BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8066
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/440 (36%), Positives = 239/440 (54%), Gaps = 22/440 (5%)
Query: 63 NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
N ++++L NGL+VA+ N G F +G+ ID+GSR+E G +H L++LAF ST E+V
Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKST-EHVE 63
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMAR 182
A+A++LE +GG C SSR+ +Y AS + +++++ + V PK +E+E+ +
Sbjct: 64 GRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNY 242
+ ++E++ M+PE +L +++H AAY TLG P +CP I I+ L Y +
Sbjct: 124 LSAEYEIDEVWMKPE--LVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKF 181
Query: 243 YTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVK 302
YTP V A +GV HE +E KY D Q + P I A YTGG
Sbjct: 182 YTPENTVAAFVGVPHEKALELTGKYLGDWQ-----------STHPPITKKVAQYTGG--- 227
Query: 303 EECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXMY 362
E C IP LPEL H+ IG EG+ PD L L+ MY
Sbjct: 228 ESC-IPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMY 286
Query: 363 TRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPID 422
+RLYT+VLN+++++ + A+NH+Y+D+G+F I S P V+V+ +++ D
Sbjct: 287 SRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKD 346
Query: 423 ----ADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDD 478
DE+SRAK QL+S LLMNLE++ ED+GRQVL G + + I IE++ DD
Sbjct: 347 LRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDD 406
Query: 479 IRRVASRLLTSQPSVAARGE 498
I RVA + T + A G+
Sbjct: 407 ISRVAEMIFTGNVNNAGNGK 426
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 213/447 (47%), Gaps = 26/447 (5%)
Query: 64 TQVTTLPNGLRVASEN-RFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
T+ + LPNGL +A+E S T+G+ +D+GSR E +G +HFLE LAF T
Sbjct: 7 TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQ 66
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMAR 182
+ I +E IG + +SR+ +Y A + + + IL D++ + I R
Sbjct: 67 Q-GIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERER 125
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNY 242
I E E ++ + ++ D +H YKD LG L P +I I L Y+
Sbjct: 126 DVIIRESE--EVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 243 YTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301
Y RMV+AG G V+HE LV+ A KYF + ++ PV S G +
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYF----------GHVPKSESPVPLGSPR----GPL 229
Query: 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXM 361
C F + LP +H+ I LEGVS PD+ A ++
Sbjct: 230 PVFCRGERFIKENTLP-TTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP- 287
Query: 362 YTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH--ASAPPSNVKNIVDVLVKELVTM-A 418
+ L S +++ +YAD+GL+ ++ + NV+ IV+ ++KE + +
Sbjct: 288 -SPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKS 346
Query: 419 GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDD 478
G I E++RAK QL++ LL++L+ A+ ED+GRQV+ TG R P E ++ +T+DD
Sbjct: 347 GKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDD 406
Query: 479 IRRVASRLLTSQP-SVAARGELINFPS 504
I A+ L ++P S+ A G P+
Sbjct: 407 IIMWANYRLQNKPVSMVALGNTSTVPN 433
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 213/447 (47%), Gaps = 26/447 (5%)
Query: 64 TQVTTLPNGLRVASEN-RFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
T+ + LPNGL +A+E S T+G+ +D+GSR E +G +HFL+ LAF T
Sbjct: 7 TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQNRPQ 66
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMAR 182
+ I +E IG + +SR+ +Y A + + + IL D++ + I R
Sbjct: 67 Q-GIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERER 125
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNY 242
I E E ++ + ++ D +H YKD LG L P +I I L Y+
Sbjct: 126 DVIIRESE--EVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 243 YTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301
Y RMV+AG G V+HE LV+ A KYF + ++ PV S G +
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYF----------GHVPKSESPVPLGSPR----GPL 229
Query: 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXM 361
C F + LP +H+ I LEGVS PD+ A ++
Sbjct: 230 PVFCRGERFIKENTLP-TTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP- 287
Query: 362 YTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH--ASAPPSNVKNIVDVLVKELVTM-A 418
+ L S +++ +YAD+GL+ ++ + NV+ IV+ ++KE + +
Sbjct: 288 -SPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKS 346
Query: 419 GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDD 478
G I E++RAK QL++ LL++L+ A+ ED+GRQV+ TG R P E ++ +T+DD
Sbjct: 347 GKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDD 406
