Query psy8067
Match_columns 239
No_of_seqs 188 out of 1394
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 17:32:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ami_A Zinc peptidase; alpha/b 100.0 8.3E-30 2.8E-34 226.8 18.8 176 61-239 4-181 (445)
2 3eoq_A Putative zinc protease; 100.0 1.9E-29 6.4E-34 222.0 19.3 172 64-239 2-174 (406)
3 3hdi_A Processing protease; CA 100.0 5.6E-29 1.9E-33 219.7 18.5 173 64-239 2-175 (421)
4 1hr6_B Beta-MPP, mitochondrial 100.0 3E-28 1E-32 216.2 20.8 176 61-239 4-180 (443)
5 1hr6_A Alpha-MPP, mitochondria 100.0 2.9E-28 1E-32 218.8 20.5 176 61-239 3-178 (475)
6 1pp9_A Ubiquinol-cytochrome C 100.0 4.8E-28 1.6E-32 215.5 19.6 176 61-239 11-186 (446)
7 3gwb_A Peptidase M16 inactive 100.0 5.4E-27 1.8E-31 207.3 20.6 176 60-239 10-188 (434)
8 1pp9_B Ubiquinol-cytochrome C 100.0 1E-26 3.5E-31 205.8 21.5 176 60-239 20-195 (439)
9 1q2l_A Protease III; hydrolase 99.9 6.5E-27 2.2E-31 225.6 17.1 176 62-239 19-199 (939)
10 3amj_B Zinc peptidase inactive 99.9 2.3E-26 7.9E-31 202.8 19.2 173 62-239 2-181 (424)
11 3cww_A Insulysin, insulin-degr 99.9 2.6E-25 8.8E-30 215.6 19.0 178 60-239 31-216 (990)
12 3cx5_B Cytochrome B-C1 complex 99.9 3.2E-24 1.1E-28 185.0 17.3 159 73-239 1-160 (352)
13 3cx5_A Cytochrome B-C1 complex 99.9 6.3E-24 2.2E-28 187.3 16.0 166 65-239 2-171 (431)
14 3d3y_A Uncharacterized protein 99.9 2.9E-23 1E-27 182.5 17.9 168 67-239 6-192 (425)
15 3go9_A Insulinase family prote 99.9 3.4E-23 1.2E-27 187.1 11.4 171 61-239 23-203 (492)
16 2fge_A Atprep2;, zinc metallop 99.9 4.2E-22 1.4E-26 193.3 12.4 172 62-239 36-226 (995)
17 3s5m_A Falcilysin; M16 metallo 99.9 5.3E-22 1.8E-26 194.1 10.8 174 61-239 84-292 (1193)
18 1q2l_A Protease III; hydrolase 99.5 5.2E-14 1.8E-18 135.6 13.4 164 64-239 500-668 (939)
19 2fge_A Atprep2;, zinc metallop 99.5 2.1E-13 7E-18 132.4 12.5 172 62-239 552-749 (995)
20 3cww_A Insulysin, insulin-degr 99.4 1.2E-11 4E-16 119.9 17.8 164 65-239 520-687 (990)
21 3s5m_A Falcilysin; M16 metallo 98.5 1E-06 3.5E-11 86.7 13.1 123 70-194 724-864 (1193)
22 3ih6_A Putative zinc protease; 97.7 0.0011 3.7E-08 51.4 13.5 144 83-238 23-176 (197)
23 3eoq_A Putative zinc protease; 97.0 0.0064 2.2E-07 52.4 11.8 145 83-238 234-387 (406)
24 3d3y_A Uncharacterized protein 96.9 0.013 4.5E-07 50.4 12.7 147 82-238 252-406 (425)
25 3cx5_A Cytochrome B-C1 complex 96.9 0.013 4.4E-07 50.6 12.2 156 74-238 222-395 (431)
26 3hdi_A Processing protease; CA 96.8 0.016 5.5E-07 50.0 12.4 148 80-238 230-387 (421)
27 3amj_B Zinc peptidase inactive 96.7 0.049 1.7E-06 46.9 14.3 148 81-238 239-396 (424)
28 1hr6_B Beta-MPP, mitochondrial 96.6 0.057 2E-06 46.8 14.4 149 81-238 243-410 (443)
29 1pp9_B Ubiquinol-cytochrome C 96.5 0.05 1.7E-06 47.0 13.5 150 81-238 249-413 (439)
30 1pp9_A Ubiquinol-cytochrome C 96.5 0.061 2.1E-06 46.8 14.1 148 82-238 248-410 (446)
31 3gwb_A Peptidase M16 inactive 96.3 0.038 1.3E-06 47.7 11.2 147 82-238 247-403 (434)
32 1hr6_A Alpha-MPP, mitochondria 96.1 0.092 3.2E-06 46.2 13.2 149 82-238 241-410 (475)
33 3ami_A Zinc peptidase; alpha/b 95.6 0.078 2.7E-06 46.1 10.3 110 125-238 282-404 (445)
34 3go9_A Insulinase family prote 86.5 8 0.00027 34.0 11.6 94 144-238 328-430 (492)
35 1rpq_W Peptide E131; receptor- 44.3 2.6 8.7E-05 20.4 -1.0 13 21-33 1-13 (26)
36 2cok_A Poly [ADP-ribose] polym 23.3 79 0.0027 21.8 3.5 37 112-149 16-52 (113)
37 2dt9_A Aspartokinase; protein- 23.3 1.6E+02 0.0055 21.3 5.5 46 124-170 113-158 (167)
38 2vi8_A Serine hydroxymethyltra 21.7 1.6E+02 0.0054 24.1 5.8 62 122-184 323-399 (405)
No 1
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.97 E-value=8.3e-30 Score=226.84 Aligned_cols=176 Identities=23% Similarity=0.284 Sum_probs=166.3
Q ss_pred CCCcEEEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeee
Q psy8067 61 DRNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139 (239)
Q Consensus 61 ~~~~~~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~ 139 (239)
.++++.++|+||++|++++.+ .+.+.+.+++++|+..|+.+..|++|+++||+++|++++ +..++.+.++++|+++++
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~-~~~~l~~~l~~~g~~~na 82 (445)
T 3ami_A 4 AASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDV-GPGEFSKRVAAMGGRDNA 82 (445)
T ss_dssp GGGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSS-CTTHHHHHHHHTTCEEEE
T ss_pred CcCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCC-CHHHHHHHHHHhCCcccc
Confidence 457889999999999998765 589999999999999999999999999999999999999 568999999999999999
Q ss_pred eeccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-HHhcCCchHHHHHHHHHHHhcCCCCCCC
Q psy8067 140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELE-NYQMRPEQETLLMDMIHAAAYKDNTLGL 218 (239)
Q Consensus 140 ~~~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~-~~~~~p~~~~~~~~~l~~~~~~~~p~~~ 218 (239)
+++.+++.|.+++++++++.+|+++++++++|.|++++|+++++.+.++++ ...++| ...+.+.+.+.+|++|||++
T Consensus 83 ~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p--~~~~~~~~~~~~~~~~p~~~ 160 (445)
T 3ami_A 83 FTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKP--RSKAYEALMAASYVAHPYRV 160 (445)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCH--HHHHHHHHHHHHCSSSGGGS
T ss_pred ccCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCCh--HHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999999999999999999999998 567777 88999999999999999999
Q ss_pred CCCCChhhhcCCCHHHHhccC
Q psy8067 219 PKLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 219 ~~~g~~~~l~~i~~e~l~~~y 239 (239)
+..|+.++|++++.+++++||
T Consensus 161 ~~~G~~e~l~~it~~~l~~f~ 181 (445)
T 3ami_A 161 PVIGWMNDIQNMTAQDVRDWY 181 (445)
T ss_dssp CTTCCHHHHHHCCHHHHHHHH
T ss_pred CCCCCHHHHhhCCHHHHHHHH
Confidence 999999999999999999986
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.97 E-value=1.9e-29 Score=222.05 Aligned_cols=172 Identities=24% Similarity=0.426 Sum_probs=165.5
Q ss_pred cEEEEcCCCCEEEEeeCCC-CeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeeec
Q psy8067 64 TQVTTLPNGLRVASENRFG-SFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS 142 (239)
Q Consensus 64 ~~~~~L~NG~~v~~~~~~~-~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~~ 142 (239)
++.++|+||++|++.+.+. +.+.+.+++++|+..|+++..|++|+++||+++|+.++ +..++.+.++..|++++++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~-~~~~~~~~l~~~G~~~na~t~ 80 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDM-DALAVNRAFDRMGAQYNAFTS 80 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTC-CHHHHHHHHHHTTCEEEEEEC
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCCccceec
Confidence 5789999999999988764 89999999999999999999999999999999999999 889999999999999999999
Q ss_pred cceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCC
Q psy8067 143 RDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLC 222 (239)
Q Consensus 143 ~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g 222 (239)
.+++.|.+++++++++.+|+++.+++ +|.|++++|+++|+.+.++++...++| ...+.+.+.+.+|++|||+++..|
T Consensus 81 ~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~p~~~~~~G 157 (406)
T 3eoq_A 81 EEATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRP--GFMAYEWARARFFQGHPLGNSVLG 157 (406)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTTCGGGCCSSC
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCCCCCcC
Confidence 99999999999999999999999999 999999999999999999999998888 899999999999999999999999
Q ss_pred ChhhhcCCCHHHHhccC
Q psy8067 223 PPASIGVINNNTLFTYL 239 (239)
Q Consensus 223 ~~~~l~~i~~e~l~~~y 239 (239)
+.++|++++.+++++||
T Consensus 158 ~~~~i~~~t~~~l~~f~ 174 (406)
T 3eoq_A 158 TRESITALTREGMAAYH 174 (406)
T ss_dssp CHHHHHHCCHHHHHHHH
T ss_pred CHHHHhhCCHHHHHHHH
Confidence 99999999999999987
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.96 E-value=5.6e-29 Score=219.72 Aligned_cols=173 Identities=28% Similarity=0.502 Sum_probs=166.3
Q ss_pred cEEEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeeec
Q psy8067 64 TQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS 142 (239)
Q Consensus 64 ~~~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~~ 142 (239)
++.++|+||++|++.+.+ .+.+.+.+++++|+..|+.+..|++|+++||++.|+.++ +..++.+.++..|++++++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~-~~~~~~~~l~~~G~~~na~t~ 80 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTR-SAQEIAEFFDSIGGQVNAFTS 80 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSS-BHHHHHHHHHTTTSCEEEEEC
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCC-CHHHHHHHHHHhCCceeeeec
Confidence 578999999999998876 589999999999999999999999999999999999998 889999999999999999999
Q ss_pred cceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCC
Q psy8067 143 RDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLC 222 (239)
Q Consensus 143 ~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g 222 (239)
.+++.|++++++++++.+|+++++++++|.|++++++++|+.+.++++...++| ...+.+.+.+.+|++|||+++..|
T Consensus 81 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~p~~~~~~G 158 (421)
T 3hdi_A 81 KEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTP--DDIVHDLLSSATYGKHSLGYPILG 158 (421)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHTTSGGGSCTTC
T ss_pred cceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHhcCCCCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999998888 899999999999999999999999
Q ss_pred ChhhhcCCCHHHHhccC
Q psy8067 223 PPASIGVINNNTLFTYL 239 (239)
Q Consensus 223 ~~~~l~~i~~e~l~~~y 239 (239)
+.++|++++.+++++||
T Consensus 159 ~~~~l~~it~~~l~~f~ 175 (421)
T 3hdi_A 159 TVETLNSFNEGMLRHYM 175 (421)
T ss_dssp CHHHHHHCCHHHHHHHH
T ss_pred CHHHHHhCCHHHHHHHH
Confidence 99999999999999986
No 4
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.96 E-value=3e-28 Score=216.20 Aligned_cols=176 Identities=31% Similarity=0.488 Sum_probs=166.8
Q ss_pred CCCcEEEEcCCCCEEEEeeCCC-CeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeee
Q psy8067 61 DRNTQVTTLPNGLRVASENRFG-SFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139 (239)
Q Consensus 61 ~~~~~~~~L~NG~~v~~~~~~~-~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~ 139 (239)
.+.++.++|+||++|++.+++. +.+.+.+++++|+..|+.+..|++|+++||+++|++++ +..++.+.++++|+++++
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~-~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNR-PQQGIELEIENIGSHLNA 82 (443)
T ss_dssp -CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSC-BHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCC-CHHHHHHHHHHcCCeEEE
