RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8066
(529 letters)
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 519 bits (1338), Expect = 0.0
Identities = 175/481 (36%), Positives = 260/481 (54%), Gaps = 38/481 (7%)
Query: 63 NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
N ++++L NGL+VA+ N G F +G+ ID+GSR+E G +H L++LAF ST
Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-E 63
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMAR 182
A+A++LE +GG C SSR+ +Y AS + +++++ + V PK +E+E+ +
Sbjct: 64 GRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNY 242
+ ++E++ M+PE +L +++H AAY TLG P +CP I I+ L Y +
Sbjct: 124 LSAEYEIDEVWMKPEL--VLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKF 181
Query: 243 YTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVK 302
YTP V A +GV HE +E KY D Q P I A YTGG
Sbjct: 182 YTPENTVAAFVGVPHEKALELTGKYLGDWQS-----------THPPITKKVAQYTGG--- 227
Query: 303 EECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMY 362
E IP LPEL H+ IG EG+ PD L L+GGGGSFSAGGPGKGMY
Sbjct: 228 -ESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMY 286
Query: 363 TRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMA---- 418
+RLYT+VLN+++++ + A+NH+Y+D+G+F I S P V+V+ +++
Sbjct: 287 SRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKD 346
Query: 419 GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDD 478
+ DE+SRAK QL+S LLMNLE++ ED+GRQVL G + + I IE++ DD
Sbjct: 347 LRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDD 406
Query: 479 IRRVASRLLTSQ----------PSVAARGELINFPSYEDI--HSGIQN----NGVLPRKG 522
I RVA + T +V +G+ +F E++ G+ N P+K
Sbjct: 407 ISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYGLGNSSSSKNDSPKKK 466
Query: 523 R 523
Sbjct: 467 G 467
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B*
1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B*
2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* ...
Length = 439
Score = 501 bits (1292), Expect = e-175
Identities = 113/469 (24%), Positives = 212/469 (45%), Gaps = 33/469 (7%)
Query: 41 PLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQP 100
++ + + V + ++ + T LPNGL +AS + IG+ I +GSRYE
Sbjct: 3 KVAPKVKATEA--PAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENS 60
Query: 101 YPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTV 160
G SH L + +T + I + +E +GG S+R+ Y +D +
Sbjct: 61 NNLGTSHLLRLASSLTTKGA-SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDIL 119
Query: 161 MKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220
M+ L +V P+F E+ + ++ + P+ +++ +HAAAY+ N L
Sbjct: 120 MEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQA--HVIENLHAAAYR-NALANSL 176
Query: 221 LCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKS 280
CP IG + L Y++N++T RM + G+GV H L + A ++ + + +
Sbjct: 177 YCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGL---- 232
Query: 281 LVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPAC 340
+ A Y GG ++E+ L H + E + +
Sbjct: 233 ---------SGAKAKYHGGEIREQNG----------DSLVHAALVAESAAIGSAEANAFS 273
Query: 341 VLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPP 400
VL ++G G G + LY V H F +A+N +Y+D+GLF + +
Sbjct: 274 VLQHVLGAG---PHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQA 330
Query: 401 SNVKNIVDVLVKELVTMA-GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATG 459
++ +++ ++ T+A G + ++ AK +L++ LM++E+ ++VG Q LA G
Sbjct: 331 ASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAG 390
Query: 460 HRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDI 508
PST ++ I+ V + D+ A + ++ + S+AA G L + P +++
Sbjct: 391 SYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 439
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* ...
Length = 446
Score = 490 bits (1264), Expect = e-171
Identities = 124/461 (26%), Positives = 201/461 (43%), Gaps = 25/461 (5%)
Query: 54 YSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLA 113
Y+ + TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LA
Sbjct: 4 YAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLA 63
Query: 114 FNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKF 173
F T +A+ + +E +G + S+R+ Y A + L +++L D+V
Sbjct: 64 FKGTKNR-PGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSL 122
Query: 174 SEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNN 233
+ +I R I EL+ ++ + +HA A++ L P ++ ++
Sbjct: 123 EDSQIEKERDVILQELQENDTSMRD--VVFNYLHATAFQGTPLAQSVEGPSENVRKLSRA 180
Query: 234 TLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTS 292
L YL +Y RMV+A G +EH L++ A K+F + + V S
Sbjct: 181 DLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTY--------DEDAVPTLS 232
Query: 293 SATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSF 352
+TG + L+HV I +EG PD V V N ++G +
Sbjct: 233 PCRFTGSQICHR---------EDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIG---HY 280
Query: 353 SAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVK 412
G + ++ + S +N YADTGL H ++ +++ VL
Sbjct: 281 DCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQG 340
Query: 413 ELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIE 472
+ + + E+ R K L++ L+ +L+ V ED+GR +L G R + + I
Sbjct: 341 QWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIA 400
Query: 473 NVTEDDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSGI 512
V +R V S+ Q P+VA G + P Y I SG+
Sbjct: 401 EVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGM 441
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 470 bits (1211), Expect = e-163
Identities = 136/457 (29%), Positives = 212/457 (46%), Gaps = 26/457 (5%)
Query: 63 NTQVTTLPNGLRVASE-NRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
