RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8066
(529 letters)
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function
prediction only].
Length = 438
Score = 226 bits (579), Expect = 1e-68
Identities = 121/435 (27%), Positives = 201/435 (46%), Gaps = 34/435 (7%)
Query: 60 NDRNTQVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTS 118
QV TLPNGLRV + + ++ V + +GSR E +G++HFLE +AF T+
Sbjct: 13 ALPGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTT 72
Query: 119 EYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEI 178
+ + +A++ EK+GG + +S D +Y S LD + +L D++L P F EEE+
Sbjct: 73 GLPSAE-LAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEV 131
Query: 179 NMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
+ I E+ Q P+ L + + A Y ++ LG P L SI I L +
Sbjct: 132 EREKGVILEEIRMRQDDPDD--LAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDF 189
Query: 239 LKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYT 297
+ +Y P MV+ +G V+ E +VE KYF D P I
Sbjct: 190 YQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPG---------AAPPPKIPPEPPLGP 240
Query: 298 GGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGP 357
+V+ L E + + +G G + PD A +L + GGG S
Sbjct: 241 ERVVRVN-----DPEQPDL-EQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSS---- 290
Query: 358 GKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTM 417
RL+ + + +S ++++ +D+GLF I+A P N + +++ + L +
Sbjct: 291 ------RLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKAL 344
Query: 418 A----GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIEN 473
GP +EL AK+ L +LL++L++ ++ E +G+ +L G +E IE
Sbjct: 345 KKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERIEA 404
Query: 474 VTEDDIRRVASRLLT 488
VT +D+ VA +LL
Sbjct: 405 VTLEDVNAVAKKLLA 419
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16).
Length = 149
Score = 140 bits (355), Expect = 1e-39
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 74 RVASE-NRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK 132
RVASE + +G+ ID+GSRYE +G++HFLE +AF T +Y + + + LEK
Sbjct: 1 RVASEHDPPADTSAVGLWIDAGSRYEPDDNNGLAHFLEHMAFKGTKKY-PSEDLEEELEK 59
Query: 133 IGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENY 192
+GG + +SR+ +Y L + L D L P FS E+ R + +E+E
Sbjct: 60 LGGSLNAYTSREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPSEVERERLVVLYEVEAV 119
Query: 193 QMRPEQETLLMDMIHAAAYKDNTLGLPKLCP 223
P+ +L+D +HAAAY+ LG L P
Sbjct: 120 DAEPQA--VLLDNLHAAAYRGTPLGRSLLGP 148
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.
Peptidase M16 consists of two structurally related
domains. One is the active peptidase, whereas the other
is inactive. The two domains hold the substrate like a
clamp.
Length = 182
Score = 113 bits (284), Expect = 3e-29
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 29/207 (14%)
Query: 230 INNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPV 288
+ L + K +Y+P MV+ +G V+ + L+ A KYF D + K
Sbjct: 2 LTREDLKDFYKKHYSPDNMVLVVVGDVDLDELLALAEKYFGDLPASPPKPKP------RE 55
Query: 289 IDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVS-HQDPDFVPACVLNILMG 347
TG V + + + G DPD VL L+G
Sbjct: 56 PPLEPEELTGKEVVVP---------DKDVPQAKLALAFPGPPLGNDPDSAALDVLAELLG 106
Query: 348 GGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIV 407
GG +RL+ + + +S +A+ +Y+DTGLF I+A P N+ ++
Sbjct: 107 GG-----------ASSRLFQELREKEGLAYSVSAFFDSYSDTGLFGIYADLDPENLDEVI 155
Query: 408 DVLVKELVTMA-GPIDADELSRAKKQL 433
+++ +EL +A I +EL RAK QL
Sbjct: 156 ELIFEELKKLAEEGITEEELERAKAQL 182
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification, protein
turnover, chaperones].
