Query psy8066
Match_columns 529
No_of_seqs 231 out of 1803
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 17:31:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 4.2E-63 1.4E-67 519.9 51.8 435 61-513 3-451 (475)
2 3eoq_A Putative zinc protease; 100.0 1.1E-60 3.8E-65 491.6 47.0 401 64-500 2-405 (406)
3 3hdi_A Processing protease; CA 100.0 4.3E-60 1.5E-64 489.5 46.3 407 64-506 2-411 (421)
4 1pp9_A Ubiquinol-cytochrome C 100.0 1.1E-58 3.8E-63 482.6 47.8 430 60-512 10-441 (446)
5 1hr6_B Beta-MPP, mitochondrial 100.0 5.6E-58 1.9E-62 476.8 49.2 433 61-513 4-442 (443)
6 3ami_A Zinc peptidase; alpha/b 100.0 8.5E-58 2.9E-62 475.8 43.7 415 61-508 4-431 (445)
7 1pp9_B Ubiquinol-cytochrome C 100.0 2.8E-56 9.7E-61 463.3 48.8 418 61-508 21-439 (439)
8 3gwb_A Peptidase M16 inactive 100.0 2.5E-55 8.7E-60 455.5 45.9 412 60-505 10-427 (434)
9 3amj_B Zinc peptidase inactive 100.0 2.8E-54 9.6E-59 446.3 43.9 408 62-504 2-419 (424)
10 3cx5_A Cytochrome B-C1 complex 100.0 3.4E-54 1.2E-58 446.5 43.3 414 65-512 2-426 (431)
11 3d3y_A Uncharacterized protein 100.0 4.2E-50 1.4E-54 414.9 41.4 395 67-500 6-423 (425)
12 3go9_A Insulinase family prote 100.0 3.5E-50 1.2E-54 422.4 39.7 410 61-513 23-462 (492)
13 1q2l_A Protease III; hydrolase 100.0 2.4E-50 8.4E-55 457.1 41.2 412 59-501 16-441 (939)
14 3cww_A Insulysin, insulin-degr 100.0 5.3E-47 1.8E-51 431.9 37.0 412 58-500 29-456 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 1.2E-45 4.2E-50 420.6 32.2 407 60-501 34-486 (995)
16 3s5m_A Falcilysin; M16 metallo 100.0 2E-43 6.7E-48 398.4 37.0 402 60-489 83-575 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 2.3E-42 8E-47 348.1 28.5 350 73-508 1-352 (352)
18 1q2l_A Protease III; hydrolase 100.0 3.1E-36 1.1E-40 341.5 29.8 419 36-500 474-907 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 1E-33 3.4E-38 322.5 30.6 393 67-505 556-981 (995)
20 3cww_A Insulysin, insulin-degr 100.0 7.3E-33 2.5E-37 315.4 33.6 428 37-503 493-937 (990)
21 3s5m_A Falcilysin; M16 metallo 100.0 1.7E-29 5.9E-34 285.2 20.8 395 70-500 724-1174(1193)
22 3ih6_A Putative zinc protease; 99.9 2.2E-23 7.5E-28 191.4 21.3 170 318-500 23-195 (197)
23 3ih6_A Putative zinc protease; 98.3 1.2E-05 4.2E-10 72.5 13.7 162 81-254 21-192 (197)
24 3amj_B Zinc peptidase inactive 98.1 0.00015 5.2E-09 73.5 19.1 170 318-501 24-200 (424)
25 3hdi_A Processing protease; CA 98.0 0.00035 1.2E-08 70.8 19.6 177 319-513 23-205 (421)
26 3cx5_A Cytochrome B-C1 complex 98.0 0.00033 1.1E-08 71.1 19.3 171 318-513 21-198 (431)
27 3eoq_A Putative zinc protease; 98.0 0.00018 6.2E-09 72.6 17.1 177 319-513 23-205 (406)
28 3cx5_B Cytochrome B-C1 complex 97.9 0.00045 1.5E-08 68.2 18.7 171 319-512 12-185 (352)
29 1hr6_B Beta-MPP, mitochondrial 97.9 0.00036 1.2E-08 71.2 18.1 166 318-500 27-198 (443)
30 3gwb_A Peptidase M16 inactive 97.9 0.00025 8.7E-09 72.1 15.7 167 318-501 34-207 (434)
31 3ami_A Zinc peptidase; alpha/b 97.8 0.00095 3.2E-08 68.2 18.9 166 318-500 27-199 (445)
32 1pp9_A Ubiquinol-cytochrome C 97.8 0.0005 1.7E-08 70.3 16.8 165 319-500 34-204 (446)
33 1pp9_B Ubiquinol-cytochrome C 97.8 0.00077 2.6E-08 68.6 17.5 163 318-498 43-211 (439)
34 3d3y_A Uncharacterized protein 97.8 0.00048 1.6E-08 69.7 15.8 170 319-500 24-210 (425)
35 1hr6_A Alpha-MPP, mitochondria 97.6 0.00098 3.3E-08 68.8 15.8 164 319-500 26-195 (475)
36 3go9_A Insulinase family prote 95.6 0.19 6.6E-06 51.7 15.3 184 76-270 258-464 (492)
37 3lh2_S 4E10_1VI7A_S0_002_N (T8 27.0 1.3E+02 0.0044 21.3 5.4 47 123-169 19-65 (76)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=4.2e-63 Score=519.91 Aligned_cols=435 Identities=39% Similarity=0.661 Sum_probs=388.9
Q ss_pred CCCeEEEEcCCCCEEEEEecCCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEEe
Q psy8066 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCL 140 (529)
Q Consensus 61 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~~ 140 (529)
++.++.++|+||++|++.+.+.+.+++.+++++|+++|++++.|++||+|||+|+||.++ +..++.+.++.+|+.+|++
T Consensus 3 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~-~~~~~~~~le~~G~~~na~ 81 (475)
T 1hr6_A 3 TDNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-EGRAMAETLELLGGNYQCT 81 (475)
T ss_dssp TTCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTB-CHHHHHHHHHHTTSCEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCC-CHHHHHHHHHHcCCEEEEE
Confidence 467799999999999988777799999999999999999999999999999999999998 6789999999999999999
Q ss_pred eccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCCC
Q psy8066 141 SSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220 (529)
Q Consensus 141 t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~ 220 (529)
|+.+.|.|++++++++++.+|++|.|++.+|.|++++|+++|..+++|+++..++| ...+.+.++..+|++|||+++.
T Consensus 82 t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
T 1hr6_A 82 SSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKP--ELVLPELLHTAAYSGETLGSPL 159 (475)
T ss_dssp ECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSCS
T ss_pred EccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999877766 6899999999999999999999
Q ss_pred CCCccccCCCCHHHHHHHHHhhccCCCeEEEEecCCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCCe
Q psy8066 221 LCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGI 300 (529)
Q Consensus 221 ~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (529)
+|+.++|++++.++|++||++||+|+||+++++|+++++++++++++|+.+|..... +.. ..+.+.++.
T Consensus 160 ~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~---------~~~--~~~~~~~~~ 228 (475)
T 1hr6_A 160 ICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPP---------ITK--KVAQYTGGE 228 (475)
T ss_dssp SCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCC---------CCC--CCCCCCCEE
T ss_pred cCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCC---------CCC--CCCCCcCCe
Confidence 999999999999999999999999999999999999999999999999996543110 000 112233333
Q ss_pred eEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEe
Q psy8066 301 VKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSAT 380 (529)
Q Consensus 301 ~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~ 380 (529)
..+... +.. .+..+++++.++|+++++++++.+++.|++.|||++++|++||||+||.++||++||+++|++|+++
T Consensus 229 ~~~~~~-~~~---~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~ 304 (475)
T 1hr6_A 229 SCIPPA-PVF---GNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCV 304 (475)
T ss_dssp EEECCC-CCC---SSSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEE
T ss_pred EEEecc-ccc---CCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEE
Confidence 333321 000 0013678999999988888899999999999999999999999999999999999999999999999
Q ss_pred eeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q psy8066 381 AYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG----PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVL 456 (529)
Q Consensus 381 a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~----~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~ 456 (529)
+++..+.+.|.|.|++.++|++++++++.+.++++++.+ ++|++||+++|+.++.++....+++..+++.++.+++
T Consensus 305 s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (475)
T 1hr6_A 305 AFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVL 384 (475)
T ss_dssp EEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred EeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 998888888999999999999999999999999999976 5999999999999999999999999999999998766
Q ss_pred hcCCCCChhHHHHHhccCCHHHHHHHHHHhccC----------CCeEEEEcCCCCCCCHHHHHHHhh
Q psy8066 457 ATGHRKRPSTYIESIENVTEDDIRRVASRLLTS----------QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 457 ~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~----------~~~~~vvG~~~~~p~~~~~~~~~~ 513 (529)
..|.....+++.+.|++||++||++++++++.+ +++++++|+...+|..+++.+.+.
T Consensus 385 ~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 451 (475)
T 1hr6_A 385 MHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG 451 (475)
T ss_dssp HHSCCCCHHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred hcCCCCCHHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence 567665688999999999999999999999987 689999999999999999999998
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-60 Score=491.58 Aligned_cols=401 Identities=22% Similarity=0.295 Sum_probs=362.3
Q ss_pred eEEEEcCCCCEEEEEecC-CCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEEeec
Q psy8066 64 TQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS 142 (529)
Q Consensus 64 ~~~~~L~NGl~v~~~~~~-~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~~t~ 142 (529)
+++++|+||++|++.+.+ .+.+++.+++++|+++|+++..|++||+|||+|+||.++ +..++.+.++.+|+.+|++|+
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~-~~~~~~~~l~~~G~~~na~t~ 80 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDM-DALAVNRAFDRMGAQYNAFTS 80 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTC-CHHHHHHHHHHTTCEEEEEEC
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCCccceec
Confidence 478999999999987665 489999999999999999999999999999999999998 678999999999999999999
Q ss_pred cceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCCCCC
Q psy8066 143 RDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLC 222 (529)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~g 222 (529)
.+.|.|++++++++++.+|+++.+++ +|.|++++|+++|..+.+|+++..++| ...+.+.+.+.+|++|||+++.+|
T Consensus 81 ~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~p~~~~~~G 157 (406)
T 3eoq_A 81 EEATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRP--GFMAYEWARARFFQGHPLGNSVLG 157 (406)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTTCGGGCCSSC
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCCCCCcC
Confidence 99999999999999999999999999 999999999999999999999888777 689999999999999999999999
Q ss_pred CccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCCee
Q psy8066 223 PPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301 (529)
Q Consensus 223 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (529)
+.++|++++.++|++||++||+|+||+++++| +++++++++++++|+.+|+... . .+ . .+....++..
T Consensus 158 ~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~-~-------~~-~--~~~~~~~~~~ 226 (406)
T 3eoq_A 158 TRESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEA-E-------RA-Y--PPLTPAFGVE 226 (406)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCC-C-------CC-C--CCCCCCCEEE
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCC-C-------CC-C--CCCCCCCceE
Confidence 99999999999999999999999999999999 9999999999999999664210 0 01 0 1111123333
Q ss_pred EEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEee
Q psy8066 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATA 381 (529)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a 381 (529)
.+..+. .+++++.++|++++.++++++++.|++.||||+. +|+||++||+ .|++|++++
T Consensus 227 ~~~~~~---------~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg~~-----------~srL~~~lre-~gl~y~~~s 285 (406)
T 3eoq_A 227 ERPYEK---------ARALYLVALFPGVAYQEEARFPGQVLAHLLGEEG-----------SGRLHFALVD-KGLAEVASF 285 (406)
T ss_dssp EEECTT---------CSSEEEEEEEECCCTTCTTHHHHHHHHHHHHCTT-----------TSHHHHHTTT-TTSEEEEEE
T ss_pred EEecCC---------ccceEEEEEecCCCCCCchHHHHHHHHHHhCCCc-----------chHHHHHHHH-cCCeeEEEE
Confidence 444331 1579999999999999999999999999999753 3999999999 899999999
Q ss_pred eccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCC
Q psy8066 382 YNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGH 460 (529)
Q Consensus 382 ~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (529)
++..+.+.|.|.+++.++|++.+++++.+.++|+++++ ++|++||+++|+.++.++....+++..++..++...+.++.
T Consensus 286 ~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~ 365 (406)
T 3eoq_A 286 GLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGR 365 (406)
T ss_dssp EEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSS
T ss_pred EecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 99888889999999999999999999999999999986 89999999999999999999999999999999988887787
Q ss_pred CCChhHHHHHhccCCHHHHHHHHHHhccCCCeEEEEcCCC
Q psy8066 461 RKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELI 500 (529)
Q Consensus 461 ~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~vvG~~~ 500 (529)
....+++.+.|++||++||++++++|+.++..++++||..
T Consensus 366 ~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~vvGp~~ 405 (406)
T 3eoq_A 366 YLSLEEVKARVQRVTSREVNALLERGFLEKGLYYLVLPHG 405 (406)
T ss_dssp CCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCEEEEEECCC
T ss_pred CCCHHHHHHHHHhCCHHHHHHHHHHhcCcccEEEEECCCC
Confidence 8889999999999999999999999999876699999874
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=4.3e-60 Score=489.54 Aligned_cols=407 Identities=24% Similarity=0.432 Sum_probs=366.1
Q ss_pred eEEEEcCCCCEEEEEecC-CCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEEeec
Q psy8066 64 TQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS 142 (529)
Q Consensus 64 ~~~~~L~NGl~v~~~~~~-~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~~t~ 142 (529)
++.++|+||++|++.+.+ .+.+++.+++++|+++|+.+..|++||+|||+|.||.++ +..++.+.++.+|+.+|++|+
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~-~~~~~~~~l~~~G~~~na~t~ 80 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTR-SAQEIAEFFDSIGGQVNAFTS 80 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSS-BHHHHHHHHHTTTSCEEEEEC
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCC-CHHHHHHHHHHhCCceeeeec
Confidence 578999999999987665 589999999999999999999999999999999999998 678999999999999999999
Q ss_pred cceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCCCCC
Q psy8066 143 RDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLC 222 (529)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~g 222 (529)
.+.|.|++++++++++.+|+++.+++.+|.|++++|+++|..+.+|+++..++| ...+.+.+.+.+|++|||+++.+|
T Consensus 81 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~p~~~~~~G 158 (421)
T 3hdi_A 81 KEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTP--DDIVHDLLSSATYGKHSLGYPILG 158 (421)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHTTSGGGSCTTC
T ss_pred cceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHhcCCCCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999988877 689999999999999999999999
Q ss_pred CccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCCee
Q psy8066 223 PPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301 (529)
Q Consensus 223 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (529)
+.++|++++.++|++||++||+|+||+++++| ++ ++++++++++|+.+|..... +.. ..+.+.+...
T Consensus 159 ~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~---------~~~--~~~~~~~~~~ 226 (421)
T 3hdi_A 159 TVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYN---------YQG--EKPMFLPNRI 226 (421)
T ss_dssp CHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCC---------CCC--CCCCCCCCEE
T ss_pred CHHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCC---------CCC--CCCCCCCceE
Confidence 99999999999999999999999999999999 99 99999999999997643111 011 1112223333
Q ss_pred EEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEee
Q psy8066 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATA 381 (529)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a 381 (529)
....+ .+++++.++|++++.++++++++.|++.|||++. .|+||++||++.|++|++++
T Consensus 227 ~~~~~----------~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~-----------~srL~~~lRe~~glay~~~s 285 (421)
T 3hdi_A 227 VRKKE----------TEQAHLCLGYPGLPIGDKDVYALVLLNNVLGGSM-----------SSRLFQDIREKRGLCYSVFS 285 (421)
T ss_dssp EEECC----------CSEEEEEEEEECCCTTCTTHHHHHHHHHHHTSSS-----------SSHHHHHHTTTTCCCSCEEE
T ss_pred EecCC----------CCceEEEEEEecCCCCCchHHHHHHHHHHhCCCc-----------ccHHHHHHHHhcCCEEEEEE
Confidence 33333 2679999999999888999999999999999753 39999999999999999999
Q ss_pred eccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCC
Q psy8066 382 YNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGH 460 (529)
Q Consensus 382 ~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (529)
++..+.+.|.|.+++.++|++++++++.+.++++++++ ++|++||+++|+.+++++....+++..++..++...+..+.
