RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8066
(529 letters)
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 237
Score = 158 bits (401), Expect = 7e-46
Identities = 93/229 (40%), Positives = 128/229 (55%), Gaps = 18/229 (7%)
Query: 294 ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFS 353
A YTGG E IP LPEL H+ IG EG+ PD L L+GGGGSFS
Sbjct: 2 AQYTGG----ESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFS 57
Query: 354 AGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVK- 412
AGGPGKGMY+RLYT+VLN+++++ + A+NH+Y+D+G+F I S P V+V+ +
Sbjct: 58 AGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQ 117
Query: 413 ---ELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIE 469
+ DE+SRAK QL+S LLMNLE++ ED+GRQVL G + + I
Sbjct: 118 MYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMIS 177
Query: 470 SIENVTEDDIRRVASRLLTSQPSVAARG----------ELINFPSYEDI 508
IE++ DDI RVA + T + A G + +F E++
Sbjct: 178 KIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENV 226
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 209
Score = 138 bits (348), Expect = 1e-38
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 4/195 (2%)
Query: 318 ELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMF 377
L+HV I +EG PD V V N ++G + G + ++ +
Sbjct: 16 PLAHVAIAVEGPGWAHPDNVALQVANAIIGH---YDCTYGGGAHLSSPLASIAATNKLCQ 72
Query: 378 SATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSML 437
S +N YADTGL H ++ +++ VL + + + E+ R K L++ L
Sbjct: 73 SFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNAL 132
Query: 438 LMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQ-PSVAAR 496
+ +L+ V ED+GR +L G R + + I V +R V S+ Q P+VA
Sbjct: 133 VSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGF 192
Query: 497 GELINFPSYEDIHSG 511
G + P Y I SG
Sbjct: 193 GPIEQLPDYNRIRSG 207
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 217
Score = 138 bits (347), Expect = 2e-38
Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 318 ELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMF 377
+H+ I LEGVS PD+ A ++G G G + L
Sbjct: 19 PTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAI--GTGTNSPSPLAVAASQNGSLAN 76
Query: 378 SATAYNHAYADTGLFCIHASAP--PSNVKNIVDVLVKEL-VTMAGPIDADELSRAKKQLQ 434
S +++ +YAD+GL+ ++ NV+ IV+ ++KE +G I E++RAK QL+
Sbjct: 77 SYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLK 136
Query: 435 SMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQP-SV 493
+ LL++L+ A+ ED+GRQV+ TG R P E ++ +T+DDI A+ L ++P S+
Sbjct: 137 AALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSM 196
Query: 494 AARGELINFPSYEDIHSGIQ 513
A G P+ I +
Sbjct: 197 VALGNTSTVPNVSYIEEKLN 216
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 137 bits (345), Expect = 2e-38
Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 14/216 (6%)
Query: 294 ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFS 353
A Y GG ++E+ L H + E + + VL ++G G
Sbjct: 2 AKYHGGEIREQNGD----------SLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVK 51
Query: 354 AGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKE 413
G + LY V H F +A+N +Y+D+GLF + + ++ +++ +
Sbjct: 52 RGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQ 108
Query: 414 LVTMA-GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIE 472
+ T+A G + ++ AK +L++ LM++E+ ++VG Q LA G PST ++ I+
Sbjct: 109 VKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQID 168
Query: 473 NVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDI 508
V + D+ A + ++ + S+AA G L + P +++
Sbjct: 169 AVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 204
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 218
Score = 131 bits (330), Expect = 5e-36
Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 16/222 (7%)
Query: 294 ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFS 353
A + G V+ LP + + + +EG P++ A + + G +F
Sbjct: 3 AAFLGSEVRLR--------DDTLP-KAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFE 53
Query: 354 AGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHA-SAPPSNVKNIVDVLVK 412
+G+ +L N+ + + ++ +Y D+GL+ + + + +++ +K
