RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8057
         (243 letters)



>gnl|CDD|215647 pfam00002, 7tm_2, 7 transmembrane receptor (Secretin family).  This
           family is known as Family B, the secretin-receptor
           family or family 2 of the G-protein-coupled receptors
           (GCPRs).They have been described in many animal species,
           but not in plants, fungi or prokaryotes. Three distinct
           sub-families are recognised. Subfamily B1 contains
           classical hormone receptors, such as receptors for
           secretin and glucagon, that are all involved in
           cAMP-mediated signalling pathways. Subfamily B2 contains
           receptors with long extracellular N-termini, such as the
           leukocyte cell-surface antigen CD97 ;
           calcium-independent receptors for latrotoxin, and
           brain-specific angiogenesis inhibitors amongst others.
           Subfamily B3 includes Methuselah and other Drosophila
           proteins. Other than the typical seven-transmembrane
           region, characteristic structural features include an
           amino-terminal extracellular domain involved in ligand
           binding, and an intracellular loop (IC3) required for
           specific G-protein coupling.
          Length = 239

 Score = 93.4 bits (233), Expect = 3e-23
 Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 3/99 (3%)

Query: 96  WMTPHVY-DWIYQAPAILVLFINCLFLIMIMWVLITKLRSANTVETQQYRK-ATKALVVL 153
           W++ +    WI++ P +LV+ +N +F I I+ +L+ KLRS +  ET QYRK   K+ +VL
Sbjct: 142 WLSNNGGFWWIFKGPVLLVILVNFIFFINILRILVQKLRSPDMGETDQYRKRLAKSTLVL 201

Query: 154 IPLLGITYILVIAGPTEGPYVSLYAHLRAILLSTQGFTV 192
           +PLLGIT+IL +  P +     ++ +L AIL S QGF V
Sbjct: 202 LPLLGITWILFLFAPEDD-VSIVFLYLFAILNSFQGFFV 239



 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 15/67 (22%)

Query: 4   APLVIVTVWAIAKTFAPSSDIQSQGMGDIGLRHCPWMTPHVY-DWIYQAPAILVLFINCL 62
            P V+V +WAI +                G   C W++ +    WI++ P +LV+ +N +
Sbjct: 121 VPAVVVGIWAIVRKG-------------YGNPGC-WLSNNGGFWWIFKGPVLLVILVNFI 166

Query: 63  FLIMIMW 69
           F I I+ 
Sbjct: 167 FFINILR 173


>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein.  This family
           includes auxin efflux carrier proteins and other
           transporter proteins from all domains of life.
          Length = 321

 Score = 30.4 bits (69), Expect = 0.69
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 102 YDWIYQAPAILVLFINCLFLIMIMWVLITKLRSANTVETQQYRKATKALVVL--IPLLGI 159
            + I     I VL +  + + +I+  L++K+         ++R              LG+
Sbjct: 56  LEMIVDFWLIPVLVVLIVAISLIIGFLVSKIFK----LPLEWRGVLILTSAFPNTGFLGL 111

Query: 160 TYILVIAGPTEGPYVSLYAHLRAILLST 187
             +L + G     Y  +   L  I++ T
Sbjct: 112 PLLLALYGEEGLSYAIISVVLGVIIIWT 139


>gnl|CDD|220913 pfam10949, DUF2777, Protein of unknown function (DUF2777).  This
           family of proteins with unknown function appears to be
           restricted to Bacillus cereus.
          Length = 184

 Score = 28.1 bits (63), Expect = 3.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 195 FYCFLNTEVQNTLRHHLERWKEARN 219
           F  F N E    L+HH +R  +  +
Sbjct: 143 FLLFDNDEAICALQHHYDRGSKKND 167


>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
          Length = 542

 Score = 27.9 bits (63), Expect = 5.0
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 39  WMTPHVYDWIYQAPAILVLFINCLFLIMIMWPRLVTQHEDRE 80
           W  P   D I  A   L++ I    +  ++ PRL     + E
Sbjct: 432 WQQPWFMDLIKLAAGALLILI---LIFFVLRPRLRPLLPEEE 470