Length = 937
Score = 39.7 bits (93), Expect = 0.004
Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 40/232 (17%)
Query: 61 DRNTQVTTLPNGLR---VASENRFGSFCTIGVIIDSGSRYEQP--YPSGVSHFLEKLAFN 115
DR + LPNGLR V+ S + V + S ++ P YP G++HFLE + F
Sbjct: 21 DRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGS---FDDPEEYP-GLAHFLEHMLFM 76
Query: 116 STSEYVNKDAIAQSLEKIGGICDC--LSSRDTFIYAASAAT--SGLDTVMKILGDVVLRP 171
+ +Y ++ ++ L K GG + R F + LD D + P
Sbjct: 77 GSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVENDALEGALDR----FADFFIEP 132
Query: 172 KFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVIN 231
F++E ++ R + E + M + M + A L P + N
Sbjct: 133 LFNKEALDRERNAVNSE---FTMNLTSDGWRMYQVQA-------LTANPGHPLSKFSTGN 182
Query: 232 NNTL------------FTYLKNYYTPTRMVVAGIGVEH-EALVEAANKYFVD 270
TL + + +Y+ M + G + + L + A F D
Sbjct: 183 LETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGD 234
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and is
thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 35.6 bits (82), Expect = 0.070
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 68 TLPNGLRVA-SENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAI 126
TLPNGLRV + + +GS E G++HFLE L F + D +
Sbjct: 4 TLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRL 63
Query: 127 AQSLEKIGGICD---CLSSRDTFI-YAASAATSGLDTVMKILGDVVLRPKFSEEEINMAR 182
+++ GG + + F A+A +GL L D++ RP + E+ R
Sbjct: 64 MPWVQRQGGQVNATTLERTTAFFFELPAAALAAGLAR----LCDMLARPLLTAEDQQRER 119
Query: 183 QTIQFELENYQMRPEQETLLMD 204
+ ++ E Y L +
Sbjct: 120 EVLEAE---YIAWQNDADTLRE 138
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 31.9 bits (73), Expect = 0.84
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 171 PKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAA--AYKDNTLGLPKL 221
F +EE+ AR+ I+ ELE + + ++ A + L LP L
Sbjct: 257 EDFDDEELEEARKLIEAELEKLKGEMGHQEESLEEFDEAWSELNEQVLFLPGL 309
>gnl|CDD|213407 cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is
a Nmeni subtype-specific Cas protein, which may function
in the adaptation process which mediates the
incorporation of foreign nucleic acids into the
microbial host genome. Csn 2 may interact directly with
double-stranded DNA. CRISPR (Clustered Regularly
Interspaced Short Palindromic Repeats) and associated
Cas proteins comprise a system for heritable host
defense by prokaryotic cells against phage and other
foreign DNA; Csn2 has been predicted to be a functional
analog of Cas4 based on anti-correlated phyletic
patterns; also known as SPy1049 family.
Length = 223
Score = 30.6 bits (70), Expect = 1.6
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 26/108 (24%)
Query: 106 SHFLEKLAFNSTSEYVNKDAI-AQSLEKIGGICDCLSSRDTFI-----YAASAATSGLDT 159
S FLEKL + E ++ I Q L K G S D+ + Y L
Sbjct: 108 SSFLEKLGLSLPYELEFEEEIDMQDLLKAFGF-KIEESYDSLLENLIDY--------LKI 158
Query: 160 VMKILGD-----VVLRPKFSEEEINMARQTIQFE------LENYQMRP 196
+ ++L V LR +EEE+ + + LEN R
Sbjct: 159 LSELLKKKIFVFVNLRTFLTEEELEELYEHALYNKIKVLLLENSLDRD 206
>gnl|CDD|227313 COG4980, GvpP, Gas vesicle protein [General function prediction
only].
Length = 115
Score = 29.3 bits (66), Expect = 2.1
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 144 DTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQET 200
D + A + +T+ G++ K +E+I + ++ E+E+ Q ET
Sbjct: 54 DILMIADKLSKESAETLKDQGGEIKESVKKWKEDIQPEIERLKSEIEDLQEAISDET 110
>gnl|CDD|221378 pfam12013, DUF3505, Protein of unknown function (DUF3505). This
family of proteins is functionally uncharacterized. This
protein is found in eukaryotes. Proteins in this family
are typically between 247 to 1018 amino acids in length.