Sbjct: 54 PASRLQGI--KLLDNI-QEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLK 110
Query: 413 ELVTMAGPIDADELSRAKKQLQSMLLMNLE--ARPAVFEDVGRQVLATGHRKRPSTYIES 470
+ + + E+ RAK L+ L E +G +VL G + +
Sbjct: 111 QWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKK 170
Query: 471 IENVTEDDIRRVASRLLTSQ-PSVAARGELINFPSYEDIHSG 511
I+ +T D++ A + L Q ++A G++ Y I S
Sbjct: 171 IDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSD 212
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 121 bits (305), Expect = 2e-32
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 4/208 (1%)
Query: 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEY 120
++ + T LPNGL +AS + IG+ I +GSRYE G SH L + +T
Sbjct: 5 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA 64
Query: 121 VNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINM 180
+ I + +E +GG S+R+ Y +D +M+ L +V P+F E+
Sbjct: 65 SSFK-ITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 123
Query: 181 ARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLK 240
+ ++ + P+ + AA N L CP IG + L Y++
Sbjct: 124 LQPQLRIDKAVALQNPQAH---VIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQ 180
Query: 241 NYYTPTRMVVAGIGVEHEALVEAANKYF 268
N++T RM + G+GV H L + A ++
Sbjct: 181 NHFTSARMALIGLGVSHPVLKQVAEQFL 208
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 220
Score = 110 bits (274), Expect = 3e-28
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 3/208 (1%)
Query: 63 NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
N ++++L NGL+VA+ N G F +G+ ID+GSR+E G +H L++LAF ST
Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG 64
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMAR 182
+ +A++LE +GG C SSR+ +Y AS + +++++ + V PK +E+E+ +
Sbjct: 65 RA-MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNY 242
+ ++E++ M+PE +++H AAY TLG P +CP I I+ L Y +
Sbjct: 124 LSAEYEIDEVWMKPELVL--PELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKF 181
Query: 243 YTPTRMVVAGIGVEHEALVEAANKYFVD 270
YTP V A +GV HE +E KY D
Sbjct: 182 YTPENTVAAFVGVPHEKALELTGKYLGD 209
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 107 bits (266), Expect = 3e-27
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 14/214 (6%)
Query: 65 QVTTLPNGLRVAS-ENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
+VT L NG+ VA+ N ++GV+ SG+ E PY +GVS+ + + + + V
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAVAA 61
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPK---FSEEEINM 180
G SRD Y S+ D + L ++ K S
Sbjct: 62 K--------EGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEA 113
Query: 181 ARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLK 240
++++ ++++++ +++ +H+ A+++ L LP S+ + L ++
Sbjct: 114 TKKSVLKQVQDFEDNDHPN-RVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFAN 172
Query: 241 NYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQP 273
N++ + VV G G ++HE LV + + Q
Sbjct: 173 NHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQT 206
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 232
Score = 107 bits (266), Expect = 5e-27
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 4/221 (1%)
Query: 60 NDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSE 119
+ TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LAF T
Sbjct: 9 SVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKN 68
Query: 120 YVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEIN 179
+ +E +G + S+R+ Y A + L +++L D+V +
Sbjct: 69 RPGNALEKE-VESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDS--Q 125
Query: 180 MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
+ ++ E + ++ + +HA A++ L P ++ ++ L YL
Sbjct: 126 IEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYL 185
Query: 240 KNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDK 279
+Y RMV+A G +EH L++ A K+F + +D
Sbjct: 186 SRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDA 226
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 202
Score = 100 bits (248), Expect = 7e-25
Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 8/197 (4%)
Query: 73 LRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK 132