Confidence 3567889999999999988765 59999999999999999889999999999999999998 888999999999999999
Q ss_pred eeccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCC
Q psy8067 140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219 (239)
Q Consensus 140 ~~~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~ 219 (239)
+++.+++.|+++++.++++.+|+++.+++++|.|++++|+++++.+.++++...++| ...+.+.+.+.+|++|||+++
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 160 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMY--DEVVFDHLHEITYKDQPLGRT 160 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSC
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999988888 889999999999999999998
Q ss_pred CCCChhhhcCCCHHHHhccC
Q psy8067 220 KLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 220 ~~g~~~~l~~i~~e~l~~~y 239 (239)
..|+.++|++++.+++++||
T Consensus 161 ~~g~~~~i~~~~~~~l~~f~ 180 (443)
T 1hr6_B 161 ILGPIKNIKSITRTDLKDYI 180 (443)
T ss_dssp SSCCHHHHHHCCHHHHHHHH
T ss_pred CcCCHHHHhhCCHHHHHHHH
Confidence 89999999999999999986
No 5
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.96 E-value=2.9e-28 Score=218.84 Aligned_cols=176 Identities=35% Similarity=0.659 Sum_probs=168.4
Q ss_pred CCCcEEEEcCCCCEEEEeeCCCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeee
Q psy8067 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCL 140 (239)
Q Consensus 61 ~~~~~~~~L~NG~~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~ 140 (239)
++.++.++|+||++|++.+.+.+.+.+.+++++|++.|+++..|++|+++||++.|+.++ +..++.+.++..|++++++
T Consensus 3 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~-~~~~~~~~le~~G~~~na~ 81 (475)
T 1hr6_A 3 TDNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-EGRAMAETLELLGGNYQCT 81 (475)
T ss_dssp TTCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTB-CHHHHHHHHHHTTSCEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCC-CHHHHHHHHHHcCCEEEEE
Confidence 467889999999999998877789999999999999999999999999999999999998 8899999999999999999
Q ss_pred eccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCC
Q psy8067 141 SSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220 (239)
Q Consensus 141 ~~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~ 220 (239)
++.+.+.|++++.+++++.+|+++.+++.+|.|++++|+++|+.+.+++++..++| ...+.+.++..+|+++||+++.
T Consensus 82 t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
T 1hr6_A 82 SSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKP--ELVLPELLHTAAYSGETLGSPL 159 (475)
T ss_dssp ECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSCS
T ss_pred EccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988888 8899999999999999999999
Q ss_pred CCChhhhcCCCHHHHhccC
Q psy8067 221 LCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 221 ~g~~~~l~~i~~e~l~~~y 239 (239)
+|+.+.|++++.++|++||
T Consensus 160 ~G~~~~l~~it~~~l~~f~ 178 (475)
T 1hr6_A 160 ICPRGLIPSISKYYLLDYR 178 (475)
T ss_dssp SCCGGGGGGCCHHHHHHHH
T ss_pred cCCHHHHhhcCHHHHHHHH
Confidence 9999999999999999986
No 6
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.96 E-value=4.8e-28 Score=215.53 Aligned_cols=176 Identities=31% Similarity=0.489 Sum_probs=167.6
Q ss_pred CCCcEEEEcCCCCEEEEeeCCCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeee
Q psy8067 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCL 140 (239)
Q Consensus 61 ~~~~~~~~L~NG~~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~ 140 (239)
.+.++.++|+||++|++.+.+.+.+.+.+++++|+..|+.+..|++|+++||++.|+.++ +..++.+.++..|++++++
T Consensus 11 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~-~~~~~~~~l~~~G~~~na~ 89 (446)
T 1pp9_A 11 VPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNR-PGNALEKEVESMGAHLNAY 89 (446)
T ss_dssp SCCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSS-TTTHHHHHHHHTTCEEEEE
T ss_pred ccCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCC-CHHHHHHHHHHcCCEEEEE
Confidence 467788999999999998877789999999999999999889999999999999999998 6778999999999999999
Q ss_pred eccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCC
Q psy8067 141 SSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220 (239)
Q Consensus 141 ~~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~ 220 (239)
++.+++.|+++++.++++.+|+++.+++.+|.|++++|+++|+.+.++++...++| ...+.+.+.+.+|++|||+++.
T Consensus 90 t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 167 (446)
T 1pp9_A 90 STREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSM--RDVVFNYLHATAFQGTPLAQSV 167 (446)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSCS
T ss_pred EcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCH--HHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988888 8899999999999999999999
Q ss_pred CCChhhhcCCCHHHHhccC
Q psy8067 221 LCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 221 ~g~~~~l~~i~~e~l~~~y 239 (239)
.|+.++|++++.+++++||
T Consensus 168 ~G~~~~l~~~~~~~l~~f~ 186 (446)
T 1pp9_A 168 EGPSENVRKLSRADLTEYL 186 (446)
T ss_dssp SCCHHHHHHCCHHHHHHHH
T ss_pred cCCHHHHHhCCHHHHHHHH
Confidence 9999999999999999986
No 7
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.95 E-value=5.4e-27 Score=207.35 Aligned_cols=176 Identities=16% Similarity=0.194 Sum_probs=166.1
Q ss_pred CCCCcEEEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeee
Q psy8067 60 NDRNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICD 138 (239)
Q Consensus 60 ~~~~~~~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~ 138 (239)
..++++.++|+||++|++++.+ .+.+.+.+++++|+..+ ++..|++|+++||+++|++++ +..++.+.+++.|++++
T Consensus 10 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~-~~~~l~~~l~~~g~~~~ 87 (434)
T 3gwb_A 10 RNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGK-DVGAIAQGFEGLGADFG 87 (434)
T ss_dssp --CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTE-EHHHHHHHHHTTTCEEE
T ss_pred cCCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccC-CHHHHHHHHHHhCCEEE
Confidence 3467899999999999998866 48999999999999998 778999999999999999998 88999999999999999
Q ss_pred eeeccceeEEEEEecCCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCC
Q psy8067 139 CLSSRDTFIYAASAATSG--LDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTL 216 (239)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~ 216 (239)
++++.+.+.|++++..++ ++.+|+++++++++|+|++++|+++++.+..++++..++| ...+.+.+...+|++|||
T Consensus 88 a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p--~~~~~~~~~~~~~~~~~~ 165 (434)
T 3gwb_A 88 NGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNP--GKLASLELMKRLYGTHPY 165 (434)
T ss_dssp EEECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTTSTT
T ss_pred eeecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCCCCC
Confidence 999999999999999988 9999999999999999999999999999999999998887 899999999999999999
Q ss_pred CCCCCCChhhhcCCCHHHHhccC
Q psy8067 217 GLPKLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 217 ~~~~~g~~~~l~~i~~e~l~~~y 239 (239)
+++..|+.++|++++.+++++||
T Consensus 166 ~~~~~G~~~~l~~it~~~l~~f~ 188 (434)
T 3gwb_A 166 AHASDGDAKSIPPITLAQLKAFH 188 (434)
T ss_dssp SSCTTCCTTTTTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHhCCHHHHHHHH
Confidence 99999999999999999999986
No 8
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.95 E-value=1e-26 Score=205.83 Aligned_cols=176 Identities=28% Similarity=0.485 Sum_probs=167.0
Q ss_pred CCCCcEEEEcCCCCEEEEeeCCCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeee
Q psy8067 60 NDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139 (239)
Q Consensus 60 ~~~~~~~~~L~NG~~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~ 139 (239)
..++++.++|+||++|++++...+.+.+.+++++|+..++++..|++|+++||++.|++++ +..++.+.++..|+++++
T Consensus 20 ~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~-~~~~~~~~l~~~G~~~na 98 (439)
T 1pp9_B 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA-SSFKITRGIEAVGGKLSV 98 (439)
T ss_dssp -CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSS-CHHHHHHHHHHTTCEEEE
T ss_pred cCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcC-CHHHHHHHHHHhCCeEEE
Confidence 4578899999999999998776699999999999999999889999999999999999998 889999999999999999
Q ss_pred eeccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCC
Q psy8067 140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219 (239)
Q Consensus 140 ~~~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~ 219 (239)
+++.+.+.|++++++++++.+|+++.+++++|.|++++|+++|+.+.++++...++| ...+.+.+.+.+|+ |||+++
T Consensus 99 ~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p--~~~~~~~~~~~~~~-~~~~~~ 175 (439)
T 1pp9_B 99 TSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNP--QAHVIENLHAAAYR-NALANS 175 (439)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHBS-SGGGSC
T ss_pred EecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHhc-CCCCCC
Confidence 999999999999999999999999999999999999999999999999999988877 88999999999999 999999
Q ss_pred CCCChhhhcCCCHHHHhccC
Q psy8067 220 KLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 220 ~~g~~~~l~~i~~e~l~~~y 239 (239)
..|+.++|++++.+++++||
T Consensus 176 ~~g~~~~l~~it~~~l~~f~ 195 (439)
T 1pp9_B 176 LYCPDYRIGKVTPVELHDYV 195 (439)
T ss_dssp SSCCGGGTTTCCHHHHHHHH
T ss_pred ccCCHHHHhhcCHHHHHHHH
Confidence 89999999999999999986
No 9
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.95 E-value=6.5e-27 Score=225.56 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=166.7
Q ss_pred CCcEEEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeee
Q psy8067 62 RNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCL 140 (239)
Q Consensus 62 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~ 140 (239)
..++.++|+||++|++.+.+ .+.+.+.+++++|+..|+.+..|++|+++||+|.|+.+|++..++.+.++..|+++|++
T Consensus 19 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~ 98 (939)
T 1q2l_A 19 RQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNAS 98 (939)
T ss_dssp CEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEE
T ss_pred cceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEE
Confidence 45789999999999998765 57899999999999999999999999999999999999966679999999999999999
Q ss_pred eccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCC
Q psy8067 141 SSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220 (239)
Q Consensus 141 ~~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~ 220 (239)
++.+++.|.++++.++++.+|.++++++.+|.|+++++++++..+.++++...++| ...+.+.+...+|++|||+++.
