RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8067
(239 letters)
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 220 bits (562), Expect = 1e-69
Identities = 61/177 (34%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Query: 63 NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
N ++++L NGL+VA+ N G F +G+ ID+GSR+E G +H L++LAF ST
Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-E 63
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
A+A++LE +GG C SSR+ +Y AS + +++++ + V PK +++E+ +
Sbjct: 64 GRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
+ ++E++ M+PE +L +++H AAY TLG P +CP I I+ L Y
Sbjct: 124 LSAEYEIDEVWMKPEL--VLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYR 178
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* ...
Length = 446
Score = 219 bits (560), Expect = 1e-69
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 3/186 (1%)
Query: 54 YSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLA 113
Y+ + TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LA
Sbjct: 4 YAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLA 63
Query: 114 FNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKF 173
F T +A+ + +E +G + S+R+ Y A + L +++L D+V
Sbjct: 64 FKGTKNR-PGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSL 122
Query: 174 SKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNN 233
+I R I EL+ ++ + +HA A++ L P ++ ++
Sbjct: 123 EDSQIEKERDVILQELQENDTSMRD--VVFNYLHATAFQGTPLAQSVEGPSENVRKLSRA 180
Query: 234 TLFTYL 239
L YL
Sbjct: 181 DLTEYL 186
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B*
1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B*
2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* ...
Length = 439
Score = 212 bits (543), Expect = 4e-67
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 6/199 (3%)
Query: 41 PLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQP 100
++ + + V + ++ + T LPNGL +AS + IG+ I +GSRYE
Sbjct: 3 KVAPKVKATEA--PAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENS 60
Query: 101 YPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTV 160
G SH L + +T + I + +E +GG S+R+ Y +D +
Sbjct: 61 NNLGTSHLLRLASSLTTKGA-SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDIL 119
Query: 161 MKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220
M+ L +V P+F + E+ + ++ + P+ +++ +HAAAY+ N L
Sbjct: 120 MEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQA--HVIENLHAAAYR-NALANSL 176
Query: 221 LCPPASIGVINNNTLFTYL 239
CP IG + L Y+
Sbjct: 177 YCPDYRIGKVTPVELHDYV 195
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 200 bits (510), Expect = 2e-62
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 63 NTQVTTLPNGLRVASE-NRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
T+ + LPNGL +A+E S T+G+ +D+GSR E +G +HFLE LAF T
Sbjct: 6 GTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNR- 64
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMA 181
+ I +E IG + +SR+ +Y A + + + IL D++ + I
Sbjct: 65 PQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERE 124
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
R I E E ++ ++ D +H YKD LG L P +I I L Y+
Sbjct: 125 RDVIIRESEEVDKMYDE--VVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYI 180
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A*
2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Length = 431
Score = 199 bits (509), Expect = 3e-62
Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 13/179 (7%)
Query: 65 QVTTLPNGLRVASE-NRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
+VT L NG+ VA+E N ++GV+ SG+ E PY +GVS+ + + +
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKE------ 55
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPK---FSKEEINM 180
+ K G SRD Y S+ D + L ++ K S
Sbjct: 56 --NSAVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEA 113
Query: 181 ARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
++++ ++++++ +++ +H+ A+++ L LP S+ + L ++
Sbjct: 114 TKKSVLKQVQDFEDNDHPN-RVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFA 171
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 160 bits (407), Expect = 4e-47
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 4/176 (2%)
Query: 65 QVTTLPNGLRVASENRFGSF-CTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
TL NG+R+ +E +IG+ + +GSRYE +G+SHFLE + F T+ +