T+ + LPNGL +A+E S T+G+ +D+GSR E +G +HFLE LAF T
Sbjct: 6 GTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNR- 64
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMA 181
+ I +E IG + +SR+ +Y A + + + IL D++ + I
Sbjct: 65 PQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERE 124
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
R I E E ++ ++ D +H YKD LG L P +I I L Y+
Sbjct: 125 RDVIIRESEEVDKMYDE--VVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITK 182
Query: 242 YYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGI 300
Y RMV+AG G V+HE LV+ A KYF + +S V P + G
Sbjct: 183 NYKGDRMVLAGAGAVDHEKLVQYAQKYFGH----VPKSESPVPLGSP--RGPLPVFCRGE 236
Query: 301 VKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKG 360
+ +H+ I LEGVS PD+ A ++G A G G
Sbjct: 237 RFIK---------ENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGN--WDRAIGTGTN 285
Query: 361 MYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPS--NVKNIVDVLVKELVTMA 418
+ L S +++ +YAD+GL+ ++ + NV+ IV+ ++KE +
Sbjct: 286 SPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIK 345
Query: 419 -GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTED 477
G I E++RAK QL++ LL++L+ A+ ED+GRQV+ TG R P E ++ +T+D
Sbjct: 346 SGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKD 405
Query: 478 DIRRVASRLLTSQP-SVAARGELINFPSYEDIHSGIQ 513
DI A+ L ++P S+ A G P+ I +
Sbjct: 406 DIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A*
2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Length = 431
Score = 455 bits (1173), Expect = e-157
Identities = 87/456 (19%), Positives = 182/456 (39%), Gaps = 41/456 (8%)
Query: 65 QVTTLPNGLRVASE-NRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
+VT L NG+ VA+E N ++GV+ SG+ E PY +GVS+ + + +
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKE------ 55
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPK---FSEEEINM 180
+ K G SRD Y S+ D + L ++ K S
Sbjct: 56 --NSAVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEA 113
Query: 181 ARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLK 240
++++ ++++++ +++ +H+ A+++ L LP S+ + L ++
Sbjct: 114 TKKSVLKQVQDFEDNDHPN-RVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFAN 172
Query: 241 NYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGG 299
N++ + VV G G ++HE LV + + Q + A + G
Sbjct: 173 NHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQT-----------GTKPVLKKKAAFLGS 221
Query: 300 IVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGK 359
V+ + + + +EG P++ A + + G +F +
Sbjct: 222 EVRLR---------DDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQ 272
Query: 360 GMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHAS-APPSNVKNIVDVLVKELVTMA 418
G+ +L N+ + + ++ +Y D+GL+ + + + +++ +K+ +
Sbjct: 273 GI--KLLDNI-QEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLT 329
Query: 419 GPIDADELSRAKKQLQSMLLMNLEARPAV--FEDVGRQVLATGHRKRPSTYIESIENVTE 476
+ E+ RAK L+ L E+ V +G +VL G + + I+ +T
Sbjct: 330 ISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITV 389
Query: 477 DDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSG 511
D++ A + L Q ++A G++ Y I S
Sbjct: 390 KDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSD 425
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 368 bits (946), Expect = e-123
Identities = 98/444 (22%), Positives = 191/444 (43%), Gaps = 37/444 (8%)
Query: 65 QVTTLPNGLRVASENRFGSF-CTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
TL NG+R+ +E +IG+ + +GSRYE +G+SHFLE + F T+ +
Sbjct: 3 NTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQ 62
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQ 183
+ IA+ + IGG + +S++ Y A + L D+ F +EE+ R+
Sbjct: 63 E-IAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERK 121
Query: 184 TIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYY 243
+ E++ P+ ++ D++ +A Y ++LG P L ++ N L Y+ +Y
Sbjct: 122 VVFEEIKMVDDTPDD--IVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFY 179
Query: 244 TPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKE 303
T +V++ G H+ L++ + F +P + +
Sbjct: 180 TGDYVVISVAGNVHDELIDKIKETFSQVKP-----------TTYNYQGEKPMFLPNRIVR 228
Query: 304 ECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYT 363
+ E +H+ +G G+ D D +LN ++GG M +
Sbjct: 229 KKET----------EQAHLCLGYPGLPIGDKDVYALVLLNNVLGGS-----------MSS 267
Query: 364 RLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMA-GPID 422
RL+ ++ + +S +Y+ ++ D+G+ I+A + ++V + + +A +
Sbjct: 268 RLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLT 327
Query: 423 ADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRV 482
EL K+QL+ L+++LE+ + G+ L + IE I V + D+ R+
Sbjct: 328 EKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRL 387
Query: 483 ASRLLTSQPSVAARGELINFPSYE 506
A LL++ PS++ P
Sbjct: 388 AKILLSASPSISLINANGELPKAL 411
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 285 bits (731), Expect = 1e-91
Identities = 90/437 (20%), Positives = 159/437 (36%), Gaps = 45/437 (10%)
Query: 65 QVTTLPNGLRVASEN--RFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
+ L NGLRV +E S +G + +G+R E SGVSHFLE + F +
Sbjct: 3 REAELRNGLRVIAEVVPGARS-VALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDA 61
Query: 123 KDAIAQSLEKIGGICDCLSSRD-TFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMA 181
+ ++ +++G + +S + T Y A ++ + + LRP EE+
Sbjct: 62 LA-VNRAFDRMGAQYNAFTSEEATVYYGAVLP-EFAYDLLGLFAKL-LRPALREEDFQTE 118
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKN 241
+ I E+ YQ RP + + A ++ + LG L SI + + Y +
Sbjct: 119 KLVILEEIARYQDRPGF--MAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRR 176
Query: 242 YYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGI 300
