BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8067
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 63 NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
N ++++L NGL+VA+ N G F +G+ ID+GSR+E G +H L++LAF ST E+V
Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKST-EHVE 63
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
A+A++LE +GG C SSR+ +Y AS + +++++ + V PK +++E+ +
Sbjct: 64 GRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
+ ++E++ M+P E +L +++H AAY TLG P +CP I I+ L Y
Sbjct: 124 LSAEYEIDEVWMKP--ELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDY 177
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 63 NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
TQV+ L NG+RVASE CT+GV ID+GSRYE +G +FLE LAF T
Sbjct: 13 ETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNR-P 71
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
++A+ + +E +G + SSR+ Y A + + +++L D+V +I R
Sbjct: 72 QNALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKER 131
Query: 183 QTIQFELE--NYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
I EL+ + MR ++ + +HA A++ L P +I ++ L YL
Sbjct: 132 DVIVRELQENDTSMR----EVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLTEYL 186
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 64 TQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LAF T
Sbjct: 14 TQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG- 72
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQ 183
+A+ + +E +G + S+R+ Y A + L +++L D+V +I R
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 184 TIQFELENYQMRPEQETLLMDMI----HAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
I EL+ E +T + D++ HA A++ L P ++ ++ L YL
Sbjct: 133 VILQELQ------ENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYL 186
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 64 TQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LAF T
Sbjct: 14 TQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG- 72
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQ 183
+A+ + +E +G + S+R+ Y A + L +++L D+V +I R
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 184 TIQFELENYQMRPEQETLLMDMI----HAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
I EL+ E +T + D++ HA A++ L P ++ ++ L YL
Sbjct: 133 VILQELQ------ENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYL 186
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 64 TQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LAF T
Sbjct: 48 TQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG- 106
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQ 183
+A+ + +E +G + S+R+ Y A + L +++L D+V +I R
Sbjct: 107 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 166
Query: 184 TIQFELENYQMRPEQETLLMDMI----HAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
I EL+ E +T + D++ HA A++ L P ++ ++ L YL
Sbjct: 167 VILQELQ------ENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYL 220
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 54 YSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLA 113
Y+ N T VTTL NGLRVASE CT+GV I +GSRYE +G +F+E LA
Sbjct: 4 YAQTLQNIPETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLA 63
Query: 114 FNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKF 173
F T + A + +E +G + +SR+ + A + + V+++L DVV
Sbjct: 64 FKGTKKRPCA-AFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCAL 122
Query: 174 SKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLG 217
+ +I R I EL+ +M + + D +HA A++ L
Sbjct: 123 EESQIEKERGVILQELK--EMDNDMTNVTFDYLHATAFQGTALA 164
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 10/196 (5%)
Query: 50 PKVHYSCVKDNDR------NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPS 103
PKV S + + + ++T LPNGL +AS F IGV I +GSRYE
Sbjct: 6 PKVAVSAAAERVKLCPGAEDLEITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANL 65
Query: 104 GVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKI 163
G +H L +LA T++ + I + +E +GG S+R+ Y +DTVM+
Sbjct: 66 GTAHLL-RLASPLTTKGASSFRITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEY 124
Query: 164 LGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCP 223
L +V P+F E+ + Q +++ + +++ +HAAAYK L P CP
Sbjct: 125 LLNVTTAPEFRPWEVTDLQP--QLKVDKAVAFQSPQVGVLENLHAAAYK-TALANPLYCP 181
Query: 224 PASIGVINNNTLFTYL 239
IG I + L ++
Sbjct: 182 DYRIGKITSEQLHHFV 197
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 4/177 (2%)
Query: 64 TQVTTLPNGLRVASEN-RFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
T+ + LPNGL +A+E S T+G+ +D+GSR E +G +HFLE LAF T
Sbjct: 7 TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQ 66
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
+ I +E IG + +SR+ +Y A + + + IL D++ + I R
Sbjct: 67 Q-GIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERER 125
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
I E E ++ + ++ D +H YKD LG L P +I I L Y+
Sbjct: 126 DVIIRESE--EVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYI 180
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
++ ++T LPNGL +AS + TIGV I +GSRYE G SH L +LA + T++
Sbjct: 5 QDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLL-RLASSLTTKGA 63
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMA 181
+ I + +E +GG S+R+ Y ++ +M+ L +V P+F E+ A
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEV--A 121
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
Q +++ +T +++ +HAAAY+ N L CP IG + + L ++
Sbjct: 122 DLQPQLKIDKAVAFQNPQTHVIENLHAAAYR-NALADSLYCPDYRIGKVTSVELHDFV 178
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
++ ++T LPNGL +AS + TIGV I +GSRYE G SH L +LA + T++
Sbjct: 5 QDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLL-RLASSLTTKGA 63
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMA 181
+ I + +E +GG S+R+ Y ++ +M+ L +V P+F E+ A