Query: 479 IRRVASRLLTSQP-SVAARGELINFPS 504
I A+ L ++P S+ A G P+
Sbjct: 407 IIMWANYRLQNKPVSMVALGNTSTVPN 433
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 209/463 (45%), Gaps = 49/463 (10%)
Query: 64 TQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
TQV+ L NG+RVASE CT+GV ID+GSRYE +G +FLE LAF T +
Sbjct: 14 TQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNR-PQ 72
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQ 183
+A+ + +E +G + SSR+ Y A + + +++L D+V + +I R
Sbjct: 73 NALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 184 TIQFELE--NYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
I EL+ + MR ++ + +HA A++ L P +I ++ L YL
Sbjct: 133 VIVRELQENDTSMR----EVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLTEYLST 188
Query: 242 YYTPTRMVVAGI-GVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGI 300
+YT RMV+A GVEH+ L+E A K+F D V S +TG
Sbjct: 189 HYTAPRMVLAAAGGVEHQQLLELAQKHF--------GGVPFTYDDDAVPTLSKCRFTGSQ 240
Query: 301 VKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXX 360
++ GLP L+HV I +EG PD V V N ++
Sbjct: 241 IRHR--------EDGLP-LAHVAIAVEGPGWAHPDLVALQVANAIIGH------------ 279
Query: 361 MYTRLYTNVLNRHHWMFSATAYNH----------AYADTGLFCIHASAPPSNVKNIVDVL 410
Y R Y L+ + S N Y++TGLF + ++ +++ VL
Sbjct: 280 -YDRTYGGGLHSSSPLASIAVTNKLCQSFQTFSICYSETGLFGFYFVCDRMSIDDMMFVL 338
Query: 411 VKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIES 470
+ + + I E+ R K L++ L+ +L+ V ED+GR++L G R + E
Sbjct: 339 QGQWMRLCTSISESEVLRGKNFLRNALVSHLDGTTPVCEDIGRELLTYGRRIPLEEWEER 398
Query: 471 IENVTEDDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSGI 512
+ V +R V S+ + Q P+VA G + P Y I SG+
Sbjct: 399 LAEVDARMVREVCSKYIYDQCPAVAGPGPIEQLPDYNRIRSGM 441
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/466 (25%), Positives = 217/466 (46%), Gaps = 37/466 (7%)
Query: 50 PKVHYSCVKDNDR------NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPS 103
PKV S + + + ++T LPNGL +AS F IGV I +GSRYE
Sbjct: 6 PKVAVSAAAERVKLCPGAEDLEITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANL 65
Query: 104 GVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKI 163
G +H L +LA T++ + I + +E +GG S+R+ Y +DTVM+
Sbjct: 66 GTAHLL-RLASPLTTKGASSFRITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEY 124
Query: 164 LGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCP 223
L +V P+F E+ + Q +++ + +++ +HAAAYK L P CP
Sbjct: 125 LLNVTTAPEFRPWEVTDLQP--QLKVDKAVAFQSPQVGVLENLHAAAYK-TALANPLYCP 181
Query: 224 PASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVL 283
IG I + L +++N +T RM + GIGV+H L + A ++ L +
Sbjct: 182 DYRIGKITSEQLHHFVQNNFTSARMALVGIGVKHSDLKQVAEQF-------------LNI 228
Query: 284 TDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLN 343
++ ATY GG ++E+ L H + EG + + A +
Sbjct: 229 RSGAGTSSAKATYWGGEIREQNG----------HSLVHAAVVTEGAAVGSAE---ANAFS 275
Query: 344 ILMXXXXXXXXXXXXXXMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNV 403
+L + ++LY V F A+A+N Y+D+GLF + + ++
Sbjct: 276 VLQHVLGAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNYSDSGLFGFYTISQAAHA 335
Query: 404 KNIVDVLVKELVTMA-GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRK 462
++ + +L A G + +++++AK QL++ LM++E + ++G + L +G
Sbjct: 336 GEVIRAAMNQLKAAAQGGVTEEDVTKAKNQLKATYLMSVETAQGLLNEIGSEALLSGTHT 395
Query: 463 RPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDI 508
PS + I++VT D+ A + ++ + S+AA G+L + P +++
Sbjct: 396 APSVVAQKIDSVTSADVVNAAKKFVSGKKSMAASGDLGSTPFLDEL 441
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 117/448 (26%), Positives = 209/448 (46%), Gaps = 31/448 (6%)
Query: 62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
++ ++T LPNGL +AS + TIGV I +GSRYE G SH L +LA + T++
Sbjct: 5 QDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLL-RLASSLTTKGA 63
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMA 181
+ I + +E +GG S+R+ Y ++ +M+ L +V P+F E+ A
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEV--A 121
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
Q +++ +T +++ +HAAAY+ N L CP IG + + L +++N
Sbjct: 122 DLQPQLKIDKAVAFQNPQTHVIENLHAAAYR-NALADSLYCPDYRIGKVTSVELHDFVQN 180
Query: 242 YYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301
++T RM + G+GV H L A ++ L + + + A Y GG +
Sbjct: 181 HFTSARMALVGLGVSHPVLKNVA-------------EQLLNIRGGLGLSGAKAKYRGGEI 227
Query: 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXM 361
+E+ L H I E + + A ++L
Sbjct: 228 REQNG----------DSLVHAAIVAESAAIGGAE---ANAFSVLQHVLGANPHVKRGLNA 274
Query: 362 YTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMA-GP 420
+ LY V H F +A+N +Y+D+GLF + + + ++ ++ T+A G
