RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8057
(243 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.047
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 38/135 (28%)
Query: 84 QGMGDIG---LRHCPWMT--PHVYDWIYQAPAILVLFINC------LF---LIMIMWVLI 129
QG D LR + T V D I + L I +F L ++ W
Sbjct: 163 QGNTDDYFEELRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--- 218
Query: 130 TKLRSANTVETQQYRKATKALV---VLIPLLGIT----YILV--IAGPTEGPYVSLYAHL 180
L + + + Y L+ + PL+G+ Y++ + G T G L ++L
Sbjct: 219 --LENPSNTPDKDY------LLSIPISCPLIGVIQLAHYVVTAKLLGFTPG---ELRSYL 267
Query: 181 RAILLSTQGFTVALF 195
+ +QG A+
Sbjct: 268 KGATGHSQGLVTAVA 282
Score = 30.8 bits (69), Expect = 0.50
Identities = 46/256 (17%), Positives = 73/256 (28%), Gaps = 116/256 (45%)
Query: 4 APLVIVTVWAIAKTFAP-------SSDIQSQGMGDIG--LRHCPWMTPHVYDWIYQAPAI 54
LV + A+T + + + +QG+ +I L + P TP D++ P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLEN-PSNTPDK-DYLLSIP-- 235
Query: 55 LVLFINCLFLIMIMWPRL-VTQ--HEDREY----QSQGM--GDIGLRHCPWMTPHVYDWI 105
I P + V Q H Y + G G++ + T H +
Sbjct: 236 ------------ISCPLIGVIQLAH----YVVTAKLLGFTPGEL-RSYLKGATGHSQG-L 277
Query: 106 YQAPAI------------LVLFINCLFLIMIMWVLITKLRSANTVETQQYRKATKALVVL 153
A AI + I LF I +R + Y + +L
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFI--------GVRC-----YEAYPNTSLPPSIL 324
Query: 154 I-----------PLLGIT------------------------YI--------LVIAGPTE 170
P+L I+ I LV++GP +
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 171 GPYVSLYA---HLRAI 183
SLY LR
Sbjct: 385 ----SLYGLNLTLRKA 396
Score = 27.7 bits (61), Expect = 4.0
Identities = 22/110 (20%), Positives = 27/110 (24%), Gaps = 29/110 (26%)
Query: 13 AIAKTFAPSSDIQSQGMGD-----IGLR--------HCPWMTPHVYDWIYQ-APAILVLF 58
+ K APS QS+ R H + P D I + V F
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP-ASDLINKDLVKNNVSF 450
Query: 59 INCLFLIMIMWPRLVTQHED----REYQSQGMGDIGLRHCPWMTPHVYDW 104
I P V D R G I R + W
Sbjct: 451 NAKDIQI----P--VYDTFDGSDLRVLS----GSISERIVDCIIRLPVKW 490
Score = 27.3 bits (60), Expect = 5.9
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 24 IQSQGMG 30
Q QGMG
Sbjct: 1626 SQEQGMG 1632
Score = 26.9 bits (59), Expect = 7.3
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 14/60 (23%)
Query: 1 MERA-PLVIVTVWAIAKTFAPS------------SDIQSQGMGDIGLRHCPWMTPHVYDW 47
+ A L+ + +F SD++ G I R + W
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS-GSISERIVDCIIRLPVKW 490
Score = 26.9 bits (59), Expect = 8.8
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 27/126 (21%)
Query: 82 QSQGMGDIGLRHCPWMTPHVYDWIYQAPAILVLFINC-LFLIMIMWVLITKLRSANTVET 140
Q QGMG M +Y + A ++ I + N V
Sbjct: 1627 QEQGMG---------M--DLYK---TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL 1672
Query: 141 ---------QQYRKATKALVVLIPLLGITYIL-VIAGPTEGPYVSLYAHLRAILLSTQGF 190
++ R+ A++ + G + E + + +L +TQ F
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-F 1731
Query: 191 T-VALF 195
T AL
Sbjct: 1732 TQPALT 1737
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.4
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 13/42 (30%)
Query: 139 ETQQYRKATKALVVLIPLLGITYILVIAGPTEGPYVSLYAHL 180
E Q +K +L + Y P +++ A +
Sbjct: 18 EKQALKKLQASLKL--------Y-----ADDSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 1.5
Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 67/236 (28%)
Query: 20 PSSDIQSQGMGDIG--------LR----HCPWMTPHVYDWI----YQAPAILVLFINCLF 63
P+ ++ G+ G C M ++ W+ +P ++ + L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-MDFKIF-WLNLKNCNSPETVLEMLQKLL 206
Query: 64 LIMIMWPRLVTQHEDREYQSQGMGDIGLRHCPWMTPHVYDWIYQAPAILVL---FINCLF 120
+ D + S+ + I L+ + NCL
Sbjct: 207 YQI-----------DPNWTSRSDHSSNI-------KLRIHSIQAELRRLLKSKPYENCL- 247
Query: 121 LIMI-MW-------------VLITKLRSANTVETQQYRKATKALVVLIPLLGITYILVIA 166
L+++ + +L+T R V T + + + +T
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTT-RFKQ-VTDFLSAATTTHISLDHHSMTLT------ 299
Query: 167 GPTEG-PYVSLYAHLRAILLSTQGFTVALFYCFLNTEVQNTLRHHLERWKEARNLG 221
P E + Y R L + T + E +R L W +++
Sbjct: 300 -PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRDGLATWDNWKHVN 351
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.465
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,808,615
Number of extensions: 213466
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 15
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.6 bits)