328)
12 PHA03087 G protein-coupled che 84.6 5.7 0.00012 35.8 8.5 76 142-217 238-327 (335)
13 KOG4219|consensus 70.5 29 0.00063 33.2 8.7 73 142-214 255-336 (423)
14 PF10328 7TM_GPCR_Srx: Serpent 67.6 11 0.00025 33.1 5.2 27 181-211 247-273 (274)
15 PHA03235 DNA packaging protein 64.6 29 0.00062 32.9 7.6 25 190-214 300-324 (409)
16 PHA03234 DNA packaging protein 60.3 17 0.00037 33.4 5.1 21 194-214 297-317 (338)
17 PF10324 7TM_GPCR_Srw: Serpent 57.0 17 0.00037 32.5 4.5 29 184-212 288-316 (318)
18 PF10321 7TM_GPCR_Srt: Serpent 53.1 32 0.00068 31.6 5.6 30 186-215 280-309 (313)
19 PF10318 7TM_GPCR_Srh: Serpent 47.5 43 0.00093 29.7 5.4 38 175-212 264-301 (302)
20 KOG4289|consensus 41.1 16 0.00034 40.4 1.8 37 35-72 2287-2324(2531)
21 PF10323 7TM_GPCR_Srv: Serpent 39.9 96 0.0021 27.7 6.5 14 199-212 269-282 (283)
22 PHA02638 CC chemokine receptor 23.9 4.5E+02 0.0098 24.8 8.4 21 194-214 378-398 (417)
23 PF11710 Git3: G protein-coupl 21.0 61 0.0013 27.7 1.7 43 89-132 153-198 (201)
No 1
>KOG4564|consensus
Probab=100.00 E-value=1.4e-34 Score=273.22 Aligned_cols=172 Identities=40% Similarity=0.667 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHhhhccc----------ccccccc----eeeecccCCccc-------------c-eeecccCC-ceeE
Q psy8057 54 ILVLFINCLFLIMIMWPRL----------VTQHEDR----EYQSQGMGDIGL-------------R-HCPWMTPH-VYDW 104 (243)
Q Consensus 54 ~~~ilin~~fl~~i~wvl~----------~~~~~~r----~Y~~~g~G~P~~-------------~-~C~Wl~~~-~~~w 104 (243)
.+.++.+++...|++|||+ ..+..++ .|..+|||.|++ + .||+.+++ +..|
T Consensus 231 ~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d~~CW~~~~~~~~~W 310 (473)
T KOG4564|consen 231 LLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFSERRYFWLYLLIGWGVPAVFVVVWAIVRLYLEDTGCWDSNDTGHIWW 310 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeccCccHHHHHHHHhhCCcHHHhhhHHhHheeeccccccccCCCcceEE
Confidence 5678899999999999996 2222322 389999999983 3 49444454 7999
Q ss_pred EEechhHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHhhhhcceeeeeeeecCCccHHHHHHHHHHHH
Q psy8057 105 IYQAPAILVLFINCLFLIMIMWVLITKLRSANTVETQQYRKATKALVVLIPLLGITYILVIAGPTEGPYVSLYAHLRAIL 184 (243)
Q Consensus 105 ~f~gPv~~iiliN~vifi~vi~~l~~k~~~~~~~~~~~~r~~~k~~l~L~pLlGltWi~g~l~~~~~~~~~~~~ylF~il 184 (243)
++.||+++.+++|+++|+.|+|+|++|+|+++..+.+++||++|++++|+||||++.++..+.++++....++.|.-.++
T Consensus 311 Ii~gPi~~ai~vNf~flinIvrILv~KLr~~~~~~~~~y~K~vKaTLvLIPLfGI~~ilf~~~P~~~~~~~v~~~~~~~L 390 (473)
T KOG4564|consen 311 IIRGPILLAILVNFIFLINIVRILVTKLRASNASETDQYRKLVKATLVLIPLFGIHYILFAFRPDEDTLREVYLYFELFL 390 (473)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHcCCeeEEEEecCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999997643467899999999
Q ss_pred hhcchhhhhhhhhhcCHHHHHHHHHHHhhhhhhccCCCCCc
Q psy8057 185 LSTQGFTVALFYCFLNTEVQNTLRHHLERWKEARNLGAGGR 225 (243)
Q Consensus 185 nslQG~fIfl~yC~~n~eVr~~~~r~~~r~~~~r~~~~~~~ 225 (243)
+|+|||||+++|||+|+|||.++||.|+||+++++.+++.+
T Consensus 391 ~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~~~~~~~~~~ 431 (473)
T KOG4564|consen 391 GSFQGFFVAVLYCFLNGEVQAELRRKWSRWRLSRSLGRERR 431 (473)
T ss_pred HhccchheehheeecCHHHHHHHHHHHHhcChhhccccccc
Confidence 99999999999999999999999999999999999987643
No 2
>KOG4193|consensus
Probab=99.97 E-value=7.4e-31 Score=256.11 Aligned_cols=161 Identities=22% Similarity=0.454 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHhhhcccccc------------cccc-e--eeecccCCccc-------------------ceeeccc
Q psy8057 53 AILVLFINCLFLIMIMWPRLVTQ------------HEDR-E--YQSQGMGDIGL-------------------RHCPWMT 98 (243)
Q Consensus 53 v~~~ilin~~fl~~i~wvl~~~~------------~~~r-~--Y~~~g~G~P~~-------------------~~C~Wl~ 98 (243)
..+++++||+||+.+.||+.... ...+ . |...|||.|+. ++| |+.