Sbjct: 275 TSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGN 334
Query: 421 IDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIR 480
+ + + AK +L++ LM++E+ E+VG Q LA G PST ++ I+ V + D+
Sbjct: 335 VSNENVQAAKNKLKAKYLMSVESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVI 394
Query: 481 RVASRLLTSQPSVAARGELINFPSYEDI 508
+ A + ++ Q S+AA G L + P +++
Sbjct: 395 KAAKKFVSRQKSMAASGNLGHTPFVDEL 422
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/448 (26%), Positives = 209/448 (46%), Gaps = 31/448 (6%)
Query: 62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
++ ++T LPNGL +AS + TIGV I +GSRYE G SH L +LA + T++
Sbjct: 5 QDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLL-RLASSLTTKGA 63
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMA 181
+ I + +E +GG S+R+ Y ++ +M+ L +V P+F E+ A
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEV--A 121
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
Q +++ +T +++ +HAAAY+ N L CP IG + + L +++N
Sbjct: 122 DLQPQLKIDKAVAFQNPQTHVIENLHAAAYR-NALADSLYCPDYRIGKVTSVELHDFVQN 180
Query: 242 YYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301
++T RM + G+GV H L A ++ L + + + A Y GG +
Sbjct: 181 HFTSARMALVGLGVSHPVLKNVA-------------EQLLNIRGGLGLSGAKAKYRGGEI 227
Query: 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXM 361
+E+ L H I E + + A ++L
Sbjct: 228 REQNG----------DSLVHAAIVAESAAIGGAE---ANAFSVLQHVLGANPHVKRGLNA 274
Query: 362 YTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMA-GP 420
+ LY V H F +A+N +Y+D+GLF + + + ++ ++ T+A G
Sbjct: 275 TSSLYQAVAKGVHNPFDVSAFNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGN 334
Query: 421 IDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIR 480
+ + + AK +L++ LM++E+ E+VG Q LA G PST ++ I+ V + D+
Sbjct: 335 VSNENVQAAKNKLKAKYLMSVESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVI 394
Query: 481 RVASRLLTSQPSVAARGELINFPSYEDI 508
+ A + ++ Q S+AA G L + P +++
Sbjct: 395 KAAKKFVSRQKSMAASGNLGHTPFVDEL 422
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 204/457 (44%), Gaps = 37/457 (8%)
Query: 64 TQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LAF T
Sbjct: 14 TQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG- 72
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQ 183
+A+ + +E +G + S+R+ Y A + L +++L D+V + +I R
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 184 TIQFELENYQMRPEQETLLMDMI----HAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
I EL+ E +T + D++ HA A++ L P ++ ++ L YL
Sbjct: 133 VILQELQ------ENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYL 186
Query: 240 KNYYTPTRMVVAGI-GVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298
+Y RMV+A G+EH L++ A K+F + +D L S +TG
Sbjct: 187 SRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTL--------SPCRFTG 238
Query: 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXX--XXXXXXX 356
+ GLP L+HV I +EG PD V V N ++
Sbjct: 239 SQICHR--------EDGLP-LAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAH 289
Query: 357 XXXXMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVT 416
+ + TN L + S +N YADTGL H ++ +++ VL + +
Sbjct: 290 LSSPLASIAATNKLCQ-----SFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMR 344
Query: 417 MAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTE 476
+ E+ R K L++ L+ +L+ V ED+GR +L G R + + I V
Sbjct: 345 LCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDA 404
Query: 477 DDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSGI 512
+R V S+ Q P+VA G + P Y I SG+
Sbjct: 405 RVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGM 441
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 204/457 (44%), Gaps = 37/457 (8%)
Query: 64 TQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LAF T
Sbjct: 48 TQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG- 106
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQ 183
+A+ + +E +G + S+R+ Y A + L +++L D+V + +I R
Sbjct: 107 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 166
Query: 184 TIQFELENYQMRPEQETLLMDMI----HAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
I EL+ E +T + D++ HA A++ L P ++ ++ L YL
Sbjct: 167 VILQELQ------ENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYL 220
Query: 240 KNYYTPTRMVVAGI-GVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298
+Y RMV+A G+EH L++ A K+F + +D L S +TG
Sbjct: 221 SRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTL--------SPCRFTG 272
Query: 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXX--XXXXXXX 356
+ GLP L+HV I +EG PD V V N ++
Sbjct: 273 SQICHR--------EDGLP-LAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAH 323