T Consensus 99 T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~ 176 (939)
T 1q2l_A 99 TAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRD--GMRMAQVSAETINPAHPGSKFS 176 (939)
T ss_dssp ECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHSSCTTSGGGSCC
T ss_pred ECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999988877 7889999999999999999999
Q ss_pred CCChhhhcC----CCHHHHhccC
Q psy8067 221 LCPPASIGV----INNNTLFTYL 239 (239)
Q Consensus 221 ~g~~~~l~~----i~~e~l~~~y 239 (239)
.|+.++|.+ ++.++|++||
T Consensus 177 ~G~~~~l~~~~~~~~~~~l~~f~ 199 (939)
T 1q2l_A 177 GGNLETLSDKPGNPVQQALKDFH 199 (939)
T ss_dssp SCCHHHHSCBTTBCHHHHHHHHH
T ss_pred CCCHHHHhcCCCchHHHHHHHHH
Confidence 999999999 9999999997
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.94 E-value=2.3e-26 Score=202.84 Aligned_cols=173 Identities=21% Similarity=0.272 Sum_probs=163.7
Q ss_pred CCcEEEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccC----CCCCHHHHHHHHHHhCCe
Q psy8067 62 RNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTS----EYVNKDAIAQSLEKIGGI 136 (239)
Q Consensus 62 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~----~~~s~~~l~~~l~~~g~~ 136 (239)
++++.++|+||++|++++++ .+.+.+.+++++|+..++.+..|++|+++||++.|+. ++ +..++.+.+++.|++
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~-~~~~~~~~l~~~G~~ 80 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSAL-DENAIADRLADIGAR 80 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCE-EHHHHHHHHHHTTCE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCC-CHHHHHHHHHHhCCE
Confidence 46788999999999998866 5899999999999999999899999999999999999 98 889999999999999
Q ss_pred eeeeeccceeEEEEEecCCCH--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCC
Q psy8067 137 CDCLSSRDTFIYAASAATSGL--DTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDN 214 (239)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l--e~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~ 214 (239)
++++++.+.+.|++++.++++ +.+|+++++++.+|.|++++|+++++.+.+++++..++| ...+.+.+.+.+|++|
T Consensus 81 ~~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~ 158 (424)
T 3amj_B 81 LGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQP--GSILGRRFTELAYGKH 158 (424)
T ss_dssp EEEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHHTTS
T ss_pred EEeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHhcCCCC
Confidence 999999999999999999998 999999999999999999999999999999999988877 8899999999999999
Q ss_pred CCCCCCCCChhhhcCCCHHHHhccC
Q psy8067 215 TLGLPKLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 215 p~~~~~~g~~~~l~~i~~e~l~~~y 239 (239)
||+.+. +.++|++++.+++++||
T Consensus 159 p~~~~~--~~~~l~~it~~~l~~f~ 181 (424)
T 3amj_B 159 PYGHVS--SVATLQKISRDQLVSFH 181 (424)
T ss_dssp GGGCCC--CHHHHHHCCHHHHHHHH
T ss_pred CCCCCC--CHHHHHhCCHHHHHHHH
Confidence 999876 89999999999999986
No 11
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.93 E-value=2.6e-25 Score=215.59 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=167.3
Q ss_pred CCCCcEEEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeee
Q psy8067 60 NDRNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICD 138 (239)
Q Consensus 60 ~~~~~~~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~ 138 (239)
.+..++.++|+||++|++.+.+ .+.+.+.+++++|+..|+.+..|++|+++||++.|+.+|+...++.+.+++.|+.+|
T Consensus 31 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 110 (990)
T 3cww_A 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSN 110 (990)
T ss_dssp CCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCcee
Confidence 4567899999999999998765 589999999999999999999999999999999999999665799999999999999
Q ss_pred eeeccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCC
Q psy8067 139 CLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGL 218 (239)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~ 218 (239)
++++.+++.|.+.++.++++.+|.++++++.+|.|++++|++++..+.++++...++| ...+.+.+...+|++|||++
T Consensus 111 A~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~--~~~~~~~~~~~~~~~~py~~ 188 (990)
T 3cww_A 111 AFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMND--AWRLFQLEKATGNPKHPFSK 188 (990)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHTSCTTSGGGC
T ss_pred EEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHhcCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999888877 77888888999999999999
Q ss_pred CCCCChhhhcCC-------CHHHHhccC
Q psy8067 219 PKLCPPASIGVI-------NNNTLFTYL 239 (239)
Q Consensus 219 ~~~g~~~~l~~i-------~~e~l~~~y 239 (239)
+..|++++|..+ +.+++++||
T Consensus 189 ~~~G~~~~l~~~~~~~~~~~~~~l~~f~ 216 (990)
T 3cww_A 189 FGTGNKYTLETRPNQEGIDVRQELLKFH 216 (990)
T ss_dssp CCSCCHHHHTHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCHHHHhhccccccchHHHHHHHHH
Confidence 999999999999 999999987
No 12
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.92 E-value=3.2e-24 Score=185.01 Aligned_cols=159 Identities=20% Similarity=0.344 Sum_probs=149.2
Q ss_pred CEEEEeeCCCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeeeccceeEEEEEe
Q psy8067 73 LRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASA 152 (239)
Q Consensus 73 ~~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~ 152 (239)
+||++.+.+.+.+.+.+++++|++.++ ..|++|+++||+++|++++ +..++.+.++..|++++++++.+++.|++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~-~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~ 77 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTR-SALKLVRESELLGGTFKSTLDREYITLKATF 77 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSS-CHHHHHHHHHHHTCEEEEEECSSCEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCC-CHHHHHHHHHHhCCeEEEEEccceEEEEEEe
Confidence 578888877889999999999998863 6899999999999999998 8899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHHHH-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhhhcCCC
Q psy8067 153 ATSGLDTVMKILGDVVLRPKFSKEEIN-MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVIN 231 (239)
Q Consensus 153 ~~~~le~~l~ll~~~~~~P~f~~~~~~-~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~l~~i~ 231 (239)
++++++.+|+++++++++|.|++++|+ ++|+.+.++++...++| ...+.+.+.+.+|+ |||+++.. .++|++++
T Consensus 78 ~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p--~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it 152 (352)
T 3cx5_B 78 LKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCP--VKSAEDQLYAITFR-KGLGNPLL--YDGVERVS 152 (352)
T ss_dssp EGGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCC
T ss_pred chhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhC-CCCCCccc--hhhhccCC
Confidence 999999999999999999999999998 99999999999988888 88999999999997 99998873 78999999
Q ss_pred HHHHhccC
Q psy8067 232 NNTLFTYL 239 (239)
Q Consensus 232 ~e~l~~~y 239 (239)
.+++++||
T Consensus 153 ~~~l~~f~ 160 (352)
T 3cx5_B 153 LQDIKDFA 160 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
No 13
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.91 E-value=6.3e-24 Score=187.32 Aligned_cols=166 Identities=22% Similarity=0.381 Sum_probs=151.1
Q ss_pred EEEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeeecc
Q psy8067 65 QVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSR 143 (239)
Q Consensus 65 ~~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~~~ 143 (239)
+.++|+||++|++++.+ .+.+.+.+++++|+..++++..|++|+++||++.|+.+ ..++..|++++++++.
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--------~~~~~~G~~~na~t~~ 73 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--------AVAAKEGLALSSNISR 73 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--------HHHHHTTCEEEEEECS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--------ccHHHcCCeeeeeecC
Confidence 45799999999999876 48999999999999999998999999999999998643 2468899999999999
Q ss_pred ceeEEEEEecCCCHHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCC
Q psy8067 144 DTFIYAASAATSGLDTVMKILGDVVLRPK---FSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220 (239)
Q Consensus 144 ~~~~~~~~~~~~~le~~l~ll~~~~~~P~---f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~ 220 (239)
+.+.|++++++++++.+|+++.+++.+|. |++++|+++|+.+..++++..++|. ...+.+.+.+.+|++||++++.
