Query psy8069
Match_columns 466
No_of_seqs 217 out of 968
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 17:34:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0186|consensus 100.0 3.8E-89 8.2E-94 704.7 15.4 355 5-455 150-506 (506)
2 PLN02681 proline dehydrogenase 100.0 1.6E-79 3.5E-84 642.2 29.4 304 9-453 148-453 (455)
3 PF01619 Pro_dh: Proline dehyd 100.0 8.3E-62 1.8E-66 485.4 8.9 236 119-441 76-312 (313)
4 PRK11904 bifunctional proline 100.0 1.3E-45 2.9E-50 417.2 20.4 205 125-430 263-474 (1038)
5 PRK11905 bifunctional proline 100.0 3.4E-44 7.3E-49 410.4 20.8 210 126-435 263-484 (1208)
6 PRK11809 putA trifunctional tr 100.0 4.7E-41 1E-45 385.8 20.9 208 127-431 344-563 (1318)
7 COG0506 PutA Proline dehydroge 99.6 1E-14 2.2E-19 151.7 10.3 171 119-390 213-390 (391)
8 COG0506 PutA Proline dehydroge 98.8 3.6E-09 7.9E-14 110.5 6.1 187 128-427 121-314 (391)
9 COG4230 Delta 1-pyrroline-5-ca 95.9 0.0034 7.4E-08 68.8 1.5 39 393-439 6-47 (769)
10 cd05027 S-100B S-100B: S-100B 84.9 1.9 4E-05 36.4 4.9 61 28-92 4-75 (88)
11 cd05023 S-100A11 S-100A11: S-1 83.7 4 8.6E-05 34.5 6.5 61 27-89 4-73 (89)
12 cd05026 S-100Z S-100Z: S-100Z 82.0 3.1 6.7E-05 35.1 5.2 63 29-93 7-78 (93)
13 cd05030 calgranulins Calgranul 81.7 3.1 6.8E-05 34.7 5.1 64 27-92 3-75 (88)
14 PF13499 EF-hand_7: EF-hand do 81.4 3.5 7.7E-05 31.5 4.9 54 33-90 1-62 (66)
15 cd05031 S-100A10_like S-100A10 79.1 2.3 4.9E-05 35.6 3.4 65 29-95 5-78 (94)
16 cd05029 S-100A6 S-100A6: S-100 77.5 7.9 0.00017 32.6 6.2 57 31-89 9-72 (88)
17 PF13833 EF-hand_8: EF-hand do 75.8 3.2 6.9E-05 30.8 3.1 43 51-93 3-50 (54)
18 cd00052 EH Eps15 homology doma 75.4 6 0.00013 29.8 4.6 52 35-90 2-55 (67)
19 cd05022 S-100A13 S-100A13: S-1 75.2 9 0.0002 32.6 6.0 58 29-90 5-69 (89)
20 smart00027 EH Eps15 homology d 72.4 5.1 0.00011 33.6 3.8 60 30-93 8-69 (96)
21 KOG0036|consensus 72.4 7.3 0.00016 42.2 5.8 55 34-92 84-142 (463)
22 KOG0036|consensus 65.7 10 0.00023 41.1 5.3 74 32-109 14-93 (463)
23 PF13202 EF-hand_5: EF hand; P 64.4 2.8 6E-05 27.6 0.5 23 70-92 1-23 (25)
24 cd00051 EFh EF-hand, calcium b 61.9 16 0.00035 25.6 4.2 53 35-91 3-59 (63)
25 COG3589 Uncharacterized conser 61.0 7 0.00015 41.3 2.9 69 85-159 6-74 (360)
26 PF01261 AP_endonuc_2: Xylose 59.8 34 0.00073 30.9 6.9 75 127-203 105-182 (213)
27 COG5126 FRQ1 Ca2+-binding prot 59.3 40 0.00086 32.1 7.4 68 21-92 75-152 (160)
28 PTZ00184 calmodulin; Provision 58.5 18 0.00039 31.0 4.7 60 31-94 10-73 (149)
29 cd05025 S-100A1 S-100A1: S-100 58.5 40 0.00088 27.9 6.6 58 29-89 6-73 (92)
30 cd00213 S-100 S-100: S-100 dom 57.2 21 0.00046 29.1 4.6 60 30-92 6-75 (88)
31 PF15601 Imm42: Immunity prote 56.0 1.2E+02 0.0026 28.2 9.7 81 50-152 47-133 (134)
32 PTZ00183 centrin; Provisional 50.0 48 0.001 28.9 6.0 40 53-92 107-150 (158)
33 TIGR00542 hxl6Piso_put hexulos 49.0 51 0.0011 32.4 6.6 51 126-177 125-175 (279)
34 PF00036 EF-hand_1: EF hand; 48.4 17 0.00037 24.8 2.3 23 69-91 1-23 (29)
35 PRK09767 hypothetical protein; 48.2 17 0.00036 32.7 2.8 45 418-465 2-48 (117)
36 PRK13210 putative L-xylulose 5 44.8 58 0.0012 31.7 6.2 58 127-185 126-184 (284)
37 cd00252 SPARC_EC SPARC_EC; ext 43.9 43 0.00094 29.9 4.8 57 32-94 48-106 (116)
38 PRK09856 fructoselysine 3-epim 43.1 93 0.002 30.2 7.4 64 126-190 121-188 (275)
39 PTZ00184 calmodulin; Provision 42.5 31 0.00068 29.5 3.6 21 70-90 86-106 (149)
40 PRK13209 L-xylulose 5-phosphat 42.4 77 0.0017 31.0 6.7 62 126-188 130-192 (283)
41 PF13405 EF-hand_6: EF-hand do 40.6 12 0.00026 25.1 0.6 25 69-93 1-25 (31)
42 PRK15418 transcriptional regul 34.3 1.1E+02 0.0023 31.8 6.5 63 118-184 27-91 (318)
43 smart00642 Aamy Alpha-amylase 34.2 42 0.00091 31.3 3.3 24 134-157 70-93 (166)
44 KOG0027|consensus 33.9 59 0.0013 29.3 4.1 40 51-90 100-143 (151)
45 PTZ00183 centrin; Provisional 33.5 1.5E+02 0.0033 25.7 6.6 57 32-92 17-77 (158)
46 PHA02591 hypothetical protein; 31.3 13 0.00028 31.9 -0.6 35 338-383 38-72 (83)
47 PF00128 Alpha-amylase: Alpha 31.1 53 0.0011 31.4 3.5 22 135-156 53-74 (316)
48 cd00019 AP2Ec AP endonuclease 28.6 2.4E+02 0.0051 27.7 7.7 67 126-192 115-185 (279)
49 KOG0027|consensus 28.6 2.1E+02 0.0045 25.7 6.7 60 31-94 7-70 (151)
50 TIGR02267 Myxococcus xanthus p 28.4 43 0.00093 30.7 2.2 14 441-454 60-73 (123)
