RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8067
(239 letters)
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16).
Length = 149
Score = 141 bits (358), Expect = 1e-42
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 74 RVASE-NRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK 132
RVASE + +G+ ID+GSRYE +G++HFLE +AF T +Y + + + LEK
Sbjct: 1 RVASEHDPPADTSAVGLWIDAGSRYEPDDNNGLAHFLEHMAFKGTKKY-PSEDLEEELEK 59
Query: 133 IGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENY 192
+GG + +SR+ +Y L + L D L P FS E+ R + +E+E
Sbjct: 60 LGGSLNAYTSREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPSEVERERLVVLYEVEAV 119
Query: 193 QMRPEQETLLMDMIHAAAYKDNTLGLPKLCP 223
P+ +L+D +HAAAY+ LG L P
Sbjct: 120 DAEPQA--VLLDNLHAAAYRGTPLGRSLLGP 148
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function
prediction only].
Length = 438
Score = 122 bits (308), Expect = 1e-32
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 4/169 (2%)
Query: 60 NDRNTQVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTS 118
QV TLPNGLRV + + ++ V + +GSR E +G++HFLE +AF T+
Sbjct: 13 ALPGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTT 72
Query: 119 EYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEI 178
+ + +A++ EK+GG + +S D +Y S LD + +L D++L P F +EE+
Sbjct: 73 GLPSAE-LAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEV 131
Query: 179 NMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASI 227
+ I E+ Q P+ L + + A Y ++ LG P L SI
Sbjct: 132 EREKGVILEEIRMRQDDPDD--LAFERLLEALYGNHPLGRPILGTEESI 178
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and is
thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 35.6 bits (82), Expect = 0.017
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 68 TLPNGLRVA-SENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAI 126
TLPNGLRV + + +GS E G++HFLE L F + D +
Sbjct: 4 TLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRL 63
Query: 127 AQSLEKIGGICD---CLSSRDTFI-YAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
+++ GG + + F A+A +GL L D++ RP + E+ R
Sbjct: 64 MPWVQRQGGQVNATTLERTTAFFFELPAAALAAGLAR----LCDMLARPLLTAEDQQRER 119
Query: 183 QTIQFELENYQMRPEQETLLMD 204
+ ++ E Y L +
Sbjct: 120 EVLEAE---YIAWQNDADTLRE 138
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification, protein
turnover, chaperones].
Length = 937
Score = 35.8 bits (83), Expect = 0.019
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 12/153 (7%)
Query: 61 DRNTQVTTLPNGLR---VASENRFGSFCTIGVIIDSGSRYEQP--YPSGVSHFLEKLAFN 115
DR + LPNGLR V+ S + V + S ++ P YP G++HFLE + F
Sbjct: 21 DRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGS---FDDPEEYP-GLAHFLEHMLFM 76
Query: 116 STSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSK 175
+ +Y ++ ++ L K GG + ++ + + L+ + D + P F+K
Sbjct: 77 GSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNK 136
Query: 176 EEINMARQTIQFELENYQMRPEQETLLMDMIHA 208
E ++ R + E + M + M + A
Sbjct: 137 EALDRERNAVNSE---FTMNLTSDGWRMYQVQA 166
>gnl|CDD|227313 COG4980, GvpP, Gas vesicle protein [General function prediction
only].
Length = 115
Score = 31.6 bits (72), Expect = 0.13
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 144 DTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQET 200
D + A + +T+ G++ K KE+I + ++ E+E+ Q ET
Sbjct: 54 DILMIADKLSKESAETLKDQGGEIKESVKKWKEDIQPEIERLKSEIEDLQEAISDET 110
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 171 PKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAA--AYKDNTLGLPKL 221
F EE+ AR+ I+ ELE + + ++ A + L LP L
Sbjct: 257 EDFDDEELEEARKLIEAELEKLKGEMGHQEESLEEFDEAWSELNEQVLFLPGL 309
>gnl|CDD|221378 pfam12013, DUF3505, Protein of unknown function (DUF3505). This
family of proteins is functionally uncharacterized. This
protein is found in eukaryotes. Proteins in this family
are typically between 247 to 1018 amino acids in length.