T Consensus 387 ~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~C-Wl~ 465 (610)
T KOG4193|consen 387 IAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVC-WLD 465 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCce-EEe
Confidence 47888999999999999985211 1111 1 44699999983 579 999
Q ss_pred C-CceeEEEechhHHHHHHHHHHHHHHHHHHHHHhhccCc-cchHHHHHHHHHHHHHhhhhcceeeeeeeecCCccHHHH
Q psy8057 99 P-HVYDWIYQAPAILVLFINCLFLIMIMWVLITKLRSANT-VETQQYRKATKALVVLIPLLGITYILVIAGPTEGPYVSL 176 (243)
Q Consensus 99 ~-~~~~w~f~gPv~~iiliN~vifi~vi~~l~~k~~~~~~-~~~~~~r~~~k~~l~L~pLlGltWi~g~l~~~~~~~~~~ 176 (243)
+ +..+|+|.||+++++++|+++|+.+++++.++++..++ .++.+..+..+.++.|+++||+||+||++...++ .+.+
T Consensus 466 ~~~~~~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~~~-~~~v 544 (610)
T KOG4193|consen 466 TQNGFIWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTWIFGIFSWLPG-TSVV 544 (610)
T ss_pred cCCceEEEEehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchH
Confidence 6 57899999999999999999999999999887665433 2333333779999999999999999999988665 5789
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcCHHHHHHHHHHHhhhh
Q psy8057 177 YAHLRAILLSTQGFTVALFYCFLNTEVQNTLRHHLERWK 215 (243)
Q Consensus 177 ~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r~~~r~~ 215 (243)
++|+|+|+|++||+|||++||+++++||++++|+++..+
T Consensus 545 ~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~ 583 (610)
T KOG4193|consen 545 FAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGR 583 (610)
T ss_pred HHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999998333
No 3
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=99.85 E-value=4.8e-23 Score=179.20 Aligned_cols=138 Identities=29% Similarity=0.569 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccccc----------cc----ccceeeecccCCccc---------------ceeecccCC-cee
Q psy8057 54 ILVLFINCLFLIMIMWPRLVT----------QH----EDREYQSQGMGDIGL---------------RHCPWMTPH-VYD 103 (243)
Q Consensus 54 ~~~ilin~~fl~~i~wvl~~~----------~~----~~r~Y~~~g~G~P~~---------------~~C~Wl~~~-~~~ 103 (243)
..+++.|++++..+.||+... .. +...|..+|||.|+. +.| |++++ +..