Y P MV+A G V+ + L+ A + ++ + G
Sbjct: 177 RYLPKNMVLAATGRVDFDRLLAEAERLT----------EAWPEGEAERAYPPLTPAFGVE 226
Query: 301 VKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKG 360
+ ++V GV++Q+ P VL L+G GS
Sbjct: 227 ERPYEKA----------RALYLVALFPGVAYQEEARFPGQVLAHLLGEEGS-G------- 268
Query: 361 MYTRLYTNVLNRHH-WMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMA- 418
RL+ + A+ G F + A P+ ++ VL +EL +
Sbjct: 269 ---RLHFAL--VDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGR 323
Query: 419 GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDD 478
+ +E+ RAK L + L+ E +G + L TG ++ VT +
Sbjct: 324 EGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSRE 383
Query: 479 IRRVASRLLTSQPSVAA 495
+ + R +
Sbjct: 384 VNALLERGFLEKGLYYL 400
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 269 bits (689), Expect = 3e-86
Identities = 66/441 (14%), Positives = 128/441 (29%), Gaps = 94/441 (21%)
Query: 73 LRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDA--IAQSL 130
L V++ + T+ V + GSRY GV+H L + F +T+ + A + +
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYATK--DGVAHLLNRFNFQNTN---TRSALKLVRES 55
Query: 131 EKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEIN-MARQTIQFEL 189
E +GG R+ A+ L + L DV+ + F E+ +++
Sbjct: 56 ELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDY 115
Query: 190 ENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMV 249
+ P D ++A + LG P L + ++ + + YT +
Sbjct: 116 AVAEQCP--VKSAEDQLYAITF-RKGLGNPLLYD--GVERVSLQDIKDFADKVYTKENLE 170
Query: 250 VAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIP 308
V+G VE + +L V + + G +
Sbjct: 171 VSGENVVEADLKRFVDESLL----------STLPAGKSLVSKSEPKFFLGEENRVR---- 216
Query: 309 TFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTN 368
S IG+ VL + S +G
Sbjct: 217 -------FIGDSVAAIGIPV---NKASLAQYEVLANYLTSALSELSGL------------ 254
Query: 369 VLNRHHWMFSATAYNHAYADTGLFCIHASA-PPSNVKNIVDVLVKELVTMAGPIDADELS 427
++A + D GLF + + V + + +V +L +LS
Sbjct: 255 ---------ISSAKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVADLKK------GKDLS 299
Query: 428 RAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLL 487
A + + E+ + E
Sbjct: 300 PAINYTKLKNAVQNESVSSPIELNF----------------------------DAVKDFK 331
Query: 488 TSQPSVAARGELINFPSYEDI 508
+ + A G++ N P +++
Sbjct: 332 LGKFNYVAVGDVSNLPYLDEL 352
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 219 bits (559), Expect = 5e-66
Identities = 86/440 (19%), Positives = 147/440 (33%), Gaps = 44/440 (10%)
Query: 65 QVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNST---SEY 120
+ T P+G +V + V D+GS E GV+ L T
Sbjct: 5 EHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSA 64
Query: 121 VNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSG--LDTVMKILGDVVLRPKFSEEEI 178
++++AIA L IG + D ++ +S ++ + IL D++ P F +
Sbjct: 65 LDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVL 124
Query: 179 NMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
R L Q +P ++L AY + G A++ I+ + L ++
Sbjct: 125 ERERARAIAGLREAQTQPG--SILGRRFTELAYGKHPYGHVS--SVATLQKISRDQLVSF 180
Query: 239 LKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYT 297
+ +Y VV +G + A + D +L P A
Sbjct: 181 HRTHYVARTAVVTLVGDITRAEAETIAQQLTAD----LPAGATLPPLPDP------AMPR 230
Query: 298 GGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLN-ILMGGGGSFSAGG 356
+ + P +H+ IG+ + DPDF P V N L GGG F +
Sbjct: 231 ATVERI--ANPA--------TQAHIAIGMPTLKRGDPDFFPLVVGNYAL--GGGGFES-- 276
Query: 357 PGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVT 416
RL + ++ + A +Y GLF I V V L
Sbjct: 277 -------RLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDA 329
Query: 417 MAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVT 475
EL AK L + + L++ + V Y E ++ VT
Sbjct: 330 FLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYLDHYTERVQAVT 389
Query: 476 EDDIRRVASRLLTSQPSVAA 495
+ +R +R + + +
Sbjct: 390 VEQVREAFARHVKRENLITV 409
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus
faecalis V583, STR genomics, PSI-2, protein structure
initiative; 1.95A {Enterococcus faecalis}
Length = 425
Score = 212 bits (543), Expect = 1e-63
Identities = 62/448 (13%), Positives = 139/448 (31%), Gaps = 61/448 (13%)
Query: 63 NTQVTTLPNGLRVASEN--RFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEY 120
N L G+ + ++ + + V ++ +E L L ++ Y
Sbjct: 2 NAMSVQLVKGVNLHVIPTEKYKTV-RLLVRFNTRLNHE---TITKRTLLSSLMETNSLNY 57
Query: 121 VNKDAIAQSLEKI-GGICDCLSSRDTFIYAAS-----------AATSGLDTVMKILGDVV 168
N+ +++ L ++ G S+ + + + L + L +++
Sbjct: 58 PNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEII 117
Query: 169 LRP-----KFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAY-KDNTLGLPKLC 222
P +F E ++ ++ LE+ + + + + + +P
Sbjct: 118 FAPNIQAGQFEAETFQREKENLKAYLESIVEDKQT--YASLALQSVYFNQSEDQKIPSFG 175
Query: 223 PPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSL 281
A++ +L Y + ++ + +G V LV + +
Sbjct: 176 TVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREE------- 228
Query: 282 VLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLE-GVSHQDPDFVPAC 340
+ E + S + + + + D +
Sbjct: 229 --GKAAIFYNQPIRNVIEERTEREVL----------AQSKLNLAYNTDIYYGDSYYFALQ 276
Query: 341 VLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPP 400
V N + GG S +L+ NV + H + A++ G +
Sbjct: 277 VFNGIFGGFPH-S----------KLFMNVREKEHLAYYASSS--IDTFRGFMTVQTGIDG 323
Query: 401 SNVKNIVDVLVKELVTMA-GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATG 459
N ++ ++ EL + G I E+ + K L++ ++ L+ A E L
Sbjct: 324 KNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQ 383
Query: 460 HRKRPSTYIESIENVTEDDIRRVASRLL 487
+I I VT +I+ VA RL