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEV--A 121
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
Q +++ +T +++ +HAAAY+ N L CP IG + + L ++
Sbjct: 122 DLQPQLKIDKAVAFQNPQTHVIENLHAAAYR-NALADSLYCPDYRIGKVTSVELHDFV 178
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 4/177 (2%)
Query: 64 TQVTTLPNGLRVASEN-RFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
T+ + LPNGL +A+E S T+G+ +D+GSR E +G +HFL+ LAF T
Sbjct: 7 TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQNRPQ 66
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
+ I +E IG + +SR+ +Y A + + + IL D++ + I R
Sbjct: 67 Q-GIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERER 125
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
I E E ++ + ++ D +H YKD LG L P +I I L Y+
Sbjct: 126 DVIIRESE--EVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYI 180
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 4/183 (2%)
Query: 57 VKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNS 116
V + ++ + T LPNGL +AS + IG+ I +GSRYE G SH L +LA +
Sbjct: 31 VPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL-RLASSL 89
Query: 117 TSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKE 176
T++ + I + +E +GG S+R+ Y +D +M+ L +V P+F +
Sbjct: 90 TTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRW 149
Query: 177 EINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLF 236
E+ + ++ + P+ +++ +HAAAY+ N L CP IG + L
Sbjct: 150 EVAALQPQLRIDKAVALQNPQAH--VIENLHAAAYR-NALANSLYCPDYRIGKVTPVELH 206
Query: 237 TYL 239
Y+
Sbjct: 207 DYV 209
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 4/183 (2%)
Query: 57 VKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNS 116
V + ++ + T LPNGL +AS + IG+ I +GSRYE G SH L +LA +
Sbjct: 1 VPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL-RLASSL 59
Query: 117 TSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKE 176
T++ + I + +E +GG S+R+ Y +D +M+ L +V P+F +
Sbjct: 60 TTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRW 119
Query: 177 EINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLF 236
E+ + ++ + P+ +++ +HAAAY+ N L CP IG + L
Sbjct: 120 EVAALQPQLRIDKAVALQNPQAH--VIENLHAAAYR-NALANSLYCPDYRIGKVTPVELH 176
Query: 237 TYL 239
Y+
Sbjct: 177 DYV 179
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 4/183 (2%)
Query: 57 VKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNS 116
V + ++ + T LPNGL +AS + IG+ I +GSRYE G SH L +LA +
Sbjct: 17 VPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL-RLASSL 75
Query: 117 TSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKE 176
T++ + I + +E +GG S+R+ Y +D +M+ L +V P+F +
Sbjct: 76 TTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRW 135
Query: 177 EINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLF 236
E+ + ++ + P+ +++ +HAAAY+ N L CP IG + L
Sbjct: 136 EVAALQPQLRIDKAVALQNPQAH--VIENLHAAAYR-NALANSLYCPDYRIGKVTPVELH 192
Query: 237 TYL 239
Y+
Sbjct: 193 DYV 195
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 68 TLPNGLRVASENRFG-SFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAI 126
TL NG+R+ +E +IG+ + +GSRYE +G+SHFLE + F T+ ++ I
Sbjct: 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQE-I 64
Query: 127 AQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQ 186
A+ + IGG + +S++ Y A + L D+ F KEE+ R+ +
Sbjct: 65 AEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVF 124
Query: 187 FELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
E++ P+ ++ D++ +A Y ++LG P L ++ N L Y+
Sbjct: 125 EEIKMVDDTPDD--IVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYM 175
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 69 LPNGLRVASENRFGSF-CTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIA 127
L NGLRV +E G+ +G + +G+R E SGVSHFLE F + DA+A
Sbjct: 7 LRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHXVFKGPE---DXDALA 63
Query: 128 --QSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTI 185
++ ++ G + +S + +Y + ++ + +LRP +E+ + I
Sbjct: 64 VNRAFDRXGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAK-LLRPALREEDFQTEKLVI 122
Query: 186 QFELENYQMRP 196
E+ YQ RP
Sbjct: 123 LEEIARYQDRP 133
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 65 QVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKD 124
+VT L NG+ VA+E+ ++GV+ SG+ E PY +GVS+ + + +++K+
Sbjct: 2 EVTQLSNGIVVATEHNPAHTASVGVVFGSGAANENPYNNGVSNLWKNI-------FLSKE 54
Query: 125 AIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPK--------FSKE 176
A + K G SRD Y S+ D + L ++ K F
Sbjct: 55 NSAVA-AKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEAT 113
Query: 177 EINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219
+ ++ +Q FE ++ R +++ +H+ A+++ L LP
Sbjct: 114 KKSVLKQVQDFEDNDHPNR------VLEHLHSTAFQNTPLSLP 150
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 65 QVTTLPNGLRVASE-NRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
+VT L NG+ VA+E N ++GV+ SG+ E PY +GVS+ + + +++K
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI-------FLSK 54
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPK--------FSK 175
+ A + K G SRD Y S+ D + L ++ K F
Sbjct: 55 ENSAVA-AKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEA 113
Query: 176 EEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219
+ ++ +Q FE ++ R +++ +H+ A+++ L LP
Sbjct: 114 TKKSVLKQVQDFEDNDHPNR------VLEHLHSTAFQNTPLSLP 151
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 67 TTLPNGLR-VASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDA 125
TTLPNGL+ V E+ V GS E +GV+H LE + F T + V
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKD-VGPGE 68
Query: 126 IAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGD----VVLRPKFSKEEINMA 181
++ + +GG + ++RD Y +S L VM + D +V+ + K+EI +
Sbjct: 69 FSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVI 128