51 PF10512 Borealin: Cell divisi 28.1 65 0.0014 29.1 3.3 28 117-144 89-116 (116)
52 PF00150 Cellulase: Cellulase 27.5 76 0.0016 30.3 3.9 25 132-156 60-84 (281)
53 PRK03906 mannonate dehydratase 26.8 89 0.0019 33.5 4.6 34 125-158 205-238 (385)
54 smart00054 EFh EF-hand, calciu 26.5 24 0.00052 20.9 0.2 23 70-92 2-24 (29)
55 KOG0037|consensus 24.8 3.2E+02 0.0068 27.6 7.6 48 16-67 108-155 (221)
56 TIGR03234 OH-pyruv-isom hydrox 24.4 1.2E+02 0.0025 29.3 4.6 30 126-155 115-144 (254)
57 PF10806 DUF2731: Protein of u 22.8 90 0.002 28.7 3.2 32 180-211 57-93 (125)
58 cd07948 DRE_TIM_HCS Saccharomy 22.5 5.4E+02 0.012 25.9 9.0 67 131-204 109-180 (262)
59 PF10096 DUF2334: Uncharacteri 22.3 1.9E+02 0.0041 28.7 5.7 65 348-424 102-170 (243)
60 PRK11858 aksA trans-homoaconit 21.9 7.4E+02 0.016 26.2 10.3 74 130-205 112-185 (378)
61 PRK09997 hydroxypyruvate isome 21.7 1.4E+02 0.003 29.0 4.6 61 126-188 116-183 (258)
62 KOG2499|consensus 21.1 56 0.0012 36.4 1.8 57 84-152 211-268 (542)
63 cd08582 GDPD_like_2 Glyceropho 20.9 1.7E+02 0.0038 28.0 5.0 56 133-191 86-142 (233)
64 TIGR00695 uxuA mannonate dehyd 20.5 1.4E+02 0.003 32.4 4.6 73 125-221 205-277 (394)
65 cd05024 S-100A10 S-100A10: A s 20.5 2.3E+02 0.005 24.6 5.1 55 31-90 7-70 (91)
No 1
>KOG0186|consensus
Probab=100.00 E-value=3.8e-89 Score=704.67 Aligned_cols=355 Identities=39% Similarity=0.604 Sum_probs=330.5
Q ss_pred cCCCceeeeeecccCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCchHHHHHHHhhcCCCCce
Q psy8069 5 TYGTGITAIKLTALGRPQLLLQLSEVIMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGITDTKKFLEKVTKDAQGV 84 (466)
Q Consensus 5 ~~~~g~~AiKlTaLg~p~lL~~~S~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 84 (466)
...+||.+ +++||+|+.+...|++...+++||+...+..++. ..+++ ..|.+....++...+++|++.....-++.
T Consensus 150 ~q~~G~~~--ml~lg~e~~~~~~S~~~~~~~qfv~~~~~~~~~~-~~~~~-~~l~~~~~~l~~~~l~~v~~~~~~~~~~~ 225 (506)
T KOG0186|consen 150 LQATGIKS--MLALGREQALDGDSEVSNPVQQFVKTTEVAVSLP-ASHLR-SVLVKITAILETASLKDVFDLLLTLYKSP 225 (506)
T ss_pred HHhcchhh--hhhccCccccccchhhhhHHHHhhccccccccch-HHHHH-HHHhhhhhhcccccHhhhhHHHhhcCCCc
Confidence 34679999 9999999999999999999999999988766553 12223 56777777777788999999999999999
Q ss_pred eeecccccccccCccchhhhcCCchhhHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHH
Q psy8069 85 IHLFPWSGLLDVDSNLSDTFRVPCLKEKRMVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAIS 164 (466)
Q Consensus 85 i~l~~w~~l~~~~~~l~~~f~~p~~~~~~~~~l~~~ls~~e~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId 164 (466)
.++.+|+.++++...++..+.+++.++|+ + .||.+|+++|+.++.|++++|++|++.+||+||||||+++||||+
T Consensus 226 ~~l~~w~~~~~~~~~~s~~~~~~~~esg~---~--~ls~eee~el~~~~~rl~~v~~~a~e~~V~llvDAE~T~lqpai~ 300 (506)
T KOG0186|consen 226 LVLLPWNSLLNPSFKLSKPLYVENIESGQ---L--PLSAEEEQELEKMLSRLDKVAQRAQEKGVRLLVDAEQTYLQPAIS 300 (506)
T ss_pred hhcccchhccCcccccchhHHHhhccCcc---c--cccHHHHHHHHHHHHHHHHHHHHHHHcCCceeechhhhhhhhHHH
Confidence 99999999999999999999999999888 2 299999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc--CCCCeeEEEEcccccCCHHHHHHHHHHhHhcCCccceEEeeccCccccccccccccccccccccccc
Q psy8069 165 RLTMELMQKYN--SEKAIVFNTYQCYLRDTLNEVITDLNQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYIV 242 (466)
Q Consensus 165 ~lt~~L~rkyN--~~~~iV~nTyQaYLk~t~~~L~~~l~~A~r~g~~lGvKLVRGAY~~~E~~~~~~~~~~ra~~~g~~~ 242 (466)
.+|.+||+||| +++|+||||||||||||.++|..|++.|+++||+||+||||||||++|++ ||..+||++
T Consensus 301 ~lt~~l~~kfN~~k~~p~v~NTyQaYLKda~e~l~~d~k~A~reG~~~G~KLVRGAYl~sEra--------~a~~~G~ed 372 (506)
T KOG0186|consen 301 YLTYELARKFNSDKERPIVFNTYQAYLKDAGERLHLDLKLARREGWPFGAKLVRGAYLSSERA--------RAISIGYED 372 (506)
T ss_pred HHHHHHHHHhCCCCCCceEeeeHHHHHhhHHHHHHHHHHHHHHcCCchhhhhhhhhhhccchh--------HHHhcCCcC
Confidence 99999999999 78999999999999999999999999999999999999999999999999 999999999
Q ss_pred cccCCcccccchhcccCCcccccccccchhHHHHHHHHHhccCcccchhhhhhhccccccchhhhhccccccCCCCccch
Q psy8069 243 ETSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSMKTLNYIVETSAEKIGGELPQYH 322 (466)
Q Consensus 243 pi~~~v~~~~~~~~~~~~~~~~~~~~Td~~Y~~~l~~ll~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 322 (466)
|++ |+|+ +|.++|++|+.++++.. . ..+++++|