Sbjct: 384 TMLTAEEWIARINAVTIPEIQEVAKRLE 411
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 196 bits (500), Expect = 3e-57
Identities = 65/431 (15%), Positives = 138/431 (32%), Gaps = 41/431 (9%)
Query: 63 NTQVTTLPNGLRV-ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
N Q + G +V E R + +I +GS + GV+ + +
Sbjct: 13 NVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGK- 70
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSG--LDTVMKILGDVVLRPKFSEEEIN 179
+ AIAQ E +G + +D + + + ++ + +K+ +VV +P F + +
Sbjct: 71 DVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLA 130
Query: 180 MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
+ + E + P L + Y + SI I L +
Sbjct: 131 RIKNQMLAGFEYQKQNPG--KLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFH 188
Query: 240 KNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298
Y +V+A +G + A + + +L ++P
Sbjct: 189 AKAYAAGNVVIALVGDLSRSDAEAIAAQVSAA----LPKGPALAKIEQPAEPK------A 238
Query: 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLN-ILMGGGGSFSAGGP 357
I P+ + +++ G+ DPD+ + N IL GGG F
Sbjct: 239 SIGHI--EFPS--------SQTSLMLAQLGIDRDDPDYAAVSLGNQIL--GGGGFGT--- 283
Query: 358 GKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTM 417
RL + V + + + G F I+ + + ++
Sbjct: 284 ------RLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEY 337
Query: 418 A-GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTE 476
EL AK++L ++ + + +G ++ + +T
Sbjct: 338 LKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTV 397
Query: 477 DDIRRVASRLL 487
+ ++ ++ L
Sbjct: 398 EQVKAAMNKHL 408
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 124 bits (313), Expect = 7e-31
Identities = 65/456 (14%), Positives = 138/456 (30%), Gaps = 60/456 (13%)
Query: 61 DRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNST 117
D Q L NG A+ R + +I+++GS E G +H L +LA S+
Sbjct: 23 DPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSS 82
Query: 118 SEYVNKDAIA---QSLEKIGGICDCLSSRDTFIYAASAATSG---LDTVMKILGDVVLRP 171
+ + + Q ++ + ++S D +Y+ S + L + L D
Sbjct: 83 ASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNL 142
Query: 172 KFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVIN 231
SE+ +N A T + + QE + ++ + G P V
Sbjct: 143 AVSEQTVNAALNTATDPIATFPQNI-QEPWWRYRLKGSSLIGHDPGQP---------VTQ 192
Query: 232 N---NTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKP 287
L + + +YTP M + +G V+ ++ +K F + ++ K
Sbjct: 193 PVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSE-----LKGKRTAPAAVA 247
Query: 288 VIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMG 347
+ + ++ + LS ++ QD + + L
Sbjct: 248 TLAPLPPEPVSLMNEQ----------AAQDTLS-LMWDTPWHPIQDSMALSRYWRSDLAR 296
Query: 348 GGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIV 407
++ + + + IH + P N+ +
Sbjct: 297 E-----------ALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTANM 345
Query: 408 DVLVKELVTMA-GPIDADELSRAKKQLQSMLLMNLEARPAV-FEDVGRQVLATGHRKRPS 465
+ +EL + + E Q L + + Q L +
Sbjct: 346 TFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVD 405
Query: 466 TYIES--------IENVTEDDIRRVASRLLTSQPSV 493
E + +T ++ R + L+ ++
Sbjct: 406 IAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTL 441
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 121 bits (306), Expect = 4e-30
Identities = 86/442 (19%), Positives = 157/442 (35%), Gaps = 37/442 (8%)
Query: 63 NTQVTTLPNGLRV-ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
+T TTLPNGL+V E+ V GS E +GV+H LE + F T + V
Sbjct: 6 STFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGT-KDV 64
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMA 181
++ + +GG + ++RD Y +S L VM + D + +E
Sbjct: 65 GPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKE 124
Query: 182 RQTIQFE-LENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLK 240
Q I E +P + + AA+Y + +P + I + + + K
Sbjct: 125 IQVIAEERRWRTDDKPRS--KAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYK 182
Query: 241 NYYTPTRM--VVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298
+Y P VV G VEHEA+ A + + + + +
Sbjct: 183 RWYGPNNATVVVVG-DVEHEAVFRLAEQTYGK-----LARVEAPARKQQGEPQQAGVRR- 235
Query: 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPG 358
VK +P A +P + + D +L ++ G
Sbjct: 236 VTVKAPAELPYLALAWHVPAIVD--------LDKSRDAYALEILAAVLDGYDG------- 280
Query: 359 KGMYTRLYTNVLNRHHWMFSATAYNHAYA--DTGLFCIHASAPP-SNVKNIVDVLVKELV 415
R+ ++ + SA A + + GLF + + + L ++
Sbjct: 281 ----ARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVR 336
Query: 416 TMA-GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENV 474
+A + ELSR K Q+ + + ++ +G + + + + + +V
Sbjct: 337 DIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSV 396
Query: 475 TEDDIRRVASRLLTSQPSVAAR 496
T +++ A+RLLT A
Sbjct: 397 TAAEVKAAAARLLTDDTLTVAN 418
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 95.3 bits (236), Expect = 1e-20
Identities = 53/366 (14%), Positives = 110/366 (30%), Gaps = 53/366 (14%)
Query: 61 DRNTQVTTLPNGLRV-ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSE 119
+R Q L NG+ V + +++ GS + G++H+LE ++ + +
Sbjct: 18 NRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKK 77
Query: 120 YVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEIN 179
Y D++A+ L+ GG + ++ + L + L D + P ++
Sbjct: 78 YPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE 137
Query: 180 MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTL---- 235
R + E M ++ + M + A P + N TL
Sbjct: 138 RERNAVNAE---LTMARTRDGMRMAQVSAETINPAH-------PGSKFSGGNLETLSDKP 187
Query: 236 --------FTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDK 286
+ + YY+ M L + A F + +K +
Sbjct: 188 GNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGR-----VPNK-----ES 237