T Consensus 286 ~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~ 365 (421)
T 3hdi_A 286 YHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKK 365 (421)
T ss_dssp EEEECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred eecccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Confidence 98888889999999999999999999999999999976 79999999999999999999999999999988877776777
Q ss_pred CCChhHHHHHhccCCHHHHHHHHHHhccCCCeEEEEcCCCCCCCHH
Q psy8066 461 RKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYE 506 (529)
Q Consensus 461 ~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~vvG~~~~~p~~~ 506 (529)
....+++.+.|++||++||++++++++..+.+++++||...+|..+
T Consensus 366 ~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~vvgp~~~ip~~~ 411 (421)
T 3hdi_A 366 HRSLDEMIEQINAVQKQDVSRLAKILLSASPSISLINANGELPKAL 411 (421)
T ss_dssp CCCHHHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEEESSCSCCSCS
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHcccCcEEEEECchhcCcchh
Confidence 7788999999999999999999999994468999999999999653
No 4
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.1e-58 Score=482.60 Aligned_cols=430 Identities=29% Similarity=0.445 Sum_probs=375.6
Q ss_pred CCCCeEEEEcCCCCEEEEEecCCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEE
Q psy8066 60 NDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139 (529)
Q Consensus 60 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~ 139 (529)
..+.++..+|+||++|++.+.+.+.+++.+++++|++.|+.++.|++|+++||+|.||.+++ ..++.+.++.+|+.+|+
T Consensus 10 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~-~~~~~~~l~~~G~~~na 88 (446)
T 1pp9_A 10 SVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRP-GNALEKEVESMGAHLNA 88 (446)
T ss_dssp TSCCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSST-TTHHHHHHHHTTCEEEE
T ss_pred cccCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCC-HHHHHHHHHHcCCEEEE
Confidence 34677899999999999987777899999999999999999999999999999999999984 56899999999999999
Q ss_pred eeccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCC
Q psy8066 140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219 (529)
Q Consensus 140 ~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~ 219 (529)
+|+.+.|.|++++++++++.+|+++.|++.+|.|++++|+++|..+.+|++...++| ...+.+.+.+.+|++|||+++
T Consensus 89 ~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 166 (446)
T 1pp9_A 89 YSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSM--RDVVFNYLHATAFQGTPLAQS 166 (446)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSC
T ss_pred EEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCH--HHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999887776 678999999999999999999
Q ss_pred CCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccC
Q psy8066 220 KLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298 (529)
Q Consensus 220 ~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (529)
.+|+.++|++++.++|++||++||+|+||+++++| +++++++++++++|+.+|...... .+..+ ..+.+.+
T Consensus 167 ~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~-------~~~~~-~~~~~~~ 238 (446)
T 1pp9_A 167 VEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDED-------AVPTL-SPCRFTG 238 (446)
T ss_dssp SSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSS-------CCCCC-CCCCCCC
T ss_pred CcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCC-------ccccC-CCCCCCC
Confidence 99999999999999999999999999999999999 999999999999999976432110 01110 0112223
Q ss_pred CeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEE
Q psy8066 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFS 378 (529)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~ 378 (529)
..+.+.... .+++++.++|+++++++++++++.|++.|||++.. +.| +|+|++|+||++||+ .|++|+
T Consensus 239 ~~~~~~~~~---------~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~-~glay~ 306 (446)
T 1pp9_A 239 SQICHREDG---------LPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAAT-NKLCQS 306 (446)
T ss_dssp EEEEEEETT---------SSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHH-HTCCSE
T ss_pred ceEEEecCC---------ccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHh-cCCeEE
Confidence 333322211 25789999999998888999999999999986432 222 456788999999996 589999
Q ss_pred EeeeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhc
Q psy8066 379 ATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLAT 458 (529)
Q Consensus 379 v~a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (529)
+++++..+.+.|.|.+++.++|++++++++.+.++++++++++|++||+++|+.+++++....+++..+++.++.+++..
T Consensus 307 ~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (446)
T 1pp9_A 307 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTY 386 (446)
T ss_dssp EEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHT
T ss_pred EEEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 99988777788999999999999999999999999999876899999999999999999999999998888888777556
Q ss_pred CCCCChhHHHHHhccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHh
Q psy8066 459 GHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGI 512 (529)
Q Consensus 459 ~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~-~~~~~vvG~~~~~p~~~~~~~~~ 512 (529)
|.....+++.+.|++||++||++++++|+.+ +.+++++|+.+.+|.++.|+..+
T Consensus 387 g~~~~~~~~~~~i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 441 (446)
T 1pp9_A 387 GRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGM 441 (446)
T ss_dssp SSCCCHHHHHHHHHTCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTT
T ss_pred CCCCCHHHHHHHHHcCCHHHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhH
Confidence 6666688899999999999999999999986 68999999999999999988764
No 5
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=5.6e-58 Score=476.83 Aligned_cols=433 Identities=30% Similarity=0.443 Sum_probs=375.9
Q ss_pred CCCeEEEEcCCCCEEEEEecCC-CeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEE
Q psy8066 61 DRNTQVTTLPNGLRVASENRFG-SFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139 (529)
Q Consensus 61 ~~~~~~~~L~NGl~v~~~~~~~-~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~ 139 (529)
.+.++.++|+||++|++.+.+. +.+.+.+++++|++.|+.+..|++|+++||+|.||.++ +..++.+.++.+|+++|+
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~-~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNR-PQQGIELEIENIGSHLNA 82 (443)
T ss_dssp -CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSC-BHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCC-CHHHHHHHHHHcCCeEEE
Confidence 3567899999999999877765 48999999999999999999999999999999999998 677999999999999999
Q ss_pred eeccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCC
Q psy8066 140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219 (529)
Q Consensus 140 ~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~ 219 (529)
+|+.+.|.|++++++++++.+|+++.+++.+|.|++++|+++|..+.+|++...++| ...+.+.+.+.+|++|||+++
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 160 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMY--DEVVFDHLHEITYKDQPLGRT 160 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSC
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999887776 678899999999999999999
Q ss_pred CCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccC
Q psy8066 220 KLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298 (529)
Q Consensus 220 ~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (529)
.+|+.++|++++.++|++||++||+|+||+++++| +++++++++++++|+.+|....... .+......+.+.+
T Consensus 161 ~~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~------~~~~~~~~~~~~~ 234 (443)
T 1hr6_B 161 ILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVP------LGSPRGPLPVFCR 234 (443)
T ss_dssp SSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCC------TTSCCSSCCCCCC
T ss_pred CcCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC------cccccCCCCCCCC
Confidence 99999999999999999999999999999999999 9999999999999999764321100 0000000112223
Q ss_pred CeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEE
Q psy8066 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFS 378 (529)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~ 378 (529)
....+.... .+++++.++|+++++++++.+++.|++.+||++. ...++|+|+.|+|+++||++.|++|+
T Consensus 235 ~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~ 303 (443)
T 1hr6_B 235 GERFIKENT---------LPTTHIAIALEGVSWSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANS 303 (443)
T ss_dssp EEEEEECTT---------CSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSE
T ss_pred CeEEeccCC---------ccceEEEEEEecCCCCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEE
Confidence 333332211 2578999999998888999999999999998632 12334667889999999999999999
Q ss_pred EeeeccccCccceEEEEEEeC--CCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q psy8066 379 ATAYNHAYADTGLFCIHASAP--PSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQV 455 (529)
Q Consensus 379 v~a~~~~~~~~g~~~i~~~~~--~~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~ 455 (529)
+++++..+.+.|.|.+++.++ |++++++++.+.++++++++ ++|++||+++|+.++.++....+++..++..++.++
T Consensus 304 ~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (443)
T 1hr6_B 304 YMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQV 383 (443)
T ss_dssp EEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred EEeeecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999888777889999999999 99999999999999999987 699999999999999999999999999998888776
Q ss_pred HhcCCCCChhHHHHHhccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHhh
Q psy8066 456 LATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 456 ~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~-~~~~~vvG~~~~~p~~~~~~~~~~ 513 (529)
+..+.....+++.+.|++||++||++++++|+.+ +.+++++|+.+.+|.+++|...+.
T Consensus 384 ~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 442 (443)
T 1hr6_B 384 VTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442 (443)
T ss_dssp HHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred HhcCCcCCHHHHHHHHHhCCHHHHHHHHHHHhccCCcEEEEECCcccCccHHHHHHHhc
Confidence 5556555578899999999999999999999986 678999999999999999987653
No 6
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=8.5e-58 Score=475.76 Aligned_cols=415 Identities=21% Similarity=0.250 Sum_probs=358.1
Q ss_pred CCCeEEEEcCCCCEEEEEec-CCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEE
Q psy8066 61 DRNTQVTTLPNGLRVASENR-FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139 (529)
Q Consensus 61 ~~~~~~~~L~NGl~v~~~~~-~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~ 139 (529)
.++++.++|+||++|++.+. ..+.+.+.+++++|++.|+.+..|++|++|||+|+||.+++. .++.+.++.+|+++|+
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~-~~l~~~l~~~g~~~na 82 (445)
T 3ami_A 4 AASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGP-GEFSKRVAAMGGRDNA 82 (445)
T ss_dssp GGGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCT-THHHHHHHHTTCEEEE
T ss_pred CcCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCH-HHHHHHHHHhCCcccc
Confidence 35789999999999998665 468999999999999999999999999999999999999865 7899999999999999
Q ss_pred eeccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-HhhcCCChHHHHHHHHHHhccCCCCCCC
Q psy8066 140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELE-NYQMRPEQETLLMDMIHAAAYKDNTLGL 218 (529)
Q Consensus 140 ~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~-~~~~~p~~~~~~~~~l~~~l~~~~~~~~ 218 (529)
+|+.+.|.|.+++++++++.+|+++.+++.+|.|++++|+++|..+.+|++ ...++| ...+.+.+.+.+|++|||++
T Consensus 83 ~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p--~~~~~~~~~~~~~~~~p~~~ 160 (445)
T 3ami_A 83 FTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKP--RSKAYEALMAASYVAHPYRV 160 (445)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCH--HHHHHHHHHHHHCSSSGGGS
T ss_pred ccCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCCh--HHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999 566666 67889999999999999999
Q ss_pred CCCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCccc
Q psy8066 219 PKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYT 297 (529)
Q Consensus 219 ~~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (529)
+.+|+.++|++++.++|++||++||+|+||+++|+| +++++++++++++|+.+|+...... .... . +...
T Consensus 161 ~~~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~------~~~~--~-~~~~ 231 (445)
T 3ami_A 161 PVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPAR------KQQG--E-PQQA 231 (445)
T ss_dssp CTTCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCC------CCCC--C-CCCC
T ss_pred CCCCCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC------CCCC--C-CCCC
Confidence 999999999999999999999999999999999999 9999999999999999765321100 0000 1 1111
Q ss_pred C-CeeEEecCCCCCCCCCCCCCceeEEEEecCCC---CC-CCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhh
Q psy8066 298 G-GIVKEECNIPTFAGTSGLPELSHVVIGLEGVS---HQ-DPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNR 372 (529)
Q Consensus 298 ~-~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~---~~-~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~ 372 (529)
+ ....+..+. .++++.++|+++. ++ +++++++.|++.|||++. +|||+++||++
T Consensus 232 ~~~~~~~~~~~----------~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~-----------~srL~~~lre~ 290 (445)
T 3ami_A 232 GVRRVTVKAPA----------ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYD-----------GARMTRQLVRG 290 (445)
T ss_dssp SCEEEEEEEEC----------SSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSST-----------TCHHHHHTTTT
T ss_pred CceEEEEecCC----------CccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCc-----------chHHHHHHhhc
Confidence 2 223333332 4688999999887 77 789999999999999753 39999999999
Q ss_pred cCceEEEeeeccc-cCc-cceEEEEEEeCCCC-HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhccChHHHH
Q psy8066 373 HHWMFSATAYNHA-YAD-TGLFCIHASAPPSN-VKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVF 448 (529)
Q Consensus 373 ~gl~Y~v~a~~~~-~~~-~g~~~i~~~~~~~~-~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~ 448 (529)
.|++|++++++.. ..+ .|.|.|++.+.|++ .+++++.+.++|+++++ +++++||+++|+.++.++....+++..++
T Consensus 291 ~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~ 370 (445)
T 3ami_A 291 NKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQA 370 (445)
T ss_dssp SCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred CCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 9999999998874 456 89999999999984 99999999999999986 89999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHhccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHH
Q psy8066 449 EDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDI 508 (529)
Q Consensus 449 ~~l~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~-~~~~~vvG~~~~~p~~~~~ 508 (529)
..++...+.++..+...++.+.|++||.+||++++++||.+ +..++++||.+..|..++=
T Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~~~~~~~~~ 431 (445)
T 3ami_A 371 TQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLPPDPKAQQN 431 (445)
T ss_dssp HHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEECC-------
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHHHHHHHcCcCCeEEEEEccCccCcccccc
Confidence 99988877555667788999999999999999999999987 5678999999888876653
No 7
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=2.8e-56 Score=463.35 Aligned_cols=418 Identities=27% Similarity=0.462 Sum_probs=373.8
Q ss_pred CCCeEEEEcCCCCEEEEEecCCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEEe
Q psy8066 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCL 140 (529)
Q Consensus 61 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~~ 140 (529)
.++++.++|+||++|++.+...+.+.+.+++++|+..|+++..|++|+++||+|.||.++ +..++.+.++.+|++++++
T Consensus 21 ~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~-~~~~~~~~l~~~G~~~na~ 99 (439)
T 1pp9_B 21 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA-SSFKITRGIEAVGGKLSVT 99 (439)
T ss_dssp CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSS-CHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcC-CHHHHHHHHHHhCCeEEEE
Confidence 456799999999999987666799999999999999999999999999999999999997 6789999999999999999
Q ss_pred eccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCCC
Q psy8066 141 SSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220 (529)
Q Consensus 141 t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~ 220 (529)
++.+.+.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++| ...+.+.+...+|+ ||++++.
T Consensus 100 t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p--~~~~~~~~~~~~~~-~~~~~~~ 176 (439)
T 1pp9_B 100 STRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNP--QAHVIENLHAAAYR-NALANSL 176 (439)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHBS-SGGGSCS
T ss_pred ecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHhc-CCCCCCc
Confidence 99999999999999999999999999999999999999999999999999877766 67889999999999 9999999
Q ss_pred CCCccccCCCCHHHHHHHHHhhccCCCeEEEEecCCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCCe
Q psy8066 221 LCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGI 300 (529)
Q Consensus 221 ~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (529)
+|+.++|++++.++|++||+++|+|+||+++++|-++++++++++++|+ +|..... +. ....+.++.
T Consensus 177 ~g~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~---------~~---~~~~~~~~~ 243 (439)
T 1pp9_B 177 YCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGL---------SG---AKAKYHGGE 243 (439)
T ss_dssp SCCGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-C---------CC---CCCCBCCEE
T ss_pred cCCHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCC---------CC---CCCCCcCCe
Confidence 9999999999999999999999999999999999888999999999998 7643110 00 011122333
Q ss_pred eEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEe
Q psy8066 301 VKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSAT 380 (529)
Q Consensus 301 ~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~ 380 (529)
..+..+ .+++++.++|+++++++++.+++.|++.|||+++.|++|+ ||.++||++||++.|++|+++
T Consensus 244 ~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~ 310 (439)
T 1pp9_B 244 IREQNG----------DSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVS 310 (439)
T ss_dssp EEEECC----------CSEEEEEEEEECCCTTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEE
T ss_pred EEecCC----------ccceEEEEEecCCCCCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEE
Confidence 333333 2568999999998888889999999999999988888776 788999999999999999999
Q ss_pred eeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcC
Q psy8066 381 AYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATG 459 (529)
Q Consensus 381 a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (529)
+++..+.+.|.|.+++.++|++++++++.+.++++++.+ ++|++||+++|+.++.++....+++..++..++...+..+
T Consensus 311 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (439)
T 1pp9_B 311 AFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAG 390 (439)
T ss_dssp EEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHS
T ss_pred EeeccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcC
Confidence 988777788999999999999999999999999999987 7999999999999999999999999999999988877667
Q ss_pred CCCChhHHHHHhccCCHHHHHHHHHHhccCCCeEEEEcCCCCCCCHHHH
Q psy8066 460 HRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDI 508 (529)
Q Consensus 460 ~~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~vvG~~~~~p~~~~~ 508 (529)
.....+++.+.|++||++||++++++++..+..++++|+.+.+|.+++|
T Consensus 391 ~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~v~g~~~~~~~~~~~ 439 (439)
T 1pp9_B 391 SYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 439 (439)
T ss_dssp SCCCHHHHHHHHHTCCHHHHHHHHHHHHHSCEEEEEEECGGGCCCGGGC
T ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEECCcccCCccccC
Confidence 6677899999999999999999999999867889999999999988763
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=2.5e-55 Score=455.49 Aligned_cols=412 Identities=15% Similarity=0.201 Sum_probs=360.6
Q ss_pred CCCCeEEEEcCCCCEEEEEecC-CCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeE
Q psy8066 60 NDRNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICD 138 (529)
Q Consensus 60 ~~~~~~~~~L~NGl~v~~~~~~-~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~ 138 (529)
..++++.++|+||++|++.+.+ .|.+.+.+++++|+..| ++..|++|+++||++.|+.++ +..++.+.++.+|++++
T Consensus 10 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~-~~~~l~~~l~~~g~~~~ 87 (434)
T 3gwb_A 10 RNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGK-DVGAIAQGFEGLGADFG 87 (434)
T ss_dssp --CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTE-EHHHHHHHHHTTTCEEE
T ss_pred cCCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccC-CHHHHHHHHHHhCCEEE
Confidence 3467899999999999987665 49999999999999999 889999999999999999997 67899999999999999
Q ss_pred EeeccceeEEEEEeCCCC--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCC
Q psy8066 139 CLSSRDTFIYAASAATSG--LDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTL 216 (529)
Q Consensus 139 ~~t~~~~~~~~~~~~~~~--l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~ 216 (529)
++++.+.+.|++++++++ ++.+|+++.+++.+|.|++++|+++|+.+.+++++..++| ...+.+.+...+|++|||
T Consensus 88 a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p--~~~~~~~~~~~~~~~~~~ 165 (434)
T 3gwb_A 88 NGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNP--GKLASLELMKRLYGTHPY 165 (434)
T ss_dssp EEECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTTSTT
T ss_pred eeecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCCCCC
Confidence 999999999999999988 9999999999999999999999999999999999887766 789999999999999999
Q ss_pred CCCCCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCc
Q psy8066 217 GLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSAT 295 (529)
Q Consensus 217 ~~~~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 295 (529)
+++..|+.++|++++.++|++||+++|+|+||+++++| ++++++.++++++|+.+|...... .+. .+..