T Consensus 74 ~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~C-Wl~~~~~~~ 152 (242)
T PF00002_consen 74 AIAILLHYFFLASFFWMLVEAFYLYRLLVKVFNSSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGNDNC-WLSNDWGFI 152 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHhheeEEEeecccchhhheeeeeeecCcceeeeeeeeecccccccccc-cccCCCceE
Confidence 567889999999999998611 11 113478999999973 469 99975 789
Q ss_pred EEEechhHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHH-HHHHHHHHhhhhcceeeeeeeecCCccHHHHHHHHHH
Q psy8057 104 WIYQAPAILVLFINCLFLIMIMWVLITKLRSANTVETQQYRK-ATKALVVLIPLLGITYILVIAGPTEGPYVSLYAHLRA 182 (243)
Q Consensus 104 w~f~gPv~~iiliN~vifi~vi~~l~~k~~~~~~~~~~~~r~-~~k~~l~L~pLlGltWi~g~l~~~~~~~~~~~~ylF~ 182 (243)
|+|.+|+++++++|+++++.+++++.++.++++++++++.++ .+|+.+.|+|++|++|+++++...+++.+.+++|+|+
T Consensus 153 ~~f~~P~~~~l~in~vi~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~llg~~w~~~~~~~~~~~~~~~~~~lf~ 232 (242)
T PF00002_consen 153 WAFVGPVLIILLINIVIFILVLRVLVRKSRSSDKSEKKKRRKKILRASLILLPLLGITWLFGILAVSDSVDSLVFQYLFA 232 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEecccceecccchhheeeEEeehhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHheeeeeeecccchHHHHHHHHH
Confidence 999999999999999999999999988777655556666664 8999999999999999999988765434789999999
Q ss_pred HHhhcchhhh
Q psy8057 183 ILLSTQGFTV 192 (243)
Q Consensus 183 ilnslQG~fI 192 (243)
++||+||++|
T Consensus 233 i~nslQG~~I 242 (242)
T PF00002_consen 233 ILNSLQGFFI 242 (242)
T ss_dssp ----------
T ss_pred HHHcCcceeC
Confidence 9999999986
No 4
>KOG4289|consensus
Probab=99.80 E-value=6e-20 Score=186.18 Aligned_cols=150 Identities=23% Similarity=0.374 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhhhccc------------ccccccceeeecccCCcc---------cceeecccC-CceeEEEechhH
Q psy8057 54 ILVLFINCLFLIMIMWPRL------------VTQHEDREYQSQGMGDIG---------LRHCPWMTP-HVYDWIYQAPAI 111 (243)
Q Consensus 54 ~~~ilin~~fl~~i~wvl~------------~~~~~~r~Y~~~g~G~P~---------~~~C~Wl~~-~~~~w~f~gPv~ 111 (243)
..++++||+++..+.|.++ ......+.|+.+|||.|+ +++| |++. +.++|+|.||+.
T Consensus 2228 vvailLhf~~~stFaWlfl~gLhlYRml~e~v~tg~mrfy~~vGwgvPa~itglavgldDfC-wlS~h~~LiWsfagPig 2306 (2531)
T KOG4289|consen 2228 VVAILLHFTYLSTFAWLFLEGLHLYRMLTENVDTGPMRFYYLVGWGVPALITGLAVGLDDFC-WLSPHDTLIWSFAGPIG 2306 (2531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCceeEEEEeecchhhheeeeeeccccee-ecccchheeeeecccce
Confidence 4677899999999999875 233456789999999998 3799 9995 689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHhhhhcceeeeeeeecCCccHHHHHHHHHHHHhhcchhh
Q psy8057 112 LVLFINCLFLIMIMWVLITKLRSANTVETQQYRKATKALVVLIPLLGITYILVIAGPTEGPYVSLYAHLRAILLSTQGFT 191 (243)
Q Consensus 112 ~iiliN~vifi~vi~~l~~k~~~~~~~~~~~~r~~~k~~l~L~pLlGltWi~g~l~~~~~~~~~~~~ylF~ilnslQG~f 191 (243)
+++++|+..+++..|+-+.|+.. .-.++..-+.++..+.++.++|.||++++++.+.+ ...|+|+|+.++.+||.|
T Consensus 2307 l~i~ms~~~~~lsa~vSc~~k~~--~f~kK~~v~~lq~~fl~llllsatwl~~ll~vn~~--~l~fhyl~a~~~~lqg~~ 2382 (2531)
T KOG4289|consen 2307 LVILMSFYAAALSARVSCHKKYQ--VFVKKGNVSVLQHSFLLLLLLSATWLLGLLAVNPD--PLEFHYLFASIIGLQGPF 2382 (2531)
T ss_pred eeehHHHHHHHHHHHHhhhhhhe--eeeeccchhhhHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhhHH
Confidence 99999999999988876655432 12233334578888888899999999999998764 588999999999999999
Q ss_pred hhhhhhhcCHHHHHHHH
Q psy8057 192 VALFYCFLNTEVQNTLR 208 (243)
Q Consensus 192 Ifl~yC~~n~eVr~~~~ 208 (243)
|+++||++|.|||++++
T Consensus 2383 Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2383 VLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred HHHHHhhhcHHHHHhhc
Confidence 99999999999999988
No 5
>KOG4564|consensus
Probab=99.38 E-value=8.8e-14 Score=132.27 Aligned_cols=72 Identities=28% Similarity=0.586 Sum_probs=62.8
Q ss_pred CCcEEEeeeehhhhhccCCCccccCCCCCCCCCCCcc-cCCC-ceEEEEEchHHHHHHHHHHHHHHhhhcccc-----cc
Q psy8057 3 RAPLVIVTVWAIAKTFAPSSDIQSQGMGDIGLRHCPW-MTPH-VYDWIYQAPAILVLFINCLFLIMIMWPRLV-----TQ 75 (243)
Q Consensus 3 g~P~~~v~~w~i~r~~~~~~~~~~~~~~~~~~~~C~W-~~~~-~~~wi~~~Pv~~~ilin~~fl~~i~wvl~~-----~~ 75 (243)
|+|++||++|+++|.+++| .+| | ++++ ++||||+||+++++++||+||++|+|+|+. +.