>gnl|CDD|218818 pfam05940, NnrS, NnrS protein.  This family consists of several
           bacterial NnrS like proteins. NnrS is a putative heme-Cu
           protein (NnrS) and a member of the short-chain
           dehydrogenase family. Expression of nnrS is dependent on
           the transcriptional regulator NnrR, which also regulates
           expression of genes required for the reduction of
           nitrite to nitrous oxide, including nirK and nor. NnrS
           is a haem- and copper-containing membrane protein. Genes
           encoding putative orthologues of NnrS are sometimes but
           not always found in bacteria encoding nitrite and/or
           nitric oxide reductase.
          Length = 379

 Score = 27.5 bits (62), Expect = 6.5
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 108 APAILVLFINCLFLIMIMWVLITKLRSANTVETQQYRKATKALVVLIPLLGITYILVIAG 167
            P  L   ++  FL  +  +L  ++  A       +R      V L+ LLG+  +L    
Sbjct: 102 LPLWLAALLDLAFLPALAALLAREIIRAR-----NWRNL--FFVPLLLLLGLANLLFHLA 154

Query: 168 PTEGPYVSLYAHLRAILL 185
              G        LR  LL
Sbjct: 155 LLGGDLALALHGLRLGLL 172


>gnl|CDD|164646 MTH00076, COX2, cytochrome c oxidase subunit II; Provisional.
          Length = 228

 Score = 27.1 bits (60), Expect = 7.2
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 113 VLFINCLFLIMIMWVLITKLRSANTVETQQYR------KATKALVVLIPLLGITYIL 163
           V  I+ L L +I  ++ TKL + NT++ Q+         A   +V+ +P L I Y++
Sbjct: 31  VFLISTLVLYIITIMMTTKLTNTNTMDAQEIEMVWTIMPAIILIVIALPSLRILYLM 87


>gnl|CDD|235290 PRK04351, PRK04351, hypothetical protein; Provisional.
          Length = 149

 Score = 26.7 bits (60), Expect = 7.7
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 4/35 (11%)

Query: 75  QHEDREYQ--SQGMGDIGLRHCPWMTPHVYDWIYQ 107
           QH DR+++   + +G  G R+CP +     +++Y+
Sbjct: 82  QHRDRDFKELLKQVG--GPRYCPPLPSQKKNYLYE 114


>gnl|CDD|177178 MTH00117, COX2, cytochrome c oxidase subunit II; Provisional.
          Length = 227

 Score = 27.2 bits (61), Expect = 8.0
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 111 ILVLFINCLFLIMIMWVLITKLRSANTVETQQYRKATKAL--VVLI----PLLGITYIL 163
           ++ L I+ L L ++  +L TKL   NTV+ Q+       L  +VLI    P L I Y++
Sbjct: 29  MVALLISSLVLYLLTLMLTTKLTHTNTVDAQEVELIWTILPAIVLILLALPSLRILYLM 87


>gnl|CDD|227808 COG5521, COG5521, Predicted integral membrane protein [Function
           unknown].
          Length = 275

 Score = 27.1 bits (60), Expect = 9.2
 Identities = 7/36 (19%), Positives = 16/36 (44%)

Query: 48  IYQAPAILVLFINCLFLIMIMWPRLVTQHEDREYQS 83
            +Q    +++  +C  ++M+ W    T+  D    S
Sbjct: 240 FHQDLTTIMMVQSCGVVLMLSWAFYKTRFRDGNLHS 275


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.328    0.140    0.465 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,495,116
Number of extensions: 1173165
Number of successful extensions: 1662
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1653
Number of HSP's successfully gapped: 66
Length of query: 243
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 149
Effective length of database: 6,768,326
Effective search space: 1008480574
Effective search space used: 1008480574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.1 bits)