Sbjct: 3 NTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQ 62
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQ 183
+ IA+ + IGG + +S++ Y A + L D+ F KEE+ R+
Sbjct: 63 E-IAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERK 121
Query: 184 TIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
+ E++ P+ ++ D++ +A Y ++LG P L ++ N L Y+
Sbjct: 122 VVFEEIKMVDDTPDD--IVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYM 175
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 139 bits (353), Expect = 5e-40
Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 13/170 (7%)
Query: 73 LRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDA--IAQSL 130
L V++ + T+ V + GSRY GV+H L + F +T+ + A + +
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYATK--DGVAHLLNRFNFQNTN---TRSALKLVRES 55
Query: 131 EKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEIN-MARQTIQFEL 189
E +GG R+ A+ L + L DV+ + F E+ +++
Sbjct: 56 ELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDY 115
Query: 190 ENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
+ P D ++A + LG P L + ++ + +
Sbjct: 116 AVAEQCP--VKSAEDQLYAITF-RKGLGNPLLYD--GVERVSLQDIKDFA 160
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 116 bits (294), Expect = 7e-31
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 65 QVTTLPNGLRVASEN--RFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
+ L NGLRV +E S +G + +G+R E SGVSHFLE + F +
Sbjct: 3 REAELRNGLRVIAEVVPGARS-VALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDA 61
Query: 123 KDAIAQSLEKIGGICDCLSSRD-TFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMA 181
+ ++ +++G + +S + T Y A ++ + +LRP +E+
Sbjct: 62 LA-VNRAFDRMGAQYNAFTSEEATVYYGAVLP-EFAYDLLGLFAK-LLRPALREEDFQTE 118
Query: 182 RQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
+ I E+ YQ RP + + A ++ + LG L SI + + Y
Sbjct: 119 KLVILEEIARYQDRPGF--MAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYH 174
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 97.7 bits (244), Expect = 8e-24
Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 8/161 (4%)
Query: 65 QVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNST---SEY 120
+ T P+G +V + V D+GS E GV+ L T
Sbjct: 5 EHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSA 64
Query: 121 VNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSG--LDTVMKILGDVVLRPKFSKEEI 178
++++AIA L IG + D ++ +S ++ + IL D++ P F +
Sbjct: 65 LDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVL 124
Query: 179 NMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219
R L Q +P ++L AY + G
Sbjct: 125 ERERARAIAGLREAQTQP--GSILGRRFTELAYGKHPYGHV 163
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 90.4 bits (225), Expect = 3e-21
Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 7/179 (3%)
Query: 63 NTQVTTLPNGLRV-ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
N Q + G +V E R + +I +GS + GV+ + +
Sbjct: 13 NVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGK- 70
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSG--LDTVMKILGDVVLRPKFSKEEIN 179
+ AIAQ E +G + +D + + + ++ + +K+ +VV +P F + +
Sbjct: 71 DVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLA 130
Query: 180 MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
+ + E + P L + Y + SI I L +
Sbjct: 131 RIKNQMLAGFEYQKQNP--GKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAF 187
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus
faecalis V583, STR genomics, PSI-2, protein structure
initiative; 1.95A {Enterococcus faecalis}
Length = 425
Score = 85.1 bits (211), Expect = 3e-19
Identities = 23/196 (11%), Positives = 63/196 (32%), Gaps = 26/196 (13%)
Query: 63 NTQVTTLPNGLRVASEN--RFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEY 120
N L G+ + ++ + + V ++ +E L L ++ Y
Sbjct: 2 NAMSVQLVKGVNLHVIPTEKYKTV-RLLVRFNTRLNHE---TITKRTLLSSLMETNSLNY 57
Query: 121 VNKDAIAQSLEKI-GGICDCLSSRDTFIYAAS-----------AATSGLDTVMKILGDVV 168
N+ +++ L ++ G S+ + + + L + L +++
Sbjct: 58 PNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEII 117
Query: 169 LRP-----KFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAY-KDNTLGLPKLC 222
P +F E ++ ++ LE+ + + + + + +P
Sbjct: 118 FAPNIQAGQFEAETFQREKENLKAYLESIVEDKQT--YASLALQSVYFNQSEDQKIPSFG 175
Query: 223 PPASIGVINNNTLFTY 238
A++ +L Y
Sbjct: 176 TVAALAEETAASLAAY 191