T Consensus 278 G~P~v~v~~Wai~r~~~~d-------------~~C-W~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~KLr~~~~ 343 (473)
T KOG4564|consen 278 GVPAVFVVVWAIVRLYLED-------------TGC-WDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVTKLRASNA 343 (473)
T ss_pred CCcHHHhhhHHhHheeecc-------------ccc-cccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 8999999999999988888 489 8 5565 899999999999999999999999999973 34
Q ss_pred cccceeeecccCC
Q psy8057 76 HEDREYQSQGMGD 88 (243)
Q Consensus 76 ~~~r~Y~~~g~G~ 88 (243)
.++.+|+++.+++
T Consensus 344 ~~~~~y~K~vKaT 356 (473)
T KOG4564|consen 344 SETDQYRKLVKAT 356 (473)
T ss_pred cchHHHHHHHHHH
Confidence 5556799988875
No 6
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.37 E-value=1.8e-07 Score=85.28 Aligned_cols=154 Identities=14% Similarity=0.258 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhhhcccc----------cc----cccceeeecccCCccc---------------ceeecccCCce--
Q psy8057 54 ILVLFINCLFLIMIMWPRLV----------TQ----HEDREYQSQGMGDIGL---------------RHCPWMTPHVY-- 102 (243)
Q Consensus 54 ~~~ilin~~fl~~i~wvl~~----------~~----~~~r~Y~~~g~G~P~~---------------~~C~Wl~~~~~-- 102 (243)
.-+.+++++.+..++|.+.. .. ..++.|..++||.|.. .-| |++++..
T Consensus 77 ~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~~~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~~G~WC-WI~~~~~~~ 155 (303)
T PF05462_consen 77 FQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYDELEKLEKYYHLVCWGIPLIPAVIPLIGNDYGPAGNWC-WIKPEWDVW 155 (303)
T ss_pred hHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCce-eecCCCcch
Confidence 45667899999999998741 11 1113488999999973 479 9997532
Q ss_pred -eEEEechhHHHHHHHHHHHHHHHHHHHHHhhccCccchH-HHHHHHHHHHHHhhhhcceeeeeeee-----cCCccHHH
Q psy8057 103 -DWIYQAPAILVLFINCLFLIMIMWVLITKLRSANTVETQ-QYRKATKALVVLIPLLGITYILVIAG-----PTEGPYVS 175 (243)
Q Consensus 103 -~w~f~gPv~~iiliN~vifi~vi~~l~~k~~~~~~~~~~-~~r~~~k~~l~L~pLlGltWi~g~l~-----~~~~~~~~ 175 (243)
+..|-+|+.+++.++.++...+.+...+..+.....+++ +.+...|...=. -.+=+-|++++.. ..+ ...
T Consensus 156 r~~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~~~sd~~~~~~~~~~kL~~Yp-~ifiicw~fa~INRI~~~~~~--~~~ 232 (303)
T PF05462_consen 156 RFALFYIPLWIIIIISAILVGITMRYIYRVIRNGVSDNKDKHLKYQLKLVNYP-LIFIICWIFATINRIYNFIGK--NPF 232 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC--Cch
Confidence 235789998888888765555555443333322111121 222233322211 1233467777532 122 235
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcCHHHHHHHHHHH
Q psy8057 176 LYAHLRAILLSTQGFTVALFYCFLNTEVQNTLRHHL 211 (243)
Q Consensus 176 ~~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r~~ 211 (243)
...++-+.+..+||++-++.|.+.|+-.++.+..+.