T Consensus 373 p~~-----d~ye-------------at~~~y~~cl~~~~e~~----------------~--------~~~~~~vm----- 405 (506)
T KOG0186|consen 373 PTN-----DTYE-------------ATSAMYNRCLTFLLEDV----------------A--------RGSKAHVM----- 405 (506)
T ss_pred CCC-----chHH-------------HHHHHHHHHHHHhhhhh----------------c--------cCCceeEE-----
Confidence 999 9999 99999999999987631 1 13678899
Q ss_pred hcccccccccccccccccccCCHHHHHHHHHhHHHHHHHHHHcCCCCCCCcEEEeeccCCChhhhHHHHhCCCCeEEEee
Q psy8069 323 VAKSFADRRYKVSSARTYFYLNEATCERNVEIFQDCLHAVADIGISPEDKVICFGQLLGMCDYITFPLGQAGYSAYKYIP 402 (466)
Q Consensus 323 vAS~f~~~~~~~~~~~~~~~HN~~Sv~~~~e~~~~a~~~~~~~gi~p~~~~v~FgQLlGM~D~lt~~L~~~G~~v~KYvP 402 (466)
||| ||++|+.. ++++|++.||.|.++.|||||||||||+|||.|+|+||+||||||
T Consensus 406 VAS-----------------HN~dS~r~-------a~nlm~elgi~~~~~~i~fgQLlGM~D~vSf~L~qagf~V~KYvP 461 (506)
T KOG0186|consen 406 VAS-----------------HNEDSVRL-------ATNLMEELGINPAKGKIYFGQLLGMCDQVSFALGQAGFNVYKYVP 461 (506)
T ss_pred EEe-----------------cchHHHHH-------HHHHHHHhCCCcccceEeHHHhhcchhhhchhhccCCceeEEeec
Confidence 999 99999999 999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCcccccHHHHHHHHhhchHHHhhhHHHHHHHHHHHHHhhcCCcc
Q psy8069 403 YGPVNRKSIGKIIEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKL 455 (466)
Q Consensus 403 yGpv~~~~~~~~~evlPYL~RRa~EN~~~l~~~~~Er~ll~~El~RRl~~g~~ 455 (466)
|||+ +|++|||+|||+||+|+|+++.+||+++|+|||||++.|.+
T Consensus 462 yGPv--------~EvlPYL~RRA~EN~~~l~~~~~er~ll~~eL~RRl~~G~~ 506 (506)
T KOG0186|consen 462 YGPV--------EEVLPYLLRRAQENRSALKGANRERQLLRQELKRRLRAGLL 506 (506)
T ss_pred CCCH--------HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHhhhhcccC
Confidence 9999 99999999999999999999999999999999999998853
No 2
>PLN02681 proline dehydrogenase
Probab=100.00 E-value=1.6e-79 Score=642.19 Aligned_cols=304 Identities=34% Similarity=0.519 Sum_probs=277.6
Q ss_pred ceeeeeecccCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCchHHHHHHHhhcCCCCceeeec
Q psy8069 9 GITAIKLTALGRPQLLLQLSEVIMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGITDTKKFLEKVTKDAQGVIHLF 88 (466)
Q Consensus 9 g~~AiKlTaLg~p~lL~~~S~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~l~ 88 (466)
+|+|||+||||+++||+++| ++|.+++.+++|.|+.+
T Consensus 148 ~~vsiK~Talg~~~ll~~~s-------------------------------------------~~~~~~~~~~~~~l~~~ 184 (455)
T PLN02681 148 SSAAVKITALCPPSLLERVS-------------------------------------------DLLRWQDRDPNGKLPWK 184 (455)
T ss_pred CceEEeeccCCcHHHHHhhh-------------------------------------------hhhhhcccccccccccc
Confidence 89999999999999999998 23445567888999999
Q ss_pred ccccccccCccchhhhcCCchhhHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHH
Q psy8069 89 PWSGLLDVDSNLSDTFRVPCLKEKRMVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTM 168 (466)
Q Consensus 89 ~w~~l~~~~~~l~~~f~~p~~~~~~~~~l~~~ls~~e~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~ 168 (466)
.|+..++.......++..| ...||++|++.++.+++||++||++|+++||+|+|||||+++||+||+|++
T Consensus 185 ~~~~~l~~~~s~~~~~~~~----------~~~l~~~e~~~~~~~~~rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~ 254 (455)
T PLN02681 185 QWSFPLFADSSPLYHATSE----------PEPLTAEEERLLELAHERLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITY 254 (455)
T ss_pred ccccccccccchhhhhccc----------cccCchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHH
Confidence 9998877655443333332 257999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC--CCeeEEEEcccccCCHHHHHHHHHHhHhcCCccceEEeeccCccccccccccccccccccccccccccC
Q psy8069 169 ELMQKYNSE--KAIVFNTYQCYLRDTLNEVITDLNQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYIVETSG 246 (466)
Q Consensus 169 ~L~rkyN~~--~~iV~nTyQaYLk~t~~~L~~~l~~A~r~g~~lGvKLVRGAY~~~E~~~~~~~~~~ra~~~g~~~pi~~ 246 (466)
+||++||++ .|+||||||||||+|+++|..++++|+++||++||||||||||++|++ +|+++||++|||
T Consensus 255 ~l~~~yN~~~~~~~V~~T~QaYLk~t~~~l~~~l~~a~~~g~~~gvKLVRGAY~e~E~~--------~a~~~g~~~pi~- 325 (455)
T PLN02681 255 DLAREFNKGKDRPIVYGTYQAYLKDARERLRLDLERSEREGVPLGAKLVRGAYLSLERR--------LAASLGVPSPVH- 325 (455)
T ss_pred HHHHHhccccCCCcEEEEEeCccccCHHHHHHHHHHHHhcCCCcceEEEecCCcchhhh--------hHHhcCCCCCCc-
Confidence 999999985 899999999999999999999999999999999999999999999999 999999999999