T Consensus 166 ~~~~~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~---~~~~ 235 (434)
T 3gwb_A 166 AHASDGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALA-------KIE---QPAE 235 (434)
T ss_dssp SSCTTCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCC-------CCC---CCCC
T ss_pred CCCCCCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCC-------CCC---CCCC
Confidence 99999999999999999999999999999999999999 999999999999999976541110 011 1111
Q ss_pred ccCCeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCc
Q psy8066 296 YTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHW 375 (529)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl 375 (529)
..++...+..+. .++++.++|++++.++++++++.|++.|||++ |+.++||++||+++|+
T Consensus 236 ~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl 295 (434)
T 3gwb_A 236 PKASIGHIEFPS----------SQTSLMLAQLGIDRDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGL 295 (434)
T ss_dssp CCCEEEEEECCS----------SEEEEEEEEECCBTTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCC
T ss_pred CCCceEEEeCCC----------CceeEEecCcCCCCCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCC
Confidence 223333343332 57899999999888899999999999999964 2559999999999999
Q ss_pred eEEEeeeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Q psy8066 376 MFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQ 454 (529)
Q Consensus 376 ~Y~v~a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~ 454 (529)
+|++++++..+.+.|.|.++++++|++++++++.+.++++++++ +++++||+++|+.++.++....+++..++..++..
T Consensus 296 ~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 375 (434)
T 3gwb_A 296 TYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAM 375 (434)
T ss_dssp CSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHH
T ss_pred cceeeeecccCCCceeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 99999999888888999999999999999999999999999976 89999999999999999999999999999999887
Q ss_pred HHhcCCCCChhHHHHHhccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCH
Q psy8066 455 VLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSY 505 (529)
Q Consensus 455 ~~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~-~~~~~vvG~~~~~p~~ 505 (529)
...+...+..+++.+.|++||++||++++++||.+ +..++++||...-|-+
T Consensus 376 ~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~vvg~~~~~~~~ 427 (434)
T 3gwb_A 376 GFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTVAQKPL 427 (434)
T ss_dssp HHTTCCTTHHHHHHHHHHHCCHHHHHHHHHHHCCGGGCEEEEEECCCCCCC-
T ss_pred HHcCCCccHHHHHHHHHHhCCHHHHHHHHHHhcChhhEEEEEEcCccccCcc
Confidence 66544456678999999999999999999999986 6889999998754433
No 9
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=2.8e-54 Score=446.32 Aligned_cols=408 Identities=21% Similarity=0.274 Sum_probs=354.9
Q ss_pred CCeEEEEcCCCCEEEEEecC-CCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCC----CCCCHHHHHHHHHHhCCE
Q psy8066 62 RNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTS----EYVNKDAIAQSLEKIGGI 136 (529)
Q Consensus 62 ~~~~~~~L~NGl~v~~~~~~-~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~----~~~~~~~l~~~l~~~g~~ 136 (529)
++++.++|+||++|++.+.+ .+.+.+.+++++|+..|+++..|++|+++||+|.||. ++ +..++.+.++.+|++
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~-~~~~~~~~l~~~G~~ 80 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSAL-DENAIADRLADIGAR 80 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCE-EHHHHHHHHHHTTCE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCC-CHHHHHHHHHHhCCE
Confidence 45689999999999987654 5899999999999999999999999999999999999 87 677999999999999
Q ss_pred eEEeeccceeEEEEEeCCCCH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCC
Q psy8066 137 CDCLSSRDTFIYAASAATSGL--DTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDN 214 (529)
Q Consensus 137 ~~~~t~~~~~~~~~~~~~~~l--~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~ 214 (529)
++++|+.+.+.|+++++++++ +.+|+++.+++.+|.|++++|+++|+.+.+|++...++| ...+.+.+...+|++|
T Consensus 81 ~~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~ 158 (424)
T 3amj_B 81 LGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQP--GSILGRRFTELAYGKH 158 (424)
T ss_dssp EEEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHHTTS
T ss_pred EEeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHhcCCCC
Confidence 999999999999999999998 999999999999999999999999999999999877666 6889999999999999
Q ss_pred CCCCCCCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCC
Q psy8066 215 TLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSS 293 (529)
Q Consensus 215 ~~~~~~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 293 (529)
||+++. +.++|++++.++|++||++||+|+||+++++| +++++++++++++|+.+|...... + .. .+
T Consensus 159 p~~~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~--------~-~~-~~ 226 (424)
T 3amj_B 159 PYGHVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLP--------P-LP-DP 226 (424)
T ss_dssp GGGCCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCC--------C-CC-CC
T ss_pred CCCCCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCC--------C-CC-CC
Confidence 999876 79999999999999999999999999999999 999999999999999976431110 0 00 01
Q ss_pred CcccCCeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhc
Q psy8066 294 ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRH 373 (529)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~ 373 (529)
....+..+.+..+. .++++.++|++++.++++.+++.|++.|||++ |+.+|||++||++.
T Consensus 227 ~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~ 286 (424)
T 3amj_B 227 AMPRATVERIANPA----------TQAHIAIGMPTLKRGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKR 286 (424)
T ss_dssp CCCCCEEEEEECSS----------SEEEEEEEEEEEBTTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTT
T ss_pred CCCCCceEEeeCCC----------CccEEEeeccCCCCCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhC
Confidence 11123333333331 57899999998888889999999999999964 25599999999999
Q ss_pred CceEEEeeeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy8066 374 HWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVG 452 (529)
Q Consensus 374 gl~Y~v~a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~ 452 (529)
|++|++++++..+.+.|.|.++++++|++++++++.+.++++++++ +++++||+++|+.++.++....+++..++..++
T Consensus 287 gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~ 366 (424)
T 3amj_B 287 GLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVA 366 (424)
T ss_dssp CCEEEEEEEECCBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHH
T ss_pred CeEEEeeeeeccCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHH
Confidence 9999999998888888999999999999999999999999999986 899999999999999999999999999999888
Q ss_pred HHHHhcCCCCChhHHHHHhccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCC
Q psy8066 453 RQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPS 504 (529)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~-~~~~~vvG~~~~~p~ 504 (529)
...+.+...+..+++.+.|++||++||++++++++.+ +..++++||...+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~~ 419 (424)
T 3amj_B 367 VIGYYGLPLDYLDHYTERVQAVTVEQVREAFARHVKRENLITVVVGGKASLEH 419 (424)
T ss_dssp HHHHTTCCTTTTTSHHHHHHTCCHHHHHHHHHHHCCGGGCEEEEEECC-----
T ss_pred HHHHcCCChhHHHHHHHHHHcCCHHHHHHHHHHhcCccceEEEEECChhhhhh
Confidence 7665444446678899999999999999999999986 688999999876654
No 10
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=3.4e-54 Score=446.55 Aligned_cols=414 Identities=20% Similarity=0.318 Sum_probs=359.7
Q ss_pred EEEEcCCCCEEEEEecC-CCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEEeecc
Q psy8066 65 QVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSR 143 (529)
Q Consensus 65 ~~~~L~NGl~v~~~~~~-~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~~t~~ 143 (529)
+.++|+||++|++.+.+ .+.+.+.+++++|+..|++++.|++|+++||++.|+.+ ..++..|+++|++|+.
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--------~~~~~~G~~~na~t~~ 73 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--------AVAAKEGLALSSNISR 73 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--------HHHHHTTCEEEEEECS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--------ccHHHcCCeeeeeecC
Confidence 56799999999987664 58999999999999999999999999999999998643 2468899999999999
Q ss_pred ceeEEEEEeCCCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHhccCCCCCCCC
Q psy8066 144 DTFIYAASAATSGLDTVMKILGDVVLRPK---FSEEEINMARQTIQFELENYQMRP-EQETLLMDMIHAAAYKDNTLGLP 219 (529)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~ll~~~l~~p~---f~~~~~~~~k~~~~~el~~~~~~p-~~~~~~~~~l~~~l~~~~~~~~~ 219 (529)
+++.|++++++++++.+|+++.+++.+|. |++++|+++|+.+.+|++...++| . ..+.+.+.+.+|++||++++
T Consensus 74 ~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~ 151 (431)
T 3cx5_A 74 DFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHP--NRVLEHLHSTAFQNTPLSLP 151 (431)
T ss_dssp SCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHTTTSGGGSC
T ss_pred CeEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchh--HHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999999999999999 999999999999999999877666 4 67889999999999999999
Q ss_pred CCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccC
Q psy8066 220 KLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298 (529)
Q Consensus 220 ~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (529)
.+|+.++|++++.++|++||+++|+|+||+++++| +++++++++++++|+.+|..... ... .++...+
T Consensus 152 ~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~ 220 (431)
T 3cx5_A 152 TRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKP---------VLK--KKAAFLG 220 (431)
T ss_dssp TTCCHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCC---------CCC--CCCCCCC
T ss_pred CCCCHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCC---------CCC--CCCcccC
Confidence 99999999999999999999999999999999999 99999999999988886643110 000 1111223
Q ss_pred CeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCC-cccHHHHHHhhhcCceE
Q psy8066 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKG-MYTRLYTNVLNRHHWMF 377 (529)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g-~~srL~~~lR~~~gl~Y 377 (529)
..+.+.... .+++++.++|++++.++++.+++.|++.||+++ ++||||+| ++++||++||++ |++|
T Consensus 221 ~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe~-gl~y 287 (431)
T 3cx5_A 221 SEVRLRDDT---------LPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQEY-QLCD 287 (431)
T ss_dssp EEEEEECTT---------SSSEEEEEEEECCCTTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHTT-TCCS
T ss_pred ceEEEcCCC---------CCceEEEEEeecCCCCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHhc-Ccee
Confidence 333332221 256899999999888889999999999999964 34677775 779999999975 9999
Q ss_pred EEeeeccccCccceEEEEEEeCC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHH
Q psy8066 378 SATAYNHAYADTGLFCIHASAPP-SNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLM--NLEARPAVFEDVGRQ 454 (529)
Q Consensus 378 ~v~a~~~~~~~~g~~~i~~~~~~-~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~--~~~~~~~~~~~l~~~ 454 (529)
++++++..+.+.|.|.+++.++| ++++++++.+.++++++.+++|++||+++|+.++.++.. ..+++..++..++..
T Consensus 288 ~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (431)
T 3cx5_A 288 NFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAE 367 (431)
T ss_dssp EEEEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred eEeEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHH
Confidence 99998877778899999999999 999999999999999986689999999999999999999 899999999998887
Q ss_pred HHhcCCCCChhHHHHHhccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHh
Q psy8066 455 VLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGI 512 (529)
Q Consensus 455 ~~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~-~~~~~vvG~~~~~p~~~~~~~~~ 512 (529)
++..+.....+++.+.|++||++||++++++++.+ +..++++|+.+.+|.+++|.+..
T Consensus 368 ~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~ 426 (431)
T 3cx5_A 368 VLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDM 426 (431)
T ss_dssp HHHHSSCCCHHHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTT
T ss_pred HHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHH
Confidence 65556555678999999999999999999999975 67899999999999999998764
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=4.2e-50 Score=414.90 Aligned_cols=395 Identities=17% Similarity=0.198 Sum_probs=340.2
Q ss_pred EEcCCCCEEEEEecC-CCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHh-CCEeEEeeccc
Q psy8066 67 TTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKI-GGICDCLSSRD 144 (529)
Q Consensus 67 ~~L~NGl~v~~~~~~-~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~-g~~~~~~t~~~ 144 (529)
++|+||++|++.+.+ .+.+.+.+.+++|+..|+ .|++|+++||++.||.++++..++.+.++.+ |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 899999999987764 599999999999997764 6999999999999999998888999999998 99999999998
Q ss_pred e----eEEEEEeCCC-------CHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q psy8066 145 T----FIYAASAATS-------GLDTVMKILGDVVLRPK-----FSEEEINMARQTIQFELENYQMRPEQETLLMDMIHA 208 (529)
Q Consensus 145 ~----~~~~~~~~~~-------~l~~~l~ll~~~l~~p~-----f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~ 208 (529)
. +.|+++++++ +++.+|+++.+++.+|. |++++|+++|+.+.+++++..++| ...+.+.+..
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p--~~~~~~~~~~ 160 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDK--QTYASLALQS 160 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSH--HHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCH--HHHHHHHHHH
Confidence 8 5899999886 69999999999999999 999999999999999999877766 6789999999
Q ss_pred hcc-CCCCCCCCCCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCC
Q psy8066 209 AAY-KDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDK 286 (529)
Q Consensus 209 ~l~-~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~ 286 (529)
.+| ++||++++..|+.++|++++.++|++||+++|.|+||+++++| ++++++++++ ++|+ +|....... .
T Consensus 161 ~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~------~ 232 (425)
T 3d3y_A 161 VYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKA------A 232 (425)
T ss_dssp HHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCC------C
T ss_pred HhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccc------c
Confidence 999 8899999999999999999999999999999999999999999 9999999999 9999 875421100 0
Q ss_pred CCCCCCCCcccCC-eeEEecCCCCCCCCCCCCCceeEEEEecCC-CCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccH
Q psy8066 287 PVIDTSSATYTGG-IVKEECNIPTFAGTSGLPELSHVVIGLEGV-SHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTR 364 (529)
Q Consensus 287 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~-~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~sr 364 (529)
.... .+..... ......+ .+++++.++|+++ ++++++.+++.|++.||||+. .++
T Consensus 233 ~~~~--~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~-----------~s~ 289 (425)
T 3d3y_A 233 IFYN--QPIRNVIEERTEREV----------LAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFP-----------HSK 289 (425)
T ss_dssp SCCC--CCCCSSCEEEEEEEE----------CSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTST-----------TSH
T ss_pred cccc--ccCCCcceeEEecCC----------ccccEEEEEeecCCCCCCchHHHHHHHHHHhCCCh-----------hhH
Confidence 0000 0111111 2222222 2579999999975 688899999999999999753 399
Q ss_pred HHHHHhhhcCceEEEeeeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhccC
Q psy8066 365 LYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEA 443 (529)
Q Consensus 365 L~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~ 443 (529)
||++||+++|++|++++++... .|.|.|++.++|++++++++.+.++++++++ +++++||+++|+.++.++....++
T Consensus 290 L~~~lRe~~glaY~v~~~~~~~--~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~ 367 (425)
T 3d3y_A 290 LFMNVREKEHLAYYASSSIDTF--RGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDN 367 (425)
T ss_dssp HHHHTTTTSCCCSEEEEEEETT--TTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCeEEEEecccccc--CceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccC
Confidence 9999999999999999887643 7899999999999999999999999999987 799999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHhccCCHHHHHHHHHHhccCCCeEEEEcCCC
Q psy8066 444 RPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELI 500 (529)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~vvG~~~ 500 (529)
+..++..++...+.++.....+++.+.|++||++||++++++++. +..++++|+.+
T Consensus 368 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~~-~~~~~v~g~~~ 423 (425)
T 3d3y_A 368 AGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLEL-QAIFFLEGETE 423 (425)
T ss_dssp HHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHCEE-EEEEEEEEECC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhccC-ceEEEEeCCCC
Confidence 999999988877653555568899999999999999999999864 46678887654
No 12
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=3.5e-50 Score=422.35 Aligned_cols=410 Identities=13% Similarity=0.121 Sum_probs=331.5
Q ss_pred CCCeEEEEcCCCCEEEEEec---CCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHH----Hh
Q psy8066 61 DRNTQVTTLPNGLRVASENR---FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLE----KI 133 (529)
Q Consensus 61 ~~~~~~~~L~NGl~v~~~~~---~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~----~~ 133 (529)
++.++.++|+||++|++.++ ..+.+++.+++++|+++|++++.|++||+|||+|+||.++ +..++.+.++ .+
T Consensus 23 dp~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~-~~~~~~~~~~~~~~~~ 101 (492)
T 3go9_A 23 DPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASF-TPAQLQSLWQQGIDNE 101 (492)
T ss_dssp CTTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTC-CHHHHHHHHHTCSCSS
T ss_pred CCCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhc
Confidence 45679999999999997543 2478999999999999999999999999999999999998 4568887665 46
Q ss_pred CCEeEEeeccceeEEEEEeCC---CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhc
Q psy8066 134 GGICDCLSSRDTFIYAASAAT---SGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAA 210 (529)
Q Consensus 134 g~~~~~~t~~~~~~~~~~~~~---~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l 210 (529)
|+.+|++|+.|.|.|++++++ ++++.+|++|.|++.+|.|++++|+++|..+.++++...++|. ...+ ...+
T Consensus 102 G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~--~~~~---~~~~ 176 (492)
T 3go9_A 102 RPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQ--EPWW---RYRL 176 (492)
T ss_dssp SCCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTT--CHHH---HHHT
T ss_pred CCCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchh--hHHH---HHHh
Confidence 899999999999999999998 5799999999999999999999999999987777766655553 2222 2445
Q ss_pred cCCCCCCCCCCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCC
Q psy8066 211 YKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVI 289 (529)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 289 (529)
++.++++++.. .++|++++.++|++||++||+|+||+++|+| +++++++++++++|+.+|....... ..+.