Query: 357 XXXXMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVT 416
+ + TN L + S +N YADTGL H ++ +++ VL + +
Sbjct: 324 LSSPLASIAATNKLCQ-----SFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMR 378
Query: 417 MAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTE 476
+ E+ R K L++ L+ +L+ V ED+GR +L G R + + I V
Sbjct: 379 LCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDA 438
Query: 477 DDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSGI 512
+R V S+ Q P+VA G + P Y I SG+
Sbjct: 439 RVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGM 475
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 204/457 (44%), Gaps = 37/457 (8%)
Query: 64 TQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LAF T
Sbjct: 14 TQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG- 72
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQ 183
+A+ + +E +G + S+R+ Y A + L +++L D+V + +I R
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 184 TIQFELENYQMRPEQETLLMDMI----HAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
I EL+ E +T + D++ HA A++ L P ++ ++ L YL
Sbjct: 133 VILQELQ------ENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYL 186
Query: 240 KNYYTPTRMVVAGI-GVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298
+Y RMV+A G+EH L++ A K+F + +D L S +TG
Sbjct: 187 SRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTL--------SPCRFTG 238
Query: 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXX--XXXXXXX 356
+ GLP L+HV I +EG PD V V N ++
Sbjct: 239 SQICHR--------EDGLP-LAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAH 289
Query: 357 XXXXMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVT 416
+ + TN L + S +N YADTGL H ++ +++ VL + +
Sbjct: 290 LSSPLASIAATNKLCQ-----SFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMR 344
Query: 417 MAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTE 476
+ E+ R K L++ L+ +L+ V ED+GR +L G R + + I V
Sbjct: 345 LCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDA 404
Query: 477 DDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSGI 512
+R V S+ Q P+VA G + P Y I SG+
Sbjct: 405 RVVREVCSKYFYDQCPAVAGFGPVEQLPDYNRIRSGM 441
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/448 (25%), Positives = 207/448 (46%), Gaps = 31/448 (6%)
Query: 62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
++ + T LPNGL +AS + IG+ I +GSRYE G SH L +LA + T++
Sbjct: 6 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL-RLASSLTTKGA 64
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMA 181
+ I + +E +GG S+R+ Y +D +M+ L +V P+F E+
Sbjct: 65 SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAAL 124
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
+ ++ + P+ +++ +HAAAY+ N L CP IG + L Y++N
Sbjct: 125 QPQLRIDKAVALQNPQAH--VIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYVQN 181
Query: 242 YYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301
++T RM + G+GV H L + A ++ L + + + A Y GG +
Sbjct: 182 HFTSARMALIGLGVSHPVLKQVAEQF-------------LNIRGGLGLSGAKAKYHGGEI 228
Query: 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXM 361
+E+ L H + E + + A ++L
Sbjct: 229 REQNG----------DSLVHAALVAESAAIGSAE---ANAFSVLQHVLGAGPHVKRGSNA 275
Query: 362 YTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMA-GP 420
+ LY V H F +A+N +Y+D+GLF + + ++ +++ ++ T+A G
Sbjct: 276 TSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGN 335
Query: 421 IDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIR 480
+ ++ AK +L++ LM++E+ ++VG Q LA G PST ++ I+ V + D+
Sbjct: 336 LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVI 395
Query: 481 RVASRLLTSQPSVAARGELINFPSYEDI 508
A + ++ + S+AA G L + P +++
Sbjct: 396 NAAKKFVSGRKSMAASGNLGHTPFIDEL 423
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/448 (25%), Positives = 207/448 (46%), Gaps = 31/448 (6%)
Query: 62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
++ + T LPNGL +AS + IG+ I +GSRYE G SH L +LA + T++
Sbjct: 22 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL-RLASSLTTKGA 80
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMA 181
+ I + +E +GG S+R+ Y +D +M+ L +V P+F E+
Sbjct: 81 SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAAL 140
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
+ ++ + P+ +++ +HAAAY+ N L CP IG + L Y++N
Sbjct: 141 QPQLRIDKAVALQNPQAH--VIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYVQN 197
Query: 242 YYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301
++T RM + G+GV H L + A ++ L + + + A Y GG +
Sbjct: 198 HFTSARMALIGLGVSHPVLKQVAEQF-------------LNIRGGLGLSGAKAKYHGGEI 244