Query: 287 PVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILM 346
+ + T + L V ++ S + ++ L+
Sbjct: 238 KKPEITVPVVTDAQKGIIIHYVPALPRKVL----RVEFRIDNNSAKFRS-KTDELITYLI 292
Query: 347 GGGGSFSAGGPGKGMYTRLYTNVLNRHHW--MFSATAYNHAYADTGLFCIHASAPPSNVK 404
G ++ L + SA + ++G+ I AS +
Sbjct: 293 GNRSP------------GTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLA 340
Query: 405 NIVDVL 410
N V+
Sbjct: 341 NRDQVV 346
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 82.6 bits (203), Expect = 1e-16
Identities = 59/363 (16%), Positives = 109/363 (30%), Gaps = 43/363 (11%)
Query: 60 NDRNTQVTTLPNGLRV-ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTS 118
+ R + L NG++V + + + + GS + P +G+SHFL+ + F T
Sbjct: 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTK 90
Query: 119 EYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEI 178
+Y ++ +Q L + G + +S + Y + L+ + L P F E
Sbjct: 91 KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAK 150
Query: 179 NMARQTIQFELENYQMRPEQETLLMDMIHAAAYKD---------NTLGLPKLCPPASIGV 229
+ + E E + L + A N L P G+
Sbjct: 151 DREVNAVDSEHE--KNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETR--PNQEGI 206
Query: 230 INNNTLFTYLKNYYTPTRMVVAGIGVE-HEALVEAANKYFVDKQPVWIQDKSLVLTDKPV 288
L + YY+ M V +G E + L K F V ++ L +
Sbjct: 207 DVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLF---SEVENKNVPLPEFPEHP 263
Query: 289 IDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGG 348
+E +V + + P L L+G
Sbjct: 264 FQ-----------EEHLKQLYKIVPIKDIRNLYVTFPIPDLQK-YYKSNPGHYLGHLIGH 311
Query: 349 GGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATA-YNHAYADTGLFCIHASAPPSNVKNIV 407
G L + L W+ + F I+ + ++
Sbjct: 312 EGP-----------GSLLSE-LKSKGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVE 359
Query: 408 DVL 410
D++
Sbjct: 360 DII 362
Score = 49.8 bits (118), Expect = 2e-06
Identities = 51/491 (10%), Positives = 133/491 (27%), Gaps = 55/491 (11%)
Query: 19 NHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASE 78
Q + + K P + P LP D L +
Sbjct: 482 AKWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSK------LWFKQD 535
Query: 79 NRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGIC 137
++F + S Y P S +++ +L +S +EY A + E G
Sbjct: 536 DKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEY------AYAAELAGLSY 589
Query: 138 DCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPE 197
D ++ + ++K + + + + E + ++ L N++
Sbjct: 590 DLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQP 649
Query: 198 QETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG--V 255
+ M + + ++ + L ++ + + G
Sbjct: 650 HQ-HAMYYLRLLMTEVAWTKDELK---EALADVTLPRLKAFIPQLLSRLHIEALLHGNIT 705
Query: 256 EHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSG 315
+ AL + D K L+ + + + + +
Sbjct: 706 KQAAL--GIMQMVEDTLIEHAHTKPLLPSQLAAYRE--------VQLPDRGWFVYQQRNE 755
Query: 316 LPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHW 375
+ S + I + + + + ++ + + +
Sbjct: 756 VHNNSGIEIYYQTDMQSTSENMFLELFAQIISE---------------PAFNTLRTKEQL 800
Query: 376 MFSATAYNHAYADTG--LFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQL 433
+ + F I + PP +++ V+ + + + + + + L
Sbjct: 801 GYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQAL 860
Query: 434 QSMLL---MNLEARPAVF-EDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS 489
L L A A + ++ Q + ++ +T+ DI + +L
Sbjct: 861 AIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNT---EVAYLKTLTKADIIKFYKEMLA- 916
Query: 490 QPSVAARGELI 500
R ++
Sbjct: 917 -VDAPRRHKVS 926
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc
genomics, PSI-2, protein structure initiative, midwest
CENT structural genomics; 2.15A {Bordetella pertussis}
PDB: 3ivl_A
Length = 197
Score = 72.0 bits (177), Expect = 8e-15
Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 15/178 (8%)
Query: 318 ELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMF 377
V + PDFV + ++ S +RLY L
Sbjct: 23 GTPLVAAMYHLPAAGSPDFVGLDLAATILADTPS-----------SRLYHA-LVPTKLAS 70
Query: 378 SATAYNHAYADTGLFCIHASAPP-SNVKNIVDVLVKELVTMA-GPIDADELSRAKKQLQS 435
+ D GL A P + + L L +++ P +EL RA+ + +
Sbjct: 71 GVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLT 130
Query: 436 MLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSV 493
V + +A+G + + + DD++R A L
Sbjct: 131 AWQQTYADPEKVGVALSEA-IASGDWRLFFLQRDRVREAKLDDVQRAAVAYLVRSNRT 187
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 73.0 bits (178), Expect = 1e-13
Identities = 54/399 (13%), Positives = 107/399 (26%), Gaps = 47/399 (11%)
Query: 70 PNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQS 129
G V S + GV R +G+ H L+ + +Y K+ +
Sbjct: 44 KTGCEVMSVSNEDENKVFGV----VFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVEL 99
Query: 130 LEKIGGICD--CLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQF 187
L+ T AS T ++ + D V PK ++ ++ +
Sbjct: 100 LKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHY 159
Query: 188 ELENYQMRPEQ---------------ETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINN 232
EL + + +L + A +NT G+ P I +
Sbjct: 160 ELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTF 219
Query: 233 NTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDT 291
+ + YY P+ + G + + ++Y + + S + K
Sbjct: 220 EEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKFQKL---- 275
Query: 292 SSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPAC--VLNILMGGG 349
V+ P + V L D A + ++++G
Sbjct: 276 -----FSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTP 330
Query: 350 GSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDV 409
S L +L ++ F I V+