T Consensus 177 ~~~~~~~~~~~--~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~-----~~~~- 248 (492)
T 3go9_A 177 KGSSLIGHDPG--QPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPA-----AVAT- 248 (492)
T ss_dssp TTSTTTTCCTT--CCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCC-----CCCC-
T ss_pred ccCCcccCCCc--hhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCC-----CCCC-
Confidence 66667776654 3689999999999999999999999999999 9999999999999999764311100 0111
Q ss_pred CCCCCcccCCeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHH------HHHHHhhcCCCCCCCCCCCCCccc
Q psy8066 290 DTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPA------CVLNILMGGGGSFSAGGPGKGMYT 363 (529)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~------~vl~~iLg~~~~f~~~~~~~g~~s 363 (529)
..+...+....+..+. .|+++.++|.++...++|..++ .|++.+|+ +
T Consensus 249 --~~~~~~~~~~~~~~~~----------~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg---------------~ 301 (492)
T 3go9_A 249 --LAPLPPEPVSLMNEQA----------AQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALF---------------W 301 (492)
T ss_dssp --CCCCCSSCEEEEESSC----------SSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHH---------------H
T ss_pred --CCCCCCCceEEEcCCC----------CCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHH---------------H
Confidence 1111122222333332 5789999999988777776655 79999999 7
Q ss_pred HHHHHHhh--hcCceEEEeeeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHh
Q psy8066 364 RLYTNVLN--RHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMN 440 (529)
Q Consensus 364 rL~~~lR~--~~gl~Y~v~a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~ 440 (529)
+|+.+||+ +.|++|++++++...++.+.| ++++++++.+++++.+.++++++++ ++|++||+++|+.+++++...
T Consensus 302 ~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~--~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~ 379 (492)
T 3go9_A 302 HIKQVLEKNNQKNLKLGFDCRVQYQRAQCAI--HLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKL 379 (492)
T ss_dssp HHHHHHHHSCCTTCEEEEEEEEETTEEEEEE--EEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhhccccccccCchhhhhhcceEE--EEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 899999999988766555554 4455899999999999999999986 899999999999999998776
Q ss_pred cc-----ChHHHHHHHHHHHHhcCCCCChhHH----HHHhccCCHHHHHHHHHHhccCCCeEEEEcCCCCCC-CHHHHHH
Q psy8066 441 LE-----ARPAVFEDVGRQVLATGHRKRPSTY----IESIENVTEDDIRRVASRLLTSQPSVAARGELINFP-SYEDIHS 510 (529)
Q Consensus 441 ~~-----~~~~~~~~l~~~~~~~~~~~~~~~~----~~~i~~vT~edi~~~a~~~l~~~~~~~vvG~~~~~p-~~~~~~~ 510 (529)
.+ ++..+++.+++.+........++++ .+.|++||++||++++++++.++..++++|+...+. ..+.|+.
T Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~ 459 (492)
T 3go9_A 380 FATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQE 459 (492)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHH
Confidence 54 4566777777766655544555553 366999999999999999999889999999888877 5888888
Q ss_pred Hhh
Q psy8066 511 GIQ 513 (529)
Q Consensus 511 ~~~ 513 (529)
.|.
T Consensus 460 ~~~ 462 (492)
T 3go9_A 460 IYN 462 (492)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 13
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.4e-50 Score=457.14 Aligned_cols=412 Identities=12% Similarity=0.112 Sum_probs=345.1
Q ss_pred CCCCCeEEEEcCCCCEEEEEec-CCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEe
Q psy8066 59 DNDRNTQVTTLPNGLRVASENR-FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGIC 137 (529)
Q Consensus 59 ~~~~~~~~~~L~NGl~v~~~~~-~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~ 137 (529)
.+...++.++|+|||+|++.+. ..+.+.+.+++++|+.+|+.+..|+|||+|||+|+||.+|+...++.++++.+|+++
T Consensus 16 ~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~ 95 (939)
T 1q2l_A 16 KDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSH 95 (939)
T ss_dssp TCCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEE
T ss_pred CCCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcc
Confidence 5566789999999999998665 468899999999999999999999999999999999999987779999999999999
Q ss_pred EEeeccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCC
Q psy8066 138 DCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLG 217 (529)
Q Consensus 138 ~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~ 217 (529)
|++|+.|+|+|++++++++++.+|++|+|++.+|.|++++++++|..+.+|++...++| ..++.+.+...+|++|||+
T Consensus 96 NA~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~--~~~~~~~~~~~~~~~~p~~ 173 (939)
T 1q2l_A 96 NASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRD--GMRMAQVSAETINPAHPGS 173 (939)
T ss_dssp EEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHSSCTTSGGG
T ss_pred eEEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999887766 5788999999999999999
Q ss_pred CCCCCCccccCC----CCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCC
Q psy8066 218 LPKLCPPASIGV----INNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTS 292 (529)
Q Consensus 218 ~~~~g~~~~l~~----it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 292 (529)
++.+|+.++|++ ++.++|++||++||+|+||+++|+| +++++++++++++|+.+|+...... ....+..
T Consensus 174 ~~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~------~~~~~~~ 247 (939)
T 1q2l_A 174 KFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKP------EITVPVV 247 (939)
T ss_dssp SCCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCC------CCCSCSC
T ss_pred cCCCCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCC------CCCCCCC
Confidence 999999999999 9999999999999999999999999 9999999999999999765321110 0111100
Q ss_pred CCcccCCeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCC-CcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhh
Q psy8066 293 SATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDP-DFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLN 371 (529)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~-~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~ 371 (529)
.....+..+..... .+++.+.++|+.|...+. +..++.+++.+||++++ ++|++.||+
T Consensus 248 ~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~ 306 (939)
T 1q2l_A 248 TDAQKGIIIHYVPA----------LPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK 306 (939)
T ss_dssp CGGGSSEEEEECCS----------SCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH
T ss_pred CHHHcCEEEEEEeC----------CCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH
Confidence 01111122222222 256899999998876554 67789999999997644 899999996
Q ss_pred hcCceEEEeeec--cccCccceEEEEEEeCC---CCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhc-cCh
Q psy8066 372 RHHWMFSATAYN--HAYADTGLFCIHASAPP---SNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNL-EAR 444 (529)
Q Consensus 372 ~~gl~Y~v~a~~--~~~~~~g~~~i~~~~~~---~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~-~~~ 444 (529)
.||+|+++++. ..+.+.|.|.|++.+.+ ++++++++.+.++|+++++ |++++||+++|+.+..++.... +++
T Consensus 307 -~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~ 385 (939)
T 1q2l_A 307 -QGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRD 385 (939)
T ss_dssp -TTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCS
T ss_pred -cCCchheeeccccccCCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCCh
Confidence 69999999874 34466899999999887 4899999999999999986 8999999999999999998776 566
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHhccCCHHHHHHHHHHhccCCCeEEEEcCCCC
Q psy8066 445 PAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELIN 501 (529)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~vvG~~~~ 501 (529)
...++.++..+. ....+........++++|+++|+++++++...+.+++++|+...
T Consensus 386 ~~~~~~l~~~~~-~~~~~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~~~ 441 (939)
T 1q2l_A 386 MDYVEWLADTMI-RVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEP 441 (939)
T ss_dssp HHHHHHHHHHHT-TSCGGGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEECTTCC
T ss_pred HHHHHHHHHHhh-cCCHHHHhcCchhhhccCHHHHHHHHHhcCHHHcEEEEEcCCCC
Confidence 677787877654 32222333445679999999999999985445788999998764
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=5.3e-47 Score=431.91 Aligned_cols=412 Identities=16% Similarity=0.160 Sum_probs=336.7
Q ss_pred cCCCCCeEEEEcCCCCEEEEEec-CCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCE
Q psy8066 58 KDNDRNTQVTTLPNGLRVASENR-FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGI 136 (529)
Q Consensus 58 ~~~~~~~~~~~L~NGl~v~~~~~-~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~ 136 (529)
..+++.++.++|+||++|++.+. ..+++.+.++|++|++.||.+..|+|||+|||+|+||.+|+..+++.++++.+|+.
T Consensus 29 ~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~ 108 (990)
T 3cww_A 29 PEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGS 108 (990)
T ss_dssp TTCCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCE
T ss_pred CCCCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCc
Confidence 36778899999999999998655 46899999999999999999999999999999999999998777999999999999
Q ss_pred eEEeeccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCC
Q psy8066 137 CDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTL 216 (529)
Q Consensus 137 ~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~ 216 (529)
+|++|+.|.|+|.+++++++++.+|+++++++.+|.|++++|+++|..|.+|++...++| ...+.+.+...+|++|||
T Consensus 109 ~NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~--~~~~~~~~~~~~~~~~py 186 (990)
T 3cww_A 109 SNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMND--AWRLFQLEKATGNPKHPF 186 (990)
T ss_dssp EEEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHTSCTTSGG
T ss_pred eeEEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999877765 567888899999999999
Q ss_pred CCCCCCCccccCCC-------CHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCC
Q psy8066 217 GLPKLCPPASIGVI-------NNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPV 288 (529)
Q Consensus 217 ~~~~~g~~~~l~~i-------t~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 288 (529)
+++.+|+.++|.++ +.++|++||++||+|+||+++++| +++++++++++++|+.+|+...... ...
T Consensus 187 ~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~------~~~ 260 (990)
T 3cww_A 187 SKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLP------EFP 260 (990)
T ss_dssp GCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCC------CCC
T ss_pred ccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCC------CCC
Confidence 99999999999999 999999999999999999999999 9999999999999999775421100 000
Q ss_pred CCCCCCcccCCeeEEecCCCCCCCCCCCCCceeEEEEecCCCCC-CCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHH
Q psy8066 289 IDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQ-DPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYT 367 (529)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~ 367 (529)
..+......+..+..... .+++.+.++|+.++.. ..+..++.+++.|||+++. +.|+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~-----------~sl~~ 319 (990)
T 3cww_A 261 EHPFQEEHLKQLYKIVPI----------KDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP-----------GSLLS 319 (990)
T ss_dssp SCSSCGGGSSEEEEECCS----------SSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCST-----------TCHHH
T ss_pred CCCCChHHcCeEEEEEEC----------CCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCC-----------CcHHH
Confidence 000001111122222211 2568999999988765 3578899999999986321 33677
Q ss_pred HHhhhcCceEEEeeeccc-cCccceEEEEEEeCC---CCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHh-c
Q psy8066 368 NVLNRHHWMFSATAYNHA-YADTGLFCIHASAPP---SNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMN-L 441 (529)
Q Consensus 368 ~lR~~~gl~Y~v~a~~~~-~~~~g~~~i~~~~~~---~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~-~ 441 (529)
.||+ .||+|++++++.. ..+.|.|.|++.+.+ ++++++++.+.++|+++++ |++++++++++......+... .
T Consensus 320 ~Lr~-~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~ 398 (990)
T 3cww_A 320 ELKS-KGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDK 398 (990)
T ss_dssp HHHH-TTSCSCEEEEEEEEETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHH-CCCcceeeeccccCCCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCc
Confidence 9997 5999999988764 455789999999765 3899999999999999986 899999999998888887764 3
Q ss_pred cChHHHHHHHHHHHHhcCCCCChhHHHHHhccCCHHHHHHHHHHhccCCCeEEEEcCCC
Q psy8066 442 EARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELI 500 (529)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~vvG~~~ 500 (529)
+++..++..++..+ ............+.|.++|++||+++++++...+.+++++|+..
T Consensus 399 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~~ 456 (990)
T 3cww_A 399 ERPRGYTSKIAGIL-HYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSF 456 (990)
T ss_dssp CCHHHHHHHHHHHT-TTSCGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGGG
T ss_pred CCHHHHHHHHHHHH-hhCCHHHHhccchhhhcCCHHHHHHHHHhcCHhHEEEEEEcCCC
Confidence 56666676665543 22222222233477999999999999997655578888888643
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.2e-45 Score=420.55 Aligned_cols=407 Identities=14% Similarity=0.147 Sum_probs=326.7
Q ss_pred CCCCeEEEEcCCCCEEEEEecCCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHH-hCCEeE
Q psy8066 60 NDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK-IGGICD 138 (529)
Q Consensus 60 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~-~g~~~~ 138 (529)
+...++..+|+||++|++.+.+.... ++.+|++.|+.+..|+||++|||+|+||.+|+..+.+.+.++. .|+.+|
T Consensus 34 ~~~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~N 109 (995)
T 2fge_A 34 KSKAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLN 109 (995)
T ss_dssp TEEEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEEC
T ss_pred cceEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCce
Confidence 34556778999999999877655333 3678999999999999999999999999999876556676765 588899
Q ss_pred EeeccceeEEEEEeC-CCCHHHHHHHHHHhhcCCCC--CHHHHHHH---------------HHHHHHHHHHhhcCCChHH
Q psy8066 139 CLSSRDTFIYAASAA-TSGLDTVMKILGDVVLRPKF--SEEEINMA---------------RQTIQFELENYQMRPEQET 200 (529)
Q Consensus 139 ~~t~~~~~~~~~~~~-~~~l~~~l~ll~~~l~~p~f--~~~~~~~~---------------k~~~~~el~~~~~~p~~~~ 200 (529)
++|+.|+|+|.+.+. .++++.+|++++|++.+|.| +++.|+++ |..+.+|++...++| ..
T Consensus 110 A~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p--~~ 187 (995)
T 2fge_A 110 AFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQP--DN 187 (995)
T ss_dssp CEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSH--HH
T ss_pred eeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCH--HH
Confidence 999999999999886 46899999999999999999 99999999 899999999887766 68
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhccCC--Ccccc
Q psy8066 201 LLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQ--PVWIQ 277 (529)
Q Consensus 201 ~~~~~l~~~l~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~~l~--~~~~~ 277 (529)
++.+.+.+.+|++|||+++.+|++++|++++.++|++||++||+|+||+++++| +++++++++++++|+.+| +....
T Consensus 188 ~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~ 267 (995)
T 2fge_A 188 ILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNS 267 (995)
T ss_dssp HHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCC
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999976 32110
Q ss_pred ccccccCCCCCCCCCCCcccCC---eeEEec--CCCCCCCCCCCCCceeEEEEecCCCCC--CCCcHHHHHHHHhhcCCC
Q psy8066 278 DKSLVLTDKPVIDTSSATYTGG---IVKEEC--NIPTFAGTSGLPELSHVVIGLEGVSHQ--DPDFVPACVLNILMGGGG 350 (529)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~g~~~~~~~~~v~~~~~~~~~~--~~~~~~~~vl~~iLg~~~ 350 (529)
.. .+.. +.+... ...+.. +.+ ..+++++.++|+++... +++..++.+|+.+|+++.
T Consensus 268 ~~------~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~ 330 (995)
T 2fge_A 268 SK------IKFQ----KLFSEPVRLVEKYPAGRDGD-------LKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTP 330 (995)
T ss_dssp SC------CCCC----CCCSSCEEEEEEEECCSSSC-------GGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSST
T ss_pred cc------cCCC----CCCCCCceEEEecccCCCCC-------ccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 00 0000 011111 111111 000 12579999999988866 478999999999998653
Q ss_pred CCCCCCCCCCcccHHHHHHhhhcCceEEEeee-ccccCccceEEEEE-EeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHH
Q psy8066 351 SFSAGGPGKGMYTRLYTNVLNRHHWMFSATAY-NHAYADTGLFCIHA-SAPPSNVKNIVDVLVKELVTMAG-PIDADELS 427 (529)
Q Consensus 351 ~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~-~~~~~~~g~~~i~~-~~~~~~~~~~i~~i~~~l~~l~~-~it~~el~ 427 (529)
+ |+|++.||++ ||+|+++++ +....+.+.|.|.+ .+++++++++++.+.++|+++++ |++++||+
T Consensus 331 ~-----------S~L~~~l~e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~ 398 (995)
T 2fge_A 331 A-----------SPLRKILLES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVE 398 (995)
T ss_dssp T-----------SHHHHHHHHT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred C-----------CHHHHHHHhc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3 9999999986 999999876 65556688999864 58999999999999999999986 89999999
Q ss_pred HHHHHHHHHHHHhc--cChH--HHHHHHHHHHHhcCCCCChhHHHHHhccCCH----H----HHHHHHHHhccCC--CeE
Q psy8066 428 RAKKQLQSMLLMNL--EARP--AVFEDVGRQVLATGHRKRPSTYIESIENVTE----D----DIRRVASRLLTSQ--PSV 493 (529)
Q Consensus 428 ~ak~~l~~~~~~~~--~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~i~~vT~----e----di~~~a~~~l~~~--~~~ 493 (529)
++|+.+..++.... +++. ..+..++..++.++.+....++.+.|++++. + +|++++++||.++ ..+
T Consensus 399 ~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 478 (995)
T 2fge_A 399 ASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVT 478 (995)
T ss_dssp HHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEE
Confidence 99999999987654 2344 3456666666655555555555566676666 8 8999999999653 456
Q ss_pred EEEcCCCC
Q psy8066 494 AARGELIN 501 (529)
Q Consensus 494 ~vvG~~~~ 501 (529)
+++++...
T Consensus 479 ~~~~p~~~ 486 (995)
T 2fge_A 479 IEMQPDPE 486 (995)
T ss_dssp EEEEEETT
T ss_pred EEEEcCcc
Confidence 77776543
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=2e-43 Score=398.44 Aligned_cols=402 Identities=12% Similarity=0.104 Sum_probs=315.0
Q ss_pred CCCCeEEEEcCCCCEEEEEecCCC-eeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHH--hCCE
Q psy8066 60 NDRNTQVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK--IGGI 136 (529)
Q Consensus 60 ~~~~~~~~~L~NGl~v~~~~~~~~-~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~--~g~~ 136 (529)
..+.++...|+||++|++.+++.+ .+. ..+.+|+..+|.+..|++|++|||+|+||.+|+. .++...+.. +|+.