Q ss_pred CcccccchhcccCCcccccccccchhHHHHHHHHHhccCcccchhhhhhhccccccchhhhhccccccCCCCccchhccc
Q psy8069 247 SVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSMKTLNYIVETSAEKIGGELPQYHVAKS 326 (466)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~Td~~Y~~~l~~ll~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~vAS~ 326 (466)
++++ +||++|++|++++|+.. . .+.++++ |||
T Consensus 326 ----~~k~-------------~Td~~Y~~~~~~lL~~~----------------~---------~~~~~~~-----vAT- 357 (455)
T PLN02681 326 ----DTIQ-------------DTHACYNRCAEFLLEKA----------------S---------NGDGEVM-----LAT- 357 (455)
T ss_pred ----CCHH-------------HHHHHHHHHHHHHhhhh----------------c---------cCCeeeE-----Eec-
Confidence 9999 99999999999987631 0 1235666 999
Q ss_pred ccccccccccccccccCCHHHHHHHHHhHHHHHHHHHHcCCCCCCCcEEEeeccCCChhhhHHHHhCCCCeEEEeecCCc
Q psy8069 327 FADRRYKVSSARTYFYLNEATCERNVEIFQDCLHAVADIGISPEDKVICFGQLLGMCDYITFPLGQAGYSAYKYIPYGPV 406 (466)
Q Consensus 327 f~~~~~~~~~~~~~~~HN~~Sv~~~~e~~~~a~~~~~~~gi~p~~~~v~FgQLlGM~D~lt~~L~~~G~~v~KYvPyGpv 406 (466)
||++||.. ++++|.++|+++++.+|+|||||||||+|++.|+++||+|||||||||+
T Consensus 358 ----------------HN~~Si~~-------a~~~~~~~gi~~~~~~veF~qL~GM~d~ls~~L~~~G~~V~kYvPyG~~ 414 (455)
T PLN02681 358 ----------------HNVESGEL-------AAAKMNELGLHKGDPRVQFAQLLGMSDNLSFGLGNAGFRVSKYLPYGPV 414 (455)
T ss_pred ----------------CCHHHHHH-------HHHHHHHcCCCCCCCCEEEeccCCCCHHHHHHHHhcCCCEEEEeeccCc
Confidence 99999999 9999999999998889999999999999999999999999999999999
Q ss_pred cccccCcccccHHHHHHHHhhchHHHhhhHHHHHHHHHHHHHhhcCC
Q psy8069 407 NRKSIGKIIEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSG 453 (466)
Q Consensus 407 ~~~~~~~~~evlPYL~RRa~EN~~~l~~~~~Er~ll~~El~RRl~~g 453 (466)
.||||||+|||+||++++++++.||++||+||+||++.+
T Consensus 415 --------~e~~pYL~RRa~EN~~~~~~~~~er~~l~~El~RR~~~~ 453 (455)
T PLN02681 415 --------EEVIPYLLRRAEENRGLLSGSAIDRQLLRKELKRRLKAA 453 (455)
T ss_pred --------hhhHHHHHHHHhhhhHhHhccHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999998654
No 3
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=100.00 E-value=8.3e-62 Score=485.39 Aligned_cols=236 Identities=35% Similarity=0.515 Sum_probs=196.4
Q ss_pred hcCCHHHHH-HHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCCCCeeEEEEcccccCCHHHHH
Q psy8069 119 SQLSKKEEE-MFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAIVFNTYQCYLRDTLNEVI 197 (466)
Q Consensus 119 ~~ls~~e~~-~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~~~iV~nTyQaYLk~t~~~L~ 197 (466)
..+++.+.+ .++.+++++++||+.|+++||+|+||||++++||+|++++++||++||+..|.||||||||||||+++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~i~~~A~~~~v~v~iDaE~~~~~~~~~~~~~~~~~~~~~~~~~vg~tlQaYL~~t~~~l~ 155 (313)
T PF01619_consen 76 PKLSPLGEEIDLERALERLRRICERAKEHGVFVLIDAEESWYQDAILDLFLELMRKYNKGWPNVGITLQAYLKRTPDDLE 155 (313)
T ss_dssp TTGGGGGHHHHHHHHHHHHHHHHHHHHHTTEEEEE----GGGHHHHHHHHHHHCCHHGTT--SEEEEEETTBTTHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEcCCCccchHHHHHHHHHHhhHhhCCCCeEEEEEechhhchHHHHH
Confidence 344444444 5889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCccceEEeeccCccccccccccccccccccccccccccCCcccccchhcccCCcccccccccchhHHHHH
Q psy8069 198 TDLNQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTL 277 (466)
Q Consensus 198 ~~l~~A~r~g~~lGvKLVRGAY~~~E~~~~~~~~~~ra~~~g~~~pi~~~v~~~~~~~~~~~~~~~~~~~~Td~~Y~~~l 277 (466)
.++++|+++||.|||||||||||++|++ +|++.||++|+. ++.++ .||.+|..|+
T Consensus 156 ~l~~~a~~~g~~~~vRLVkGAY~e~E~~--------~a~~~g~~~~~~----~~~k~-------------~~d~~y~~~~ 210 (313)
T PF01619_consen 156 RLLELARRRGFRLGVRLVKGAYLESERK--------RAQQHGYPDPPA----FTDKA-------------TTDANYRRLA 210 (313)
T ss_dssp HHHHHHHHTTS-EEEEEE--SSHHHHHH--------HHHHTTTSS-SB-----SSHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEEecCCCCCchhH--------HHHHcCCCCCCC----CCchh-------------hhHHHHHHHH
Confidence 9999999999999999999999999999 999999998865 25666 8899999998
Q ss_pred HHHHhccCcccchhhhhhhccccccchhhhhccccccCCCCccchhcccccccccccccccccccCCHHHHHHHHHhHHH
Q psy8069 278 NYIVETSGSVKTLNYIVETSGSMKTLNYIVETSAEKIGGELPQYHVAKSFADRRYKVSSARTYFYLNEATCERNVEIFQD 357 (466)
Q Consensus 278 ~~ll~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~vAS~f~~~~~~~~~~~~~~~HN~~Sv~~~~e~~~~ 357 (466)
..+++.. ..+.++++ ||| ||+.||..