T Consensus 74 ~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ 152 (431)
T 3cx5_A 74 DFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDH-PNRVLEHLHSTAFQNTPLSLPT 152 (431)
T ss_dssp SCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHTTTSGGGSCT
T ss_pred CeEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCch-hHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999 9999999999999999998766540 4577899999999999999998
Q ss_pred CCChhhhcCCCHHHHhccC
Q psy8067 221 LCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 221 ~g~~~~l~~i~~e~l~~~y 239 (239)
.|+.++|++++.+++++||
T Consensus 153 ~g~~~~l~~~t~~~l~~f~ 171 (431)
T 3cx5_A 153 RGTLESLENLVVADLESFA 171 (431)
T ss_dssp TCCHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHhhCCHHHHHHHH
Confidence 9999999999999999986
No 14
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.91 E-value=2.9e-23 Score=182.55 Aligned_cols=168 Identities=14% Similarity=0.205 Sum_probs=155.3
Q ss_pred EEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHh-CCeeeeeeccc
Q psy8067 67 TTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKI-GGICDCLSSRD 144 (239)
Q Consensus 67 ~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~-g~~~~~~~~~~ 144 (239)
++|+||++|++++.+ .+.+.+.+.++.|+..++ .|++|+++||++.|+.++++..++.+.++.. |++++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 899999999999875 589999999999986544 6999999999999999987888999999998 99999999988
Q ss_pred e----eEEEEEecCC-------CHHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q psy8067 145 T----FIYAASAATS-------GLDTVMKILGDVVLRPK-----FSKEEINMARQTIQFELENYQMRPEQETLLMDMIHA 208 (239)
Q Consensus 145 ~----~~~~~~~~~~-------~le~~l~ll~~~~~~P~-----f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~ 208 (239)
. ..+++++.++ +++.+|+++++++++|. |++++|+++|+.+.+++++..++| ...+.+.+.+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p--~~~~~~~~~~ 160 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDK--QTYASLALQS 160 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSH--HHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCH--HHHHHHHHHH
Confidence 8 4888888886 69999999999999999 999999999999999999988888 8899999999
Q ss_pred Hhc-CCCCCCCCCCCChhhhcCCCHHHHhccC
Q psy8067 209 AAY-KDNTLGLPKLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 209 ~~~-~~~p~~~~~~g~~~~l~~i~~e~l~~~y 239 (239)
.+| ++||++++..|+.++|++++.+++++||
T Consensus 161 ~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~ 192 (425)
T 3d3y_A 161 VYFNQSEDQKIPSFGTVAALAEETAASLAAYY 192 (425)
T ss_dssp HHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHH
T ss_pred HhccCCCCccCCCCCCHHHHHhCCHHHHHHHH
Confidence 999 7899999989999999999999999986
No 15
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.89 E-value=3.4e-23 Score=187.06 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=145.8
Q ss_pred CCCcEEEEcCCCCEEEEeeCC---CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHH----Hh
Q psy8067 61 DRNTQVTTLPNGLRVASENRF---GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLE----KI 133 (239)
Q Consensus 61 ~~~~~~~~L~NG~~v~~~~~~---~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~----~~ 133 (239)
++.++.++|+||++|++.+++ .+.+.+.+++++|+..|+++..|++|+++||++.|+.++ +..++.+.++ ..
T Consensus 23 dp~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~-~~~~~~~~~~~~~~~~ 101 (492)
T 3go9_A 23 DPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASF-TPAQLQSLWQQGIDNE 101 (492)
T ss_dssp CTTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTC-CHHHHHHHHHTCSCSS
T ss_pred CCCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhc
Confidence 567899999999999987643 468999999999999999999999999999999999998 7789998766 46
Q ss_pred CCeeeeeeccceeEEEEEecC---CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q psy8067 134 GGICDCLSSRDTFIYAASAAT---SGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAA 210 (239)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~---~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~ 210 (239)
|++++++++.+++.|.++++. ++++.+|+++.+++.+|.|++++|+++|..+.++++...++| .... +...+
T Consensus 102 G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~--~~~~---~~~~~ 176 (492)
T 3go9_A 102 RPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNI--QEPW---WRYRL 176 (492)
T ss_dssp SCCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCT--TCHH---HHHHT
T ss_pred CCCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccch--hhHH---HHHHh
Confidence 999999999999999999998 679999999999999999999999999987766666555555 3222 23456
Q ss_pred cCCCCCCCCCCCChhhhcCCCHHHHhccC
Q psy8067 211 YKDNTLGLPKLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 211 ~~~~p~~~~~~g~~~~l~~i~~e~l~~~y 239 (239)
++.++++++..+ +.|++++.+++++||
T Consensus 177 ~~~~~~~~~~~~--~~i~~it~~dL~~fy 203 (492)
T 3go9_A 177 KGSSLIGHDPGQ--PVTQPVDVEKLKQFY 203 (492)
T ss_dssp TTSTTTTCCTTC--CCCSSCCHHHHHHHH
T ss_pred ccCCcccCCCch--hhhhcCCHHHHHHHH
Confidence 777777776543 689999999999987
No 16
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.87 E-value=4.2e-22 Score=193.28 Aligned_cols=172 Identities=15% Similarity=0.222 Sum_probs=152.0
Q ss_pred CCcEEEEcCCCCEEEEeeCCCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHH-hCCeeeee
Q psy8067 62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK-IGGICDCL 140 (239)
Q Consensus 62 ~~~~~~~L~NG~~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~-~g~~~~~~ 140 (239)
..++..+|+||++|++.+.++... ++..|+..++.+..|++|+++||+++|+.+|+....+.+.+.+ .|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 345667899999999988765333 3566778889899999999999999999999654446676665 59999999
Q ss_pred eccceeEEEEEec-CCCHHHHHHHHHHhhhCCCC--CHHHHHHH---------------HHHHHHHHHHHhcCCchHHHH
Q psy8067 141 SSRDTFIYAASAA-TSGLDTVMKILGDVVLRPKF--SKEEINMA---------------RQTIQFELENYQMRPEQETLL 202 (239)
Q Consensus 141 ~~~~~~~~~~~~~-~~~le~~l~ll~~~~~~P~f--~~~~~~~~---------------k~~~~~~l~~~~~~p~~~~~~ 202 (239)
++.|++.|.+.+. .++++.+|.++.+++.+|.| ++++|+++ |..+.+|++...++| ..++
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p--~~~~ 189 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQP--DNIL 189 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSH--HHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCH--HHHH
Confidence 9999999999875 57999999999999999999 99999999 889999999988877 8999
Q ss_pred HHHHHHHhcCCCCCCCCCCCChhhhcCCCHHHHhccC
Q psy8067 203 MDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 203 ~~~l~~~~~~~~p~~~~~~g~~~~l~~i~~e~l~~~y 239 (239)
.+.+.+.+|++|||+++..|++++|.+++.+++++||
T Consensus 190 ~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~ 226 (995)
T 2fge_A 190 GRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFH 226 (995)
T ss_dssp HHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHH
Confidence 9999999999999999999999999999999999997
No 17
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.86 E-value=5.3e-22 Score=194.11 Aligned_cols=174 Identities=15% Similarity=0.125 Sum_probs=151.0
Q ss_pred CCCcEEEEcCCCCEEEEeeCCCC-eEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHH--hCCee
Q psy8067 61 DRNTQVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK--IGGIC 137 (239)
Q Consensus 61 ~~~~~~~~L~NG~~v~~~~~~~~-~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~--~g~~~ 137 (239)
...++...|+||++|++.+++++ .+.+ .+..|...++.+..|++|+++||+++|+.+| +..++...+.. .|+.+
T Consensus 84 ~~~~~~~~l~nGl~vl~i~~~~~~~~~~--~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~-p~~e~~~~l~~~slG~~l 160 (1193)
T 3s5m_A 84 MTYTVYQHKKAKTQVISLGTNDPLDVEQ--AFAFYVKTLTHSGKGIPHILEHSVLSGSKNY-NYKNSIGLLEKGTLHTHL 160 (1193)
T ss_dssp EEEEEEEETTTCCEEEEEEECCTTCCCE--EEEEEEECCCSSSSCHHHHHHHHTTSCBTTB-CCTTHHHHHHHSCCEEEE
T ss_pred ccceEEEECCCCCEEEEEECCCCCeEEE--EEEEEECCCCCCCchHHHHHHHHHhCCCCCC-ChhhHHHHHHHhccCceE
Confidence 35567789999999999876543 2222 2334555688889999999999999999999 45677777877 79999
Q ss_pred eeeeccceeEEEEEecC-CCHHHHHHHHHHhhhCCCCCHHH--HHHH-----------------------------HHHH
Q psy8067 138 DCLSSRDTFIYAASAAT-SGLDTVMKILGDVVLRPKFSKEE--INMA-----------------------------RQTI 185 (239)
Q Consensus 138 ~~~~~~~~~~~~~~~~~-~~le~~l~ll~~~~~~P~f~~~~--~~~~-----------------------------k~~~ 185 (239)
|++++.|++.|.+++.+ ++++.+|.++.+.+.+|.+++++ |.++ |..+
T Consensus 161 NA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV 240 (1193)
T 3s5m_A 161 NAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIV 240 (1193)
T ss_dssp EEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHH
T ss_pred EeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHH
Confidence 99999999999999887 99999999999999999998887 8776 5688
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhhhcCCCHHHHhccC
Q psy8067 186 QFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 186 ~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~l~~i~~e~l~~~y 239 (239)
.++++...++| ..++.+.+.+.+|++|||+++..|++++|.+++++++++||
T Consensus 241 ~~E~k~~~~~p--~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~ 292 (1193)
T 3s5m_A 241 YNEMKGALSSP--LEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFY 292 (1193)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHH
T ss_pred HHHHHHhhCCH--HHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHH
Confidence 99999998888 89999999999999999999999999999999999999997
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.53 E-value=5.2e-14 Score=135.62 Aligned_cols=164 Identities=9% Similarity=0.040 Sum_probs=135.9
Q ss_pred cEEEEcCCCCEEEEeeCCC----CeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeee
Q psy8067 64 TQVTTLPNGLRVASENRFG----SFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139 (239)
Q Consensus 64 ~~~~~L~NG~~v~~~~~~~----~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~ 139 (239)
.+.++|+||++|++++++. +...+.+.+.+|...++.+..++++++..++..|+..+ .+...+++.++ +.