T Consensus 83 ~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~-~e~~~~l~~~slG~~ 159 (1193)
T 3s5m_A 83 KMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNY-KNSIGLLEKGTLHTH 159 (1193)
T ss_dssp TEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCC-TTHHHHHHHSCCEEE
T ss_pred cccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCCh-hhHHHHHHHhccCce
Confidence 446678889999999998665543 222 3456677889999999999999999999999976 467777777 7899
Q ss_pred eEEeeccceeEEEEEeCC-CCHHHHHHHHHHhhcCCCCCHHH--HHHH-----------------------------HHH
Q psy8066 137 CDCLSSRDTFIYAASAAT-SGLDTVMKILGDVVLRPKFSEEE--INMA-----------------------------RQT 184 (529)
Q Consensus 137 ~~~~t~~~~~~~~~~~~~-~~l~~~l~ll~~~l~~p~f~~~~--~~~~-----------------------------k~~ 184 (529)
+|++|+.|+|+|.+++.+ ++++.+|++++|++.+|.|++++ |.++ |..
T Consensus 160 lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~v 239 (1193)
T 3s5m_A 160 LNAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGI 239 (1193)
T ss_dssp EEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECH
T ss_pred EEeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHH
Confidence 999999999999999887 89999999999999999999887 8776 568
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCCCCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHH
Q psy8066 185 IQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEA 263 (529)
Q Consensus 185 ~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~ 263 (529)
+.+|++...++| ...+.+.+.+.+|++|||+++.+|++++|.++|.++|++||++||+|+|++++++| +++++++++
T Consensus 240 V~~E~k~~~~~p--~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~ 317 (1193)
T 3s5m_A 240 VYNEMKGALSSP--LEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNF 317 (1193)
T ss_dssp HHHHHHHHTTCH--HHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHH
T ss_pred HHHHHHHhhCCH--HHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHH
Confidence 999999887776 68999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhccCCCccccccccccCCCCCCCCCCCcccCCeeEEecCCCCCCCCCCCCCceeEEEEecCCCC-----C------
Q psy8066 264 ANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSH-----Q------ 332 (529)
Q Consensus 264 ~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~-----~------ 332 (529)
++++|+.+|....... ....+...++...+..+.+..... +...|.++.++|+.++. +
T Consensus 318 v~~~f~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~------~~~~q~~l~~~~~~~~~~~~~~d~~~~~~ 386 (1193)
T 3s5m_A 318 VDQYLGQLDYSKYRDD-----AVESVEYQTYKKGPFYIKKKYGDH------SEEKENLVSVAWLLNPKVDKTNNHNNNHS 386 (1193)
T ss_dssp HHHHHTTCCGGGCCCC-----CCCCCCCCBCCCCCEEEEEEEECC------CSSCCEEEEEEEESSCBCC----------
T ss_pred HHHHhccCCCCCCCcc-----cccccCCCCCCCCCeEEEEecCCC------CCccccEEEEEEEecCccccccccccccc
Confidence 9999999764321100 001111111111122222211100 01257899999998642 2
Q ss_pred -----------------------CCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEe-eeccccCc
Q psy8066 333 -----------------------DPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSAT-AYNHAYAD 388 (529)
Q Consensus 333 -----------------------~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~-a~~~~~~~ 388 (529)
+++++++.||+.||+|+.+ ||||+.||+ .||+|+++ +++.....
T Consensus 387 ~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLggg~s-----------SrL~~~L~e-~gLa~~v~~~~~~~~~~ 454 (1193)
T 3s5m_A 387 NNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPE-----------SVLYKALTD-CGLGNNVIDRGLNDSLV 454 (1193)
T ss_dssp ------------CCCCSTTCCCSHHHHHHHHHHHHHHHSSTT-----------SHHHHHHHH-HCSCSEEEEEEEECSSS
T ss_pred ccccccccccccccccccccccCccHHHHHHHHHHHHCCCCC-----------CHHHHHHHh-cCCeeeecccccccccC
Confidence 3678999999999997644 999999998 59999998 67777777
Q ss_pred cceEEEEEE-eCCCC--------H-HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHh-ccChHH--HHHHHHHH
Q psy8066 389 TGLFCIHAS-APPSN--------V-KNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMN-LEARPA--VFEDVGRQ 454 (529)
Q Consensus 389 ~g~~~i~~~-~~~~~--------~-~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~-~~~~~~--~~~~l~~~ 454 (529)
.+.|.|++. +++++ + +++.+.|.++|+++.+ |++++||+++|+++..++... ..++.. .+..+...
T Consensus 455 ~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~ 534 (1193)
T 3s5m_A 455 QYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSK 534 (1193)
T ss_dssp SCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred CcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 889999875 66654 6 7999999999999986 899999999999999998774 344443 23455556
Q ss_pred HHhcCCCCC---hhHHHHHhccCC---HHHHHHHHHHhccC
Q psy8066 455 VLATGHRKR---PSTYIESIENVT---EDDIRRVASRLLTS 489 (529)
Q Consensus 455 ~~~~~~~~~---~~~~~~~i~~vT---~edi~~~a~~~l~~ 489 (529)
++..+++.. .++.++.+++.+ +.++++++++||..
T Consensus 535 w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~~yll~ 575 (1193)
T 3s5m_A 535 LNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFIN 575 (1193)
T ss_dssp HHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhcc
Confidence 666676654 344455555543 45999999999854
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=2.3e-42 Score=348.07 Aligned_cols=350 Identities=17% Similarity=0.235 Sum_probs=286.8
Q ss_pred CEEEEEecCCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEEeeccceeEEEEEe
Q psy8066 73 LRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASA 152 (529)
Q Consensus 73 l~v~~~~~~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~ 152 (529)
++|+..+...|.+++.+++++|+++| +..|++|+++||+|+||.++ +..++.+.++.+|+++|++|+.+++.|++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~-~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~ 77 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTR-SALKLVRESELLGGTFKSTLDREYITLKATF 77 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSS-CHHHHHHHHHHHTCEEEEEECSSCEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCC-CHHHHHHHHHHhCCeEEEEEccceEEEEEEe
Confidence 58888888889999999999999987 37899999999999999998 6789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHH-HHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCCCCCCccccCCCC
Q psy8066 153 ATSGLDTVMKILGDVVLRPKFSEEEIN-MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVIN 231 (529)
Q Consensus 153 ~~~~l~~~l~ll~~~l~~p~f~~~~~~-~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~l~~it 231 (529)
++++++.+|+++.+++.+|.|++++|+ ++|+.+.+|+++..++| ...+.+.+.+.+|+ |||+++.. .++|++++
T Consensus 78 ~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p--~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it 152 (352)
T 3cx5_B 78 LKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCP--VKSAEDQLYAITFR-KGLGNPLL--YDGVERVS 152 (352)
T ss_dssp EGGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCC
T ss_pred chhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhC-CCCCCccc--hhhhccCC
Confidence 999999999999999999999999998 99999999999887777 67899999999997 99998874 78999999
Q ss_pred HHHHHHHHHhhccCCCeEEEEecCCHHHHHHHH-HhhhccCCCccccccccccCCCCCCCCCCCcccCCeeEEecCCCCC
Q psy8066 232 NNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAA-NKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTF 310 (529)
Q Consensus 232 ~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~~~-~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (529)
.++|++||++||+|+||+++++|++++++++++ +++|+.+|...... +.. ....+.++...+..+
T Consensus 153 ~~~l~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~---- 218 (352)
T 3cx5_B 153 LQDIKDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLV--------SKS--EPKFFLGEENRVRFI---- 218 (352)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCC--------CCS--CCCCCCSCEEEEECS----
T ss_pred HHHHHHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCC--------CCC--CCCCccCCeEEEecC----
Confidence 999999999999999999999999999999999 89999976431110 000 111122333333221
Q ss_pred CCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEeeeccccCccc
Q psy8066 311 AGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTG 390 (529)
Q Consensus 311 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g 390 (529)
.++.+.+++ +.++++++++.|++.||| + +||++.|++ +++++..+.+.|
T Consensus 219 -------~~~~~~~~~---~~~~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g 267 (352)
T 3cx5_B 219 -------GDSVAAIGI---PVNKASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGG 267 (352)
T ss_dssp -------SSEEEEEEE---EECTTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEE
T ss_pred -------CCceEEEec---CCCChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcce
Confidence 345666654 345679999999999998 3 578888987 556655567789
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCCCChhHHHHH
Q psy8066 391 LFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIES 470 (529)
Q Consensus 391 ~~~i~~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 470 (529)
.|.++++++ +.+++.+.+.+++++ ++|++||+++|+.++.++....+++ +..... .
T Consensus 268 ~~~i~~~~~--~~~~~~~~i~~~l~~---~~t~~el~~ak~~~~~~~~~~~~~~--------------~~~~~~-----~ 323 (352)
T 3cx5_B 268 LFTLFVRDQ--DSAVVSSNIKKIVAD---LKKGKDLSPAINYTKLKNAVQNESV--------------SSPIEL-----N 323 (352)
T ss_dssp EEEEEEEES--CHHHHHHHHHHHHHH---HHSCEECGGGHHHHHHHHHHHCCST--------------TCCCCS-----C
T ss_pred eEEEEEEeC--CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhhhhcc--------------CCccce-----e
Confidence 999999986 556666666665543 4899999999999999999888763 222122 5
Q ss_pred hccCCHHHHHHHHHHhccCCCeEEEEcCCCCCCCHHHH
Q psy8066 471 IENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDI 508 (529)
Q Consensus 471 i~~vT~edi~~~a~~~l~~~~~~~vvG~~~~~p~~~~~ 508 (529)
|++||.+ + | .+++++++||.+.+|.+++|
T Consensus 324 i~~vt~~-------~-~-~~~~~~~~G~~~~~~~~~~~ 352 (352)
T 3cx5_B 324 FDAVKDF-------K-L-GKFNYVAVGDVSNLPYLDEL 352 (352)
T ss_dssp GGGCCEE-------C-C-CSCEEEEEESGGGSCCGGGC
T ss_pred eeeeeHh-------h-c-CCceEEEEccccccCccccC
Confidence 9999932 2 5 88999999999999988753
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=3.1e-36 Score=341.46 Aligned_cols=419 Identities=10% Similarity=0.043 Sum_probs=318.9
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCCCeEEEEcCCCCEEEEEecC---C-CeeEEEEEEecCCCCCCCCCCCHHHHHHH
Q psy8066 36 SFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRF---G-SFCTIGVIIDSGSRYEQPYPSGVSHFLEK 111 (529)
Q Consensus 36 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~L~NGl~v~~~~~~---~-~~~~~~l~v~~G~~~e~~~~~Gla~lle~ 111 (529)
.+.+|..++++|........ ......++.++|+||++||+.+++ . |++.+.+.+.+|...++.+..|+++++.+
T Consensus 474 ~~~~p~~n~~~~~~~~~~~~--~~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ 551 (939)
T 1q2l_A 474 ALSLPELNPYIPDDFSLIKS--EKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDY 551 (939)
T ss_dssp CCCCCCCCTTCCCCCCCCCC--SSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHH
T ss_pred cccCCCCCcCCCcCcccccC--cCCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHH
Confidence 45666677777765432211 122334578899999999997665 2 49999999999999888778899999999
Q ss_pred hhhcCCCCCCCHHHHHHHHHHhCCEeEEeeccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q psy8066 112 LAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELEN 191 (529)
Q Consensus 112 l~~~gt~~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~ 191 (529)
|+..|+..+ .+. .+..|.+++++. .+++.+.+++.+++++.+|+++.+.+.+|.|++++|+++|+.+++++++
T Consensus 552 ll~~g~~~~----~~~--~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~ 624 (939)
T 1q2l_A 552 LAGLALDQL----SNQ--ASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDS 624 (939)
T ss_dssp HHHHHHHHH----HHH--HHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hhH--HHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 998776543 233 333477788888 9999999999999999999999999999999999999999999999998
Q ss_pred hhc-CCChHHHHHHHHHHhccCCCCCCCCCCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHHHHhhhc
Q psy8066 192 YQM-RPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFV 269 (529)
Q Consensus 192 ~~~-~p~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~~~~~f~ 269 (529)
... +| ...+.+.+...+|++ + .+..++.+.|++++.++|++||+++|.+.+++++|+| ++.++++++++++++
T Consensus 625 ~~~~~p--~~~a~~~l~~~l~~~--~-~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~ 699 (939)
T 1q2l_A 625 AEKGKA--FEQAIMPAQMLSQVP--Y-FSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQK 699 (939)
T ss_dssp HSCSCH--HHHHHHHHHHTTSSS--C-CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred hhhcCh--HHHHHHHHHHHhcCC--C-CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHH
Confidence 744 34 677888899988875 2 4445789999999999999999999999999999999 999999999999999
Q ss_pred cCCCccccccccccCCCCCCCCCCCcccCCeeEEecCCCCCCCCCCCCCceeE-EEEecCCCCCCCCcHHHHHHHHhhcC
Q psy8066 270 DKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHV-VIGLEGVSHQDPDFVPACVLNILMGG 348 (529)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v-~~~~~~~~~~~~~~~~~~vl~~iLg~ 348 (529)
.++...... ..... .....+....+....+ ..++.+ .++|+.+..+.++.+.+.+|..++.
T Consensus 700 ~l~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~- 761 (939)
T 1q2l_A 700 QLGADGSEW-------CRNKD--VVVDKKQSVIFEKAGN--------STDSALAAVFVPTGYDEYTSSAYSSLLGQIVQ- 761 (939)
T ss_dssp HHTCCCSCC-------CCCEE--ECCCSCEEEEEEECCS--------SSCEEEEEEEECSSCCHHHHHHHHHHHHHHHH-
T ss_pred HHccCCccc-------cccce--EEeCCCceEEEecCCC--------CCCceeEEEEEecCCCCHHHHHHHHHHHHHHH-
Confidence 866421100 00000 0001122222222221 123445 6666654333233444555555544
Q ss_pred CCCCCCCCCCCCcccHHHHHHhhhcCceEEEeeecccc-Cccce-EEEEE-EeCCCCHHHHHHHHHHHHHHhcCCCCHHH
Q psy8066 349 GGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAY-ADTGL-FCIHA-SAPPSNVKNIVDVLVKELVTMAGPIDADE 425 (529)
Q Consensus 349 ~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~~~~~-~~~g~-~~i~~-~~~~~~~~~~i~~i~~~l~~l~~~it~~e 425 (529)
++||++||+++|++|+|+++.... ...|. |.|+. .++|++++++++.+.+++.++.+++|++|
T Consensus 762 --------------s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~e 827 (939)
T 1q2l_A 762 --------------PWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDE 827 (939)
T ss_dssp --------------HHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred --------------HHHHHHHHHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999987643 33453 56666 57899999999999999999877899999
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCC-CCChhHHHHHhccCCHHHHHHHHHHhccC-C-C--eEEEEcCCC
Q psy8066 426 LSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGH-RKRPSTYIESIENVTEDDIRRVASRLLTS-Q-P--SVAARGELI 500 (529)
Q Consensus 426 l~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~i~~vT~edi~~~a~~~l~~-~-~--~~~vvG~~~ 500 (529)
|+++|+.+++++....++....+..+|..++..+. .+..+++++.|++||++||++++++++.+ + . ++.++|+..
T Consensus 828 l~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~~~l~v~v~G~~~ 907 (939)
T 1q2l_A 828 FAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQN 907 (939)
T ss_dssp HHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTSCSSEEEEEEECCSSH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 99999999999999999998888888887775553 35678899999999999999999999764 3 3 345889874
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1e-33 Score=322.50 Aligned_cols=393 Identities=11% Similarity=0.014 Sum_probs=306.3
Q ss_pred EEcCCCCEEEEEecC-CCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhc-CCCCCCCHHHHHHHHHHhCCEeEE-----
Q psy8066 67 TTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFN-STSEYVNKDAIAQSLEKIGGICDC----- 139 (529)
Q Consensus 67 ~~L~NGl~v~~~~~~-~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~-gt~~~~~~~~l~~~l~~~g~~~~~----- 139 (529)
..+.||++|++.+.. .+.+.+.+++++|+. +++..|+++++.++++. ||.++ +..++.+.++.+.+.+++
T Consensus 556 ~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~-s~~el~~~l~~~~ggl~~~~~~~ 632 (995)
T 2fge_A 556 VGDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDL-TFVQLNQLIGRKTGGISVYPLTS 632 (995)
T ss_dssp EEESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSS-CHHHHHHHHHHHSSEEEEEEEEE
T ss_pred eeecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCC-CHHHHHHHHHHhcCceEeecccc
Confidence 445899999987765 489999999999886 56678999999888885 99997 688999999966555555
Q ss_pred eecc-----ceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCC
Q psy8066 140 LSSR-----DTFIYAASAATSGLDTVMKILGDVVLRPKFSEE-EINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKD 213 (529)
Q Consensus 140 ~t~~-----~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~-~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~ 213 (529)
+++. +.+.|++++.+++++.+|+++.+++.+|.|+++ +|+++++.+..++++...++. ...+...+...+++.
T Consensus 633 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~-~~~A~~~~~~~~~~~ 711 (995)
T 2fge_A 633 SVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSG-HGIAAARMDAMLNIA 711 (995)
T ss_dssp EETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHTTCHH
T ss_pred ccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccH-HHHHHHHHHHhCChh
Confidence 5544 889999999999999999999999999999999 999999999999997765432 456677776665545
Q ss_pred CCCCCCC-----CCCc--------cccCCCCHHHHHHHHHhhccCCCeEEEEec-CCH-HHHHHHHHhhhccC-CCcccc
Q psy8066 214 NTLGLPK-----LCPP--------ASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEH-EALVEAANKYFVDK-QPVWIQ 277 (529)
Q Consensus 214 ~~~~~~~-----~g~~--------~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~-~~l~~~~~~~f~~l-~~~~~~ 277 (529)
++++... .+.. +.++.+ .++|++||+++|.+++|+++++| ++. +++.++++++|+.+ |.....