Query: 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXM 361
+E+ L H + E + + A ++L
Sbjct: 245 REQNG----------DSLVHAALVAESAAIGSAE---ANAFSVLQHVLGAGPHVKRGSNA 291
Query: 362 YTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMA-GP 420
+ LY V H F +A+N +Y+D+GLF + + ++ +++ ++ T+A G
Sbjct: 292 TSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGN 351
Query: 421 IDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIR 480
+ ++ AK +L++ LM++E+ ++VG Q LA G PST ++ I+ V + D+
Sbjct: 352 LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVI 411
Query: 481 RVASRLLTSQPSVAARGELINFPSYEDI 508
A + ++ + S+AA G L + P +++
Sbjct: 412 NAAKKFVSGRKSMAASGNLGHTPFIDEL 439
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/448 (25%), Positives = 207/448 (46%), Gaps = 31/448 (6%)
Query: 62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
++ + T LPNGL +AS + IG+ I +GSRYE G SH L +LA + T++
Sbjct: 36 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL-RLASSLTTKGA 94
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMA 181
+ I + +E +GG S+R+ Y +D +M+ L +V P+F E+
Sbjct: 95 SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAAL 154
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
+ ++ + P+ +++ +HAAAY+ N L CP IG + L Y++N
Sbjct: 155 QPQLRIDKAVALQNPQAH--VIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYVQN 211
Query: 242 YYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301
++T RM + G+GV H L + A ++ L + + + A Y GG +
Sbjct: 212 HFTSARMALIGLGVSHPVLKQVAEQF-------------LNIRGGLGLSGAKAKYHGGEI 258
Query: 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXM 361
+E+ L H + E + + A ++L
Sbjct: 259 REQNG----------DSLVHAALVAESAAIGSAE---ANAFSVLQHVLGAGPHVKRGSNA 305
Query: 362 YTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMA-GP 420
+ LY V H F +A+N +Y+D+GLF + + ++ +++ ++ T+A G
Sbjct: 306 TSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGN 365
Query: 421 IDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIR 480
+ ++ AK +L++ LM++E+ ++VG Q LA G PST ++ I+ V + D+
Sbjct: 366 LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVI 425
Query: 481 RVASRLLTSQPSVAARGELINFPSYEDI 508
A + ++ + S+AA G L + P +++
Sbjct: 426 NAAKKFVSGRKSMAASGNLGHTPFIDEL 453
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 207/461 (44%), Gaps = 25/461 (5%)
Query: 54 YSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLA 113
Y+ N T VTTL NGLRVASE CT+GV I +GSRYE +G +F+E LA
Sbjct: 4 YAQTLQNIPETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLA 63
Query: 114 FNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKF 173
F T + A + +E +G + +SR+ + A + + V+++L DVV
Sbjct: 64 FKGTKKRPCA-AFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCAL 122
Query: 174 SEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNN 233
E +I R I EL+ +M + + D +HA A++ L +I +
Sbjct: 123 EESQIEKERGVILQELK--EMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRA 180
Query: 234 TLFTYLKNYYTPTRMVVAGI-GVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTS 292
L +Y+ ++ RMV+A G+ H+ LV+AA ++F + +D +L
Sbjct: 181 DLASYIDTHFKAPRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPIL--------P 232
Query: 293 SATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXX 352
+TG ++ A LP ++HV + +EG DPD V V N ++
Sbjct: 233 RCRFTGSEIR--------ARDDALP-VAHVALAVEGPGWADPDNVVLHVANAII--GRYD 281
Query: 353 XXXXXXXXMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVK 412
+ +RL + H S +N +Y+DTGLF H A P ++ +++
Sbjct: 282 RTFGGGKHLSSRLAALAVE-HKLCHSFQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQG 340
Query: 413 ELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIE 472
E + + E+ RAK L+S ++ L+ V E +G +L G R + I
Sbjct: 341 EWMRLCTSTTESEVKRAKNHLRSAMVAQLDGTTPVCETIGSHLLNYGRRISLEEWDSRIS 400
Query: 473 NVTEDDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSGI 512
V +R V S+ + + P++AA G + Y I SG+
Sbjct: 401 AVDARMVRDVCSKYIYDKCPALAAVGPIEQLLDYNRIRSGM 441
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 196/437 (44%), Gaps = 40/437 (9%)
Query: 68 TLPNGLRVASENRFG-SFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAI 126
TL NG+R+ +E +IG+ + +GSRYE +G+SHFLE + F T+ ++ I
Sbjct: 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQE-I 64
Query: 127 AQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQ 186
A+ + IGG + +S++ Y A + L D+ F +EE+ R+ +
Sbjct: 65 AEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVF 124
Query: 187 FELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPT 246
E++ P+ ++ D++ +A Y ++LG P L ++ N L Y+ +YT
Sbjct: 125 EEIKMVDDTPDD--IVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGD 182