T Consensus 233 ~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~ 268 (303)
T PF05462_consen 233 WLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKI 268 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 678888999999999999999987766566655544
No 7
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=96.91 E-value=0.00022 Score=61.76 Aligned_cols=57 Identities=19% Similarity=0.550 Sum_probs=0.0
Q ss_pred CCcEEEeeeehhhhh-ccCCCccccCCCCCCCCCCCcccCCC-ceEEEEEchHHHHHHHHHHHHHHhhhcccc
Q psy8057 3 RAPLVIVTVWAIAKT-FAPSSDIQSQGMGDIGLRHCPWMTPH-VYDWIYQAPAILVLFINCLFLIMIMWPRLV 73 (243)
Q Consensus 3 g~P~~~v~~w~i~r~-~~~~~~~~~~~~~~~~~~~C~W~~~~-~~~wi~~~Pv~~~ilin~~fl~~i~wvl~~ 73 (243)
|.|+++++++++.+. .|++ ++| |.+++ +..|.+.+|+.+.+++|.+++..+.+.+..
T Consensus 121 g~P~~iv~i~~~~~~~~y~~-------------~~C-Wl~~~~~~~~~f~~P~~~~l~in~vi~~~v~~~l~~ 179 (242)
T PF00002_consen 121 GIPALIVVISVAVNSDGYGN-------------DNC-WLSNDWGFIWAFVGPVLIILLINIVIFILVLRVLVR 179 (242)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cCcceeeeeeeeeccccccc-------------ccc-cccCCCceEEEEEecccceecccchhheeeEEeehh
Confidence 789999999999993 4544 479 97765 788999999999999999999999988863
No 8
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=96.44 E-value=0.0054 Score=57.49 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhhhcccc--------cc----cccceeeecccCCccc--------------ceeecccCCc---ee
Q psy8057 53 AILVLFINCLFLIMIMWPRLV--------TQ----HEDREYQSQGMGDIGL--------------RHCPWMTPHV---YD 103 (243)
Q Consensus 53 v~~~ilin~~fl~~i~wvl~~--------~~----~~~r~Y~~~g~G~P~~--------------~~C~Wl~~~~---~~ 103 (243)
+..+.-+.+++.+.+.|.++- .. .....|..+.||.|+. ..| =-..+. -+
T Consensus 117 v~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ag~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~Ps~~~C-e~~l~~alphY 195 (405)
T PF02101_consen 117 VGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSAGRSTIWLYHMMAWGLPALLCAEGLAMLYYPSISRC-ESGLEHALPHY 195 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhheeeccCCCcchhHHHHHHHHHHHHHHHhccceeecCCHHhh-hhhhhhcchhH
Confidence 345667888888999998851 01 1123488999999973 235 111111 23
Q ss_pred EEEechhHHHHHHHHHHHHHHHHHHHHHhhccCc--c--chHH---H-HHHHHHHHHHhhhhcceeeeeee--------e
Q psy8057 104 WIYQAPAILVLFINCLFLIMIMWVLITKLRSANT--V--ETQQ---Y-RKATKALVVLIPLLGITYILVIA--------G 167 (243)
Q Consensus 104 w~f~gPv~~iiliN~vifi~vi~~l~~k~~~~~~--~--~~~~---~-r~~~k~~l~L~pLlGltWi~g~l--------~ 167 (243)
-..-+|++++++.|=++|..+.+++-+.++.++. . |++. + +|-++.. -+|=+-|+--+. .
T Consensus 196 vttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~----lVF~iCWlpNIINg~LL~~l~ 271 (405)
T PF02101_consen 196 VTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIM----LVFYICWLPNIINGSLLFYLE 271 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHhHHHHHHhh
Confidence 3567999999999999999999988776665532 1 2221 1 1222222 233445543221 1
Q ss_pred cCC----------ccHHHHHHHHHHHHhhcchhhhhhhh
Q psy8057 168 PTE----------GPYVSLYAHLRAILLSTQGFTVALFY 196 (243)
Q Consensus 168 ~~~----------~~~~~~~~ylF~ilnslQG~fIfl~y 196 (243)
... ++.....+|+-+|+|.+|||+-.+.|
T Consensus 272 ~~~~i~~~sl~~~~~a~~t~W~IMaIlNPlQgfLnsLay 310 (405)
T PF02101_consen 272 MQPDINGGSLKQVRNAALTTWFIMAILNPLQGFLNSLAY 310 (405)
T ss_pred cccccccccccchhhHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 111 12345789999999999999998887
No 9
>KOG4193|consensus
Probab=94.71 E-value=0.021 Score=56.94 Aligned_cols=61 Identities=21% Similarity=0.468 Sum_probs=49.1
Q ss_pred CCcEEEeeeehhhhhccCCCccccCCCCCCCCCCCcccC-CCceEEEEEchHHHHHHHHHHHHHHhhhccc
Q psy8057 3 RAPLVIVTVWAIAKTFAPSSDIQSQGMGDIGLRHCPWMT-PHVYDWIYQAPAILVLFINCLFLIMIMWPRL 72 (243)
Q Consensus 3 g~P~~~v~~w~i~r~~~~~~~~~~~~~~~~~~~~C~W~~-~~~~~wi~~~Pv~~~ilin~~fl~~i~wvl~ 72 (243)
|.|+++|.+-+.++...+++ ...+++| |.. +....|.+-||+.+.++.|..+|+..+|.+.