T Consensus 712 ~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~ 790 (995)
T 2fge_A 712 GWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGG 790 (995)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSC
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCC
Confidence 5553221 1111 557889 99999999999999999999999 995 99999999999998 643110
Q ss_pred ccccccCCCCCCCCCCCcccCCeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCC
Q psy8066 278 DKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGP 357 (529)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~ 357 (529)
. .....+.. .... ....+ ....++..+++..+++++++.++.|++.|||+
T Consensus 791 -~-------~~~~~~~~--~~~~-~~~~~----------~~v~~~~~~~~~~~~~~~d~~al~vl~~iLg~--------- 840 (995)
T 2fge_A 791 -L-------VTWDGRLP--LRNE-AIVIP----------TQVNYVGKAGNIYSTGYELDGSAYVISKHISN--------- 840 (995)
T ss_dssp -S-------CCCCCCCC--CCCE-EEECS----------CSSBEEEEEEEGGGGTCCCCTHHHHHHHHHHH---------
T ss_pred -C-------CcccccCC--ccce-EEEec----------CceEEEEEecCCCCCCCcccHHHHHHHHHHCC---------
Confidence 0 00000000 0011 11111 12345555666667889999999999999985
Q ss_pred CCCcccHHHHHHhhhcCceEEEeeeccccCccceEE-EEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Q psy8066 358 GKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFC-IHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQS 435 (529)
Q Consensus 358 ~~g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~-i~~~~~~~~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~ 435 (529)
++||++||+ +|++|++++++.. .|.|. ++...+| +.+++++.+.+.++.+++ ++|++||+++|..+++
T Consensus 841 -----~~L~~~iRe-~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~ 910 (995)
T 2fge_A 841 -----TWLWDRVRV-SGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIG 910 (995)
T ss_dssp -----THHHHHTTT-TTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred -----CccHHHhhh-cCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 599999999 8999999998765 58888 8888888 688889999998888776 6999999999999999
Q ss_pred HHHHhccChHHHHHHHHHHHHhcCCCCChhHHHHHhccCCHHHHHHHHHHhccC--CCeEEEEcCCCCCCCH
Q psy8066 436 MLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS--QPSVAARGELINFPSY 505 (529)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~--~~~~~vvG~~~~~p~~ 505 (529)
++ ....++.......+...+.+...+..+++++.|.+||++||+++|++|+.+ +.+++|+|+.+.++..
T Consensus 911 ~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 911 DV-DSYQLPDAKGYSSLLRHLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HH-TCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
T ss_pred hc-cCCCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCHHHHHhh
Confidence 98 446677777766665555433345678889999999999999999999986 7999999987755443
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=7.3e-33 Score=315.45 Aligned_cols=428 Identities=10% Similarity=0.054 Sum_probs=325.8
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCeEEEEcCCCCEEEEEecC---CCeeEEEEEEecCCCCCCCCCCCHHHHHHHhh
Q psy8066 37 FQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRF---GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLA 113 (529)
Q Consensus 37 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~L~NGl~v~~~~~~---~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~ 113 (529)
+.+|..+.++|........+. .....+..++++||++||+.+.. .|...+.+.+..|...++++..++++++..++
T Consensus 493 ~~~p~~~~~ip~~~~~~~~~~-~~~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll 571 (990)
T 3cww_A 493 FKLPTKNEFIPTNFEILPLEA-AATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELL 571 (990)
T ss_dssp CCCCCCCTTCCCCCCCCCCCT-TCCSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCcccccccCCC-CCCCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 556667777776433221110 11223467889999999987654 57899999998888778887889999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHhCCEeEEeeccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q psy8066 114 FNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQ 193 (529)
Q Consensus 114 ~~gt~~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~ 193 (529)
..+ + +..++...+ .|.+++++++.+++.+++++.+++++.+|+++.+.+.+|.|++++|++.|+.+..++++..
T Consensus 572 ~~~---~-~~~~~~~~l--~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~ 645 (990)
T 3cww_A 572 KDS---L-NEYAYAAEL--AGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFR 645 (990)
T ss_dssp HHH---H-HHHHHHHHH--TTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHH---H-HHhhhHHHh--CCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 763 2 344565555 3788999999999999999999999999999999999999999999999999999999877
Q ss_pred c-CCChHHHHHHHHHHhccCCCCCCCCCCCCccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHHHHHHH---HHhhh
Q psy8066 194 M-RPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEA---ANKYF 268 (529)
Q Consensus 194 ~-~p~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~~---~~~~f 268 (529)
. +| ...+...+...+++ +++.. .++.+.|++++.++|++|++++|.+.+++++++| ++.+++.++ +.++|
T Consensus 646 ~~~p--~~~a~~~~~~~l~~-~~~~~--~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l 720 (990)
T 3cww_A 646 AEQP--HQHAMYYLRLLMTE-VAWTK--DELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL 720 (990)
T ss_dssp GSCH--HHHHHHHHHHHHBS-SCCCH--HHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred hcCh--HHHHHHHHHHHhCC-CCCCH--HHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 6 55 67888888888885 45542 3568999999999999999999999999999999 999999888 66788
Q ss_pred ccCCCccccccccccCCCCCCCCCCCcccCCeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcC
Q psy8066 269 VDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGG 348 (529)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~ 348 (529)
+.+|....... . ............+....+....+ ...++.+.+++..+..+.++.+++.||+.||+
T Consensus 721 ~~l~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il~- 787 (990)
T 3cww_A 721 IEHAHTKPLLP----S-QLAAYREVQLPDRGWFVYQQRNE-------VHNNSGIEIYYQTDMQSTSENMFLELFAQIIS- 787 (990)
T ss_dssp HHHHCCEECCG----G-GCCCCCBBCCCTTEEEEEEEECS-------SCSSEEEEEEEEEEECCHHHHHHHHHHHHHHH-
T ss_pred hccCCCCCCch----h-hccccceEEcCCCCeEEEEecCC-------CCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHH-
Confidence 76543200000 0 00000000001122211211110 12456777777765677788999999999998
Q ss_pred CCCCCCCCCCCCcccHHHHHHhhhcCceEEEeeeccccCccceEEE--EEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHH
Q psy8066 349 GGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCI--HASAPPSNVKNIVDVLVKELVTMAGPIDADEL 426 (529)
Q Consensus 349 ~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i--~~~~~~~~~~~~i~~i~~~l~~l~~~it~~el 426 (529)
++||++||+++|++|++++++....+...|.+ +..++|++++++++.+.+++..+.+++|++||
T Consensus 788 --------------~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~~~te~el 853 (990)
T 3cww_A 788 --------------EPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEEAF 853 (990)
T ss_dssp --------------HHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred --------------HHHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999998765533333333 44468889999999999999988668999999
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCC-CCChhHHHHHhccCCHHHHHHHHHHhccC------CCeEEEEcCC
Q psy8066 427 SRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGH-RKRPSTYIESIENVTEDDIRRVASRLLTS------QPSVAARGEL 499 (529)
Q Consensus 427 ~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~i~~vT~edi~~~a~~~l~~------~~~~~vvG~~ 499 (529)
+++|..+++++....+++......+|..++..+. .+..+++++.|+++|++||++++++++.+ +.+++++|+.
T Consensus 854 ~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~ 933 (990)
T 3cww_A 854 QKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLARE 933 (990)
T ss_dssp HHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCC
Confidence 9999999999999899998888888888775553 45668899999999999999999999874 3578999998
Q ss_pred CCCC
Q psy8066 500 INFP 503 (529)
Q Consensus 500 ~~~p 503 (529)
+...
T Consensus 934 ~~~~ 937 (990)
T 3cww_A 934 MDSN 937 (990)
T ss_dssp C---
T ss_pred Cccc
Confidence 7653
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.96 E-value=1.7e-29 Score=285.15 Aligned_cols=395 Identities=9% Similarity=0.032 Sum_probs=287.5
Q ss_pred CCCCEEEEEecC-CCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhc-CCCCCCCHHHHHHHHHHhCCEeEEeec-----
Q psy8066 70 PNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFN-STSEYVNKDAIAQSLEKIGGICDCLSS----- 142 (529)
Q Consensus 70 ~NGl~v~~~~~~-~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~-gt~~~~~~~~l~~~l~~~g~~~~~~t~----- 142 (529)
.||++|++.+.+ .+.+++.++++.|.. +.+..++..++..++.. ||.++ +..++.+.++.+++.++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l--~~e~l~yl~Lf~~~L~~lGT~~~-sy~el~~~i~~~tGGis~s~~~~~~~ 800 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHL--TVDELAYLNLFKTLILENKTNKR-SSEDFVILREKNIGSMSANVALYSKD 800 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTC--CHHHHTTHHHHHHHTTTCCBSSS-CHHHHHHHHHHHCSEEEEEEEEECCC
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCC--CHHHHhhHHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCceEEEeeeeccc
Confidence 589999986654 489999999999964 45667788888777744 99997 788999999999998887753
Q ss_pred -----------cceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhc
Q psy8066 143 -----------RDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEE-INMARQTIQFELENYQMRPEQETLLMDMIHAAA 210 (529)
Q Consensus 143 -----------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~-~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l 210 (529)
...+.++++++.++++++++++.+++.+|.|++.+ +++...+....+++...++. ...++..+...+
T Consensus 801 ~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sG-H~~A~~ra~s~~ 879 (1193)
T 3s5m_A 801 DHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKG-YAILMKYVKAHL 879 (1193)
T ss_dssp BTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHTTTTT
T ss_pred ccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHHHhc
Confidence 23468899999999999999999999999999864 66666666666665443332 345555544444
Q ss_pred cCCCCCCCCCCCCccccCCCC-------------HHHHHHHHHhhccCCCeEEEEec-CC-HHHHHHHHHhhhccCCCcc
Q psy8066 211 YKDNTLGLPKLCPPASIGVIN-------------NNTLFTYLKNYYTPTRMVVAGIG-VE-HEALVEAANKYFVDKQPVW 275 (529)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~~it-------------~~~l~~f~~~~~~~~~~~l~i~G-~~-~~~l~~~~~~~f~~l~~~~ 275 (529)
.+.+++.....| .+.+..++ .++|+++|+++|+++|+++.++| .+ .+++.+.++++++.++..+
T Consensus 880 s~~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~ 958 (1193)
T 3s5m_A 880 NSKHYAHNIIYG-YENYLKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYF 958 (1193)
T ss_dssp CHHHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHH
T ss_pred CcchhhhhhhCC-hHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhcc
Confidence 444444332222 22332222 67999999999999999999999 75 5787777777776654322
Q ss_pred ccccccc---cCC--CCCCC--------C-CC-CcccCCeeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHH
Q psy8066 276 IQDKSLV---LTD--KPVID--------T-SS-ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPAC 340 (529)
Q Consensus 276 ~~~~~~~---~~~--~~~~~--------~-~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 340 (529)
....... ... .+... . .. ......+. +..+ .++.++..+++.....++++.++.
T Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~p----------~~v~yv~~~~~~~~~~~~d~~al~ 1027 (1193)
T 3s5m_A 959 EENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEF-FVLP----------TFVNSVSMSGILFKPGEYLDPSFT 1027 (1193)
T ss_dssp HHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEE-EECC----------CSSBEEEEEEECSCTTCBCCTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccee-EecC----------CcceEEEEEecCCCCCCCchHHHH
Confidence 1110000 000 00000 0 00 00001111 1122 145788889988888899999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEeeeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC-
Q psy8066 341 VLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG- 419 (529)
Q Consensus 341 vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~- 419 (529)
|++.|||+ ++||++||++.| +|++++++. ..|.|.++...+| +..++++.+.++++.+.+
T Consensus 1028 Vl~~iLg~--------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp-~~~~tl~~~~~~~~~l~~~ 1088 (1193)
T 3s5m_A 1028 VIVAALKN--------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDP-NLEKTLATFRESAKGLRKM 1088 (1193)
T ss_dssp HHHHHHHH--------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBS-CSHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHCc--------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhh
Confidence 99999994 699999999866 999999976 5789998888887 478889999888888765
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCCCChhHHHHHhccCCHHHHHHHHHHhccC----CCeE
Q psy8066 420 --PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS----QPSV 493 (529)
Q Consensus 420 --~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~----~~~~ 493 (529)
++|++||+++|..+++++. ...++...+..++...+.+...++.+++.+.|.+||++||+++|++|+.+ +..+
T Consensus 1089 ~~~~teeEL~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~ 1167 (1193)
T 3s5m_A 1089 ADTMTENDLLRYIINTIGTID-KPRRGIELSKLSFLRLISNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNI 1167 (1193)
T ss_dssp HHHCCHHHHHHHHHHHHHHHS-CCCCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEE
T ss_pred cCCCCHHHHHHHHHHHHhccc-ccCChHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceE
Confidence 7999999999999999965 55676667776666555443345678999999999999999999999987 6899
Q ss_pred EEEcCCC
Q psy8066 494 AARGELI 500 (529)
Q Consensus 494 ~vvG~~~ 500 (529)
+|+|+.+
T Consensus 1168 vvvG~~~ 1174 (1193)
T 3s5m_A 1168 VIITTKE 1174 (1193)
T ss_dssp EEEECHH
T ss_pred EEEcCHH
Confidence 9999843
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.91 E-value=2.2e-23 Score=191.42 Aligned_cols=170 Identities=16% Similarity=0.198 Sum_probs=153.7
Q ss_pred CceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEeeeccccCccceEEEEEE
Q psy8066 318 ELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHAS 397 (529)
Q Consensus 318 ~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~~~ 397 (529)
+++++.++|++++.++++.+++.|++.||||+.+ |+||++||++ |++|++++++..+.+.|.|.|++.
T Consensus 23 ~~~~v~~~~~~~~~~~~d~~al~vl~~iLggg~s-----------SrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~~~ 90 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAGSPDFVGLDLAATILADTPS-----------SRLYHALVPT-KLASGVFGFTMDQLDPGLAMFGAQ 90 (197)
T ss_dssp CSCEEEEEEECCCTTSTTHHHHHHHHHHHHSSTT-----------SHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEEEE
T ss_pred CCceEEEEEecCCCCCCcHHHHHHHHHHHcCCCC-----------chHHHHHHhc-CceEEEEeccccccCCeEEEEEEE
Confidence 5689999999999989999999999999997543 9999999996 999999999888888999999999
Q ss_pred eCCC-CHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCCCChhHHHHHhccCC
Q psy8066 398 APPS-NVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVT 475 (529)
Q Consensus 398 ~~~~-~~~~~i~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vT 475 (529)
++|+ +.+++++.+.++|+++++ ++|++||+++|+.++.++....+++..++..++.+.+. |......++.+.|++||
T Consensus 91 ~~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~-g~~~~~~~~~~~i~~vT 169 (197)
T 3ih6_A 91 LQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIAS-GDWRLFFLQRDRVREAK 169 (197)
T ss_dssp CCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHT-TCTTHHHHHHHHHHTCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCC
Confidence 9999 699999999999999987 89999999999999999999999999999999888774 66667789999999999
Q ss_pred HHHHHHHHHHhccC-CCeEEEEcCCC
Q psy8066 476 EDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 476 ~edi~~~a~~~l~~-~~~~~vvG~~~ 500 (529)
.+||++++++||.+ +..++++||.+
T Consensus 170 ~~dv~~~a~~~l~~~~~~~~~~~P~~ 195 (197)
T 3ih6_A 170 LDDVQRAAVAYLVRSNRTEGRYIPTE 195 (197)
T ss_dssp HHHHHHHHHHHSSGGGCEEEEECC--
T ss_pred HHHHHHHHHHhCCccCeEEEEEeCCC
Confidence 99999999999986 56778888753
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.26 E-value=1.2e-05 Score=72.47 Aligned_cols=162 Identities=10% Similarity=0.029 Sum_probs=107.5
Q ss_pred CCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEEeec------cceeEEEEEeCC
Q psy8066 81 FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS------RDTFIYAASAAT 154 (529)
Q Consensus 81 ~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~~t~------~~~~~~~~~~~~ 154 (529)
+.+...+.+.+++....++ ..-...++..++..|.. + .|.+.|.+.|..+++++. ...+.+.+.+.+
T Consensus 21 ~~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLggg~s---S--rL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~ 93 (197)
T 3ih6_A 21 AGGTPLVAAMYHLPAAGSP--DFVGLDLAATILADTPS---S--RLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQP 93 (197)
T ss_dssp -CCSCEEEEEEECCCTTST--THHHHHHHHHHHHSSTT---S--HHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCT
T ss_pred CCCCceEEEEEecCCCCCC--cHHHHHHHHHHHcCCCC---c--hHHHHHHhcCceEEEEeccccccCCeEEEEEEEECC
Confidence 3456667777777665443 23344556666654322 2 566666555654443322 223555666666
Q ss_pred C-CHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCCCCCCccccCCC
Q psy8066 155 S-GLDTVMKILGDVVL---RPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVI 230 (529)
Q Consensus 155 ~-~l~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~l~~i 230 (529)
+ +++++++.+.+.+. .-.+++++|+++|..+...+....+++ ...+.......+++ .+.. .....+.|+++
T Consensus 94 ~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~--~~~a~~l~~~~~~g-~~~~--~~~~~~~i~~v 168 (197)
T 3ih6_A 94 GMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADP--EKVGVALSEAIASG-DWRL--FFLQRDRVREA 168 (197)
T ss_dssp TSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSH--HHHHHHHHHHHHTT-CTTH--HHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHcC-CHHH--HHHHHHHHHhC
Confidence 6 68888888876664 446999999999999998888666655 56666666666663 2211 12236788999
Q ss_pred CHHHHHHHHHhhccCCCeEEEEec
Q psy8066 231 NNNTLFTYLKNYYTPTRMVVAGIG 254 (529)
Q Consensus 231 t~~~l~~f~~~~~~~~~~~l~i~G 254 (529)
|.++++++.++|+.+++++++++|
T Consensus 169 T~~dv~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 169 KLDDVQRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp CHHHHHHHHHHHSSGGGCEEEEEC
T ss_pred CHHHHHHHHHHhCCccCeEEEEEe
Confidence 999999999999999999888877
No 24
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.09 E-value=0.00015 Score=73.54 Aligned_cols=170 Identities=13% Similarity=0.126 Sum_probs=111.4
Q ss_pred CceeEEEEecCCCCCC--CCcHHHHHHHHhhcCCCCCCCCCCCC-CcccHHHHHHhhhcCceEEEeeeccccCccceEEE
Q psy8066 318 ELSHVVIGLEGVSHQD--PDFVPACVLNILMGGGGSFSAGGPGK-GMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCI 394 (529)
Q Consensus 318 ~~~~v~~~~~~~~~~~--~~~~~~~vl~~iLg~~~~f~~~~~~~-g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i 394 (529)
+...+.+.+.+....+ .......++..++..|.. .. | .....-+....+..|..++++... -...+
T Consensus 24 ~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~---~~--~~~~~~~~~~~~l~~~G~~~~a~t~~------~~t~~ 92 (424)
T 3amj_B 24 PMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTG---SG--KSALDENAIADRLADIGARLGGGAEA------DRASF 92 (424)
T ss_dssp SEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEEC---ST--TSCEEHHHHHHHHHHTTCEEEEEECS------SCEEE
T ss_pred CEEEEEEEEecCCccCCCccchHHHHHHHHHHhccC---CC--ccCCCHHHHHHHHHHhCCEEEeecCC------CeEEE
Confidence 3577778887655433 244566778888753210 00 0 111222333445557766665432 13455
Q ss_pred EEEeCCCCH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCC-CChhHHHHHh
Q psy8066 395 HASAPPSNV--KNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR-KRPSTYIESI 471 (529)
Q Consensus 395 ~~~~~~~~~--~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~i 471 (529)
++.+.+++. +.+++.+.+.+... .+++++|++.|..++..+....+++...+.......+..+.+ ..+. ..+.|
T Consensus 93 ~~~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~-~~~~l 169 (424)
T 3amj_B 93 SLRVLSSPAERNSALTILRDILAHP--TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS-SVATL 169 (424)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC-CHHHH
T ss_pred EEEEeccccChhHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC-CHHHH
Confidence 666777776 88888777666432 499999999999999999888788877766655555543332 1112 56788
Q ss_pred ccCCHHHHHHHHHHhccC-CCeEEEEcCCCC
Q psy8066 472 ENVTEDDIRRVASRLLTS-QPSVAARGELIN 501 (529)
Q Consensus 472 ~~vT~edi~~~a~~~l~~-~~~~~vvG~~~~ 501 (529)
+++|.+|+++++++++.+ +..++++||...
