BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8069
         (466 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Plp
 pdb|3AOV|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Plp
 pdb|3AOW|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Akg
 pdb|3AOW|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Akg
 pdb|3ATH|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Four Akgs As Substrates
           And Allosteric Effectors
 pdb|3ATH|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Four Akgs As Substrates
           And Allosteric Effectors
 pdb|3AV7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Pmp, Kyn As Substrates
           And Kya As Products
 pdb|3AV7|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Pmp, Kyn As Substrates
           And Kya As Products
          Length = 448

 Score = 31.6 bits (70), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 121 LSKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAI 180
            SKK  EM  + VR L  LV T+  + +   +   +T+ +  I  + +E+M+KY ++KA+
Sbjct: 54  FSKKALEMRASEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKY-ADKAL 112

Query: 181 VFNTYQCY--LRDTL 193
            + T + +  LR+TL
Sbjct: 113 QYGTTKGFTPLRETL 127


>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From
           Pyrococcus Horikoshii Ot3
          Length = 403

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 121 LSKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAI 180
            SKK  EM  + VR L  LV T+  + +   +   +T+ +  I  + +E+M+KY ++KA+
Sbjct: 9   FSKKALEMRASEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKY-ADKAL 67

Query: 181 VFNTYQCY--LRDTL 193
            + T + +  LR+TL
Sbjct: 68  QYGTTKGFTPLRETL 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,991,975
Number of Sequences: 62578
Number of extensions: 467557
Number of successful extensions: 1131
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 16
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)