T Consensus 436 g~Pavvv~Isa~~~~~~~~~--------~~~~~~C-Wl~~~~~~~~~F~GPv~~ii~~Ni~~Fv~t~~~l~ 497 (610)
T KOG4193|consen 436 GVPAVVVGVSALVDPDLEGQ--------YGTPRVC-WLDTQNGFIWSFLGPVTLIILVNIVMFVVTLKKLL 497 (610)
T ss_pred hhhHHHHhheeEEeccCccc--------cccCCce-EEecCCceEEEEehHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999888876542 1112679 955 4588899999999999999999998888876
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=92.36 E-value=0.2 Score=44.30 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHHhhhhcceeeeeeee------c-CCc-cHHHH--HHHHHHHHhhcchhhhhhhhhhcCHHHHHHHH
Q psy8057 139 ETQQYRKATKALVVLIPLLGITYILVIAG------P-TEG-PYVSL--YAHLRAILLSTQGFTVALFYCFLNTEVQNTLR 208 (243)
Q Consensus 139 ~~~~~r~~~k~~l~L~pLlGltWi~g~l~------~-~~~-~~~~~--~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~ 208 (243)
..++.+|..|+..+++.+.-.+|.++... . .++ ..... ..-+++.+|..|=++|... +|+|=|++++
T Consensus 178 ~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~---~S~EYR~af~ 254 (257)
T PF10320_consen 178 NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYW---RSSEYRKAFR 254 (257)
T ss_pred cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEE---cCHHHHHHHH
Confidence 34556778888888888889999776421 1 111 11122 3347778888887766554 7999999999
Q ss_pred HHH
Q psy8057 209 HHL 211 (243)
Q Consensus 209 r~~ 211 (243)
+.|
T Consensus 255 ~~~ 257 (257)
T PF10320_consen 255 ELF 257 (257)
T ss_pred HhC
Confidence 865
No 11
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=91.88 E-value=0.52 Score=43.67 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=40.3
Q ss_pred eeeecccCCccc-----------------ceeecccCC---ceeEEEechhHHHHHHHHHHHHHHHHHHHH
Q psy8057 80 EYQSQGMGDIGL-----------------RHCPWMTPH---VYDWIYQAPAILVLFINCLFLIMIMWVLIT 130 (243)
Q Consensus 80 ~Y~~~g~G~P~~-----------------~~C~Wl~~~---~~~w~f~gPv~~iiliN~vifi~vi~~l~~ 130 (243)
++..++||.|+. ..| ++.+. ......++|.++.+++..++++..+..+.+
T Consensus 138 yfH~~aW~iP~~~ti~vL~~~~VdgD~ltGiC-~Vg~~~~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~r 207 (328)
T PF01534_consen 138 YFHLVAWGIPAVLTIAVLALRKVDGDELTGIC-FVGNQNPSALRGFVLAPLFIYLLIGTVFLLAGFVSLFR 207 (328)
T ss_pred hhhhHHhhhhHHHHHHHHHhccccccccccee-EEeCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468899999973 479 98853 245568999999999999999988877764
No 12
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=84.65 E-value=5.7 Score=35.78 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhhcceeeeeee----------ecCC-ccHHHHHHHHH---HHHhhcchhhhhhhhhhcCHHHHHHH
Q psy8057 142 QYRKATKALVVLIPLLGITYILVIA----------GPTE-GPYVSLYAHLR---AILLSTQGFTVALFYCFLNTEVQNTL 207 (243)
Q Consensus 142 ~~r~~~k~~l~L~pLlGltWi~g~l----------~~~~-~~~~~~~~ylF---~ilnslQG~fIfl~yC~~n~eVr~~~ 207 (243)
+.+|..|.++.++.++-+.|.=... ...+ ........++. ..+-.+-..+=-++|++++++.|++.