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 76.4 bits (187), Expect = 4e-16
Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 4/155 (2%)
Query: 61 DRNTQVTTLPNGLRV-ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSE 119
+R Q L NG+ V + +++ GS + G++H+LE ++ + +
Sbjct: 18 NRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKK 77
Query: 120 YVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEIN 179
Y D++A+ L+ GG + ++ + L + L D + P K+
Sbjct: 78 YPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE 137
Query: 180 MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDN 214
R + E M ++ + M + A
Sbjct: 138 RERNAVNAE---LTMARTRDGMRMAQVSAETINPA 169
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 74.1 bits (182), Expect = 2e-15
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 10/160 (6%)
Query: 61 DRNTQVTTLPNGLRV---ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNST 117
D Q L NG A+ R + +I+++GS E G +H L +LA S+
Sbjct: 23 DPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSS 82
Query: 118 SEYVNKDAIA---QSLEKIGGICDCLSSRDTFIYAASAATSG---LDTVMKILGDVVLRP 171
+ + + Q ++ + ++S D +Y+ S + L + L D
Sbjct: 83 ASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNL 142
Query: 172 KFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAY 211
S++ +N A T + + QE + ++
Sbjct: 143 AVSEQTVNAALNTATDPIATFPQNI-QEPWWRYRLKGSSL 181
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 65.0 bits (159), Expect = 2e-12
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 5/152 (3%)
Query: 63 NTQVTTLPNGLRV-ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYV 121
+T TTLPNGL+V E+ V GS E +GV+H LE + F T + V
Sbjct: 6 STFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGT-KDV 64
Query: 122 NKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMA 181
++ + +GG + ++RD Y +S L VM + D + E
Sbjct: 65 GPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKE 124
Query: 182 RQTIQFE-LENYQMRPEQETLLMDMIHAAAYK 212
Q I E +P + + AA+Y
Sbjct: 125 IQVIAEERRWRTDDKPRS--KAYEALMAASYV 154
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 65.2 bits (158), Expect = 2e-12
Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 4/156 (2%)
Query: 60 NDRNTQVTTLPNGLRV-ASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTS 118
+ R + L NG++V + + + + GS + P +G+SHFL+ + F T
Sbjct: 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTK 90
Query: 119 EYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEI 178
+Y ++ +Q L + G + +S + Y + L+ + L P F +
Sbjct: 91 KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAK 150
Query: 179 NMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDN 214
+ + E ++ + + + A
Sbjct: 151 DREVNAVDSE---HEKNVMNDAWRLFQLEKATGNPK 183
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 47.2 bits (111), Expect = 2e-06
Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 21/175 (12%)
Query: 70 PNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQS 129
G V S + GV R +G+ H L+ + +Y K+ +
Sbjct: 44 KTGCEVMSVSNEDENKVFGV----VFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVEL 99
Query: 130 LEKIGGICD--CLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQF 187
L+ T AS T ++ + D V PK + ++ +
Sbjct: 100 LKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHY 159
Query: 188 ELENYQMRPEQ---------------ETLLMDMIHAAAYKDNTLGLPKLCPPASI 227
EL + + +L + A +NT G+ P I
Sbjct: 160 ELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDI 214
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 45.4 bits (106), Expect = 8e-06
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 2/109 (1%)
Query: 94 GSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK-IGGICDCLSSRD-TFIYAAS 151
+ G+ H LE + + Y K++I + + + + D T A S
Sbjct: 116 YVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGS 175
Query: 152 AATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQET 200
+M + D V +P + + + +E+E + + +
Sbjct: 176 MNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKA 224
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 5e-04
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 22/85 (25%)
Query: 121 VNKDAIAQSL--EKIGGICDCLSSRDTFI------------YAASAATSGLDTVMKILGD 166
+N +A S E + + + + R ++ Y A+ LDTV +L
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL-- 1869
Query: 167 VVLRPKFSKEE-INMARQTIQFELE 190
F K + I++ LE
Sbjct: 1870 -----NFIKLQKIDIIELQKSLSLE 1889