Query: 247 RMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECN 306
+V++ G H+ L++ + F +P + +KP+
Sbjct: 183 YVVISVAGNVHDELIDKIKETFSQVKPTTYNYQG----EKPMF----------------- 221
Query: 307 IPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXMYTRLY 366
+P E +H+ +G G+ D D +LN ++ M +RL+
Sbjct: 222 LPNRIVRKKETEQAHLCLGYPGLPIGDKDVYALVLLNNVL-----------GGSMSSRLF 270
Query: 367 TNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGP-IDADE 425
++ + +S +Y+ ++ D+G+ I+A + ++V + + +A + E
Sbjct: 271 QDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKE 330
Query: 426 LSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASR 485
L K+QL+ L+++LE+ + G+ L + IE I V + D+ R+A
Sbjct: 331 LENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKI 390
Query: 486 LLTSQPSVA---ARGEL 499
LL++ PS++ A GEL
Sbjct: 391 LLSASPSISLINANGEL 407
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 99/465 (21%), Positives = 193/465 (41%), Gaps = 58/465 (12%)
Query: 65 QVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKD 124
+VT L NG+ VA+E+ ++GV+ SG+ E PY +GVS+ + + +++K+
Sbjct: 2 EVTQLSNGIVVATEHNPAHTASVGVVFGSGAANENPYNNGVSNLWKNI-------FLSKE 54
Query: 125 AIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPK--------FSEE 176
A + K G SRD Y S+ D + L ++ K F
Sbjct: 55 NSAVA-AKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEAT 113
Query: 177 EINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLF 236
+ ++ +Q FE ++ R +++ +H+ A+++ L LP S+ + L
Sbjct: 114 KKSVLKQVQDFEDNDHPNR------VLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLE 167
Query: 237 TYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLT--DKPVIDTSS 293
++ N++ + VV G G ++HE LV + I+ K+L L KPV+ +
Sbjct: 168 SFANNHFLNSNAVVVGTGNIKHEDLVNS------------IESKNLSLQTGTKPVLKKKA 215
Query: 294 ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXX 353
A + + +P + + + +EG P++ A + +
Sbjct: 216 AFLGSEVRLRDDTLPK----------AWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFE 265
Query: 354 XXXXXXXMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVL--- 410
+ +L N+ + + ++ +Y D+GL+ S NV I D++
Sbjct: 266 PASRLQGI--KLLDNI-QEYQLCDNFNHFSLSYKDSGLWGF--STATRNVTMIDDLIHFT 320
Query: 411 VKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFED--VGRQVLATGHRKRPSTYI 468
+K+ + + E+ RAK L+ L E+ V + +G +VL G +
Sbjct: 321 LKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAF 380
Query: 469 ESIENVTEDDIRRVASRLLTSQP-SVAARGELINFPSYEDIHSGI 512
+ I+ +T D++ A + L Q ++A G++ Y I S +
Sbjct: 381 KKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDM 425
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/466 (21%), Positives = 193/466 (41%), Gaps = 59/466 (12%)
Query: 65 QVTTLPNGLRVASE-NRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
+VT L NG+ VA+E N ++GV+ SG+ E PY +GVS+ + + +++K
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI-------FLSK 54
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPK--------FSE 175
+ A + K G SRD Y S+ D + L ++ K F
Sbjct: 55 ENSAVA-AKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEA 113
Query: 176 EEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTL 235
+ ++ +Q FE ++ R +++ +H+ A+++ L LP S+ + L
Sbjct: 114 TKKSVLKQVQDFEDNDHPNR------VLEHLHSTAFQNTPLSLPTRGTLESLENLVVADL 167
Query: 236 FTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLT--DKPVIDTS 292
++ N++ + VV G G ++HE LV + I+ K+L L KPV+
Sbjct: 168 ESFANNHFLNSNAVVVGTGNIKHEDLVNS------------IESKNLSLQTGTKPVLKKK 215
Query: 293 SATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXX 352
+A + + +P + + + +EG P++ A + +
Sbjct: 216 AAFLGSEVRLRDDTLPK----------AWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAF 265
Query: 353 XXXXXXXXMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVL-- 410
+ +L N+ + + ++ +Y D+GL+ S NV I D++
Sbjct: 266 EPASRLQGI--KLLDNI-QEYQLCDNFNHFSLSYKDSGLWGF--STATRNVTMIDDLIHF 320
Query: 411 -VKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFED--VGRQVLATGHRKRPSTY 467
+K+ + + E+ RAK L+ L E+ V + +G +VL G +
Sbjct: 321 TLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEA 380
Query: 468 IESIENVTEDDIRRVASRLLTSQP-SVAARGELINFPSYEDIHSGI 512
+ I+ +T D++ A + L Q ++A G++ Y I S +
Sbjct: 381 FKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDM 426
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 10/202 (4%)
Query: 69 LPNGLRVASENRFGSF-CTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIA 127
L NGLRV +E G+ +G + +G+R E SGVSHFLE F + DA+A
Sbjct: 7 LRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHXVFKGPE---DXDALA 63
Query: 128 --QSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTI 185