T Consensus 211 ~~l~~~~-------------------------~~~~~~~~-----vAT-----------------Hn~~si~~------- 236 (313)
T PF01619_consen 211 RLLLEGG-------------------------DAPKVYPM-----VAT-----------------HNERSIAL------- 236 (313)
T ss_dssp HHHHCTT-------------------------TT--EEEE-----EE--------------------HHHHHH-------
T ss_pred HHHhccc-------------------------ccceeeee-----ccC-----------------CCHHHHHH-------
Confidence 7775420 01235566 999 99999999
Q ss_pred HHHHHHHcCCCCCCCcEEEeeccCCChhhhHHHHhCCCCeEEEeecCCccccccCcccccHHHHHHHHhhchHHHhhhHH
Q psy8069 358 CLHAVADIGISPEDKVICFGQLLGMCDYITFPLGQAGYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATENKGVLEKISK 437 (466)
Q Consensus 358 a~~~~~~~gi~p~~~~v~FgQLlGM~D~lt~~L~~~G~~v~KYvPyGpv~~~~~~~~~evlPYL~RRa~EN~~~l~~~~~ 437 (466)
+.++++++|++|.+.+|+|||||||+|++++.|++.||+|||||||||+ .+|+|||+||++||+++++...+
T Consensus 237 a~~l~~~~~~~~~~~~~efq~L~Gm~d~l~~~L~~~g~~v~~YvP~G~~--------~~~~~YL~RRl~EN~~~~~~~~~ 308 (313)
T PF01619_consen 237 ALELAEELGIPPNDDRVEFQQLYGMADDLSRALAQAGYRVRKYVPYGPV--------EEWMPYLVRRLAENPANLSFVRR 308 (313)
T ss_dssp HHHHHHCTT-GG--GGEEEEEETTSSHHHHHHHHHHTSEEEEEEEESEG--------GGHHHHHHHHHHHHHGTTSHHHH
T ss_pred HHHHHHHcCCCcccccEEeehhccCCHHHHHHHHhCCCCEEEEEecCCh--------hHHHHHHHHHHHhchhHHHHHHH
Confidence 9999999999987789999999999999999999999999999999999 99999999999999999999888
Q ss_pred HHHH
Q psy8069 438 EKKL 441 (466)
Q Consensus 438 Er~l 441 (466)
++.+
T Consensus 309 ~~~~ 312 (313)
T PF01619_consen 309 EFNL 312 (313)
T ss_dssp HT-T
T ss_pred Hhhc
Confidence 7653
No 4
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-45 Score=417.22 Aligned_cols=205 Identities=24% Similarity=0.288 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCC-----CCeeEEEEcccccCCHHHHHHH
Q psy8069 125 EEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSE-----KAIVFNTYQCYLRDTLNEVITD 199 (466)
Q Consensus 125 e~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~-----~~iV~nTyQaYLk~t~~~L~~~ 199 (466)
+...++.+++||.+||+.|+++|++|+||||+++.+ +++++++++++.+ .+.|++||||||||++.+|..+
T Consensus 263 ~~~~~~~~~~rl~~l~~~A~~~~~~v~IDaEe~~~~----~~tL~l~~~l~~~~~~~~~~~~Giv~QAYlkr~~~~l~~l 338 (1038)
T PRK11904 263 RERVLAELVPRVLELARLAKEANIGLTIDAEEADRL----ELSLDLFEALFRDPSLKGWGGFGLAVQAYQKRALPVLDWL 338 (1038)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCEEEEeCCCcChH----HHHHHHHHHHhcCccccCCCCeeEEEEcccCccHHHHHHH
Confidence 344688999999999999999999999999999985 5666677776654 4568999999999999999999
Q ss_pred HHHhHhcCCccceEEeeccCccccccccccccccccccccccc-cccCCcccccchhcccCCcccccccccchhHHHHHH
Q psy8069 200 LNQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYIV-ETSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLN 278 (466)
Q Consensus 200 l~~A~r~g~~lGvKLVRGAY~~~E~~~~~~~~~~ra~~~g~~~-pi~~~v~~~~~~~~~~~~~~~~~~~~Td~~Y~~~l~ 278 (466)
+++|+++|+++||||||||||++|++ +|++.||++ |++ ++|+ +||.+|++|++
T Consensus 339 ~~~A~~~g~~~~VRLVKGAY~e~E~~--------~a~~~g~~~~pv~-----~~K~-------------~tD~~Y~~~~~ 392 (1038)
T PRK11904 339 ADLARRQGRRIPVRLVKGAYWDSEIK--------RAQELGLPGYPVF-----TRKA-------------ATDVSYLACAR 392 (1038)
T ss_pred HHHHHHcCCccceEEEecCCcchhhh--------HHHhcCCCCCCcc-----CCHH-------------HHHHHHHHHHH
Confidence 99999999999999999999999999 999999998 999 9999 99999999999
Q ss_pred HHHhccCcccchhhhhhhccccccchhhhhccccccCCCCccchhcccccccccccccccccccCCHHHHHHHHHhHHHH
Q psy8069 279 YIVETSGSVKTLNYIVETSGSMKTLNYIVETSAEKIGGELPQYHVAKSFADRRYKVSSARTYFYLNEATCERNVEIFQDC 358 (466)
Q Consensus 279 ~ll~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~vAS~f~~~~~~~~~~~~~~~HN~~Sv~~~~e~~~~a 358 (466)
++|++. ..+ ||+ ||| ||+.|+.. +
T Consensus 393 ~ll~~~---------------------------~~~---~~~--~AT-----------------HN~~si~~-------~ 416 (1038)
T PRK11904 393 KLLSAR---------------------------GAI---YPQ--FAT-----------------HNAHTVAA-------I 416 (1038)
T ss_pred HHHcCC---------------------------CCc---ceE--EeC-----------------CCHHHHHH-------H
Confidence 987530 123 444 999 99999999 6
Q ss_pred HHHHHHcCCCCCCCcEEEeeccCCChhhhHHHH-hCCCCeEEEeecCCccccccCcccccHHHHHHHHhhchH
Q psy8069 359 LHAVADIGISPEDKVICFGQLLGMCDYITFPLG-QAGYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATENKG 430 (466)
Q Consensus 359 ~~~~~~~gi~p~~~~v~FgQLlGM~D~lt~~L~-~~G~~v~KYvPyGpv~~~~~~~~~evlPYL~RRa~EN~~ 430 (466)
+++++ +.+|+|||||||+|++++.|+ +.|++|++|+|||++ ++|||||+||++||++
T Consensus 417 ~~l~~-------~~~~efq~L~GM~d~l~~~L~~~~g~~vrvY~P~G~~--------~~~l~YLvRRl~EN~a 474 (1038)
T PRK11904 417 LEMAG-------HRGFEFQRLHGMGEALYDALLDAPGIPCRIYAPVGSH--------KDLLPYLVRRLLENGA 474 (1038)
T ss_pred HHHcc-------CCcEEEEccCCCCHHHHHHHHHhCCCcEEEEEEeccc--------hhhHHHHHHHHHhcch
Confidence 65432 247999999999999999999 569999999999999 9999999999999974
No 5
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-44 Score=410.42 Aligned_cols=210 Identities=22% Similarity=0.250 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCC-----CCeeEEEEcccccCCHHHHHHHH
Q psy8069 126 EEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSE-----KAIVFNTYQCYLRDTLNEVITDL 200 (466)
Q Consensus 126 ~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~-----~~iV~nTyQaYLk~t~~~L~~~l 200 (466)
...++.+++||.+||+.|+++|++|+||||+++.| +++++++++++.+ ..-+..|+||||||++.+|.+++
T Consensus 263 ~~~~~~l~~~l~~l~~~A~~~~~~l~IDaEe~~~~----~~tL~l~~~l~~~~~~~~~~~~GivlQAYlkr~~~~l~~l~ 338 (1208)
T PRK11905 263 ERVMAELLPRLKALALLAKAYDIGLNIDAEEADRL----ELSLDLLEALCSDPDLAGWNGIGFVVQAYQKRCPFVIDYLI 338 (1208)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccch----HHHHHHHHHHhcCcccccCCCceEEEEccCCccHHHHHHHH
Confidence 34678899999999999999999999999999996 6777788887764 33456799999999999999999
Q ss_pred HHhHhcCCccceEEeeccCccccccccccccccccccccccc-cccCCcccccchhcccCCcccccccccchhHHHHHHH
Q psy8069 201 NQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYIV-ETSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNY 279 (466)
Q Consensus 201 ~~A~r~g~~lGvKLVRGAY~~~E~~~~~~~~~~ra~~~g~~~-pi~~~v~~~~~~~~~~~~~~~~~~~~Td~~Y~~~l~~ 279 (466)
++|+++|+.+||||||||||++|++ +|+..||++ |++ ++|+ +||.+|++|+++
T Consensus 339 ~~A~~~g~~~~VRLVKGAY~d~E~k--------~a~~~g~~~~pv~-----~~K~-------------~tD~~Y~~~~~~ 392 (1208)
T PRK11905 339 DLARRSGRRLMVRLVKGAYWDAEIK--------RAQVDGLEGFPVF-----TRKV-------------HTDVSYIACARK 392 (1208)
T ss_pred HHHHhcCCCceEEEEecCCcChhhh--------HHHhcCCCCCCCc-----CCHH-------------HHHHHHHHHHHH
Confidence 9999999999999999999999999 999999998 999 9999 999999999999
Q ss_pred HHhccCcccchhhhhhhccccccchhhhhccccccCCCCccchhcccccccccccccccccccCCHHHHHHHHHhHHHHH
Q psy8069 280 IVETSGSVKTLNYIVETSGSMKTLNYIVETSAEKIGGELPQYHVAKSFADRRYKVSSARTYFYLNEATCERNVEIFQDCL 359 (466)
Q Consensus 280 ll~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~vAS~f~~~~~~~~~~~~~~~HN~~Sv~~~~e~~~~a~ 359 (466)
||++. ..+ ||+ ||| ||+.|+.. +.