This region contains two segments that are likely to be
C2H2 zinc binding domains.
Length = 108
Score = 28.5 bits (64), Expect = 1.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 33 PPPSFQQPPLSTPLPGLPKVH--YSCVKDNDRNTQVTTLPNGLR 74
P LS P+PGLP V+ Y C +D +T +R
Sbjct: 58 PEAVQWPSALSPPIPGLP-VYDGYRCQRDPPGCPYITRSLKTMR 100
>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the AMPA receptor. N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the AMPA
(alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid) receptor, a member of the glutamate-receptor ion
channels (iGluRs). AMPA receptors are the major
mediators of excitatory synaptic transmission in the
central nervous system. While this N-terminal domain
belongs to the periplasmic-binding fold type I
superfamily, the glutamate-binding domain of the iGluR
is structurally homologous to the periplasmic-binding
fold type II. The LIVBP-like domain of iGluRs is thought
to play a role in the initial assembly of iGluR
subunits, but it is not well understood how this domain
is arranged and functions in intact iGluR. AMPA
receptors consist of four types of subunits (GluR1,
GluR2, GluR3, and GluR4) which combine to form a
tetramer and play an important roles in mediating the
rapid excitatory synaptic current.
Length = 382
Score = 29.6 bits (67), Expect = 1.5
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 26/133 (19%)
Query: 87 IGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSE----------YVNKDAIAQSLEKIGGI 136
IG + D E S F ++ ++T+ +V+ + S I
Sbjct: 2 IGGLFDVDEDQEY------SAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAI 55
Query: 137 CDCLSSRDTFIYAASAATSGLDTVMKILGDV---VLRPKFSKEEINMARQTIQFELENYQ 193
C LS R F S S ++T+ + + P F ++ QF L Q
Sbjct: 56 CSQLS-RGVFAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDL---DDGNQFVL---Q 108
Query: 194 MRPEQETLLMDMI 206
MRP L+D+I
Sbjct: 109 MRPSLIQALVDLI 121
>gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase.
This family consists of examples of
ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme
involved in biosynthesis of the inner core of
lipopolysaccharide (LPS) for Gram-negative bacteria.
This enzyme is homologous to UDP-glucose 4-epimerase
(TIGR01179) and belongs to the NAD dependent
epimerase/dehydratase family (pfam01370) [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 314
Score = 28.8 bits (65), Expect = 2.2
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 139 CLSSRDTFIYAASAATSGLDTVMKILGDVVLRPK----FSK 175
C FIYA+SAAT G G + RP +SK
Sbjct: 102 CAEKGIPFIYASSAATYGDGEAGFREGRELERPLNVYGYSK 142
>gnl|CDD|217816 pfam03959, FSH1, Serine hydrolase (FSH1). This is a family of
serine hydrolases.
Length = 209
Score = 28.4 bits (64), Expect = 2.3
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 1 MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQ---QPPLSTP 45
+A + L G ++ + S +P P + PP+ TP
Sbjct: 113 LAAILASLLEEGLPLESHPPLKFAILISGFRPREPKYAEYYSPPIQTP 160
>gnl|CDD|213407 cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is
a Nmeni subtype-specific Cas protein, which may function
in the adaptation process which mediates the
incorporation of foreign nucleic acids into the
microbial host genome. Csn 2 may interact directly with
double-stranded DNA. CRISPR (Clustered Regularly
Interspaced Short Palindromic Repeats) and associated
Cas proteins comprise a system for heritable host
defense by prokaryotic cells against phage and other
foreign DNA; Csn2 has been predicted to be a functional
analog of Cas4 based on anti-correlated phyletic
patterns; also known as SPy1049 family.