Sbjct: 331 AS------------PLRKILLESGLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEE 378
Query: 410 LVKELVT--MAGPIDADELSRAKKQLQSMLLMNLEARPA 446
L+ + + D D + + ++ L N
Sbjct: 379 LIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFP 417
Score = 51.4 bits (122), Expect = 6e-07
Identities = 58/474 (12%), Positives = 134/474 (28%), Gaps = 62/474 (13%)
Query: 38 QQPPLSTPLPGLPKVHYSCV-KDNDRNTQVTTLPNGLRVASENRFGS-FCTIGVIIDSGS 95
+ P L +P ++ + K+ NG++V + F + V+ D GS
Sbjct: 526 ETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGS 585
Query: 96 --RYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIG------GICDCLSSRDTFI 147
P L ++ + I + I + I
Sbjct: 586 LKHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKII 645
Query: 148 YAASAATSGLDTVMKILGDVVLRPKFSEEE-----INMARQTIQFELENYQMRPEQETLL 202
+ D + ++ ++ +F++++ ++ +R ++ L +
Sbjct: 646 VRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMD 705
Query: 203 MDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL-------KNYYTPTRMVVAGIG- 254
+ A + GL L ++ + ++ +V
Sbjct: 706 AMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTAD 765
Query: 255 VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTS 314
+ VE + F+D L + P + + E IPT
Sbjct: 766 GKSLTNVEKSVAKFLDL-----------LPENPSGGLVTWDGRLPLRNEAIVIPT----- 809
Query: 315 GLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHH 374
++++V S A V++ + L+ V R
Sbjct: 810 ---QVNYVGKAGNIYSTGYELDGSAYVISKHISNT--------------WLWDRV--RVS 850
Query: 375 WMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKEL-VTMAGPIDADELSRAKKQL 433
+ + + +G+F + P N+ +D+ +D + L++A
Sbjct: 851 -GGAYGGFCDFDSHSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGT 908
Query: 434 QSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLL 487
+ + + R +L +R E I + D + A +
Sbjct: 909 IGDVDSYQLPDAKGYSSLLRHLLGVTDEER-QRKREEILTTSLKDFKDFAQAID 961
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 66/441 (14%), Positives = 117/441 (26%), Gaps = 156/441 (35%)
Query: 143 RDTFIYAASAATSGLDT----------VMKILGDVVLRPKFSEEEINMARQTIQFELENY 192
++ F T G V K LG V ++ Q + L +
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS--SLVEPSKVGQFDQVLNLCLTEF 91
Query: 193 QMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAG 252
E L + IHA A KL ++ L +KNY T M
Sbjct: 92 ----ENCYLEGNDIHALAA--------KLLQENDTTLVKTKEL---IKNYITARIMAKRP 136
Query: 253 IGVEHE-ALVEAANK-----------------YFVDKQPVWIQDKSLVLTDKPVIDTSSA 294
+ AL A + YF + + ++ LV +I S+
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV---GDLIKFSAE 193
Query: 295 TYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSA 354
T L + D
Sbjct: 194 T------------------------------LSELIRTTLDA------------------ 205
Query: 355 GGPGKGMYTRLYTNVLNRHHWMFSA-TAYNHAYADT--------GL--------FCIHAS 397
+++T LN W+ + + Y + G+
Sbjct: 206 --------EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 398 APPSNVKNIVD---VLVKELVT---MAGPIDADELSR-AKKQLQSMLLMNLEARPAVFED 450
P +++ + + LVT +A + +K + + + + E
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY----EA 313
Query: 451 VGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHS 510
L PS +S+EN E V S +L S+ + E +
Sbjct: 314 YPNTSLP------PSILEDSLEN-NEG----VPSPML----SI--SN-----LTQEQVQD 351
Query: 511 GI-QNNGVLPRKGRIS-SVIN 529
+ + N LP ++ S++N
Sbjct: 352 YVNKTNSHLPAGKQVEISLVN 372
Score = 42.3 bits (99), Expect = 5e-04
Identities = 42/233 (18%), Positives = 65/233 (27%), Gaps = 74/233 (31%)
Query: 56 CVKDN-DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAF 114
V +N T G R+ EN I+D + E+ + ++ F
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIR-ENYSAMIFE--TIVDGKLKTEKIFKE-INEHSTSYTF 1719
Query: 115 NSTSEYVNKDAIAQ------------SLEKIGGICDCLSSRDTFI------YAASAATSG 156
S ++ Q L+ G I + TF YAA A+ +
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI----PADATFAGHSLGEYAALASLAD 1775
Query: 157 LDTVMKILGDVV--LRPKFSEEEINMAR-QTIQFELENYQMRPEQETLLMDMIHAAAYKD 213
VM + +V + R T+Q + R E MI A
Sbjct: 1776 ---VMS-IESLVEVVF----------YRGMTMQVAVP----RDELGRSNYGMI---A--- 1811
Query: 214 NTLGLPKLCPPASIGV-INNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAAN 265
P + + L + VV +G LVE N
Sbjct: 1812 --------INPGRVAASFSQEAL-----------QYVVERVGKRTGWLVEIVN 1845
Score = 41.2 bits (96), Expect = 0.001
Identities = 60/382 (15%), Positives = 100/382 (26%), Gaps = 164/382 (42%)
Query: 29 QAKPPPPSFQQPPLSTPLPGLPK-VHY--SCVKDN-------DRNTQVTTLPNGLRVA-- 76
P P+S PL G+ + HY + T GL A
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 77 -----SENRF----GSFCTIGVIIDSGSRYEQPYP------------------------- 102
S F T+ I G R + YP
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 103 -SGVSH-FLEKLAFNSTSEYVNK-----DAIAQSLEKIGGICDCLSSRDTFI---YAAS- 151
S ++ ++ N + SL ++ + S
Sbjct: 341 ISNLTQEQVQDYV-----NKTNSHLPAGKQVEISL---------VNGAKNLVVSGPPQSL 386
Query: 152 ----------AATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFEL-------ENYQM 194
A SGLD R FSE ++ + + +F L + +
Sbjct: 387 YGLNLTLRKAKAPSGLDQS---------RIPFSERKL---KFSNRF-LPVASPFHSHL-L 432
Query: 195 RPEQETLLMDMI-HAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPT----RMV 249
P + + D++ + ++ + +P V Y T R++
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIP---------V------------YDTFDGSDLRVL 471
Query: 250 VAGIGVEHEALVEAANKYFVDKQPV-WIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIP 308
I E +V+ + + PV W AT+ I+
Sbjct: 472 SGSIS---ERIVDC-----IIRLPVKW-----------ETTTQFKATH---IL------- 502
Query: 309 TF--AGTSGLPELSHVVIGLEG 328
F G SGL L+H +G
Sbjct: 503 DFGPGGASGLGVLTHRN--KDG 522
Score = 36.6 bits (84), Expect = 0.027
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 121 VNKDAIAQSL--EKIGGICDCLSSRDTFI------------YAASAATSGLDTVMKILGD 166
+N +A S E + + + + R ++ Y A+ LDTV +L