T Consensus 500 p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~----~~~~~l~G~~~--~~ 573 (939)
T 1q2l_A 500 PELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL----SNQASVGGISF--ST 573 (939)
T ss_dssp CEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTEEE--EE
T ss_pred CEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH----hhHHHHcCcEE--EE
Confidence 3678999999999998762 38999999888877666556799999999998887654 55566666554 44
Q ss_pred eeccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhcCCCCCCC
Q psy8067 140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQM-RPEQETLLMDMIHAAAYKDNTLGL 218 (239)
Q Consensus 140 ~~~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~-~p~~~~~~~~~l~~~~~~~~p~~~ 218 (239)
.. .+...+++++.+++++.+|+++++.+++|.|++++|+++|++++.++++... +| ...+.+.+...+|++ + .
T Consensus 574 ~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p--~~~a~~~l~~~l~~~--~-~ 647 (939)
T 1q2l_A 574 NA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKA--FEQAIMPAQMLSQVP--Y-F 647 (939)
T ss_dssp EE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCH--HHHHHHHHHHTTSSS--C-C
T ss_pred ee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcCh--HHHHHHHHHHHhcCC--C-C
Confidence 55 7788899999999999999999999999999999999999999999999854 45 777889999989874 2 3
Q ss_pred CCCCChhhhcCCCHHHHhccC
Q psy8067 219 PKLCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 219 ~~~g~~~~l~~i~~e~l~~~y 239 (239)
+..++.++|++++.+++++||
T Consensus 648 ~~~~~~~~l~~it~~~l~~f~ 668 (939)
T 1q2l_A 648 SRDERRKILPSITLKEVLAYR 668 (939)
T ss_dssp CHHHHHHHGGGCCHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHH
Confidence 444678999999999999985
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.47 E-value=2.1e-13 Score=132.37 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=132.0
Q ss_pred CCcEEEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHh-cccCCCCCHHHHHHHHHHhCCeeee
Q psy8067 62 RNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAF-NSTSEYVNKDAIAQSLEKIGGICDC 139 (239)
Q Consensus 62 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~-~G~~~~~s~~~l~~~l~~~g~~~~~ 139 (239)
..++. .+.||++|+++++. .+++.+.+.+++|+. +.+..+..+++..++. .|++++ +..+|.+.++++.+.+++
T Consensus 552 ~~~~~-~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~-s~~el~~~l~~~~ggl~~ 627 (995)
T 2fge_A 552 VPTEV-GDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDL-TFVQLNQLIGRKTGGISV 627 (995)
T ss_dssp CCCEE-EESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSS-CHHHHHHHHHHHSSEEEE
T ss_pred CCcee-eecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCC-CHHHHHHHHHHhcCceEe
Confidence 34443 45899999998865 589999999999886 3345677777766666 599998 899999999977666666
Q ss_pred -----eecc-----ceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q psy8067 140 -----LSSR-----DTFIYAASAATSGLDTVMKILGDVVLRPKFSKE-EINMARQTIQFELENYQMRPEQETLLMDMIHA 208 (239)
Q Consensus 140 -----~~~~-----~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~-~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~ 208 (239)
.++. +.+.+++++.+++++.+|+++.+++++|+|+++ .|++++++++.++++...++ +..++.+.+..
T Consensus 628 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~-~~~~A~~~~~~ 706 (995)
T 2fge_A 628 YPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGS-GHGIAAARMDA 706 (995)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHH
T ss_pred eccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhcc-HHHHHHHHHHH
Confidence 5555 889999999999999999999999999999999 99999999999999987543 15556777766
Q ss_pred HhcCCCCCCCCC-----CCCh--------hhhcCCCHHHHhccC
Q psy8067 209 AAYKDNTLGLPK-----LCPP--------ASIGVINNNTLFTYL 239 (239)
Q Consensus 209 ~~~~~~p~~~~~-----~g~~--------~~l~~i~~e~l~~~y 239 (239)
.++++++++... .+.. ++++.+ .++|++||
T Consensus 707 ~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~ 749 (995)
T 2fge_A 707 MLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIR 749 (995)
T ss_dssp TTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHH
T ss_pred hCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHH
Confidence 544455543211 1111 557788 88888775
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.38 E-value=1.2e-11 Score=119.89 Aligned_cols=164 Identities=11% Similarity=0.057 Sum_probs=135.4
Q ss_pred EEEEcCCCCEEEEeeCC---CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeee
Q psy8067 65 QVTTLPNGLRVASENRF---GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLS 141 (239)
Q Consensus 65 ~~~~L~NG~~v~~~~~~---~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~ 141 (239)
..++++||++|++++++ .|...+.+.+.++...++.+..+++.++..++..+ + +..++.+.+. |.++++.+
T Consensus 520 ~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~-~~~~~~~~l~--G~~~~~~~ 593 (990)
T 3cww_A 520 ALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---L-NEYAYAAELA--GLSYDLQN 593 (990)
T ss_dssp EEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---H-HHHHHHHHHT--TEEEEEEE
T ss_pred eeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---H-HHhhhHHHhC--CeEEEEEE
Confidence 66889999999998765 35777777666555555555567888888887664 3 5567777774 77888888
Q ss_pred ccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhcCCCCCCCCC
Q psy8067 142 SRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQM-RPEQETLLMDMIHAAAYKDNTLGLPK 220 (239)
Q Consensus 142 ~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~-~p~~~~~~~~~l~~~~~~~~p~~~~~ 220 (239)
+.+...+++++..++++.+|+++.+.+++|+|+++.|++++++++..+++... +| ..++.+.+...+++ +++..
T Consensus 594 ~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p--~~~a~~~~~~~l~~-~~~~~-- 668 (990)
T 3cww_A 594 TIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQP--HQHAMYYLRLLMTE-VAWTK-- 668 (990)
T ss_dssp ETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHBS-SCCCH--
T ss_pred cCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCh--HHHHHHHHHHHhCC-CCCCH--
Confidence 88999999999999999999999999999999999999999999999999887 67 88999999998886 55542
Q ss_pred CCChhhhcCCCHHHHhccC
Q psy8067 221 LCPPASIGVINNNTLFTYL 239 (239)
Q Consensus 221 ~g~~~~l~~i~~e~l~~~y 239 (239)
.++.+.|++++.+++.+||
T Consensus 669 ~~~~~~l~~lt~~~l~~~~ 687 (990)
T 3cww_A 669 DELKEALADVTLPRLKAFI 687 (990)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 2468999999999999875
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=98.49 E-value=1e-06 Score=86.73 Aligned_cols=123 Identities=9% Similarity=0.003 Sum_probs=97.6
Q ss_pred CCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeeec------
Q psy8067 70 PNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS------ 142 (239)
Q Consensus 70 ~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~~------ 142 (239)
.||++|++.+.+ ++++.+.+.+..|... .++.+-+..+...+...|++++ |..+|.+.++.+++.++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~-~e~l~yl~Lf~~~L~~lGT~~~-sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT-VDELAYLNLFKTLILENKTNKR-SSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC-HHHHTTHHHHHHHTTTCCBSSS-CHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC-HHHHhhHHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999987654 6899999999988644 2333345555555556799998 999999999999999988874
Q ss_pred ----------cceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHHHhc
Q psy8067 143 ----------RDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEE-INMARQTIQFELENYQM 194 (239)
Q Consensus 143 ----------~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~-~~~~k~~~~~~l~~~~~ 194 (239)
.....+++.+..++++.+|+|+.+++++|+|++.+ +...+.+.++.+++...
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~ 864 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFS 864 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccc
Confidence 23468899999999999999999999999998875 77777777776666443
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=97.70 E-value=0.0011 Score=51.44 Aligned_cols=144 Identities=10% Similarity=0.029 Sum_probs=90.1
Q ss_pred CeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeeec------cceeEEEEEecCC-
Q psy8067 83 SFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS------RDTFIYAASAATS- 155 (239)
Q Consensus 83 ~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~- 155 (239)
+...+.+.+.+....++ +. -...++..++..|. .| .|.+.|..+|...+++.. .....+.+.+.++
T Consensus 23 ~~~~v~~~~~~~~~~~~-d~-~al~vl~~iLggg~---sS--rL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~ 95 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAGSP-DF-VGLDLAATILADTP---SS--RLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGM 95 (197)
T ss_dssp CSCEEEEEEECCCTTST-TH-HHHHHHHHHHHSST---TS--HHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTS
T ss_pred CCceEEEEEecCCCCCC-cH-HHHHHHHHHHcCCC---Cc--hHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCC
Confidence 34445555555444332 22 23334445544332 12 566666656554444332 2345566666666
Q ss_pred CHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhhhcCCCH
Q psy8067 156 GLDTVMKILGDVVLR---PKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINN 232 (239)
Q Consensus 156 ~le~~l~ll~~~~~~---P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~l~~i~~ 232 (239)
+++.+++.+...+.+ -.++++++++.|+.++..+.....++ ...+.......+++ .+... ....+.|+++|.