L V++ + T+ V + GSRY GV+H L + F +T+ + + + E
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTR-SALKLVRESEL 57
Query: 133 IGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENY 192
+GG R+ A+ L + L DV+ + F E+ + +Y
Sbjct: 58 LGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELT--ESVLPAARYDY 115
Query: 193 QMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAG 252
+ + + A LG + ++ + + YT + V+G
Sbjct: 116 AVAEQCPVKSAEDQLYAITFRKGLG--NPLLYDGVERVSLQDIKDFADKVYTKENLEVSG 173
Query: 253 IG-VEHEALVEAANKYF 268
VE +
Sbjct: 174 ENVVEADLKRFVDESLL 190
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 94.4 bits (233), Expect = 1e-22
Identities = 69/207 (33%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
Query: 64 TQVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
T+ + LPNGL +A+E + T+G+ +D+GSR E +G +HFLE LAF T +
Sbjct: 3 TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGT-QNRP 61
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMAR 182
+ I +E IG + +SR+ +Y A + + + IL D++ + I R
Sbjct: 62 QQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERER 121
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNY 242
I E E ++ D +H YKD LG L P +I I L Y+
Sbjct: 122 DVIIRESEEVDKMYDEVV--FDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 179
Query: 243 YTPTRMVVAGIG-VEHEALVEAANKYF 268
Y RMV+AG G V+HE LV+ A KYF
Sbjct: 180 YKGDRMVLAGAGAVDHEKLVQYAQKYF 206
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
562]}
Length = 240
Score = 88.3 bits (217), Expect = 2e-20
Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 8/214 (3%)
Query: 61 DRNTQVTTLPNGLRVAS-ENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSE 119
+R Q L NG+ V + +++ GS + G++H+LE ++ + +
Sbjct: 18 NRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKK 77
Query: 120 YVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEIN 179
Y D++A+ L+ GG + ++ + L + L D + P ++
Sbjct: 78 YPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKK--Y 135
Query: 180 MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNT----L 235
R+ E R + + + ++ N L
Sbjct: 136 AERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL 195
Query: 236 FTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYF 268
+ + YY+ M L + A F
Sbjct: 196 KDFHEKYYSANLMKAVIYSNKPLPELAKMAADTF 229
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 87.6 bits (216), Expect = 5e-20
Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 22/217 (10%)
Query: 70 PNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQS 129
G V S + GV R +G+ H L+ + +Y K+ +
Sbjct: 30 KTGCEVMSVSNEDENKVFGV----VFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVEL 85
Query: 130 LEK-IGGICDCLSSRDTF-IYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQF 187
L+ + + + D AS T ++ + D V PK ++ ++ +
Sbjct: 86 LKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHY 145
Query: 188 EL---------------ENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINN 232
EL E + + + +L + A +NT G+ P I +
Sbjct: 146 ELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTF 205
Query: 233 NTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYF 268
+ + YY P+ + G + + ++Y
Sbjct: 206 EEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYL 242
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 83.0 bits (205), Expect = 2e-19
Identities = 28/215 (13%), Positives = 52/215 (24%), Gaps = 68/215 (31%)
Query: 294 ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFS 353
+ G + S IG+ VL + S
Sbjct: 4 KFFLGEENRVR-----------FIGDSVAAIGIPVNK---ASLAQYEVLANYLTSALSEL 49
Query: 354 AGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKE 413
+G ++A + D GLF + S V V +K+
Sbjct: 50 SG---------------------LISSAKLDKFTDGGLFTLFVRDQDSAV---VSSNIKK 85
Query: 414 LVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIEN 473
+V A +LS A + + E+ + E
Sbjct: 86 IV--ADLKKGKDLSPAINYTKLKNAVQNESVSSPIELNFDA------------------- 124
Query: 474 VTEDDIRRVASRLLTSQPSVAARGELINFPSYEDI 508
+ + A G++ N P +++
Sbjct: 125 ---------VKDFKLGKFNYVAVGDVSNLPYLDEL 150
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 196
Score = 56.7 bits (136), Expect = 6e-10