T Consensus 393 ll~~~---------------------------~~~---~p~--~AT-----------------HN~~sia~-------~~ 416 (1208)
T PRK11905 393 LLAAR---------------------------DVI---YPQ--FAT-----------------HNAQTLAA-------IY 416 (1208)
T ss_pred HHhCC---------------------------ccC---Cce--Eec-----------------CCHHHHHH-------HH
Confidence 87531 123 444 999 99999998 66
Q ss_pred HHHHHcCCCCCCCcEEEeeccCCChhhhHHHH---hCCCCeEEEeecCCccccccCcccccHHHHHHHHhhch---HHHh
Q psy8069 360 HAVADIGISPEDKVICFGQLLGMCDYITFPLG---QAGYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATENK---GVLE 433 (466)
Q Consensus 360 ~~~~~~gi~p~~~~v~FgQLlGM~D~lt~~L~---~~G~~v~KYvPyGpv~~~~~~~~~evlPYL~RRa~EN~---~~l~ 433 (466)
+++++.+ +|+|||||||+|++++.|. +.|++|++|+|||++ ++|||||+||++||+ +++.
T Consensus 417 ~la~~~~------~~efq~L~GM~d~l~~~l~~~~~~g~~vriY~P~G~~--------~~~l~YLvRRl~EN~an~sfv~ 482 (1208)
T PRK11905 417 ELAGGKG------DFEFQCLHGMGEPLYDQVVGKEKLGRPCRIYAPVGTH--------ETLLAYLVRRLLENGANSSFVN 482 (1208)
T ss_pred HHhhhcC------CEEEEccCCcCHHHHHHHHhhhcCCCeeEEEEEecch--------HHhHHHHHHHHHhccchHHHHH
Confidence 6554322 6999999999999999997 479999999999999 999999999999996 4454
Q ss_pred hh
Q psy8069 434 KI 435 (466)
Q Consensus 434 ~~ 435 (466)
+.
T Consensus 483 ~~ 484 (1208)
T PRK11905 483 RI 484 (1208)
T ss_pred Hh
Confidence 43
No 6
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=100.00 E-value=4.7e-41 Score=385.78 Aligned_cols=208 Identities=21% Similarity=0.221 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCCC-----CeeEEEEcccccCCHHHHHHHHH
Q psy8069 127 EMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEK-----AIVFNTYQCYLRDTLNEVITDLN 201 (466)
Q Consensus 127 ~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~~-----~iV~nTyQaYLk~t~~~L~~~l~ 201 (466)
..+..+++|+.+||+.|+++|++|+||||++.. .++++++++++|.+. .-+..|+||||||++..|..+++
T Consensus 344 ~v~~~l~~rl~~L~~~A~~~~i~l~IDaEe~~~----l~ltLdl~~~l~~~~~~~~~~~~GivvQAYlkra~~~l~~l~~ 419 (1318)
T PRK11809 344 RVMEELYPRLKSLTLLARQYDIGINIDAEEADR----LEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPFVIDYLID 419 (1318)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCEEEEeCCCCCc----hHHHHHHHHHHHcCccccCCCCeEEEEeCCcccCHHHHHHHHH
Confidence 357789999999999999999999999999987 479999999999763 34677999999999999999999
Q ss_pred HhHhcCCccceEEeeccCccccccccccccccccccccccc-cccCCcccccchhcccCCcccccccccchhHHHHHHHH
Q psy8069 202 QAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYIV-ETSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYI 280 (466)
Q Consensus 202 ~A~r~g~~lGvKLVRGAY~~~E~~~~~~~~~~ra~~~g~~~-pi~~~v~~~~~~~~~~~~~~~~~~~~Td~~Y~~~l~~l 280 (466)
+|++.|++++|||||||||++|++ +|+..||++ |++ ++|. +||.+|++|+++|
T Consensus 420 lA~~~~~~l~VRLVKGAY~d~E~k--------~Aq~~g~~~~pv~-----t~K~-------------~TD~~Y~~~a~~L 473 (1318)
T PRK11809 420 LARRSRRRLMIRLVKGAYWDSEIK--------RAQVDGLEGYPVY-----TRKV-------------YTDVSYLACARKL 473 (1318)
T ss_pred HHHhcCCccCcceeccccCChhhh--------HHHhcCCCCCCCc-----CCHH-------------HHHHHHHHHHHHH
Confidence 999999999999999999999999 999999988 999 9999 9999999999998
Q ss_pred HhccCcccchhhhhhhccccccchhhhhccccccCCCCccchhcccccccccccccccccccCCHHHHHHHHHhHHHHHH
Q psy8069 281 VETSGSVKTLNYIVETSGSMKTLNYIVETSAEKIGGELPQYHVAKSFADRRYKVSSARTYFYLNEATCERNVEIFQDCLH 360 (466)
Q Consensus 281 l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~vAS~f~~~~~~~~~~~~~~~HN~~Sv~~~~e~~~~a~~ 360 (466)
|++. .. .||+ ||| ||..|+.. +.+
T Consensus 474 L~~~---------------------------~~---i~p~--fAT-----------------HN~~sia~-------~~~ 497 (1318)
T PRK11809 474 LAVP---------------------------NL---IYPQ--FAT-----------------HNAHTLAA-------IYH 497 (1318)
T ss_pred hcCC---------------------------CC---cCce--Eec-----------------CCHHHHHH-------HHH
Confidence 7530 11 3566 999 99999998 666
Q ss_pred HHHHcCCCCCCCcEEEeeccCCChhhhHHHHhC------CCCeEEEeecCCccccccCcccccHHHHHHHHhhchHH
Q psy8069 361 AVADIGISPEDKVICFGQLLGMCDYITFPLGQA------GYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATENKGV 431 (466)
Q Consensus 361 ~~~~~gi~p~~~~v~FgQLlGM~D~lt~~L~~~------G~~v~KYvPyGpv~~~~~~~~~evlPYL~RRa~EN~~~ 431 (466)
++.+ +..+ .+++|||||||+|+++..|... |++|++|+|||++ ++|||||+||+.||+..