Length = 223
Score = 28.7 bits (65), Expect = 2.5
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 26/108 (24%)
Query: 106 SHFLEKLAFNSTSEYVNKDAI-AQSLEKIGGICDCLSSRDTFI-----YAASAATSGLDT 159
S FLEKL + E ++ I Q L K G S D+ + Y L
Sbjct: 108 SSFLEKLGLSLPYELEFEEEIDMQDLLKAFGF-KIEESYDSLLENLIDY--------LKI 158
Query: 160 VMKILGD-----VVLRPKFSKEEINMARQTIQFE------LENYQMRP 196
+ ++L V LR ++EE+ + + LEN R
Sbjct: 159 LSELLKKKIFVFVNLRTFLTEEELEELYEHALYNKIKVLLLENSLDRD 206
>gnl|CDD|216255 pfam01031, Dynamin_M, Dynamin central region. This region lies
between the GTPase domain, see pfam00350, and the
pleckstrin homology (PH) domain, see pfam00169.
Length = 296
Score = 28.3 bits (64), Expect = 3.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 175 KEEINMARQTIQFELENYQMRP-----EQETLLMDMIHA 208
K +IN Q + ELE Y P E+ L+D+I A
Sbjct: 82 KSQINKKLQETEKELERYGDDPPEDPAEKGAFLLDLITA 120
>gnl|CDD|224192 COG1273, COG1273, Ku-homolog [Replication, recombination, and
repair].
Length = 278
Score = 28.4 bits (64), Expect = 3.3
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 156 GLDTVMKILGDVVLRPKFSKEEINMARQTIQ-----FELENYQMRPEQETLLMDMIHAAA 210
D + D+ K E + +A+Q I F+ + Y+ R ++ LM++I A
Sbjct: 173 SPDEYFPGIPDI----KIDPEMLELAKQLIDKKTGTFDPDEYEDRYQEA--LMELIEAKL 226
Query: 211 YKDNTLGLPKLCPPASIGVIN 231
T+ PK PP VI+
Sbjct: 227 EGRKTVAAPKKEPPEPSNVID 247
>gnl|CDD|238408 cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of
prokaryotic homologs of the eukaryotic DNA binding
protein Ku. The alignment includes the core domain
shared by the prokaryotic YkoV-like proteins and the
eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs
are predicted to form homodimers. It is proposed that
the Ku homologs are functionally associated with
ATP-dependent DNA ligase and the eukaryotic-type
primase, probably as components of a double-strand break
repair system.
Length = 256
Score = 27.9 bits (63), Expect = 4.8
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 171 PKFSKEEINMARQTI-----QFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPA 225
K +E+ MA+Q I F+ E Y+ + LM++I A + + + P A
Sbjct: 181 VKVDPKELEMAKQLIEQLTGDFDPEKYEDEYREA--LMELIEAKI-EGKAIEAAEPAPAA 237
Query: 226 SIGVIN 231
S V++
Sbjct: 238 SGNVVD 243
>gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like
protein 2 (HSDL2), classical (c) SDRs. This subgroup
includes human HSDL2 and related protens. These are
members of the classical SDR family, with a canonical
Gly-rich NAD-binding motif and the typical YXXXK active
site motif. However, the rest of the catalytic tetrad is
not strongly conserved. HSDL2 may play a part in fatty
acid metabolism, as it is found in peroxisomes. SDRs are
a functionally diverse family of oxidoreductases that
have a single domain with a structurally conserved
Rossmann fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRS are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes have a
3-glycine N-terminal NAD(P)(H)-binding pattern
(typically, TGxxxGxG in classical SDRs and TGxxGxxG in
extended SDRs), while substrate binding is in the
C-terminal region. A critical catalytic Tyr residue
(Tyr-151, human 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering), is often found in a conserved
YXXXK pattern. In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) or additional
Ser, contributing to the active site. Substrates for
these enzymes include sugars, steroids, alcohols, and
aromatic compounds. The standard reaction mechanism is a
proton relay involving the conserved Tyr and Lys, as
well as Asn (or Ser). Some SDR family members, including
17 beta-hydroxysteroid dehydrogenase contain an
additional helix-turn-helix motif that is not generally
found among SDRs.