Identities = 18/173 (10%), Positives = 45/173 (26%), Gaps = 18/173 (10%)
Query: 320 SHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSA 379
++V S A V++ + L+ + +
Sbjct: 15 NYVGKAGNIYSTGYELDGSAYVISKHISNT--------------WLWDR-VRVSGGAYGG 59
Query: 380 TAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLM 439
+++ + + +I D L +D + L++A +
Sbjct: 60 FCDFDSHSGVFSYLSYRDPNLLKTLDIYDGTGDFLRG--LDVDQETLTKAIIGTIGDVDS 117
Query: 440 NLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPS 492
+ + R +L +R E I + D + A + +
Sbjct: 118 YQLPDAKGYSSLLRHLLGVTDEER-QRKREEILTTSLKDFKDFAQAIDVVRDK 169
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli
[TaxId: 562]}
Length = 229
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/176 (11%), Positives = 50/176 (28%), Gaps = 6/176 (3%)
Query: 317 PELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWM 376
PEL L V F ++ + + + L +
Sbjct: 20 PELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQ 79
Query: 377 FSATAYNHAYAD----TGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQ 432
S A + ++A+ + + L++ + D+L +AK
Sbjct: 80 LSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGY--FSYTATEDQLEQAKSW 137
Query: 433 LQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLT 488
M+ + + + Q+L+ + + ++T ++ L +
Sbjct: 138 YNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKS 193
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus
[TaxId: 63363]}
Length = 184
Score = 29.7 bits (66), Expect = 0.65
Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 13/105 (12%)
Query: 348 GGGSFSAGGPGKGMYTRLYTNVLNRHHWMF---SATAYNHAYADTGLFCIHASAPPS-NV 403
S+GG G G + + ++ F T Y + A P S
Sbjct: 88 ACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEE 147
Query: 404 KNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVF 448
K L + L +K+L + PA F
Sbjct: 148 KEACRRLGRRLAEWVA-----IFVDGRKELL----EKIRKDPARF 183
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 239
Score = 29.4 bits (65), Expect = 0.97
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 461 RKRPSTYIESIENVTE 476
KRP TYI S+E +
Sbjct: 16 LKRPDTYIGSVETQEQ 31
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 27.5 bits (60), Expect = 3.5
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 344 ILMGGGGSFSAG-----GPGKGMYTRLYTNVLNRHHWMFSATAYNH 384
++G G S S G PG G+Y L L +F +
Sbjct: 25 FMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQS 70
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Length = 74
Score = 25.9 bits (57), Expect = 3.6
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 173 FSEEEI-NMARQTIQFELENYQMRPEQETLLMDM 205
S +I M+ +Q L+N + Q L+ +
Sbjct: 17 VSAFQISEMSLSELQQVLKNESLSEYQRQLIRKI 50
>d1o75a2 b.1.20.1 (A:333-414) Tp47 lipoprotein, middle and
C-terminal domains {Treponema pallidum [TaxId: 160]}
Length = 82
Score = 25.8 bits (56), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 254 GVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGG 299
G + E L++AA F D QP + D+++ L + SA +T G
Sbjct: 20 GADAETLMDAAVDVFADGQPKLVSDQAVSLGQ----NVLSADFTPG 61
>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 78
Score = 25.5 bits (56), Expect = 4.9
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 442 EARPAVFEDVGRQVLATGHR-KRPSTYIESIENVTEDDIRR 481
E ++ + G + HR R IE IE ++ ++++
Sbjct: 34 EIYERLYSEFGSK-----HRVPRSKVKIEEIEEISPEEVQD 69
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 26.8 bits (59), Expect = 6.9
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 106 SHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILG 165
F E L F + KD + + I DC+ D T+G T +KIL
Sbjct: 263 KIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQC-DRCRLWGKIQTTGYATALKILF 321
Query: 166 DVVLRPKFSEEEIN 179
++ +F+++ I
Sbjct: 322 EINDADEFTKQHIV 335
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,942,446
Number of extensions: 91286
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 25
Length of query: 529
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 439
Effective length of database: 1,171,896
Effective search space: 514462344
Effective search space used: 514462344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)