RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8067
(239 letters)
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 82.7 bits (203), Expect = 6e-20
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 4/178 (2%)
Query: 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEY 120
++ + T LPNGL +AS + IG+ I +GSRYE G SH L + +T
Sbjct: 5 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA 64
Query: 121 VNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINM 180
+ I + +E +GG S+R+ Y +D +M+ L +V P+F + E+
Sbjct: 65 SSFK-ITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 123
Query: 181 ARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
+ ++ + P+ + AA N L CP IG + L Y
Sbjct: 124 LQPQLRIDKAVALQNPQAH---VIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDY 178
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 232
Score = 74.7 bits (182), Expect = 7e-17
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Query: 60 NDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSE 119
+ TQV+ L NGLRVASE CT+GV ID+GSRYE +G +F+E LAF T
Sbjct: 9 SVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKN 68
Query: 120 YVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEIN 179
+ +E +G + S+R+ Y A + L +++L D+V
Sbjct: 69 RPGNALEKE-VESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDS--Q 125
Query: 180 MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASI 227
+ ++ E + ++ + +HA A++ L P ++
Sbjct: 126 IEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENV 173
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 74.3 bits (181), Expect = 8e-17
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 11/178 (6%)
Query: 65 QVTTLPNGLRVAS-ENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNK 123
+VT L NG+ VA+ N ++GV+ SG+ E PY +GVS+ + + + + V
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAVAA 61
Query: 124 DAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQ 183
G SRD Y S+ D + L ++ K + +
Sbjct: 62 K--------EGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEA 113
Query: 184 TIQFELENYQMRPE--QETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
T + L+ Q + +++ +H+ A+++ L LP S+ + L ++
Sbjct: 114 TKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFA 171
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 220
Score = 72.4 bits (176), Expect = 4e-16
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 3/176 (1%)
Query: 63 NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
N ++++L NGL+VA+ N G F +G+ ID+GSR+E G +H L++LAF ST
Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG 64
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
+ +A++LE +GG C SSR+ +Y AS + +++++ + V PK +++E+ +
Sbjct: 65 RA-MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
+ ++E++ M+PE +++H AAY TLG P +CP I I+ L Y
Sbjct: 124 LSAEYEIDEVWMKPELVL--PELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDY 177
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 202
Score = 70.5 bits (171), Expect = 1e-15
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 7/166 (4%)
Query: 73 LRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK 132
L V++ + T+ V + GSRY GV+H L + F +T+ + + + E
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTR-SALKLVRESEL 57
Query: 133 IGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENY 192
+GG R+ A+ L + L DV+ + F E+ + +Y
Sbjct: 58 LGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELT--ESVLPAARYDY 115
Query: 193 QMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
+ + + A LG + ++ + +
Sbjct: 116 AVAEQCPVKSAEDQLYAITFRKGLG--NPLLYDGVERVSLQDIKDF 159
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 64.0 bits (154), Expect = 5e-13
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 64 TQVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
T+ + LPNGL +A+E + T+G+ +D+GSR E +G +HFLE LAF T +
Sbjct: 3 TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGT-QNRP 61
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
+ I +E IG + +SR+ +Y A + + + IL D++ + I R
Sbjct: 62 QQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERER 121
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
I E E ++ D +H YKD LG L P +I I L Y
Sbjct: 122 DVIIRESEEVDKMYDEVV--FDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDY 175
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
562]}
Length = 240
Score = 62.8 bits (151), Expect = 2e-12
Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 3/180 (1%)
Query: 61 DRNTQVTTLPNGLRVAS-ENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSE 119
+R Q L NG+ V + +++ GS + G++H+LE ++ + +
Sbjct: 18 NRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKK 77
Query: 120 YVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEIN 179
Y D++A+ L+ GG + ++ + L + L D + P K+
Sbjct: 78 YPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKK--Y 135
Query: 180 MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
R+ E R + + + ++ N + L
Sbjct: 136 AERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL 195
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 58.3 bits (140), Expect = 7e-11
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 6/140 (4%)
Query: 70 PNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQS 129
G V S + GV R +G+ H L+ + +Y K+ +
Sbjct: 30 KTGCEVMSVSNEDENKVFGV----VFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVEL 85
Query: 130 LEK-IGGICDCLSSRDTF-IYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQF 187
L+ + + + D AS T ++ + D V PK + ++ +
Sbjct: 86 LKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHY 145
Query: 188 ELENYQMRPEQETLLMDMIH 207
EL + + ++ + +
Sbjct: 146 ELNDPSEDISYKGVVFNEMK 165
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 26.4 bits (58), Expect = 3.2
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 106 SHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILG 165
F E L F + KD + + I DC+ D T+G T +KIL
Sbjct: 263 KIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQC-DRCRLWGKIQTTGYATALKILF 321
Query: 166 DVVLRPKFSKEEIN 179
++ +F+K+ I
Sbjct: 322 EINDADEFTKQHIV 335
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus
thermophilus [TaxId: 274]}
Length = 70
Score = 24.7 bits (54), Expect = 3.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 7 VLRSLGF--KSIKGNHIQCSHFCSQAKPPPP 35
LR LGF + KG H +H + P
Sbjct: 13 KLRRLGFVERMAKGGHRLYTHPDGRIVVVPF 43
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Length = 74
Score = 24.7 bits (54), Expect = 4.0
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 173 FSKEEI-NMARQTIQFELENYQMRPEQETLLMDM 205
S +I M+ +Q L+N + Q L+ +
Sbjct: 17 VSAFQISEMSLSELQQVLKNESLSEYQRQLIRKI 50
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III
{Thermus aquaticus [TaxId: 271]}
Length = 275
Score = 25.2 bits (54), Expect = 7.2
Identities = 4/40 (10%), Positives = 12/40 (30%)
Query: 168 VLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIH 207
+ P + + ++ + +R LL +
Sbjct: 26 LRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLAD 65
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2,
SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Length = 308
Score = 25.1 bits (53), Expect = 7.6
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 165 GDVVLRPKFSKEEINMARQTIQFELENYQMRPEQE 199
G + +S EE+ + + L + Q+
Sbjct: 17 GFIGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQD 51
>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas
denitrificans [TaxId: 43306]}
Length = 209
Score = 24.8 bits (54), Expect = 8.5
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAA 210
I+ E + + E+ L + M+HA
Sbjct: 18 AIIRAEADLSRFSEEEADLAVRMVHACG 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 866,685
Number of extensions: 38058
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 16
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)