Length = 243
Score = 27.4 bits (61), Expect = 6.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAA--TSGLDTVMK 162
+ A+ +++EK GGI D + ASA T LDT MK
Sbjct: 75 RAAVEKAVEKFGGI-------DILVNNASAISLTGTLDTPMK 109
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 27.4 bits (60), Expect = 8.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 46 LPGLPKVHYSCVKDNDRNTQVTTLPNGLR--VASENRFGSF 84
LP LP Y N+R T + LP+GL+ + S NR S
Sbjct: 357 LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL 397
>gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase
(GME), extended (e) SDRs. This subgroup contains
ADP-L-glycero-D-mannoheptose 6-epimerase, an extended
SDR, which catalyzes the NAD-dependent interconversion
of ADP-D-glycero-D-mannoheptose and
ADP-L-glycero-D-mannoheptose. This subgroup has the
canonical active site tetrad and NAD(P)-binding motif.
Extended SDRs are distinct from classical SDRs. In
addition to the Rossmann fold (alpha/beta folding
pattern with a central beta-sheet) core region typical
of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 317
Score = 27.3 bits (61), Expect = 8.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 139 CLSSRDTFIYAASAATSG 156
CL + FIYA+SAA G
Sbjct: 104 CLEKKIRFIYASSAAVYG 121
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 27.1 bits (61), Expect = 8.9
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 133 IGGICDCLSSRDTF-----IYAASAATSGLDTVMKILGDVVLRPKFS 174
GG+ L+ D +Y + T +V+ + LR KFS
Sbjct: 231 FGGLLR-LTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFS 276
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 27.2 bits (61), Expect = 9.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 155 SGLDTVMK--ILG-DVVLRPKFSKEEIN 179
SGL +M+ I G VVL KF E+IN
Sbjct: 195 SGLSILMRSVIYGMRVVLVEKFDAEKIN 222
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase.
Length = 629
Score = 27.4 bits (61), Expect = 9.6
Identities = 15/81 (18%), Positives = 20/81 (24%), Gaps = 8/81 (9%)
Query: 13 FKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNG 72
K + S ++ P PLP P D + N
Sbjct: 88 LKESGLTSSKPSDIVISSRSKLKKVFPDPKLNPLPVKPHSVPVPSSDTKNKSTAIDKENK 147
Query: 73 L--RVASEN------RFGSFC 85
EN FGS+C
Sbjct: 148 GQKADEDENEKSCELEFGSYC 168
>gnl|CDD|227917 COG5630, ARG2, Acetylglutamate synthase [Amino acid transport and
metabolism].
Length = 495
Score = 26.9 bits (59), Expect = 10.0
Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 15/152 (9%)
Query: 96 RYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATS 155
+Y+QP S + L L +T KD +++ G CL A A S
Sbjct: 11 KYDQPNASSKNLILSVLNTTATKR-EAKDYLSKYTNDSGQHNHCLFFIRDLHKVAPAILS 69
Query: 156 GLDTVMKILGDVVLRPKFSKEEINMARQTIQFE-LEN----YQMRP--------EQETLL 202
+V+K LG + LRP F + IQ E L++ ++P + T L
Sbjct: 70 QFSSVIKRLGMLGLRPMFVIPP-SPTHVNIQAELLDSIVTEADLKPLHLKEGLTKSRTGL 128
Query: 203 MDMIHAAAYKDNTLGLPKLCPPASIGVINNNT 234
+ + + +G P V N T
Sbjct: 129 YHSVFSQESRFFDIGNSNFIPIVKPYVYNEET 160
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,951,066
Number of extensions: 1089465
Number of successful extensions: 1041
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 30
Length of query: 239
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 145
Effective length of database: 6,768,326
Effective search space: 981407270
Effective search space used: 981407270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)