T Consensus 498 la~~-~~~~--~~~EFQ~L~GM~d~l~~~l~~~~~~~~~~~~~RiYaPvG~~--------~~~l~YLvRRLlEN~AN 563 (1318)
T PRK11809 498 LAGQ-NYYP--GQYEFQCLHGMGEPLYEQVVGKVADGKLNRPCRIYAPVGTH--------ETLLAYLVRRLLENGAN 563 (1318)
T ss_pred HHhh-cCCC--CceEEeeccCCCHHHHHHHHHhhhccCCCCceEEEEEeech--------HHhHHHHHHHHhhcchh
Confidence 5443 3333 4699999999999999999753 6689999999999 99999999999999963
No 7
>COG0506 PutA Proline dehydrogenase [Amino acid transport and metabolism]
Probab=99.56 E-value=1e-14 Score=151.65 Aligned_cols=171 Identities=14% Similarity=0.149 Sum_probs=135.3
Q ss_pred hcCCHHHHH-HHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCC-----CCeeEEEEcccccCC
Q psy8069 119 SQLSKKEEE-MFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSE-----KAIVFNTYQCYLRDT 192 (466)
Q Consensus 119 ~~ls~~e~~-~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~-----~~iV~nTyQaYLk~t 192 (466)
+.....+.. .+..++.++.++...++.++ ++|++++..++-.+ +..+..++|+|.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d----------------~~l~l~~~~~~~~e~~l~~~~~l~~~iQ~~~g~~ 276 (391)
T COG0506 213 DRYDVDQAYRVKVELMPRLGKLYTRVATHD----------------LELSLDLLEELLAEPELAAGAGLGFEIQMLYGRC 276 (391)
T ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHhhc----------------hHhhHHHHHHHhhhhccccCcccceeeHHhhccc
Confidence 333333333 45677888888888888888 55555555555432 445668999999999
Q ss_pred HHHHHHHHHHhHhcCCccceEEeeccCccccccccccccccccccc-cccccccCCcccccchhcccCCcccccccccch
Q psy8069 193 LNEVITDLNQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTL-NYIVETSGSVKTLNYIVETSGSVKTLNYIVETS 271 (466)
Q Consensus 193 ~~~L~~~l~~A~r~g~~lGvKLVRGAY~~~E~~~~~~~~~~ra~~~-g~~~pi~~~v~~~~~~~~~~~~~~~~~~~~Td~ 271 (466)
+.......+++++.|+.+.|+||+||||++|-. |++.. .++-|+. ..+. .||.
T Consensus 277 ~~~~~~~~~~~~~~g~~i~vrlvkGa~W~se~~--------ra~~~~~~nlp~~-----~rk~-------------~td~ 330 (391)
T COG0506 277 TEVRDFLIELLAKEGYPIRVRLVKGAYWDSEFK--------RAQAERPWNLPVF-----TRKV-------------ATDA 330 (391)
T ss_pred HHHHHHHHHHHHhCCCceEEEeecccchHHHHH--------HHHHhccCCCcee-----ehhc-------------cccc
Confidence 999999999999999999999999999999999 77777 5777877 6666 9999
Q ss_pred hHHHHHHHHHhccCcccchhhhhhhccccccchhhhhccccccCCCCccchhcccccccccccccccccccCCHHHHHHH
Q psy8069 272 GSVKTLNYIVETSGSVKTLNYIVETSGSMKTLNYIVETSAEKIGGELPQYHVAKSFADRRYKVSSARTYFYLNEATCERN 351 (466)
Q Consensus 272 ~Y~~~l~~ll~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~vAS~f~~~~~~~~~~~~~~~HN~~Sv~~~ 351 (466)
+|..|...+++. . .+.||+ +|| ||..++..
T Consensus 331 sy~~~~~~ll~~----------------------------~--~~~y~~--~a~-----------------hn~~~ia~- 360 (391)
T COG0506 331 SYKACARLLLEA----------------------------D--NYIYPQ--IAS-----------------HNAFTIAA- 360 (391)
T ss_pred cHHHHHHHHhcc----------------------------c--cchhhh--Hhc-----------------cchhHHHH-
Confidence 999999988752 1 145777 999 99999999
Q ss_pred HHhHHHHHHHHHHcCCCCCCCcEEEeeccCCChhhhHHH
Q psy8069 352 VEIFQDCLHAVADIGISPEDKVICFGQLLGMCDYITFPL 390 (466)
Q Consensus 352 ~e~~~~a~~~~~~~gi~p~~~~v~FgQLlGM~D~lt~~L 390 (466)
+.....+.+.++ +++|++|+||++.+..++
T Consensus 361 ------~~~~~~~~~~~~---~~e~q~l~gmg~~l~~~v 390 (391)
T COG0506 361 ------IYALAPELEVPG---RFEFQMLHGMGEPLYKAV 390 (391)
T ss_pred ------HHHhccccCCcc---chHHHHhccccHHHHHhh
Confidence 777666666654 799999999999998875
No 8
>COG0506 PutA Proline dehydrogenase [Amino acid transport and metabolism]
Probab=98.84 E-value=3.6e-09 Score=110.52 Aligned_cols=187 Identities=17% Similarity=0.164 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CeEEEecCCCCCcchHHHHHHHHHHHHcCCCCeeEEEEcccccCCHHHHHHHHHHhHhc
Q psy8069 128 MFRNMVRRLNTLVRTAKELD-VRIMIDAEQTYFQPAISRLTMELMQKYNSEKAIVFNTYQCYLRDTLNEVITDLNQAKRQ 206 (466)
Q Consensus 128 ~~~~~~~rL~~i~~~A~~~~-Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~~~iV~nTyQaYLk~t~~~L~~~l~~A~r~ 206 (466)
..+.+++.+.+++..+..+| +...||+|....-+.+.....++..++ +.+--..|+||+++.+.+...-+...
T Consensus 121 ~~~~~l~~a~~~l~~~~v~g~~~~~i~~~~~~l~e~~l~~~~d~~~e~----~~~~~~aq~Yl~~~~~~i~~l~~~~~-- 194 (391)
T COG0506 121 VIRKALDNARRILGEAFVHGITIVEIDLEDNKLTEETLGYSEDLLGEA----AYTGALAQAYLKRYLDDIASLGSLSN-- 194 (391)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhcchhhhhhhHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence 35668899999999999999 788999999999998899998888887 33444699999999999998877765
Q ss_pred CCccceEEeeccCccccccccccccccccccccccccccCCcccccchhcccCCcccccccccchhHHHHHHHHHhccCc
Q psy8069 207 KFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGS 286 (466)
Q Consensus 207 g~~lGvKLVRGAY~~~E~~~~~~~~~~ra~~~g~~~pi~~~v~~~~~~~~~~~~~~~~~~~~Td~~Y~~~l~~ll~~~~~ 286 (466)
++++|.|+|.+.+-- +++.+. +.+.+|....+..+..