This region contains two segments that are likely to be
C2H2 zinc binding domains.
Length = 108
Score = 28.9 bits (65), Expect = 2.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 33 PPPSFQQPPLSTPLPGLPKVH--YSCVKDNDRNTQVTTLPNGLR 74
P LS P+PGLP V+ Y C +D +T +R
Sbjct: 58 PEAVQWPSALSPPIPGLP-VYDGYRCQRDPPGCPYITRSLKTMR 100
>gnl|CDD|227071 COG4727, COG4727, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 287
Score = 29.6 bits (66), Expect = 4.0
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 9/119 (7%)
Query: 385 AYADTGLFCIHASAPPSNVKNIVDV---LVKELVTMAGPIDADELSRAKKQLQSMLLMNL 441
A A T FC A P+ + + +V++LV +SR+ + L L
Sbjct: 22 ARAATQ-FCDRAQPFPAGQQARLLRAAAVVQQLVAAPEA-GVVIISRSGQDLSRFRLRYS 79
Query: 442 EARPAVFEDVG----RQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAAR 496
A A G R +L R Y + + T DD ++ A
Sbjct: 80 HAAIAWRSPAGAWRVRHLLNACDEGRSRLYDQGLAGFTMDDPSLGYISIVRLPADAADA 138
>gnl|CDD|225891 COG3355, COG3355, Predicted transcriptional regulator
[Transcription].
Length = 126
Score = 28.4 bits (64), Expect = 4.3
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 407 VDVLVKELVTMAGPIDADEL--------SRAKKQLQSMLLMNLEARPAVFEDVGR 453
V+V K L+ GP+ DEL S + LQ++L L R V G
Sbjct: 30 VEVY-KALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVNLKGGG 83
>gnl|CDD|217816 pfam03959, FSH1, Serine hydrolase (FSH1). This is a family of
serine hydrolases.
Length = 209
Score = 28.8 bits (65), Expect = 5.5
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 1 MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQ---QPPLSTP 45
+A + L G ++ + S +P P + PP+ TP
Sbjct: 113 LAAILASLLEEGLPLESHPPLKFAILISGFRPREPKYAEYYSPPIQTP 160
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 29.2 bits (66), Expect = 5.6
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 447 VFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVAS 484
FE ++ G R R IE E V+ D I R A
Sbjct: 353 AFEKARKKNGLKGLRHR----IEHAELVSPDQIERFAK 386
>gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD
subunit. This family is GlgD, an apparent regulatory
protein that appears in an alpha2/beta2 heterotetramer
with GlgC (glucose-1-phosphate adenylyltransferase,
TIGR02091) in a subset of bacteria that use GlgC for
glycogen biosynthesis [Energy metabolism, Biosynthesis
and degradation of polysaccharides].
Length = 369
Score = 29.3 bits (66), Expect = 6.2
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 487 LTSQPSVAA-----RGELINFPSYEDIHSGIQNNGVLPRKGRISSV 527
LT +A+ R LI+FP +++GI+N + + S+
Sbjct: 19 LTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSL 64
>gnl|CDD|233600 TIGR01854, lipid_A_lpxH, UDP-2,3-diacylglucosamine hydrolase. This
model represents LpxH, UDP-2,3-diacylglucosamine
hydrolase, and essential enzyme in E. coli that
catalyzes the fourth step in lipid A biosynthesis. Note
that Pseudomonas aeruginosa has both a member of this
family that shares this function and a more distant
homolog, designated LpxH2, that does not. Many species
that produce lipid A lack an lpxH gene in this family;
some of those species have an lpxH2 gene instead,
although for which the function is unknown [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 231
Score = 28.6 bits (64), Expect = 6.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 427 SRAKKQLQSMLLM--NLEARPAVFEDVGRQVLATGHRKRPS 465
SRA KQ++S +M N AV G L GH RP+
Sbjct: 158 SRADKQMKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPA 198
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA
ligase-associated. Members of this protein family are
DEAD/DEAH box helicases found associated with a
bacterial ATP-dependent DNA ligase, part of a four-gene
system that occurs in about 12 % of prokaryotic
reference genomes. The actual motif in this family is
DE[VILW]H.