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGL 218
+ ++ ++ E L+ A Y+ +G
Sbjct: 129 AEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGW 165
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 67 TTLPNGLR-VASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDA 125
TTLPNGL+ V E+ V GS E +GV+H LE + F T + V
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKD-VGPGE 68
Query: 126 IAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGD----VVLRPKFSKEEINMA 181
++ + +GG + ++RD Y +S L VM + D +V+ + K+EI +
Sbjct: 69 FSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVI 128
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGL 218
+ ++ ++ E L+ A Y+ +G
Sbjct: 129 AEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGW 165
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
E + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 EHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSK 175
P F +
Sbjct: 142 SPLFDE 147
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSK 175
P F +
Sbjct: 142 SPLFDE 147
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 53 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 110
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 111 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 170
Query: 170 RPKFSK 175
P F +
Sbjct: 171 SPLFDE 176
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSK 175
P F +
Sbjct: 142 SPLFDE 147
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSK 175
P F +
Sbjct: 142 SPLFDE 147
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHFL
Sbjct: 11 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFL 68
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 69 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 128
Query: 170 RPKFSK 175
P F +
Sbjct: 129 SPLFDE 134
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHF
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFC 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
E + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 EHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSK 175
P F +
Sbjct: 142 CPLFDE 147
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 155 SGLDTVMKILGDVVLRPKFSKEEI---NMARQTIQFELENYQMRPE 197
+G D ++++L F++EEI N+ R+T+ LENY++ PE
Sbjct: 171 TGQDAIIRLLSKACRNESFTEEEISAXNLDRKTVVPLLENYKVGPE 216
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 53 HYSCVKDNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFL 109
H + ++ R + L NG++V + S + V I GS + P +G+SHF
Sbjct: 24 HITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFC 81
Query: 110 EKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169
+ + F T +Y ++ +Q L + G + +S + Y + L+ + L
Sbjct: 82 QHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFL 141
Query: 170 RPKFSK 175
P F +
Sbjct: 142 CPLFDE 147
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 59 DNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFN 115
++ R + L NG++V + S + V I GS + P G+SHF E + F
Sbjct: 18 EDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIPGLSHFCEHMLFL 75
Query: 116 STSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFS 174
T +Y ++ +Q L + G + +S + Y + L+ + L P F
Sbjct: 76 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFD 134
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 59 DNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFN 115
++ R + L NG++V + S + V I GS + P G+SHF E + F
Sbjct: 59 EDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIPGLSHFCEHMLFL 116
Query: 116 STSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFS 174
T +Y ++ +Q L + G + +S + Y + L+ + L P F
Sbjct: 117 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFD 175
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 156 GLDTVMKILGDVVLRPKFSKEEI---NMARQTIQFELENYQMRPE 197
G D V+++L F++EE+ N+ R+TI LENY + PE
Sbjct: 163 GQDAVIRLLSKACRNDPFTEEEMTAMNLDRKTIVPYLENYTIGPE 207
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 156 GLDTVMKILGDVVLRPKFSKEEI---NMARQTIQFELENYQMRPE 197
G D V+++L F++EE N+ R+TI LENY + PE
Sbjct: 164 GQDAVIRLLSKACRNDPFTEEEXTAXNLDRKTIVPYLENYTIGPE 208
>pdb|3GO9|A Chain A, Predicted Insulinase Family Protease From Yersinia Pestis
Length = 492
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 75 VASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIG 134
+A+ R + +I+++GS E G +H L +LA S++ + A QSL + G
Sbjct: 40 LATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALXSSASFT--PAQLQSLWQQG 97
Query: 135 -----GICDCLSSRDTFIYAASAATSGLDTV---MKILGDVVLRPKFSKEEINMARQT 184
+ ++S D +Y+ S + D + + L D S++ +N A T
Sbjct: 98 IDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNT 155
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 59 DNDRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFN 115
++ R + L NG++V + S + V I GS + P G+SHF + F
Sbjct: 59 EDKREYRGLELANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIPGLSHFCFHMLFL 116
Query: 116 STSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFS 174
T +Y ++ +Q L + G + +S + Y + L+ + L P F
Sbjct: 117 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFD 175
>pdb|1QJH|A Chain A, Protein Aggregation And Alzheimer's Disease.
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization
Length = 101
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 166 DVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHA 208
++VL P + ++ + ++ IQ LENY R E+ +L M+ A
Sbjct: 7 NIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLMVLA 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,271,197
Number of Sequences: 62578
Number of extensions: 222430
Number of successful extensions: 392
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 46
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)