Score = 35.4 bits (81), Expect = 0.015
Identities = 38/266 (14%), Positives = 69/266 (25%), Gaps = 105/266 (39%)
Query: 29 QAKPPPPSFQQPPLSTPLPGLPK-VHY--SCVKDN-------DRNTQVTTLPNGLRVA-- 76
P P+S PL G+ + HY + T GL A
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 77 -----SENRF----GSFCTIGVIIDSGSRYEQPYP------------------------- 102
S F T+ I G R + YP
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 103 -SGVSH-FLEKLAFNSTSEYVNK-----DAIAQSLEKIGGICDCLSSRDTFI---YAAS- 151
S ++ ++ N + SL ++ + S
Sbjct: 341 ISNLTQEQVQDYV-----NKTNSHLPAGKQVEISL---------VNGAKNLVVSGPPQSL 386
Query: 152 ----------AATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFEL-------ENYQM 194
A SGLD R FS+ ++ + + +F L + +
Sbjct: 387 YGLNLTLRKAKAPSGLDQS---------RIPFSERKL---KFSNRF-LPVASPFHSHL-L 432
Query: 195 RPEQETLLMDMI-HAAAYKDNTLGLP 219
P + + D++ + ++ + +P
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 33.9 bits (77), Expect = 0.048
Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 56/210 (26%)
Query: 56 CVKDN-DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAF 114
V +N T G R+ EN I+D + E+ + ++ F
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIR-ENYSAMIFE--TIVDGKLKTEKIFKE-INEHSTSYTF 1719
Query: 115 NSTSEYVNKDAIAQ------------SLEKIGGICDCLSSRDTFI------YAASAATSG 156
S ++ Q L+ G I + TF YAA A+ +
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI----PADATFAGHSLGEYAALASLAD 1775
Query: 157 ---LDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQM---RPEQ------ETLLMD 204
+++++++ V R + +A + NY M P + + L
Sbjct: 1776 VMSIESLVEV---VFYRGMT----MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 205 MIHAAAYKDNTLGLPKLCPPASIGVINNNT 234
++ + L N N
Sbjct: 1829 VVERVGKRTG-----WLVEIV-----NYNV 1848
Score = 27.7 bits (61), Expect = 4.8
Identities = 23/118 (19%), Positives = 33/118 (27%), Gaps = 35/118 (29%)
Query: 116 STSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDT----------VMKILG 165
T+ + A L ++ F T G V K LG
Sbjct: 23 PTASFFI----ASQL------------QEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 166 DVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYK---DNTLGLPK 220
V ++ Q + L + E L + IHA A K +N L K
Sbjct: 67 YVS--SLVEPSKVGQFDQVLNLCLTEF----ENCYLEGNDIHALAAKLLQENDTTLVK 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.17
Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 23/137 (16%)
Query: 107 HFLEKLAFN-STSEYVNKDAIAQSLEKIGGICDC----------LSSRDT-FIYAASAAT 154
H + F +Y KD ++ + DC LS + I + A
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 155 SGLDTVMKILGD----VVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAA 210
SG + L +V + F +E + R +F + + Q +++ M
Sbjct: 62 SGTLRLFWTLLSKQEEMVQK--FVEEVL---RINYKFLMSPIKTEQRQPSMMTRMY--IE 114
Query: 211 YKDNTLGLPKLCPPASI 227
+D ++ ++
Sbjct: 115 QRDRLYNDNQVFAKYNV 131
Score = 30.2 bits (67), Expect = 0.70
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 37/129 (28%)
Query: 90 IIDSGSRYEQPY----------PSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139
II S V F+E +N + ++ +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE------EVLRINYKFLMSPIKT-----EQ 102
Query: 140 LS-SRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELEN--YQMRP 196
S T +Y ++ ++ D F+K N++R +L ++RP
Sbjct: 103 RQPSMMTRMY--------IEQRDRLYNDN---QVFAK--YNVSRLQPYLKLRQALLELRP 149
Query: 197 EQETLLMDM 205
+ L+ +
Sbjct: 150 AKNVLIDGV 158
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 31.4 bits (72), Expect = 0.21
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGS 95
R+A +F +F +G+ D G+
Sbjct: 125 RRIALRRAKFLENFHKMGISPDLGA 149
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 30.6 bits (70), Expect = 0.34
Identities = 5/25 (20%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGS 95
+ + +++ +F ++ TIG+ D+ +
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDTAT 148
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 30.6 bits (70), Expect = 0.35
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGSRY 97
R+ SE F +F +G++ D+G Y
Sbjct: 118 FRLLSEKASFAPAFIHVGLVPDAGHLY 144
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 30.2 bits (69), Expect = 0.43
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGSRY 97
LR+A+ F +F IG++ DSG +
Sbjct: 115 LRLAAVGASFTTAFVRIGLVPDSGLSF 141
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 30.2 bits (69), Expect = 0.44