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 167 VVLRPKFSEEEINMARQTIQFELE 190
+ L+ I++ LE
Sbjct: 1872 IKLQK------IDIIELQKSLSLE 1889
Score = 33.9 bits (77), Expect = 0.18
Identities = 45/224 (20%), Positives = 66/224 (29%), Gaps = 83/224 (37%)
Query: 359 KGMYTRLYTN------VLNR--HHWM----FSATA--YNHAYADTGLFC------IHASA 398
+GM LY V NR +H+ FS N+ T F I +
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 399 PPSNVKNIVD------VLVKEL------VTMAGPIDADELSRAKKQLQ-SMLLMNLEARP 445
+ IVD + KE+ T LS + Q ++ LM
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFT-QPALTLMEK---- 1741
Query: 446 AVFEDV-------GRQVLATGHRKRPSTYIESI-E--------NV--TEDDIRRVASRLL 487
A FED+ A GH S+ E +V E +
Sbjct: 1742 AAFEDLKSKGLIPADATFA-GH---------SLGEYAALASLADVMSIES-----LVEV- 1785
Query: 488 TSQPSVAARGELINF--PSYEDIHSGIQNNGVLPRKGRISSVIN 529
V RG + P E S + P GR+++ +
Sbjct: 1786 -----VFYRGMTMQVAVPRDELGRSNYGMIAINP--GRVAASFS 1822
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 8e-09
Identities = 67/505 (13%), Positives = 122/505 (24%), Gaps = 177/505 (35%)
Query: 107 HFLEKLAFN-STSEYVNKDAIAQSLEKIGGICDC----------LSSRDT-FIYAASAAT 154
H + F +Y KD ++ + DC LS + I + A
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 155 SGLD------------TVMKILGDVV------LRPKFSEEEINMARQTIQFE-----LEN 191
SG V K + +V+ L E+ + T + L N
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 192 -----------------------YQMRPEQETLLMDM-------IHAAAYKDN------- 214
++RP + L+ + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 215 ------TLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYF 268
L P ++ + L + +T + I + ++ +
Sbjct: 182 FKIFWLNLK--NCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 269 VDKQ-P--------VW---------IQDKSLVLT-DKPVIDTSSATYTGGIVKEECNIPT 309
K V + K L+ T K V D SA T I + + T
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-HSMT 297
Query: 310 FAGTSGLPELSHVVIGLEGVSHQDPDFVP--ACVLNILMGGGGSFSAGGPGKGMYTRLYT 367
L + QD +P N +
Sbjct: 298 LTPDEVKSLLLKYL----DCRPQD---LPREVLTTNPRR------------LSIIAESIR 338
Query: 368 NVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELS 427
+ L W + H D + I++ + L + E
Sbjct: 339 DGLAT--WDN----WKHVNCD-------------KLTTIIESSLNVL-------EPAEYR 372
Query: 428 RAKKQLQSMLLMNLEARPAVF-EDVGRQVLATGHRKRPSTYIESI-ENVTEDDIRRVASR 485
+ +L +VF P+ + I +V + D+ V ++
Sbjct: 373 KMFDRL------------SVFPPSA----------HIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 486 LLTSQPSVAARGELINFPSYEDIHS 510
L S+ + S I S
Sbjct: 411 LHKY--SLVEKQ---PKESTISIPS 430
Score = 40.2 bits (93), Expect = 0.002
Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 38/162 (23%)
Query: 371 NRHHWM-FSATAYNHAYADTGLFCIHASAPP----SNVKNIVDVLVKELVTMAGPIDADE 425
+ HH M F + + Y D + + K++ D+ K +++ + D
Sbjct: 2 HHHHHMDFETGEHQYQYKDI----LSVFEDAFVDNFDCKDVQDMP-KSILSKE---EIDH 53
Query: 426 LSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASR 485
+ +K + L + T K+ + +E V + + + S
Sbjct: 54 IIMSKDAVSGTLRL----------------FWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 486 LLTS--QPSVAARGELINFPSYEDIHSGIQNNGVLPRKGRIS 525
+ T QPS + Y + + N+ + K +S
Sbjct: 98 IKTEQRQPS-------MMTRMYIEQRDRLYNDNQVFAKYNVS 132
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 53.9 bits (128), Expect = 1e-07
Identities = 28/207 (13%), Positives = 55/207 (26%), Gaps = 32/207 (15%)
Query: 94 GSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK-IGGICDCLSSRD-TFIYAAS 151
+ G+ H LE + + Y K++I + + + + D T A S
Sbjct: 116 YVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGS 175
Query: 152 AATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQ------------- 198
+M + D V +P E + + +E+E + +
Sbjct: 176 MNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVS 235
Query: 199 ----------------ETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNY 242
L + DN P I + +
Sbjct: 236 FNGIVYNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKN 295
Query: 243 YTPTRMVVAGIG-VEHEALVEAANKYF 268
Y P ++ V L+ ++Y
Sbjct: 296 YNPKKVKVFFFSKNNPTELLNFVDQYL 322
Score = 33.9 bits (76), Expect = 0.16
Identities = 31/378 (8%), Positives = 85/378 (22%), Gaps = 51/378 (13%)
Query: 136 ICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEE-----INMARQTIQFELE 190
+ D +++ F + + + I + V FS ++ + ++
Sbjct: 805 VTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFS 864
Query: 191 NYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASI---------GVINNNTLFTYLKN 241
+ + + + G + N L
Sbjct: 865 EKGYAILMKYVKAHLNSKHYAHNIIYGYENYLKLQEQLELAENDFKTLENI--LVRIRNK 922
Query: 242 YYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGI 300
+ ++V+ + + + + ++ + D
Sbjct: 923 IFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNE 982
Query: 301 VKEECNIPTFAGTSGL-----PELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAG 355
+ + ++ V + + V+ +
Sbjct: 983 EIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNSY----- 1037
Query: 356 GPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGL--FCIHASAPPSNVKNIVDVLVKE 413
L+ V R A G F K
Sbjct: 1038 ---------LWDTV--RGLNG--AYGVFADIEYDGSVVFLSARDPNLEKTLATFRESAKG 1084
Query: 414 LVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPS----TYIE 469
L MA + ++L R + ++ ++ R ++ + + +
Sbjct: 1085 LRKMADTMTENDLLRYI--INTIGTIDKPRRGI---ELSKLSFLRLISNESEQDRVEFRK 1139
Query: 470 SIENVTEDDIRRVASRLL 487
I N ++D + A L
Sbjct: 1140 RIMNTKKEDFYKFADLLE 1157
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog,
iodide ION S phasing, structural genomics; HET: PG4 PGE;
1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Length = 107
Score = 30.1 bits (68), Expect = 0.58
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 449 EDVGRQVLATGHRKRPSTYIE---SIENVT-----EDDIRRVASRL 486