T Consensus 96 ~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~--~~~a~~l~~~~~~g-~~~~~--~~~~~~i~~vT~ 170 (197)
T 3ih6_A 96 DQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADP--EKVGVALSEAIASG-DWRLF--FLQRDRVREAKL 170 (197)
T ss_dssp CHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSH--HHHHHHHHHHHHTT-CTTHH--HHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHcC-CHHHH--HHHHHHHHhCCH
Confidence 699999988777654 35999999999999999888777766 77777776666664 33111 124688999999
Q ss_pred HHHhcc
Q psy8067 233 NTLFTY 238 (239)
Q Consensus 233 e~l~~~ 238 (239)
+++.++
T Consensus 171 ~dv~~~ 176 (197)
T 3ih6_A 171 DDVQRA 176 (197)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 23
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.04 E-value=0.0064 Score=52.44 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=92.3
Q ss_pred CeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeeecc------ceeEEEEEecCCC
Q psy8067 83 SFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSR------DTFIYAASAATSG 156 (239)
Q Consensus 83 ~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~~~------~~~~~~~~~~~~~ 156 (239)
+...+.+.+.+....++ +. -...++..++..| . .| .|.+.+...|...+++... ....+.+.+.+++
T Consensus 234 ~q~~~~~~~~~~~~~~~-d~-~~l~vl~~iLgg~--~-~s--rL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~ 306 (406)
T 3eoq_A 234 RALYLVALFPGVAYQEE-AR-FPGQVLAHLLGEE--G-SG--RLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPAR 306 (406)
T ss_dssp SSEEEEEEEECCCTTCT-TH-HHHHHHHHHHHCT--T-TS--HHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred cceEEEEEecCCCCCCc-hH-HHHHHHHHHhCCC--c-ch--HHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcch
Confidence 55566666665444333 22 2333445554432 1 13 5666665566555444332 2345666777788
Q ss_pred HHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhhhcCCCHH
Q psy8067 157 LDTVMKILGDVVLR---PKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNN 233 (239)
Q Consensus 157 le~~l~ll~~~~~~---P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~l~~i~~e 233 (239)
.+.+++.+...+.. -.++++++++.|..++..+....+++ ...+.......++++.+.... -..+.|+++|.+
T Consensus 307 ~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~vt~~ 382 (406)
T 3eoq_A 307 KGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETP--MQRLFHLGMEYLYTGRYLSLE--EVKARVQRVTSR 382 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHHHSSCCCHH--HHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhcCCCCCHH--HHHHHHHhCCHH
Confidence 88888888776644 34999999999999999988777766 677777766666654443221 135789999999
Q ss_pred HHhcc
Q psy8067 234 TLFTY 238 (239)
Q Consensus 234 ~l~~~ 238 (239)
++.++
T Consensus 383 dv~~~ 387 (406)
T 3eoq_A 383 EVNAL 387 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 24
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=96.92 E-value=0.013 Score=50.38 Aligned_cols=147 Identities=9% Similarity=0.000 Sum_probs=90.4
Q ss_pred CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHH-hCCeeeeeec----cceeEEEEEecCCC
Q psy8067 82 GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK-IGGICDCLSS----RDTFIYAASAATSG 156 (239)
Q Consensus 82 ~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~-~g~~~~~~~~----~~~~~~~~~~~~~~ 156 (239)
.+...+.+.+.++.....++ .....++..++..| . + ..|.+.+.. .|...+++.+ .....+.+.+.+++
T Consensus 252 ~~~~~v~~~~~~~~~~~~~~-~~~~~vl~~iLg~~--~--~-s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~ 325 (425)
T 3d3y_A 252 LAQSKLNLAYNTDIYYGDSY-YFALQVFNGIFGGF--P--H-SKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKN 325 (425)
T ss_dssp CSSEEEEEEEECCCCTTSTT-HHHHHHHHHHHTTS--T--T-SHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGG
T ss_pred ccccEEEEEeecCCCCCCch-HHHHHHHHHHhCCC--h--h-hHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhh
Confidence 34555666666543222222 23444455555322 2 1 256677764 3554444332 23455666777788
Q ss_pred HHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhhhcCCCHH
Q psy8067 157 LDTVMKILGDVVL---RPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNN 233 (239)
Q Consensus 157 le~~l~ll~~~~~---~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~l~~i~~e 233 (239)
++.+++.+...+. +-.++++++++.|..++..+.....++ ...+.......++++.+.. ..-..+.|+++|.+
T Consensus 326 ~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~vt~e 401 (425)
T 3d3y_A 326 RNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNA--GAWLEKEYLNELMPQTMLT--AEEWIARINAVTIP 401 (425)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCH--HHHHHHHHHHHHSTTSCCC--HHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCH--HHHHHHHHHHHhhcCCCCC--HHHHHHHHHhCCHH
Confidence 8888887765553 345999999999999999888776666 6677766666666233322 11235789999999
Q ss_pred HHhcc
Q psy8067 234 TLFTY 238 (239)
Q Consensus 234 ~l~~~ 238 (239)
++.++
T Consensus 402 dv~~~ 406 (425)
T 3d3y_A 402 EIQEV 406 (425)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 25
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=96.86 E-value=0.013 Score=50.61 Aligned_cols=156 Identities=9% Similarity=0.014 Sum_probs=89.9
Q ss_pred EEEEeeCCCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhccc------CCCCCHHHHHHHHHHhCCeeeeeec-----
Q psy8067 74 RVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNST------SEYVNKDAIAQSLEKIGGICDCLSS----- 142 (239)
Q Consensus 74 ~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~------~~~~s~~~l~~~l~~~g~~~~~~~~----- 142 (239)
++.+...+.+...+.+.+.+....+ ++ .....++..++..|. +.+.+ .|.+.+...|...+++..
T Consensus 222 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~~~vl~~iL~~~~~~~~~~~~~~s--~L~~~lRe~gl~y~v~~~~~~~~ 297 (431)
T 3cx5_A 222 EVRLRDDTLPKAWISLAVEGEPVNS-PN-YFVAKLAAQIFGSYNAFEPASRLQGI--KLLDNIQEYQLCDNFNHFSLSYK 297 (431)
T ss_dssp EEEEECTTSSSEEEEEEEECCCTTC-TT-HHHHHHHHHHHCEEETTCTTGGGSSC--THHHHHHTTTCCSEEEEEEEECS
T ss_pred eEEEcCCCCCceEEEEEeecCCCCC-cc-HHHHHHHHHHcCCCccCCCCcccccc--HHHHHHHhcCceeeEeEeecccC
Confidence 3433333345566666666544332 22 233344555554321 11212 455555555554444332
Q ss_pred -cceeEEEEEecC-CCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHHHH--HhcCCchHHHHHHHHHHHh-cCCCC
Q psy8067 143 -RDTFIYAASAAT-SGLDTVMKILGDVVLRP--KFSKEEINMARQTIQFELEN--YQMRPEQETLLMDMIHAAA-YKDNT 215 (239)
Q Consensus 143 -~~~~~~~~~~~~-~~le~~l~ll~~~~~~P--~f~~~~~~~~k~~~~~~l~~--~~~~p~~~~~~~~~l~~~~-~~~~p 215 (239)
.....+.+.+.+ ++++.+++.+...+..- .++++++++.|..+...+.. ...++ ...+.......+ ++. +
T Consensus 298 ~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~-~ 374 (431)
T 3cx5_A 298 DSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNP--VNDANLLGAEVLIKGS-K 374 (431)
T ss_dssp SCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCH--HHHHHHHHHHHHHHSS-C
T ss_pred CCceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCH--HHHHHHHHHHHHhcCC-C
Confidence 233456667777 88888877776544321 59999999999999988887 55555 666666555544 453 3
Q ss_pred CCCCCCCChhhhcCCCHHHHhcc
Q psy8067 216 LGLPKLCPPASIGVINNNTLFTY 238 (239)
Q Consensus 216 ~~~~~~g~~~~l~~i~~e~l~~~ 238 (239)
... .-..+.|+++|.+++.++
T Consensus 375 ~~~--~~~~~~i~~vt~~dv~~~ 395 (431)
T 3cx5_A 375 LSL--GEAFKKIDAITVKDVKAW 395 (431)
T ss_dssp CCH--HHHHHHHHHCCHHHHHHH
T ss_pred CCH--HHHHHHHhcCCHHHHHHH
Confidence 221 123578999999999875
No 26
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=96.81 E-value=0.016 Score=50.05 Aligned_cols=148 Identities=8% Similarity=0.003 Sum_probs=90.4
Q ss_pred CCCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHH-hCCeeeeeec------cceeEEEEEe
Q psy8067 80 RFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK-IGGICDCLSS------RDTFIYAASA 152 (239)
Q Consensus 80 ~~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~-~g~~~~~~~~------~~~~~~~~~~ 152 (239)
.+.+...+.+.+.+....+ ++ .....++..++..| ..| .|.+.+.. .|...+++.. .....+...+
T Consensus 230 ~~~~q~~v~~~~~~~~~~~-~d-~~~l~vl~~iLgg~---~~s--rL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~ 302 (421)
T 3hdi_A 230 KETEQAHLCLGYPGLPIGD-KD-VYALVLLNNVLGGS---MSS--RLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGT 302 (421)
T ss_dssp CCCSEEEEEEEEECCCTTC-TT-HHHHHHHHHHHTSS---SSS--HHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEE
T ss_pred CCCCceEEEEEEecCCCCC-ch-HHHHHHHHHHhCCC---ccc--HHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEe
Confidence 3445666677666544332 22 22333444454322 213 56666754 4554444332 2344566677
Q ss_pred cCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhhhcC
Q psy8067 153 ATSGLDTVMKILGDVVL---RPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGV 229 (239)
Q Consensus 153 ~~~~le~~l~ll~~~~~---~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~l~~ 229 (239)
.+++++.+++.+.+.+. +-.++++++++.|..++..+.....++ ...+.......++.+.+.... -..+.|++
T Consensus 303 ~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~ 378 (421)
T 3hdi_A 303 GHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLEST--NSRMSRNGKNELLLKKHRSLD--EMIEQINA 378 (421)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTSCCCCHH--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCH--HHHHHHHHHHHHhcCCCCCHH--HHHHHHHc
Confidence 77888888888876654 446999999999999998888766665 666665555555543332211 13578999
Q ss_pred CCHHHHhcc
Q psy8067 230 INNNTLFTY 238 (239)
Q Consensus 230 i~~e~l~~~ 238 (239)
+|.+++.++
T Consensus 379 vt~~dv~~~ 387 (421)
T 3hdi_A 379 VQKQDVSRL 387 (421)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999998764
No 27
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=96.66 E-value=0.049 Score=46.90 Aligned_cols=148 Identities=9% Similarity=0.009 Sum_probs=89.3
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHH-hCCeeeeeecc------ceeEEEEEec
Q psy8067 81 FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK-IGGICDCLSSR------DTFIYAASAA 153 (239)
Q Consensus 81 ~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~-~g~~~~~~~~~------~~~~~~~~~~ 153 (239)
+.+...+.+.+.+..... ++ .....++..++..| .+.+ .|.+.+.. .|...+++.+. ....+.+.+.