T Consensus 238 ~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~ 317 (335)
T PHA03087 238 KNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHK 317 (335)
T ss_pred hcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHH
Confidence 3456677777777777777732110 0111 11112222222 22333345567789999999999999
Q ss_pred HHHHhhhhhh
Q psy8057 208 RHHLERWKEA 217 (243)
Q Consensus 208 ~r~~~r~~~~ 217 (243)
++.++..+.+
T Consensus 318 ~~~~~~~~~~ 327 (335)
T PHA03087 318 KKSLKLMFTS 327 (335)
T ss_pred HHHHHHHhhc
Confidence 9988765444
No 13
>KOG4219|consensus
Probab=70.49 E-value=29 Score=33.24 Aligned_cols=73 Identities=16% Similarity=0.328 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhhhcceeeee----eee-cCCcc-HHHHHHHHHHH---HhhcchhhhhhhhhhcCHHHHHHHHHHHh
Q psy8057 142 QYRKATKALVVLIPLLGITYILV----IAG-PTEGP-YVSLYAHLRAI---LLSTQGFTVALFYCFLNTEVQNTLRHHLE 212 (243)
Q Consensus 142 ~~r~~~k~~l~L~pLlGltWi~g----~l~-~~~~~-~~~~~~ylF~i---lnslQG~fIfl~yC~~n~eVr~~~~r~~~ 212 (243)
..||..|..++.+..+++-|+=- .+. ..++- .....++.+.. +-..---+==+.||++|++.|..++|.++
T Consensus 255 ak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr 334 (423)
T KOG4219|consen 255 AKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFR 334 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhh
Confidence 34678899999999999999521 111 11110 11112222210 11111112336799999999999999988
Q ss_pred hh
Q psy8057 213 RW 214 (243)
Q Consensus 213 r~ 214 (243)
-+
T Consensus 335 ~c 336 (423)
T KOG4219|consen 335 WC 336 (423)
T ss_pred ee
Confidence 66
No 14
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=67.62 E-value=11 Score=33.12 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=19.6
Q ss_pred HHHHhhcchhhhhhhhhhcCHHHHHHHHHHH
Q psy8057 181 RAILLSTQGFTVALFYCFLNTEVQNTLRHHL 211 (243)
Q Consensus 181 F~ilnslQG~fIfl~yC~~n~eVr~~~~r~~ 211 (243)
....+++.|+...+ .|+|+|+.++|..
T Consensus 247 w~~~h~~DG~i~l~----fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 247 WVLVHALDGLIMLI----FNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHhcceeEeE----EcHHHHHHHHhcc
Confidence 45678889976554 4799998887754
No 15
>PHA03235 DNA packaging protein UL33; Provisional
Probab=64.63 E-value=29 Score=32.95 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=19.8
Q ss_pred hhhhhhhhhcCHHHHHHHHHHHhhh
Q psy8057 190 FTVALFYCFLNTEVQNTLRHHLERW 214 (243)
Q Consensus 190 ~fIfl~yC~~n~eVr~~~~r~~~r~ 214 (243)
.+==++|++.+++.|+.+++.+++.
T Consensus 300 ~lNPiIY~~~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 300 LLNPILYAFLGNDFLKRFRQCFRGE 324 (409)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHhhh
Confidence 3344789999999999999888653
No 16
>PHA03234 DNA packaging protein UL33; Provisional
Probab=60.34 E-value=17 Score=33.41 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=18.3
Q ss_pred hhhhhcCHHHHHHHHHHHhhh
Q psy8057 194 LFYCFLNTEVQNTLRHHLERW 214 (243)
Q Consensus 194 l~yC~~n~eVr~~~~r~~~r~ 214 (243)
++|++.+++.|+++++.++++
T Consensus 297 iIY~f~~~~FR~~~~~~~~~~ 317 (338)
T PHA03234 297 LVYAFTGGDFRLRFTACFQDF 317 (338)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 678999999999999888775
No 17
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=57.00 E-value=17 Score=32.48 Aligned_cols=29 Identities=14% Similarity=0.427 Sum_probs=21.9
Q ss_pred HhhcchhhhhhhhhhcCHHHHHHHHHHHh
Q psy8057 184 LLSTQGFTVALFYCFLNTEVQNTLRHHLE 212 (243)
Q Consensus 184 lnslQG~fIfl~yC~~n~eVr~~~~r~~~ 212 (243)
+..+=...=++++|+++.|=|++.++-++
T Consensus 288 l~~~ns~~h~~ic~~mSsqYR~t~~~~f~ 316 (318)