T Consensus 170 ~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~ 200 (424)
T 3amj_B 170 QKISRDQLVSFHRTHYVARTAVVTLVGDITR 200 (424)
T ss_dssp HHCCHHHHHHHHHHHSCTTSCEEEEEESCCH
T ss_pred HhCCHHHHHHHHHHhcCCCceEEEEEeCCCH
Confidence 999999999999999986 688999999763
No 25
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.99 E-value=0.00035 Score=70.78 Aligned_cols=177 Identities=12% Similarity=0.104 Sum_probs=117.0
Q ss_pred ceeEEEEecCCCCCCC--CcHHHHHHHHhhcCCCCCCCCCCCCCcc-cHHHHHHhhhcCceEEEeeeccccCccceEEEE
Q psy8066 319 LSHVVIGLEGVSHQDP--DFVPACVLNILMGGGGSFSAGGPGKGMY-TRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 319 ~~~v~~~~~~~~~~~~--~~~~~~vl~~iLg~~~~f~~~~~~~g~~-srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~ 395 (529)
...+.+.+......++ ..-...++..++..|+. ... ..+.+.+ +..|..++++.... ...++
T Consensus 23 ~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~--------~~~~~~~~~~l-~~~G~~~na~t~~d------~t~~~ 87 (421)
T 3hdi_A 23 SVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTN--------TRSAQEIAEFF-DSIGGQVNAFTSKE------YTCYY 87 (421)
T ss_dssp EEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBS--------SSBHHHHHHHH-HTTTSCEEEEECSS------CEEEE
T ss_pred EEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCC--------CCCHHHHHHHH-HHhCCceeeeeccc------eEEEE
Confidence 4677777876555443 23345677777764321 111 2444444 45566665555431 23455
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCC--CChhHHHHHhcc
Q psy8066 396 ASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIEN 473 (529)
Q Consensus 396 ~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~~ 473 (529)
+.+.+++.+++++.+.+.+... .++++++++.|..++..+....+++...+.......+..+.+ .......+.|++
T Consensus 88 ~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~ 165 (421)
T 3hdi_A 88 AKVLDDHAGQAIDTLSDMFFHS--TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNS 165 (421)
T ss_dssp EEEEGGGHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHh
Confidence 6667788999888887776432 499999999999999999988888887776666555544332 112224688899
Q ss_pred CCHHHHHHHHHHhccCC-CeEEEEcCCCCCCCHHHHHHHhh
Q psy8066 474 VTEDDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 474 vT~edi~~~a~~~l~~~-~~~~vvG~~~~~p~~~~~~~~~~ 513 (529)
+|.+|++++.++++.++ ..++++||.. -.-.+.+.+.|+
T Consensus 166 it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~ 205 (421)
T 3hdi_A 166 FNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFS 205 (421)
T ss_dssp CCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhc
Confidence 99999999999999974 6789999987 222233444444
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.98 E-value=0.00033 Score=71.15 Aligned_cols=171 Identities=12% Similarity=0.139 Sum_probs=115.5
Q ss_pred CceeEEEEecCCCCCC--CCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEeeeccccCccceEEEE
Q psy8066 318 ELSHVVIGLEGVSHQD--PDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 318 ~~~~v~~~~~~~~~~~--~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~ 395 (529)
+...+.+.+.+....+ .......++.+++..|. .. ...+..|..++++... ....++
T Consensus 21 ~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt------------~~---~~~~~~G~~~na~t~~------~~t~~~ 79 (431)
T 3cx5_A 21 HTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKE------------NS---AVAAKEGLALSSNISR------DFQSYI 79 (431)
T ss_dssp SSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHH------------HH---HHHHHTTCEEEEEECS------SCEEEE
T ss_pred CEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCC------------Cc---ccHHHcCCeeeeeecC------CeEEEE
Confidence 3467888887655443 34556678888876431 11 1235567666555432 134667
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHhcCCC--CChhHHHHHh
Q psy8066 396 ASAPPSNVKNIVDVLVKELVTMAGP-IDADELSRAKKQLQSMLLMNLEAR-PAVFEDVGRQVLATGHR--KRPSTYIESI 471 (529)
Q Consensus 396 ~~~~~~~~~~~i~~i~~~l~~l~~~-it~~el~~ak~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~--~~~~~~~~~i 471 (529)
+.+.+++++.+++.+.+.+...... +++++|++.|..++..+....+++ ...+.......+..+.+ .......+.|
T Consensus 80 ~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 159 (431)
T 3cx5_A 80 VSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESL 159 (431)
T ss_dssp EEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHH
T ss_pred EEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Confidence 7788889999999888777543211 899999999999999988766677 66655554444433322 1223356888
Q ss_pred ccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHhh
Q psy8066 472 ENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 472 ~~vT~edi~~~a~~~l~~-~~~~~vvG~~~~~p~~~~~~~~~~ 513 (529)
+++|.+|+++++++++.+ +..++++||... +++.+.+.
T Consensus 160 ~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~----~~~~~~~~ 198 (431)
T 3cx5_A 160 ENLVVADLESFANNHFLNSNAVVVGTGNIKH----EDLVNSIE 198 (431)
T ss_dssp HTCCHHHHHHHHHHHSCGGGEEEEEEESCCH----HHHHHHHT
T ss_pred hhCCHHHHHHHHHhcCCCCcEEEEEEcCCCH----HHHHHHHH
Confidence 999999999999999986 578899999763 55555554
No 27
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.98 E-value=0.00018 Score=72.64 Aligned_cols=177 Identities=11% Similarity=0.050 Sum_probs=116.0
Q ss_pred ceeEEEEecCCCCCCC--CcHHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHhhhcCceEEEeeeccccCccceEEEE
Q psy8066 319 LSHVVIGLEGVSHQDP--DFVPACVLNILMGGGG-SFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 319 ~~~v~~~~~~~~~~~~--~~~~~~vl~~iLg~~~-~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~ 395 (529)
...+.+.+......++ ..-...++.+++..|+ .|+ ...+.+.+ +..|...+++... -...++
T Consensus 23 ~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~--------~~~~~~~l-~~~G~~~na~t~~------d~t~y~ 87 (406)
T 3eoq_A 23 SVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMD--------ALAVNRAF-DRMGAQYNAFTSE------EATVYY 87 (406)
T ss_dssp CEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCC--------HHHHHHHH-HHTTCEEEEEECS------SCEEEE
T ss_pred eEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCC--------HHHHHHHH-HHhCCCccceecC------CeEEEE
Confidence 4677788876554443 2334567777776442 111 02444444 4556655555432 224556
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCC--CChhHHHHHhcc
Q psy8066 396 ASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIEN 473 (529)
Q Consensus 396 ~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~~ 473 (529)
+.+.+++.+++++.+.+.+ .- .+++++|++.|..++..+....+++...+.......+..+.+ .......+.|++
T Consensus 88 ~~~~~~~l~~~l~ll~d~~-~p--~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~ 164 (406)
T 3eoq_A 88 GAVLPEFAYDLLGLFAKLL-RP--ALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITA 164 (406)
T ss_dssp EEECGGGHHHHHHHHHHHT-SC--CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHh-cC--CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh
Confidence 6778888998888887665 32 399999999999999999988888887776666555544332 112234678899
Q ss_pred CCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHhh
Q psy8066 474 VTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 474 vT~edi~~~a~~~l~~-~~~~~vvG~~~~~p~~~~~~~~~~ 513 (529)
+|.+|++++.++++.+ +..++++||...---.+.+.+.|+
T Consensus 165 ~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~ 205 (406)
T 3eoq_A 165 LTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTE 205 (406)
T ss_dssp CCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhc
Confidence 9999999999999987 578899999743112223444453
No 28
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=97.93 E-value=0.00045 Score=68.15 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=112.2
Q ss_pred ceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcc-cHHHHHHhhhcCceEEEeeeccccCccceEEEEEE
Q psy8066 319 LSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMY-TRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHAS 397 (529)
Q Consensus 319 ~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~-srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~~~ 397 (529)
...+.+.+.+....+...-...++.+++..|.. ... ..+.+.+ +..|..++++... -...+++.
T Consensus 12 ~v~~~~~~~~Gs~~e~~~G~ah~leh~lf~Gt~--------~~~~~~l~~~l-~~~G~~~na~t~~------~~t~~~~~ 76 (352)
T 3cx5_B 12 ISTLAVKVHGGSRYATKDGVAHLLNRFNFQNTN--------TRSALKLVRES-ELLGGTFKSTLDR------EYITLKAT 76 (352)
T ss_dssp EEEEEEEESCSGGGCSSTTHHHHHHHHTTSCBS--------SSCHHHHHHHH-HHHTCEEEEEECS------SCEEEEEE
T ss_pred eEEEEEEEeeeccCCCcccHHHHHHHHhccCcC--------CCCHHHHHHHH-HHhCCeEEEEEcc------ceEEEEEE
Confidence 456666666544333445566778887754321 111 2344443 5567666655432 24556667
Q ss_pred eCCCCHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCCCChhHHHHHhccCCH
Q psy8066 398 APPSNVKNIVDVLVKELVTMAGPIDADELS-RAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTE 476 (529)
Q Consensus 398 ~~~~~~~~~i~~i~~~l~~l~~~it~~el~-~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vT~ 476 (529)
+.+++.+.+++.+.+.+... .+++++|+ +.|..++..+....+++...+.......+.......+. ..+.|+++|.
T Consensus 77 ~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~-~~~~l~~it~ 153 (352)
T 3cx5_B 77 FLKDDLPYYVNALADVLYKT--AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPL-LYDGVERVSL 153 (352)
T ss_dssp EEGGGHHHHHHHHHHHHHHB--CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCS-SCCSSSCCCH
T ss_pred echhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCcc-chhhhccCCH
Confidence 77788999888888777543 49999998 99999999998877888776655544444322112222 2578999999
Q ss_pred HHHHHHHHHhccCC-CeEEEEcCCCCCCCHHHHHHHh
Q psy8066 477 DDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSGI 512 (529)
Q Consensus 477 edi~~~a~~~l~~~-~~~~vvG~~~~~p~~~~~~~~~ 512 (529)
+|+++++++++.++ ..++++| . +.+++.+.+
T Consensus 154 ~~l~~f~~~~y~~~n~~l~v~G-~----~~~~~~~~i 185 (352)
T 3cx5_B 154 QDIKDFADKVYTKENLEVSGEN-V----VEADLKRFV 185 (352)
T ss_dssp HHHHHHHHHHCCGGGEEEEEES-S----CHHHHHHHH
T ss_pred HHHHHHHHHhCCcCcEEEEEeC-C----CHHHHHHHH
Confidence 99999999999874 5688888 5 455555554
No 29
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.91 E-value=0.00036 Score=71.24 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=108.7
Q ss_pred CceeEEEEecCCCCCCC--CcHHHHHHHHhhcCCCCCCCCCCCCCcc-cHHHHHHhhhcCceEEEeeeccccCccceEEE
Q psy8066 318 ELSHVVIGLEGVSHQDP--DFVPACVLNILMGGGGSFSAGGPGKGMY-TRLYTNVLNRHHWMFSATAYNHAYADTGLFCI 394 (529)
Q Consensus 318 ~~~~v~~~~~~~~~~~~--~~~~~~vl~~iLg~~~~f~~~~~~~g~~-srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i 394 (529)
+...+.+.+......++ ......++.+++..|.. ... ..|.+. .+..|...+++... -...+
T Consensus 27 ~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~--------~~~~~~l~~~-l~~~g~~~na~t~~------~~t~~ 91 (443)
T 1hr6_B 27 SSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQ--------NRPQQGIELE-IENIGSHLNAYTSR------ENTVY 91 (443)
T ss_dssp SEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBS--------SCBHHHHHHH-HHHTTCEEEEEECS------SEEEE
T ss_pred CEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCC--------CCCHHHHHHH-HHHcCCeEEEEECC------CeEEE
Confidence 35677777776554432 34455677777653321 111 234443 34446554444322 13456
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCC--CChhHHHHHhc
Q psy8066 395 HASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIE 472 (529)
Q Consensus 395 ~~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~ 472 (529)
++.+.+++++.+++.+.+.+... .++++++++.|..++..+....+++...+.......+..+.+ ....-..+.|+
T Consensus 92 ~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~ 169 (443)
T 1hr6_B 92 YAKSLQEDIPKAVDILSDILTKS--VLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIK 169 (443)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHh
Confidence 66677788888888887776432 499999999999999999888888877665555444433322 11122467788
Q ss_pred cCCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy8066 473 NVTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 473 ~vT~edi~~~a~~~l~~-~~~~~vvG~~~ 500 (529)
++|.+|++++.++++.+ +..++++||..
T Consensus 170 ~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~ 198 (443)
T 1hr6_B 170 SITRTDLKDYITKNYKGDRMVLAGAGAVD 198 (443)
T ss_dssp HCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred hCCHHHHHHHHHhcCcCCCEEEEEEcCCC
Confidence 99999999999999987 56789999986
No 30
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.85 E-value=0.00025 Score=72.08 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=111.0
Q ss_pred CceeEEEEecCCCCCCC-CcHHHHHHHHhhcCCCCCCCCCCCCCcc-cHHHHHHhhhcCceEEEeeeccccCccceEEEE
Q psy8066 318 ELSHVVIGLEGVSHQDP-DFVPACVLNILMGGGGSFSAGGPGKGMY-TRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 318 ~~~~v~~~~~~~~~~~~-~~~~~~vl~~iLg~~~~f~~~~~~~g~~-srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~ 395 (529)
+...+.+.+.+....++ ......++..++..|.. ... ..+.+. .+..|..++++... ....++
T Consensus 34 ~~~~~~~~~~~Gs~~e~~~~g~a~lle~ll~~gt~--------~~~~~~l~~~-l~~~g~~~~a~t~~------~~~~~~ 98 (434)
T 3gwb_A 34 PMFDLRLIFAAGSSQDGNAPGVALLTNAMLNEGVA--------GKDVGAIAQG-FEGLGADFGNGAYK------DMAVAS 98 (434)
T ss_dssp SEEEEEEEESCSGGGCTTSTTHHHHHHHHGGGEET--------TEEHHHHHHH-HHTTTCEEEEEECS------SCEEEE
T ss_pred CEEEEEEEEecccccCCcchhHHHHHHHHHhcCcc--------cCCHHHHHHH-HHHhCCEEEeeecC------CeEEEE
Confidence 34678888876554433 33445677777754321 111 123333 34457776665542 234455
Q ss_pred EEeCCCC--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCC-C-ChhHHHHHh
Q psy8066 396 ASAPPSN--VKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR-K-RPSTYIESI 471 (529)
Q Consensus 396 ~~~~~~~--~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~i 471 (529)
+.+.+++ .+.+++.+.+.+... .+++++|++.|..++..+....+++...+.......+..+.+ . ......+.|
T Consensus 99 ~~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l 176 (434)
T 3gwb_A 99 LRSLSAVDKREPALKLFAEVVGKP--TFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSI 176 (434)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTT
T ss_pred EEecCccccHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Confidence 6666666 888888887666432 499999999999999999988888887776655555544332 1 112245788
Q ss_pred ccCCHHHHHHHHHHhccC-CCeEEEEcCCCC
Q psy8066 472 ENVTEDDIRRVASRLLTS-QPSVAARGELIN 501 (529)
Q Consensus 472 ~~vT~edi~~~a~~~l~~-~~~~~vvG~~~~ 501 (529)
+++|.+|+++++++++.+ +..++++||...