++ ++ G + +S + +Y + ++ + +LRP EE+ + I
Sbjct: 64 VNRAFDRXGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAK-LLRPALREEDFQTEKLVI 122
Query: 186 QFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTP 245
E+ YQ RP + A ++ + LG L SI + Y + Y P
Sbjct: 123 LEEIARYQDRPGFXA--YEWARARFFQGHPLGNSVLGTRESITALTREGXAAYHRRRYLP 180
Query: 246 TRMVVAGIG-VEHEALVEAANK 266
V+A G V+ + L+ A +
Sbjct: 181 KNXVLAATGRVDFDRLLAEAER 202
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 12/208 (5%)
Query: 67 TTLPNGLR-VASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDA 125
TTLPNGL+ V E+ V GS E +GV+H LE + F T + V
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKD-VGPGE 68
Query: 126 IAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGD----VVLRPKFSEEEINMA 181
++ + +GG + ++RD Y +S L VM + D +V+ + ++EI +
Sbjct: 69 FSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVI 128
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
+ ++ ++ E L+ AA+Y + +P + I + + + K
Sbjct: 129 AEERRWRTDDKPRSKAYEALM-----AASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKR 183
Query: 242 YYTPTRMVVAGIG-VEHEALVEAANKYF 268
+Y P V +G VEHEA+ A + +
Sbjct: 184 WYGPNNATVVVVGDVEHEAVFRLAEQTY 211
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 12/208 (5%)
Query: 67 TTLPNGLR-VASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDA 125
TTLPNGL+ V E+ V GS E +GV+H LE + F T + V
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKD-VGPGE 68
Query: 126 IAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGD----VVLRPKFSEEEINMA 181
++ + +GG + ++RD Y +S L VM + D +V+ + ++EI +
Sbjct: 69 FSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVI 128
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
+ ++ ++ E L+ AA+Y + +P + I + + + K
Sbjct: 129 AEERRWRTDDKPRSKAYEALM-----AASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKR 183
Query: 242 YYTPTRMVVAGIG-VEHEALVEAANKYF 268
+Y P V +G VEHEA+ A + +
Sbjct: 184 WYGPNNATVVVVGDVEHEAVFRLAEQTY 211
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|D Chain D, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 424
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 96/435 (22%), Positives = 160/435 (36%), Gaps = 60/435 (13%)
Query: 68 TLPNGLRVA-SENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKL---AFNSTSEYVNK 123
T P+G +V ENR + V D+GS E GV+ L S +++
Sbjct: 8 TAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDE 67
Query: 124 DAIAQSLEKIGGICD--CLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMA 181
+AIA L IG + R +F ++ + ++ + IL D++ P F +
Sbjct: 68 NAIADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERE 127
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
R L Q +P ++L AY + G + A++ I+ + L ++ +
Sbjct: 128 RARAIAGLREAQTQPG--SILGRRFTELAYGKHPYG--HVSSVATLQKISRDQLVSFHRT 183
Query: 242 YYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301
+Y VV +G A E + P T P+ D + T V
Sbjct: 184 HYVARTAVVTLVGDITRAEAETIAQQLTADLPAGA-------TLPPLPDPAMPRAT---V 233
Query: 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXM 361
+ N T A H+ IG+ + DPDF P V N +
Sbjct: 234 ERIANPATQA---------HIAIGMPTLKRGDPDFFPLVVGNYAL----------GGGGF 274
Query: 362 YTRLYTNVLNRHHWMFSATAYNHAYADTGLFCI-------HASAPPSNVKNIVDVLVKEL 414
+RL + ++ + A +Y GLF I A + +D ++E
Sbjct: 275 ESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLRE- 333
Query: 415 VTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYI----ES 470
GP DA EL AK L + + L++ + QV G+ P Y+ E
Sbjct: 334 ----GPTDA-ELQAAKDNLINGFALRLDSNAKILG----QVAVIGYYGLPLDYLDHYTER 384
Query: 471 IENVTEDDIRRVASR 485
++ VT + +R +R
Sbjct: 385 VQAVTVEQVREAFAR 399
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
E + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 EHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSE 175
P F E
Sbjct: 142 SPLFDE 147
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 11 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 68
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 69 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 128
Query: 170 RPKFSE 175
P F E
Sbjct: 129 SPLFDE 134
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 53 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 110
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 111 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 170
Query: 170 RPKFSE 175
P F E
Sbjct: 171 SPLFDE 176
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSE 175
P F E
Sbjct: 142 SPLFDE 147
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSE 175
P F E
Sbjct: 142 SPLFDE 147