Length = 803
Score = 29.1 bits (66), Expect = 6.6
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 408 DVLVKELVTMA--GPIDADEL 426
DVL + L+T+A G D DEL
Sbjct: 388 DVLAQHLLTLACGGGFDPDEL 408
>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the AMPA receptor. N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the AMPA
(alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid) receptor, a member of the glutamate-receptor ion
channels (iGluRs). AMPA receptors are the major
mediators of excitatory synaptic transmission in the
central nervous system. While this N-terminal domain
belongs to the periplasmic-binding fold type I
superfamily, the glutamate-binding domain of the iGluR
is structurally homologous to the periplasmic-binding
fold type II. The LIVBP-like domain of iGluRs is thought
to play a role in the initial assembly of iGluR
subunits, but it is not well understood how this domain
is arranged and functions in intact iGluR. AMPA
receptors consist of four types of subunits (GluR1,
GluR2, GluR3, and GluR4) which combine to form a
tetramer and play an important roles in mediating the
rapid excitatory synaptic current.
Length = 382
Score = 28.8 bits (65), Expect = 6.7
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 26/133 (19%)
Query: 87 IGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSE----------YVNKDAIAQSLEKIGGI 136
IG + D E S F ++ ++T+ +V+ + S I
Sbjct: 2 IGGLFDVDEDQEY------SAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAI 55
Query: 137 CDCLSSRDTFIYAASAATSGLDTVMKILGDV---VLRPKFSEEEINMARQTIQFELENYQ 193
C LS R F S S ++T+ + + P F ++ QF L Q
Sbjct: 56 CSQLS-RGVFAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDL---DDGNQFVL---Q 108
Query: 194 MRPEQETLLMDMI 206
MRP L+D+I
Sbjct: 109 MRPSLIQALVDLI 121
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 29.2 bits (66), Expect = 6.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 155 SGLDTVMK--ILG-DVVLRPKFSEEEIN 179
SGL +M+ I G VVL KF E+IN
Sbjct: 195 SGLSILMRSVIYGMRVVLVEKFDAEKIN 222
>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ
is a Bacillus subtilis ORF of unknown function. The
Arabidopsis homolog LAF3 has been identified as a factor
required for photochrome A signalling.
Length = 479
Score = 28.8 bits (65), Expect = 8.3
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 446 AVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVAS 484
E + HR R IE + V+ DDI R A
Sbjct: 326 DALEAALKDNPRADHRHR----IEHAQLVSPDDIPRFAK 360
>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 275
Score = 28.3 bits (63), Expect = 9.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 455 VLATGHRKRPSTYIESIENVTEDDIRRVAS--RLLTSQPSVAARGELINFPS 504
V +T + R +E++ N+ E + RR+A R+ ++ V A G FP
Sbjct: 93 VFSTDNFSRSPAEVETLMNLFEREARRMAVDPRIHANRVRVRAIGRHDGFPP 144
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 28.7 bits (64), Expect = 9.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 486 LLTSQPSVAARGELINFPSYEDIHSGIQNNGVLPRKGR 523
LL+ PS+ ++ FPS+ I SG++N LP G
Sbjct: 55 LLSKHPSI--ETLVLPFPSHPSIPSGVENVKDLPPSGF 90
>gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed.
Length = 336
Score = 28.3 bits (64), Expect = 9.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 416 TMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR----KRPSTYIESI 471
T AG + +E+ + K+ SM LM E ++L T HR K P +E+I
Sbjct: 108 TNAGILTREEMEKLKEVNASMGLM--------LEQTSPRLLNTVHRGSPGKDPELRLETI 159
Query: 472 EN 473
EN
Sbjct: 160 EN 161
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,049,105
Number of extensions: 2658888
Number of successful extensions: 2529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2512
Number of HSP's successfully gapped: 28
Length of query: 529
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 428
Effective length of database: 6,457,848
Effective search space: 2763958944
Effective search space used: 2763958944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)