T PF10324_consen 288 LITINSSIHFFICCFMSSQYRKTVKKLFG 316 (318)
T ss_pred HHHHHhhhHHHhhhhhhHHHHHHHHHHhc
Confidence 33344446788889999999999988765
No 18
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=53.07 E-value=32 Score=31.65 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=22.3
Q ss_pred hcchhhhhhhhhhcCHHHHHHHHHHHhhhh
Q psy8057 186 STQGFTVALFYCFLNTEVQNTLRHHLERWK 215 (243)
Q Consensus 186 slQG~fIfl~yC~~n~eVr~~~~r~~~r~~ 215 (243)
.+.-=...+.|-.+|+.+|++.+|.+...+
T Consensus 280 ql~~g~~~iIYl~lNrtIR~~~~k~~~~k~ 309 (313)
T PF10321_consen 280 QLSHGCPPIIYLTLNRTIRNSVLKMLGPKK 309 (313)
T ss_pred hccCCccceEEEEECHHHHHHHHHHHcccc
Confidence 333345667788899999999999887533
No 19
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=47.48 E-value=43 Score=29.74 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcchhhhhhhhhhcCHHHHHHHHHHHh
Q psy8057 175 SLYAHLRAILLSTQGFTVALFYCFLNTEVQNTLRHHLE 212 (243)
Q Consensus 175 ~~~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r~~~ 212 (243)
..+.++..++-+++|..--+...+.|+--|+...+.++
T Consensus 264 q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~ 301 (302)
T PF10318_consen 264 QALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFR 301 (302)
T ss_pred cccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhc
Confidence 45667777888999999999988999999998888765
No 20
>KOG4289|consensus
Probab=41.11 E-value=16 Score=40.43 Aligned_cols=37 Identities=22% Similarity=0.588 Sum_probs=30.6
Q ss_pred CCCcccCCC-ceEEEEEchHHHHHHHHHHHHHHhhhccc
Q psy8057 35 RHCPWMTPH-VYDWIYQAPAILVLFINCLFLIMIMWPRL 72 (243)
Q Consensus 35 ~~C~W~~~~-~~~wi~~~Pv~~~ilin~~fl~~i~wvl~ 72 (243)
+.| |...| .+.|-+.+||-+++++|++.++.-.++-+
T Consensus 2287 DfC-wlS~h~~LiWsfagPigl~i~ms~~~~~lsa~vSc 2324 (2531)
T KOG4289|consen 2287 DFC-WLSPHDTLIWSFAGPIGLVILMSFYAAALSARVSC 2324 (2531)
T ss_pred cee-ecccchheeeeecccceeeehHHHHHHHHHHHHhh
Confidence 579 98887 88999999999999999987665555543
No 21
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=39.88 E-value=96 Score=27.67 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=11.3
Q ss_pred cCHHHHHHHHHHHh
Q psy8057 199 LNTEVQNTLRHHLE 212 (243)
Q Consensus 199 ~n~eVr~~~~r~~~ 212 (243)
.|+++|++.++..+
T Consensus 269 ~n~~lr~~~~~~~~ 282 (283)
T PF10323_consen 269 FNKDLRKQVRRMLK 282 (283)
T ss_pred ccHHHHHHHHHHcC
Confidence 59999998887653
No 22
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=23.95 E-value=4.5e+02 Score=24.82 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=16.4
Q ss_pred hhhhhcCHHHHHHHHHHHhhh
Q psy8057 194 LFYCFLNTEVQNTLRHHLERW 214 (243)
Q Consensus 194 l~yC~~n~eVr~~~~r~~~r~ 214 (243)
++|++.+++.|+++++-+++.
T Consensus 378 iIY~f~~~~FR~~l~~~~~~~ 398 (417)
T PHA02638 378 LIYTLIGENFRMHLLMIFRNI 398 (417)
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 677888899999988876544
No 23
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=20.97 E-value=61 Score=27.70 Aligned_cols=43 Identities=16% Similarity=0.430 Sum_probs=31.4
Q ss_pred cccceeecccCCc---eeEEEechhHHHHHHHHHHHHHHHHHHHHHh
Q psy8057 89 IGLRHCPWMTPHV---YDWIYQAPAILVLFINCLFLIMIMWVLITKL 132 (243)
Q Consensus 89 P~~~~C~Wl~~~~---~~w~f~gPv~~iiliN~vifi~vi~~l~~k~ 132 (243)
|+..-| |+++++ -++.--+|.-++.+..+++.+.+.-.+.++.
T Consensus 153 ~~g~WC-Wi~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~ 198 (201)
T PF11710_consen 153 PAGAWC-WIPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRI 198 (201)
T ss_pred ccCcEE-EECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345689 999764 3566778888899888888888776665443
Done!