RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8057
         (243 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 29.9 bits (66), Expect = 0.28
 Identities = 15/190 (7%), Positives = 49/190 (25%), Gaps = 6/190 (3%)

Query: 36  HCPWMTPHVYDWIYQAPAILVLFINCLFLIMIMWPRLVTQHEDREYQSQGMGDIGLRHCP 95
             P       +            +        +        E  +               
Sbjct: 140 CKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETN 199

Query: 96  WMTPHVYDWIYQAPAILVLFINCLFLIMIMWVLITKLRSANTVETQQYRKATKALVVLIP 155
             +  +Y ++      L++   C   ++         +  +    +  ++ T+ +++++ 
Sbjct: 200 NESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVI 259

Query: 156 LLGITYI------LVIAGPTEGPYVSLYAHLRAILLSTQGFTVALFYCFLNTEVQNTLRH 209
              I ++        I       +  ++  + A    T      + Y  +N + +N +  
Sbjct: 260 AFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT 319

Query: 210 HLERWKEARN 219
            L   K    
Sbjct: 320 TLCCGKNPLG 329


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.465 

Gapped
Lambda     K      H
   0.267   0.0348    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 945,239
Number of extensions: 41320
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 6
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.9 bits)