T Consensus 177 ~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~ 207 (434)
T 3gwb_A 177 PPITLAQLKAFHAKAYAAGNVVIALVGDLSR 207 (434)
T ss_dssp TTCCHHHHHHHHHHHSCGGGEEEEEEESCCH
T ss_pred HhCCHHHHHHHHHHhcCcCCeEEEEEcCCCH
Confidence 999999999999999987 568899999853
No 31
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.80 E-value=0.00095 Score=68.18 Aligned_cols=166 Identities=11% Similarity=0.084 Sum_probs=104.7
Q ss_pred CceeEEEEecCCCCCCC--CcHHHHHHHHhhcCC-CCCCCCCCCCCcccHHHHHHhhhcCceEEEeeeccccCccceEEE
Q psy8066 318 ELSHVVIGLEGVSHQDP--DFVPACVLNILMGGG-GSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCI 394 (529)
Q Consensus 318 ~~~~v~~~~~~~~~~~~--~~~~~~vl~~iLg~~-~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i 394 (529)
+...+.+.+.+....++ ..-...++..++..| ..|+ . ..|.+. .+..|...+++... +. ..+
T Consensus 27 ~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~----~----~~l~~~-l~~~g~~~na~t~~----d~--t~y 91 (445)
T 3ami_A 27 PTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVG----P----GEFSKR-VAAMGGRDNAFTTR----DY--TAY 91 (445)
T ss_dssp SEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSC----T----THHHHH-HHHTTCEEEEEECS----SC--EEE
T ss_pred CeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCC----H----HHHHHH-HHHhCCccccccCC----Ce--EEE
Confidence 34667777765443332 333445667776533 2222 1 344444 44456654444432 22 233
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHhcCCC-C-ChhHHHHHh
Q psy8066 395 HASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLL-MNLEARPAVFEDVGRQVLATGHR-K-RPSTYIESI 471 (529)
Q Consensus 395 ~~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~i 471 (529)
++.+.+++++.+++.+.+.+..- .+++++|++.|..++..+. ...+++..++.......+..+.+ . ...-..+.|
T Consensus 92 ~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l 169 (445)
T 3ami_A 92 YQQVPSSRLSDVMGLEADRMANL--VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDI 169 (445)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHH
T ss_pred EEECCHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHH
Confidence 44556778888888887666432 3999999999999999988 45567776655554444433322 1 112246788
Q ss_pred ccCCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy8066 472 ENVTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 472 ~~vT~edi~~~a~~~l~~-~~~~~vvG~~~ 500 (529)
+++|.+|+++++++++.+ +..++++||..
T Consensus 170 ~~it~~~l~~f~~~~y~p~n~~l~vvGd~d 199 (445)
T 3ami_A 170 QNMTAQDVRDWYKRWYGPNNATVVVVGDVE 199 (445)
T ss_dssp HHCCHHHHHHHHHHHCSGGGEEEEEEESCC
T ss_pred hhCCHHHHHHHHHHhCCccceEEEEEcCCC
Confidence 999999999999999986 57889999974
No 32
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.79 E-value=0.0005 Score=70.27 Aligned_cols=165 Identities=14% Similarity=0.122 Sum_probs=109.7
Q ss_pred ceeEEEEecCCCCCCC--CcHHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHhhhcCceEEEeeeccccCccceEEEE
Q psy8066 319 LSHVVIGLEGVSHQDP--DFVPACVLNILMGGGG-SFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 319 ~~~v~~~~~~~~~~~~--~~~~~~vl~~iLg~~~-~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~ 395 (529)
...+.+.+......++ ..-...++.+++..|+ +|+ . ..+.+.+ +..|...+++... + ...++
T Consensus 34 ~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~----~----~~~~~~l-~~~G~~~na~t~~----d--~t~~~ 98 (446)
T 1pp9_A 34 TCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRP----G----NALEKEV-ESMGAHLNAYSTR----E--HTAYY 98 (446)
T ss_dssp EEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSST----T----THHHHHH-HHTTCEEEEEECS----S--CEEEE
T ss_pred EEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCC----H----HHHHHHH-HHcCCEEEEEEcC----C--eEEEE
Confidence 4667777776554432 3344567777775432 121 1 2444443 4456655554432 1 24556
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCC--CChhHHHHHhcc
Q psy8066 396 ASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIEN 473 (529)
Q Consensus 396 ~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~~ 473 (529)
+.+..++.+++++.+.+.+... .++++++++.|..++..+....+++...+.......+..+.+ .......+.|++
T Consensus 99 ~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~ 176 (446)
T 1pp9_A 99 IKALSKDLPKAVELLADIVQNC--SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRK 176 (446)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHh
Confidence 6677778999998888877654 399999999999999999888888876665554444432221 111224677888
Q ss_pred CCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy8066 474 VTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 474 vT~edi~~~a~~~l~~-~~~~~vvG~~~ 500 (529)
+|.+|++++.++++.+ +..++++||..
T Consensus 177 ~~~~~l~~f~~~~y~p~n~~l~v~Gd~~ 204 (446)
T 1pp9_A 177 LSRADLTEYLSRHYKAPRMVLAAAGGLE 204 (446)
T ss_dssp CCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred CCHHHHHHHHHhccCCCCEEEEEEcCCC
Confidence 9999999999999987 46789999986
No 33
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.76 E-value=0.00077 Score=68.57 Aligned_cols=163 Identities=12% Similarity=0.043 Sum_probs=109.4
Q ss_pred CceeEEEEecCCCCCCC--CcHHHHHHHHhhcCCCCCCCCCCCCCcc-cHHHHHHhhhcCceEEEeeeccccCccceEEE
Q psy8066 318 ELSHVVIGLEGVSHQDP--DFVPACVLNILMGGGGSFSAGGPGKGMY-TRLYTNVLNRHHWMFSATAYNHAYADTGLFCI 394 (529)
Q Consensus 318 ~~~~v~~~~~~~~~~~~--~~~~~~vl~~iLg~~~~f~~~~~~~g~~-srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i 394 (529)
+...+.+.+......++ ......++..++..|.. ++. ..+.+. .+..|..++++.. .....+
T Consensus 43 ~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~--------~~~~~~~~~~-l~~~G~~~na~t~------~~~t~~ 107 (439)
T 1pp9_B 43 PASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTK--------GASSFKITRG-IEAVGGKLSVTST------RENMAY 107 (439)
T ss_dssp SEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBS--------SSCHHHHHHH-HHHTTCEEEEEEC------SSCEEE
T ss_pred ceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCC--------cCCHHHHHHH-HHHhCCeEEEEec------ceEEEE
Confidence 45777888876554332 34556777887754321 111 234433 3455776655443 234556
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCC--CChhHHHHHhc
Q psy8066 395 HASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIE 472 (529)
Q Consensus 395 ~~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~ 472 (529)
++.+.+++.+.+++.+.+.+... .+++++|++.|..++..+....+++...+.......+. +.+ .......+.|+
T Consensus 108 ~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~ 184 (439)
T 1pp9_B 108 TVECLRDDVDILMEFLLNVTTAP--EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAY-RNALANSLYCPDYRIG 184 (439)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHB-SSGGGSCSSCCGGGTT
T ss_pred EEEeehhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-cCCCCCCccCCHHHHh
Confidence 66777788999888887776432 49999999999999999988777887766555554443 221 11123456789
Q ss_pred cCCHHHHHHHHHHhccC-CCeEEEEcC
Q psy8066 473 NVTEDDIRRVASRLLTS-QPSVAARGE 498 (529)
Q Consensus 473 ~vT~edi~~~a~~~l~~-~~~~~vvG~ 498 (529)
++|.+|++++.++++.+ +..++++|+
T Consensus 185 ~it~~~l~~f~~~~y~~~~~~l~v~G~ 211 (439)
T 1pp9_B 185 KVTPVELHDYVQNHFTSARMALIGLGV 211 (439)
T ss_dssp TCCHHHHHHHHHHHCSGGGEEEEEESS
T ss_pred hcCHHHHHHHHHHhCCCCceEEEEeCC
Confidence 99999999999999987 578899998
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.75 E-value=0.00048 Score=69.71 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=110.0
Q ss_pred ceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCc-cc-HHHHHHhhhc-CceEEEeeeccccCccceEEEE
Q psy8066 319 LSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGM-YT-RLYTNVLNRH-HWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 319 ~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~-~s-rL~~~lR~~~-gl~Y~v~a~~~~~~~~g~~~i~ 395 (529)
...+.+.+..+... +......++..++..|.. +. .. .+... .+.. |..++++...... ...+.++
T Consensus 24 ~~~~~~~~~~g~~~-e~~g~a~ll~~~l~~gt~--------~~~~~~~~~~~-l~~~~G~~~~a~t~~~~t--~~~~~~~ 91 (425)
T 3d3y_A 24 TVRLLVRFNTRLNH-ETITKRTLLSSLMETNSL--------NYPNQVKLSER-LAELYGASFGIGVSKKGN--QHWFNIS 91 (425)
T ss_dssp EEEEEEEEEEECCT-TTHHHHHHHHHHHHHCCS--------SSCSHHHHHHH-HHHTTSCEEEEEEEEETT--EEEEEEE
T ss_pred eEEEEEEEeCCCCc-cchhHHHHHHHHHHhhhh--------cCCCHHHHHHH-HHHHhCceEeeeeeecCc--eEEEEEE
Confidence 46677777755433 334456777777753321 11 11 24333 3443 7777776653221 2234556
Q ss_pred EEeCCC-------CHHHHHHHHHHHHHHhc--C-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHh-cCCC-C-
Q psy8066 396 ASAPPS-------NVKNIVDVLVKELVTMA--G-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLA-TGHR-K- 462 (529)
Q Consensus 396 ~~~~~~-------~~~~~i~~i~~~l~~l~--~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~- 462 (529)
+.+.++ +.+.+++.+.+.+.... . ++++++|++.|..++..+....+++...+.......+. .+.+ .
T Consensus 92 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 171 (425)
T 3d3y_A 92 MNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKI 171 (425)
T ss_dssp EEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTTTS
T ss_pred EEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCccC
Confidence 655443 68888888887775432 1 28999999999999999988777887766555555554 2322 1
Q ss_pred ChhHHHHHhccCCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy8066 463 RPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 463 ~~~~~~~~i~~vT~edi~~~a~~~l~~-~~~~~vvG~~~ 500 (529)
......+.|+++|.+|++++.++++.+ +..++++||..
T Consensus 172 ~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 210 (425)
T 3d3y_A 172 PSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVN 210 (425)
T ss_dssp CTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 123346788899999999999999976 57889999975
No 35
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.61 E-value=0.00098 Score=68.77 Aligned_cols=164 Identities=12% Similarity=0.029 Sum_probs=109.6
Q ss_pred ceeEEEEecCCCCCC--CCcHHHHHHHHhhcCCCCCCCCCCCCCcc-cHHHHHHhhhcCceEEEeeeccccCccceEEEE
Q psy8066 319 LSHVVIGLEGVSHQD--PDFVPACVLNILMGGGGSFSAGGPGKGMY-TRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 319 ~~~v~~~~~~~~~~~--~~~~~~~vl~~iLg~~~~f~~~~~~~g~~-srL~~~lR~~~gl~Y~v~a~~~~~~~~g~~~i~ 395 (529)
...+.+.+......+ ...-...++..++..|+. ... ..+... .+..|..++++... -...++
T Consensus 26 ~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~--------~~~~~~~~~~-le~~G~~~na~t~~------d~t~y~ 90 (475)
T 1hr6_A 26 FSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTE--------HVEGRAMAET-LELLGGNYQCTSSR------ENLMYQ 90 (475)
T ss_dssp SEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBT--------TBCHHHHHHH-HHHTTSCEEEEECS------SCEEEE
T ss_pred EEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCC--------CCCHHHHHHH-HHHcCCEEEEEEcc------CeEEEE
Confidence 477778887655433 234455677777764321 111 234333 34557766665432 135566
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCC--CChhHHHHHhcc
Q psy8066 396 ASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIEN 473 (529)
Q Consensus 396 ~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~~ 473 (529)
+.+.+++++.+++.+.+.+... .+++++|++.|..++..+....+++...+.......+..+.+ .......+.|++
T Consensus 91 ~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~ 168 (475)
T 1hr6_A 91 ASVFNQDVGKMLQLMSETVRFP--KITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPS 168 (475)
T ss_dssp EEECGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGG
T ss_pred EEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh
Confidence 6778888998888887776533 499999999999999999887788877766665555543321 111223577899
Q ss_pred CCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy8066 474 VTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 474 vT~edi~~~a~~~l~~-~~~~~vvG~~~ 500 (529)
+|.+|+++++++++.+ +..++++| ..
T Consensus 169 it~~~l~~f~~~~y~p~n~~l~v~G-~d 195 (475)
T 1hr6_A 169 ISKYYLLDYRNKFYTPENTVAAFVG-VP 195 (475)
T ss_dssp CCHHHHHHHHHHHCCGGGEEEEEES-SC
T ss_pred cCHHHHHHHHHHhCCcccEEEEEeC-CC
Confidence 9999999999999987 56788899 53
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=95.65 E-value=0.19 Score=51.68 Aligned_cols=184 Identities=14% Similarity=0.044 Sum_probs=102.5
Q ss_pred EEEecCCCeeEEEEEEecCCCCCCCCCCCH-----HHHHHHhhhcCCCCCCCHHHHHHHHH---HhCCEeEEee----cc
Q psy8066 76 ASENRFGSFCTIGVIIDSGSRYEQPYPSGV-----SHFLEKLAFNSTSEYVNKDAIAQSLE---KIGGICDCLS----SR 143 (529)
Q Consensus 76 ~~~~~~~~~~~~~l~v~~G~~~e~~~~~Gl-----a~lle~l~~~gt~~~~~~~~l~~~l~---~~g~~~~~~t----~~ 143 (529)
...+.+.+...+.+.+++.....+. ...+ ..++..+++. .+...+. +.|..++++. .+
T Consensus 258 ~~~~~~~~q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg~---------~L~~~lre~~~~gl~y~~~s~~~~~~ 327 (492)
T 3go9_A 258 SLMNEQAAQDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALFW---------HIKQVLEKNNQKNLKLGFDCRVQYQR 327 (492)
T ss_dssp EEEESSCSSEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHHH---------HHHHHHHHSCCTTCEEEEEEEEETTE
T ss_pred EEEcCCCCCcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhccccccccCchhhhhh
Confidence 3334445556666777666544332 1122 2344445431 3333443 3455444433 23
Q ss_pred ceeEEEEEeCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhcC---CChHHHHHHHHHHhccCCCCCC
Q psy8066 144 DTFIYAASAATSGLDTVMKILGDVVL---RPKFSEEEINMARQTIQFELENYQMR---PEQETLLMDMIHAAAYKDNTLG 217 (529)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~el~~~~~~---p~~~~~~~~~l~~~l~~~~~~~ 217 (529)
+...+.+.+..++++++++.+.+.+. .-.+++++++++|..+...+...... ......+.+.+...+. +..++
T Consensus 328 ~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~ 406 (492)
T 3go9_A 328 AQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQS-GVVDI 406 (492)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHH-TCCCB
T ss_pred cceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCcC
Confidence 34567777788899998888877654 34699999999999988886643211 1113344444433332 22222
Q ss_pred CCC--CCC-ccccCCCCHHHHHHHHHhhccCCCeEEEEec-CCHH-HHHHHHHhhhcc
Q psy8066 218 LPK--LCP-PASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHE-ALVEAANKYFVD 270 (529)
Q Consensus 218 ~~~--~g~-~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G-~~~~-~l~~~~~~~f~~ 270 (529)
.+. ... .+.|+++|.++++++.++++.+++..+++.+ -..+ .+.++.+.|-..
T Consensus 407 ~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~~~~ 464 (492)
T 3go9_A 407 APEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIYNGI 464 (492)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHHHHH
Confidence 110 001 2348899999999999999998655555544 3333 244555554443
No 37
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=26.95 E-value=1.3e+02 Score=21.27 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCEeEEeeccceeEEEEEeCCCCHHHHHHHHHHhhc
Q psy8066 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169 (529)
Q Consensus 123 ~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 169 (529)
...+...+++.|+.+--....+...+.+.++.+..+.+.+.|.+...
T Consensus 19 ~g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~ 65 (76)
T 3lh2_S 19 ITGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSG 65 (76)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhC
Confidence 35688889999998766666777999999999999999999888764
Done!