T Consensus 239 ~~~~~~v~~~~~~~~~~~-~~-~~~~~vl~~iLg~~--~~~s--rL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~ 312 (424)
T 3amj_B 239 PATQAHIAIGMPTLKRGD-PD-FFPLVVGNYALGGG--GFES--RLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETR 312 (424)
T ss_dssp SSSEEEEEEEEEEEBTTC-TT-HHHHHHHHHHHTTS--GGGS--HHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEE
T ss_pred CCCccEEEeeccCCCCCC-cc-hHHHHHHHHHhCCC--Cccc--hhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeC
Confidence 345566666666533322 22 23334445554322 1212 57777754 55555444322 2345666777
Q ss_pred CCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhhhcCC
Q psy8067 154 TSGLDTVMKILGDVVL---RPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVI 230 (239)
Q Consensus 154 ~~~le~~l~ll~~~~~---~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~l~~i 230 (239)
+++.+.+++.+...+. +-.++++++++.|+.++..+.....++ ...+.......+++. ++.... -..+.|+++
T Consensus 313 ~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~-~~~~~i~~v 388 (424)
T 3amj_B 313 AEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSN--AKILGQVAVIGYYGL-PLDYLD-HYTERVQAV 388 (424)
T ss_dssp STTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSH--HHHHHHHHHHHHTTC-CTTTTT-SHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCH--HHHHHHHHHHHHcCC-ChhHHH-HHHHHHHcC
Confidence 8888888888776665 334999999999999988777655555 666666555555543 332211 136889999
Q ss_pred CHHHHhcc
Q psy8067 231 NNNTLFTY 238 (239)
Q Consensus 231 ~~e~l~~~ 238 (239)
|.+++.++
T Consensus 389 t~~dv~~~ 396 (424)
T 3amj_B 389 TVEQVREA 396 (424)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999865
No 28
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=96.60 E-value=0.057 Score=46.78 Aligned_cols=149 Identities=11% Similarity=0.033 Sum_probs=89.4
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhc-----ccC-CCCCHHHHHHHHH-HhCCeeee--eec----cceeE
Q psy8067 81 FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFN-----STS-EYVNKDAIAQSLE-KIGGICDC--LSS----RDTFI 147 (239)
Q Consensus 81 ~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~-----G~~-~~~s~~~l~~~l~-~~g~~~~~--~~~----~~~~~ 147 (239)
+.+...+.+.+.+....+ ++ .....++..++.. |.+ .+. ..|.+.+. ..|...++ +.. .....
T Consensus 243 ~~~~~~v~~~~~~~~~~~-~~-~~~l~vl~~iLg~~~r~~~~g~~~~--s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 243 TLPTTHIAIALEGVSWSA-PD-YFVALATQAIVGNWDRAIGTGTNSP--SPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp TCSEEEEEEEEECCCTTC-TT-HHHHHHHHHHHCEEETTTBCSSSSC--CHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCCCCC-cc-HHHHHHHHHHhCCCcccCCCCCCcc--cHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 345667777776654322 22 2333345555532 111 222 35777776 44543332 221 23445
Q ss_pred EEEEec--CCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH-hcCCCCCCCCCC
Q psy8067 148 YAASAA--TSGLDTVMKILGDVV---LRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAA-AYKDNTLGLPKL 221 (239)
Q Consensus 148 ~~~~~~--~~~le~~l~ll~~~~---~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~-~~~~~p~~~~~~ 221 (239)
+.+.+. +++++.+++.+...+ .+..++++++++.|..++..+.....++ ...+....... .++. +....
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~-~~~~~-- 393 (443)
T 1hr6_B 319 MYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGS--TAIVEDIGRQVVTTGK-RLSPE-- 393 (443)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSH--HHHHHHHHHHHHHHSS-CCCHH--
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCH--HHHHHHHHHHHHhcCC-cCCHH--
Confidence 666677 789988888887655 4455999999999999998887665555 55555555554 3443 32211
Q ss_pred CChhhhcCCCHHHHhcc
Q psy8067 222 CPPASIGVINNNTLFTY 238 (239)
Q Consensus 222 g~~~~l~~i~~e~l~~~ 238 (239)
-..+.|+++|.++++++
T Consensus 394 ~~~~~i~~vt~~dv~~~ 410 (443)
T 1hr6_B 394 EVFEQVDKITKDDIIMW 410 (443)
T ss_dssp HHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 13578999999998764
No 29
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=96.53 E-value=0.05 Score=47.00 Aligned_cols=150 Identities=11% Similarity=0.055 Sum_probs=89.9
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhccc-----CCCCCHHHHHHHHH-HhCCeeeeeec----c--ceeEE
Q psy8067 81 FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNST-----SEYVNKDAIAQSLE-KIGGICDCLSS----R--DTFIY 148 (239)
Q Consensus 81 ~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~-----~~~~s~~~l~~~l~-~~g~~~~~~~~----~--~~~~~ 148 (239)
+.+...+.+.+.+..... ++ .....++..++..|. +.+. ..|.+.+. +.|...+++.+ . ....+
T Consensus 249 ~~~~~~v~~~~~~~~~~~-~~-~~~~~ll~~iLg~~~~~~~~~g~~--s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i 324 (439)
T 1pp9_B 249 GDSLVHAALVAESAAIGS-AE-ANAFSVLQHVLGAGPHVKRGSNAT--SSLYQAVAKGVHQPFDVSAFNASYSDSGLFGF 324 (439)
T ss_dssp CCSEEEEEEEEECCCTTS-HH-HHHHHHHHHHHCCSCSBTTCCCTT--CHHHHHHHHHCCSCEEEEEEEEEETTEEEEEE
T ss_pred CccceEEEEEecCCCCCc-hH-HHHHHHHHHHhCCCcccCCCCCcc--CHHHHHHHHhcCCceEEEEeeccccccceEEE
Confidence 345566666666544322 22 123334445543221 1222 35676676 44544333332 2 23456
Q ss_pred EEEecCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChh
Q psy8067 149 AASAATSGLDTVMKILGDVVLR---PKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPA 225 (239)
Q Consensus 149 ~~~~~~~~le~~l~ll~~~~~~---P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~ 225 (239)
.+.+.+++++.+++.+...+.. -.++++++++.|..+...+.....++ ...+.......++++.+... .-..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~ 400 (439)
T 1pp9_B 325 YTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESS--EGFLDEVGSQALAAGSYTPP--STVLQ 400 (439)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSH--HHHHHHHHHHHHHHSSCCCH--HHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHhcCCCCCH--HHHHH
Confidence 6667778888888887666543 45999999999999998888766665 66666666666654443321 12357
Q ss_pred hhcCCCHHHHhcc
Q psy8067 226 SIGVINNNTLFTY 238 (239)
Q Consensus 226 ~l~~i~~e~l~~~ 238 (239)
.|+++|.+++.++
T Consensus 401 ~i~~vt~~dv~~~ 413 (439)
T 1pp9_B 401 QIDAVADADVINA 413 (439)
T ss_dssp HHHTCCHHHHHHH
T ss_pred HHhcCCHHHHHHH
Confidence 8999999999875
No 30
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=96.51 E-value=0.061 Score=46.79 Aligned_cols=148 Identities=6% Similarity=-0.034 Sum_probs=87.5
Q ss_pred CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcc------cCCCCCHHHHHHHHHHhCCeeeeeec----c--ceeEEE
Q psy8067 82 GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNS------TSEYVNKDAIAQSLEKIGGICDCLSS----R--DTFIYA 149 (239)
Q Consensus 82 ~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G------~~~~~s~~~l~~~l~~~g~~~~~~~~----~--~~~~~~ 149 (239)
.+...+.+.+.+....++ + .....++..++..+ .+.+.| .|.+.+...|...++... . ....+.
T Consensus 248 ~~~~~v~~~~~~~~~~~~-d-~~al~vl~~iLg~~~~~~~~g~~~~s--rL~~~lr~~glay~~~s~~~~~~~~g~~~i~ 323 (446)
T 1pp9_A 248 LPLAHVAIAVEGPGWAHP-D-NVALQVANAIIGHYDCTYGGGAHLSS--PLASIAATNKLCQSFQTFNICYADTGLLGAH 323 (446)
T ss_dssp SSSEEEEEEEEECCTTCT-H-HHHHHHHHHHHCEEETTCSCGGGCSS--HHHHHHHHHTCCSEEEEEEEECSSCEEEEEE
T ss_pred ccceEEEEEEecCCCCCc-c-HHHHHHHHHHhCCCcccCCCCCCCCC--HHHHHHHhcCCeEEEEEecccCCCCeEEEEE
Confidence 345566666665443332 2 23334455555321 012223 566666666644433322 1 234566
Q ss_pred EEecCCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhh
Q psy8067 150 ASAATSGLDTVMKILGDVV---LRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPAS 226 (239)
Q Consensus 150 ~~~~~~~le~~l~ll~~~~---~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~ 226 (239)
..+.+++++.+++.+...+ .+. ++++++++.|..++..+.....++ ...+.......++.+.+.... -..+.
T Consensus 324 ~~~~~~~~~~~~~~i~~~l~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~--~~~~~ 398 (446)
T 1pp9_A 324 FVCDHMSIDDMMFVLQGQWMRLCTS-ATESEVLRGKNLLRNALVSHLDGT--TPVCEDIGRSLLTYGRRIPLA--EWESR 398 (446)
T ss_dssp EEECTTSHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCSH--HHHHHHHHHHHHHTSSCCCHH--HHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHcCCCCCHH--HHHHH
Confidence 6677788888888876654 334 999999999999999888766666 666666555543333332211 13578
Q ss_pred hcCCCHHHHhcc
Q psy8067 227 IGVINNNTLFTY 238 (239)
Q Consensus 227 l~~i~~e~l~~~ 238 (239)
|+++|.++++++
T Consensus 399 i~~vt~edv~~~ 410 (446)
T 1pp9_A 399 IAEVDARVVREV 410 (446)
T ss_dssp HHTCCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999999998764
No 31
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=96.27 E-value=0.038 Score=47.68 Aligned_cols=147 Identities=7% Similarity=-0.007 Sum_probs=86.9
Q ss_pred CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHh-CCeeeeeecc------ceeEEEEEecC
Q psy8067 82 GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKI-GGICDCLSSR------DTFIYAASAAT 154 (239)
Q Consensus 82 ~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~-g~~~~~~~~~------~~~~~~~~~~~ 154 (239)
.....+.+.+.+.....+ +. ....++..++..| ...+ .|.+.|..+ |...+++.+. ....+.+.+.+
T Consensus 247 ~~~~~v~~~~~~~~~~~~-d~-~~l~vl~~iLg~~--~~~s--~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~ 320 (434)
T 3gwb_A 247 SSQTSLMLAQLGIDRDDP-DY-AAVSLGNQILGGG--GFGT--RLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRA 320 (434)
T ss_dssp SSEEEEEEEEECCBTTCT-TH-HHHHHHHHHHHSS--SSCS--HHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEG
T ss_pred CCceeEEecCcCCCCCCc-ch-HHHHHHHHHhCCC--cccc--hhHHHHHhhcCCcceeeeecccCCCceeEEEEEecch
Confidence 345556665655443332 22 3333444444322 1223 577777654 5444433332 34556677788
Q ss_pred CCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhhhcCCC
Q psy8067 155 SGLDTVMKILGDVVLR---PKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVIN 231 (239)
Q Consensus 155 ~~le~~l~ll~~~~~~---P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~l~~i~ 231 (239)
++.+.+++.+...+.+ -.++++++++.|..++..+.....++ ...+........++... ... .-..+.|+++|
T Consensus 321 ~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~vt 396 (434)
T 3gwb_A 321 EMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASN--ADIVGQLGAMGFYNLPL-SYL-EDFMRQSQELT 396 (434)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCH--HHHHHHHHHHHHTTCCT-THH-HHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCH--HHHHHHHHHHHHcCCCc-cHH-HHHHHHHHhCC
Confidence 8888888888766643 35899999999999998887766665 66666666665665322 110 11357899999
Q ss_pred HHHHhcc
Q psy8067 232 NNTLFTY 238 (239)
Q Consensus 232 ~e~l~~~ 238 (239)
.++++++
T Consensus 397 ~~dv~~~ 403 (434)
T 3gwb_A 397 VEQVKAA 403 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 32
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=96.14 E-value=0.092 Score=46.17 Aligned_cols=149 Identities=9% Similarity=0.029 Sum_probs=88.0
Q ss_pred CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhccc--------CCCCCHHHHHHHHHH-hCCeeeeeec------ccee
Q psy8067 82 GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNST--------SEYVNKDAIAQSLEK-IGGICDCLSS------RDTF 146 (239)
Q Consensus 82 ~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~--------~~~~s~~~l~~~l~~-~g~~~~~~~~------~~~~ 146 (239)
.+...+.+.+.+....++ +. ....++..++-.|. .++ + ..|.+.+.. .|...+++.. ....