+ +L + + P T + ++ + ++I +VA+RL
Sbjct: 50 VRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARL 95
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 30.6 bits (70), Expect = 0.98
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGS 95
R+A +F +F +G+ D G+
Sbjct: 125 RRIALRRAKFLENFHKMGISPDLGA 149
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 30.2 bits (69), Expect = 1.5
Identities = 5/25 (20%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGS 95
+ + +++ +F ++ TIG+ D+ +
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDTAT 148
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 30.2 bits (69), Expect = 1.6
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGSRY 97
R+ SE F +F +G++ D+G Y
Sbjct: 118 FRLLSEKASFAPAFIHVGLVPDAGHLY 144
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 29.8 bits (68), Expect = 2.0
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGSRY 97
LR+A+ F +F IG++ DSG +
Sbjct: 115 LRLAAVGASFTTAFVRIGLVPDSGLSF 141
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGSRY 97
L VA+ F +F +G++ D G+
Sbjct: 116 LVVAAPASYFQLAFTRVGLMPDGGASA 142
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 29.7 bits (66), Expect = 2.2
Identities = 14/97 (14%), Positives = 24/97 (24%), Gaps = 7/97 (7%)
Query: 3 GRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHY--SCVKDN 60
R F + + KG I + + TPL + Y
Sbjct: 179 QRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIR 238
Query: 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRY 97
V L + G G +I + + +
Sbjct: 239 INQHSVFPLNKISSTIVGSTSG-----GTMISTSTPH 270
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 29.4 bits (67), Expect = 2.5
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGS 95
L A F F ++G+ + G+
Sbjct: 123 LVFADNTALFQIPFVSLGLSPEGGA 147
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 29.4 bits (67), Expect = 2.5
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGS 95
L S R F ++GV ++ S
Sbjct: 123 LAFMSSTARLKCPFTSLGVAPEAAS 147
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A
{Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB:
1qzr_A*
Length = 418
Score = 29.5 bits (67), Expect = 2.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 461 RKRPSTYIESIENVTED 477
KRP TYI S+E +
Sbjct: 27 LKRPDTYIGSVETQEQL 43
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond,
electron transport, endopl reticulum, FAD, flavoprotein,
glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae}
PDB: 1rp4_A* 1rq1_A* 3nvj_A*
Length = 388
Score = 29.6 bits (66), Expect = 2.8
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 106 SHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILG 165
F E L F + KD + + I DC+ ++ T+G T +KIL
Sbjct: 277 KIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQCDRCRLW-GKIQTTGYATALKIL- 334
Query: 166 DVVLRPKFSEEEI-NMARQTIQFELENYQM 194
F + +Q I +L Y++
Sbjct: 335 -------FEINDADEFTKQHIVGKLTKYEL 357
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL
nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo
sapiens} PDB: 1zxn_A*
Length = 400
Score = 28.8 bits (65), Expect = 4.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 461 RKRPSTYIESIENVTED 477
RP TYI S+E VT+
Sbjct: 16 LLRPDTYIGSVELVTQQ 32
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding
protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP:
a.183.1.1
Length = 258
Score = 28.6 bits (63), Expect = 4.8
Identities = 12/102 (11%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 403 VKNIVDVLVKELVTMAGPIDADEL---SRAKKQLQSMLLMNLE---ARPAVFEDVGRQVL 456
++ +++ + + + G A +L + + ++L + ++ A ++++ R
Sbjct: 131 IEEVMEKIAPNMTELVGAKVAAKLLERAGSMERLVRLPASKIQVIGAEKSLYKAFARMKK 190
Query: 457 ATGHRKRPSTYIESIENV--TEDDIRRVASRLLTSQPSVAAR 496
+ I + R +R L ++ ++AA+
Sbjct: 191 GKKAKIPKHGIIFLHPFIRTLPKAKRGKMARFLAAKLAIAAK 232
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in
diseases, isomerase, center for structural genomics of
INFE diseases, csgid; 2.35A {Vibrio cholerae}
Length = 396
Score = 28.7 bits (65), Expect = 5.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 421 IDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR 461
IDA R K L LE++ + + + +L TGHR
Sbjct: 199 IDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHR 239
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 28.0 bits (63), Expect = 7.0
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGSRY 97
AS+ F F +G + S Y
Sbjct: 145 AVYASDRATFHTPFSHLGQSPEGCSSY 171
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics,
isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP:
c.87.1.3 PDB: 1f6d_A*
Length = 384
Score = 28.2 bits (64), Expect = 7.5
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 421 IDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR 461
IDA R + L L A + + +L TGHR
Sbjct: 174 IDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHR 214
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 27.6 bits (62), Expect = 9.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 139 CLSSRDTFIYAASAATSGLDTVMKILGDVVLRP 171
CL F+YA+SAAT G T I +P
Sbjct: 151 CLEREIPFLYASSAATYGGRTSDFIESREYEKP 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,113,158
Number of extensions: 500577
Number of successful extensions: 1297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1183
Number of HSP's successfully gapped: 52
Length of query: 529
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 431
Effective length of database: 3,965,535
Effective search space: 1709145585
Effective search space used: 1709145585
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)