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSE 175
P F E
Sbjct: 142 SPLFDE 147
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHF
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFC 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
E + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 EHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSE 175
P F E
Sbjct: 142 CPLFDE 147
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHF
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFC 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSE 175
P F E
Sbjct: 142 CPLFDE 147
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 155 SGLDTVMKILGDVVLRPKFSEEEI---NMARQTIQFELENYQMRPE 197
+G D ++++L F+EEEI N+ R+T+ LENY++ PE
Sbjct: 171 TGQDAIIRLLSKACRNESFTEEEISAXNLDRKTVVPLLENYKVGPE 216
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 156 GLDTVMKILGDVVLRPKFSEEEI---NMARQTIQFELENYQMRPE 197
G D V+++L F+EEE+ N+ R+TI LENY + PE
Sbjct: 163 GQDAVIRLLSKACRNDPFTEEEMTAMNLDRKTIVPYLENYTIGPE 207
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 156 GLDTVMKILGDVVLRPKFSEEEI---NMARQTIQFELENYQMRPE 197
G D V+++L F+EEE N+ R+TI LENY + PE
Sbjct: 164 GQDAVIRLLSKACRNDPFTEEEXTAXNLDRKTIVPYLENYTIGPE 208
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 94 GSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAA 153
GS + P G+SHF E + F T +Y ++ +Q L + G + +S + Y +
Sbjct: 95 GSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 154
Query: 154 TSGLDTVMKILGDVVLRPKF 173
L+ + L P F
Sbjct: 155 HEHLEGALDRFAQFFLCPLF 174
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 94 GSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAA 153
GS + P G+SHF E + F T +Y ++ +Q L + G + +S + Y +
Sbjct: 54 GSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 113
Query: 154 TSGLDTVMKILGDVVLRPKF 173
L+ + L P F
Sbjct: 114 HEHLEGALDRFAQFFLCPLF 133
>pdb|1QJH|A Chain A, Protein Aggregation And Alzheimer's Disease.
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization
Length = 101
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 166 DVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHA 208
++VL P + ++ + ++ IQ LENY R E+ +L M+ A
Sbjct: 7 NIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLMVLA 49
>pdb|3GO9|A Chain A, Predicted Insulinase Family Protease From Yersinia Pestis
Length = 492
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 25/222 (11%)
Query: 61 DRNTQVTTLPNGLR---VASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNST 117
D Q L NG +A+ R + +I+++GS E G +H L +LA S+
Sbjct: 23 DPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALXSS 82
Query: 118 SEYVNKDAIAQSLEKIG-----GICDCLSSRDTFIYAASAATSGLDTV---MKILGDVVL 169
+ + A QSL + G + ++S D +Y+ S + D + + L D
Sbjct: 83 ASFT--PAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAG 140
Query: 170 RPKFSEEEINMARQTIQFELENYQMRPE--QETLLMDMIHAAAYKDNTLGLPKLCPPASI 227
SE+ +N A T + + P+ QE + ++ + G P P
Sbjct: 141 NLAVSEQTVNAALNTATDPIATF---PQNIQEPWWRYRLKGSSLIGHDPGQPVTQP---- 193
Query: 228 GVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYF 268
++ L + + +YTP + +G V+ ++ +K F
Sbjct: 194 --VDVEKLKQFYQQWYTPDAXTLYVVGNVDSRSIAAQISKAF 233
>pdb|1CQM|A Chain A, Protein Aggregation And Alzheimer's Disease:
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization.
pdb|1CQM|B Chain B, Protein Aggregation And Alzheimer's Disease:
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization.
pdb|1CQN|A Chain A, Protein Aggregation And Alzheimer's Disease:
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization.
pdb|1CQN|B Chain B, Protein Aggregation And Alzheimer's Disease:
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization
Length = 101
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 166 DVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLL 202
++VL P + ++ + ++ IQ LENY R E+ +L
Sbjct: 7 NIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAIL 43
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 33/80 (41%)
Query: 94 GSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAA 153
GS + P G+SHF + F T +Y ++ +Q L + G + +S + Y +
Sbjct: 95 GSLSDPPNIPGLSHFCFHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 154
Query: 154 TSGLDTVMKILGDVVLRPKF 173
L+ + L P F
Sbjct: 155 HEHLEGALDRFAQFFLCPLF 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,476,533
Number of Sequences: 62578
Number of extensions: 558389
Number of successful extensions: 1243
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1145
Number of HSP's gapped (non-prelim): 41
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)