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGSRY 97
L VA+ F +F +G++ D G+
Sbjct: 116 LVVAAPASYFQLAFTRVGLMPDGGASA 142
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 30.2 bits (69), Expect = 0.55
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGS 95
L A F F ++G+ + G+
Sbjct: 123 LVFADNTALFQIPFVSLGLSPEGGA 147
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 29.8 bits (68), Expect = 0.56
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGS 95
L S R F ++GV ++ S
Sbjct: 123 LAFMSSTARLKCPFTSLGVAPEAAS 147
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 29.0 bits (64), Expect = 1.5
Identities = 14/97 (14%), Positives = 24/97 (24%), Gaps = 7/97 (7%)
Query: 3 GRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHY--SCVKDN 60
R F + + KG I + + TPL + Y
Sbjct: 179 QRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIR 238
Query: 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRY 97
V L + G G +I + + +
Sbjct: 239 INQHSVFPLNKISSTIVGSTSG-----GTMISTSTPH 270
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 28.4 bits (64), Expect = 1.7
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 73 LRVASEN-RFG-SFCTIGVIIDSGSRY 97
AS+ F F +G + S Y
Sbjct: 145 AVYASDRATFHTPFSHLGQSPEGCSSY 171
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 28.4 bits (64), Expect = 2.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 139 CLSSRDTFIYAASAATSGLDTVMKILGDVVLRPK----FSK 175
CL F+YA+SAAT G T I +P +SK
Sbjct: 151 CLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVFGYSK 191
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond,
electron transport, endopl reticulum, FAD, flavoprotein,
glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae}
PDB: 1rp4_A* 1rq1_A* 3nvj_A*
Length = 388
Score = 28.5 bits (63), Expect = 2.2
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 106 SHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILG 165
F E L F + KD + + I DC+ ++ T+G T +KIL
Sbjct: 277 KIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQCDRCRLW-GKIQTTGYATALKILF 335
Query: 166 DVVLRPKFSKEEINMARQTIQFELENYQM 194
+ + +Q I +L Y++
Sbjct: 336 E-------INDADEFTKQHIVGKLTKYEL 357
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of
spovt, transcription, transcription regulation,
repressor, activator; 1.50A {Bacillus subtilis}
Length = 123
Score = 26.9 bits (60), Expect = 3.8
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 119 EYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEI 178
EY DA+ SL ICD RD +I A + +S D + K + +++ E
Sbjct: 6 EYA--DALYDSLGHSVLICD----RDVYI--AVSGSSKKDYLNKSISEML-------ERT 50
Query: 179 NMARQTIQFELENY 192
R ++
Sbjct: 51 MDQRSSVLESDAKS 64
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 27.6 bits (62), Expect = 4.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 146 FIYAASAATSGLDTVMKILGDVVLRPK----FSK 175
F+YA+SAAT G T I +P +SK
Sbjct: 111 FLYASSAATYGGRTSDFIESREYEKPLNVYGYSK 144
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant
methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A
{Coffea canephora} PDB: 2eg5_A*
Length = 384
Score = 27.1 bits (59), Expect = 5.8
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 13/90 (14%)
Query: 19 NHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASE 78
I + + P+ Q + + + ND N+ LP+ R +
Sbjct: 76 QSIDKVGQEKKNELERPTIQ-------------IFLNDLFQNDFNSVFKLLPSFYRNLEK 122
Query: 79 NRFGSFCTIGVIIDSGSRYEQPYPSGVSHF 108
+ + GS Y + +P HF
Sbjct: 123 ENGRKIGSCLIGAMPGSFYSRLFPEESMHF 152
>3sgg_A Hypothetical hydrolase; 7-stranded beta/alpha barrel, structural
genomics, joint CEN structural genomics, JCSG; HET: MSE;
1.25A {Bacteroides thetaiotaomicron}
Length = 536
Score = 26.7 bits (58), Expect = 8.6
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 15 SIKGNHIQCSHFCS-----QAKPPPPSFQQPPLSTPLPGLPKVHYSC--VKDNDRNTQ 65
S G + + + + +Q P + + VHY V D D N
Sbjct: 259 SQLGVSMLPTDQAANLATLSSIYDTTGLKQRPATKEVVTEENVHYVTFLVSDGD-NIA 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,568,359
Number of extensions: 202801
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 38
Length of query: 239
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 148
Effective length of database: 4,160,982
Effective search space: 615825336
Effective search space used: 615825336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)