T Consensus 241 ~~~~~v~~~~~~~~~~~~-d~-~~l~vl~~iLg~~~~f~~gg~g~~~-~-s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~ 316 (475)
T 1hr6_A 241 PELFHIQIGFEGLPIDHP-DI-YALATLQTLLGGGGSFSAGGPGKGM-Y-SRLYTHVLNQYYFVENCVAFNHSYSDSGIF 316 (475)
T ss_dssp CCCEEEEEEEECCCTTCT-TH-HHHHHHHHHHCEEESSCCSSTTSCT-T-SHHHHHTTTTCSSEEEEEEEEEECSSCEEE
T ss_pred ccceEEEEEEecCCCCCc-cH-HHHHHHHHHhCCCcccccCCCCCCc-C-CHHHHHHHHhcCCeeEEEEeccccCCCceE
Confidence 345566666665444332 22 23334555553221 112 1 356666643 4554333322 2345
Q ss_pred EEEEEecCCCHHHHHHHHHHhhhC------CCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCC
Q psy8067 147 IYAASAATSGLDTVMKILGDVVLR------PKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220 (239)
Q Consensus 147 ~~~~~~~~~~le~~l~ll~~~~~~------P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~ 220 (239)
.+.+.+.+++++.+++.+...+.. -.++++++++.|..++..+.....++ ...+.+.....++.+.+...
T Consensus 317 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~-- 392 (475)
T 1hr6_A 317 GISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESK--LVELEDMGRQVLMHGRKIPV-- 392 (475)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHHHSCCCCH--
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcCCCCCH--
Confidence 666777888898888888766654 24999999999999999888766655 56555555544332333221
Q ss_pred CCChhhhcCCCHHHHhcc
Q psy8067 221 LCPPASIGVINNNTLFTY 238 (239)
Q Consensus 221 ~g~~~~l~~i~~e~l~~~ 238 (239)
.-..+.|+++|.+++.++
T Consensus 393 ~~~~~~i~~vt~~dv~~~ 410 (475)
T 1hr6_A 393 NEMISKIEDLKPDDISRV 410 (475)
T ss_dssp HHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 113578999999999865
No 33
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=95.61 E-value=0.078 Score=46.09 Aligned_cols=110 Identities=7% Similarity=-0.079 Sum_probs=71.0
Q ss_pred HHHHHHH-HhCCeeeeeec-----cc---eeEEEEEecCC-CHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHH
Q psy8067 125 AIAQSLE-KIGGICDCLSS-----RD---TFIYAASAATS-GLDTVMKILGDVVLR---PKFSKEEINMARQTIQFELEN 191 (239)
Q Consensus 125 ~l~~~l~-~~g~~~~~~~~-----~~---~~~~~~~~~~~-~le~~l~ll~~~~~~---P~f~~~~~~~~k~~~~~~l~~ 191 (239)
.|.+.+. .+|...+++.+ .+ ...+++.+.++ +++.+++.+...+.. -.++++++++.|+.++..+..
T Consensus 282 rL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~ 361 (445)
T 3ami_A 282 RMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVY 361 (445)
T ss_dssp HHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5666553 55655444332 22 23445556666 588888877666543 249999999999999998887
Q ss_pred HhcCCchHHHHHHHHHHHhcCCCCCCCCCCCChhhhcCCCHHHHhcc
Q psy8067 192 YQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238 (239)
Q Consensus 192 ~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~~~l~~i~~e~l~~~ 238 (239)
...++ ..++.......+++..+... .-..+.|++++.+++.++
T Consensus 362 ~~~~~--~~~~~~l~~~~~~~~~~~~~--~~~~~~i~~vt~~dv~~~ 404 (445)
T 3ami_A 362 EQDSL--MGQATQIGGLEVLGLSWRDD--DRFYQQLRSVTAAEVKAA 404 (445)
T ss_dssp TTTSH--HHHHHHHHHHHTTTCCTTHH--HHHHHHHHTCCHHHHHHH
T ss_pred HhhCH--HHHHHHHHHHHHcCCChHHH--HHHHHHHHcCCHHHHHHH
Confidence 76655 66666666666665432111 113578999999998764
No 34
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=86.48 E-value=8 Score=33.98 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=57.7
Q ss_pred ceeEEEEEecCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHhcCCCCCC
Q psy8067 144 DTFIYAASAATSGLDTVMKILGDVVLR---PKFSKEEINMARQTIQFELENYQMRP---EQETLLMDMIHAAAYKDNTLG 217 (239)
Q Consensus 144 ~~~~~~~~~~~~~le~~l~ll~~~~~~---P~f~~~~~~~~k~~~~~~l~~~~~~p---~~~~~~~~~l~~~~~~~~p~~ 217 (239)
+...+.+.+.+++++.+++.+...+.. -.++++++++.|..++..+......+ .+..++.+.+.....+ ..+.
T Consensus 328 ~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 406 (492)
T 3go9_A 328 AQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSG-VVDI 406 (492)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHT-CCCB
T ss_pred cceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcC
Confidence 445677777888888888888766543 35999999999999988765442210 1133444444444333 2222
Q ss_pred CCCC--CC-hhhhcCCCHHHHhcc
Q psy8067 218 LPKL--CP-PASIGVINNNTLFTY 238 (239)
Q Consensus 218 ~~~~--g~-~~~l~~i~~e~l~~~ 238 (239)
.+.. -. .+.|+++|.+++.++
T Consensus 407 ~~~~~~~~~~~~i~~vT~edV~~~ 430 (492)
T 3go9_A 407 APEQYQKLRQAFLSGLTLAELNRE 430 (492)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2210 01 134889999998764
No 35
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=44.26 E-value=2.6 Score=20.43 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=9.6
Q ss_pred eEEeeccccCCCC
Q psy8067 21 IQCSHFCSQAKPP 33 (239)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (239)
+||-+||++..-.
T Consensus 1 vqcphfcyeldye 13 (26)
T 1rpq_W 1 VQCPHFCYELDYE 13 (26)
T ss_dssp CCCCTHHHHSSSC
T ss_pred CCCCeeeeecCcc
Confidence 5899999887543
No 36
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=23.30 E-value=79 Score=21.81 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHhcccCCCCCHHHHHHHHHHhCCeeeeeeccceeEEE
Q psy8067 112 LAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYA 149 (239)
Q Consensus 112 ~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~ 149 (239)
+.+.|+-.. ++.++.+.++..|+.+...++.....+-
T Consensus 16 ~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV 52 (113)
T 2cok_A 16 ILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCIS 52 (113)
T ss_dssp EEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEEC
T ss_pred EEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEE
Confidence 346677665 8899999999999999999998765544
No 37
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=23.29 E-value=1.6e+02 Score=21.28 Aligned_cols=46 Identities=4% Similarity=0.081 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCeeeeeeccceeEEEEEecCCCHHHHHHHHHHhhhC
Q psy8067 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLR 170 (239)
Q Consensus 124 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~le~~l~ll~~~~~~ 170 (239)
..+-+.|+..|.++...... ...+++-...+|.+.+++.|.+.|..
T Consensus 113 a~~f~aL~~~~InI~~is~S-e~~is~vv~~~d~~~Av~~Lh~~f~~ 158 (167)
T 2dt9_A 113 AKMFQAVASTGANIEMIATS-EVRISVIIPAEYAEAALRAVHQAFEL 158 (167)
T ss_dssp HHHHHHHHHTTCCCCEEEEC-SSEEEEEEEGGGHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHCCCCEEEEEcc-CCEEEEEEeHHHHHHHHHHHHHHHcC
Confidence 35556777778888655433 34788888889999999999988754
No 38
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=21.67 E-value=1.6e+02 Score=24.12 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHhCCeeeeeec-------cceeEEEEEec--------CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q psy8067 122 NKDAIAQSLEKIGGICDCLSS-------RDTFIYAASAA--------TSGLDTVMKILGDVVLRPKFSKEEINMARQT 184 (239)
Q Consensus 122 s~~~l~~~l~~~g~~~~~~~~-------~~~~~~~~~~~--------~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~ 184 (239)
+..++.+.|...|+.+..... .....++++.. .++++.+++.|...+.+-. +++++++.|+.
T Consensus 323 ~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~ 399 (405)
T 2vi8_A 323 TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG-SEQALEEARQR 399 (405)
T ss_dssp CHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc-ccccHHHHHHH
Confidence 355677777777777765420 01123444433 5677888888877776543 45555554444
Done!