T Consensus 195 ----~~~i~~g~~~~~~~v-----------------------A~~~~~-------------~~~~~~~~~~~~~~~~--- 231 (391)
T COG0506 195 ----GLRIVKGAYIEPKLV-----------------------ALHDRY-------------DVDQAYRVKVELMPRL--- 231 (391)
T ss_pred ----cCccccCCCccHHHH-----------------------HhcChh-------------hHHHHHHHHHHHhhhh---
Confidence 799999999865443 123333 5666665543332110
Q ss_pred ccchhhhhhhccccccchhhhhccccccCCCCccchhcccccccccccccccccccCCHHH-HHHHHHhHHHHHHHHHHc
Q psy8069 287 VKTLNYIVETSGSMKTLNYIVETSAEKIGGELPQYHVAKSFADRRYKVSSARTYFYLNEAT-CERNVEIFQDCLHAVADI 365 (466)
Q Consensus 287 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~vAS~f~~~~~~~~~~~~~~~HN~~S-v~~~~e~~~~a~~~~~~~ 365 (466)
.+-..+ ++| ||.+. ++. .-+.+.+.
T Consensus 232 -------------------------~~~~~~-----v~~-----------------~d~~l~l~~-------~~~~~~e~ 257 (391)
T COG0506 232 -------------------------GKLYTR-----VAT-----------------HDLELSLDL-------LEELLAEP 257 (391)
T ss_pred -------------------------hhHHHH-----HHh-----------------hchHhhHHH-------HHHHhhhh
Confidence 111233 888 99333 665 44456666
Q ss_pred CCCCCC-CcEEEeeccC----CChhhhHHHHhCCCCeEEEeecCCccccccCcccccHHHHHHHHhh
Q psy8069 366 GISPED-KVICFGQLLG----MCDYITFPLGQAGYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATE 427 (466)
Q Consensus 366 gi~p~~-~~v~FgQLlG----M~D~lt~~L~~~G~~v~KYvPyGpv~~~~~~~~~evlPYL~RRa~E 427 (466)
++.... -.++|+++|| +.|.+...+.+.|+++..|+|||.. |-.|..||.+|
T Consensus 258 ~l~~~~~l~~~iQ~~~g~~~~~~~~~~~~~~~~g~~i~vrlvkGa~----------W~se~~ra~~~ 314 (391)
T COG0506 258 ELAAGAGLGFEIQMLYGRCTEVRDFLIELLAKEGYPIRVRLVKGAY----------WDSEFKRAQAE 314 (391)
T ss_pred ccccCcccceeeHHhhcccHHHHHHHHHHHHhCCCceEEEeecccc----------hHHHHHHHHHh
Confidence 665431 2399999999 8888889999999999999999966 99999999998
No 9
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=95.89 E-value=0.0034 Score=68.83 Aligned_cols=39 Identities=31% Similarity=0.472 Sum_probs=33.2
Q ss_pred CCCCeEEEeecCCccccccCcccccHHHHHHHHhhch---HHHhhhHHHH
Q psy8069 393 AGYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATENK---GVLEKISKEK 439 (466)
Q Consensus 393 ~G~~v~KYvPyGpv~~~~~~~~~evlPYL~RRa~EN~---~~l~~~~~Er 439 (466)
.|.+++.|.|.|.. +..|+||+||+.||+ |++++..+|+
T Consensus 6 l~r~cRiYAPVGtH--------etLLaYLVRRLLENGANsSFVn~i~D~~ 47 (769)
T COG4230 6 LNRPCRIYAPVGTH--------ETLLAYLVRRLLENGANSSFVNRIADES 47 (769)
T ss_pred cCCceEEEccCcch--------HHHHHHHHHHHHhcCCchHHHHhhcCCC
Confidence 46789999999998 999999999999987 7777765554
No 10
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=84.86 E-value=1.9 Score=36.40 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhc--CCCcccccCCCHHHHHHHHHh-----cCc----hHHHHHHHhhcCCCCceeeeccccc
Q psy8069 28 SEVIMRARKFTSEIMG--GRGNVIGQNLTQETLEQRLQQ-----AGI----TDTKKFLEKVTKDAQGVIHLFPWSG 92 (466)
Q Consensus 28 S~~i~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~G~i~l~~w~~ 92 (466)
=.+|..++.-|+..++ ++|. .|+.++|...+.. +|. ++++.++..++.+.+|.|++-.|-.
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~----~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~ 75 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKH----KLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMA 75 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcC----EECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 3467788888988874 3432 3699999999987 664 6699999999999999998866533
No 11
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=83.68 E-value=4 Score=34.53 Aligned_cols=61 Identities=10% Similarity=0.161 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhc-----C----chHHHHHHHhhcCCCCceeeecc
Q psy8069 27 LSEVIMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQA-----G----ITDTKKFLEKVTKDAQGVIHLFP 89 (466)
Q Consensus 27 ~S~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~G~i~l~~ 89 (466)
+-.+|..+...|+..++.+|+ ...|+.++|++.+... + ..++++++..++.+.+|.|++-.
T Consensus 4 le~~i~~l~~~F~~y~~~dg~--~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~E 73 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGD--SYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQE 73 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCC--cCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHH
Confidence 445678888999996654442 2357999999988764 1 25799999999999999998754
No 12
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=82.03 E-value=3.1 Score=35.12 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHh-cC--------chHHHHHHHhhcCCCCceeeecccccc
Q psy8069 29 EVIMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQ-AG--------ITDTKKFLEKVTKDAQGVIHLFPWSGL 93 (466)
Q Consensus 29 ~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~G~i~l~~w~~l 93 (466)
.+|..++.-|+..+..+|+ +..|+.++|.+.+.. ++ ..++++.+..++.+.+|.|++-.|..+
T Consensus 7 ~a~~~~~~~F~~~dd~dgd--g~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l 78 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGD--RYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVL 78 (93)
T ss_pred HHHHHHHHHHHHHHccCCC--CCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 3466667888888854443 124799999999865 21 257999999999999999998775443
No 13
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=81.72 E-value=3.1 Score=34.74 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHH-hcC--------chHHHHHHHhhcCCCCceeeeccccc
Q psy8069 27 LSEVIMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQ-QAG--------ITDTKKFLEKVTKDAQGVIHLFPWSG 92 (466)
Q Consensus 27 ~S~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~G~i~l~~w~~ 92 (466)
+=++|...-..|++-++..|. .+.|+.++|.+.+. .++ .++++.+|..++.+.+|.|++-.|-.
T Consensus 3 ~e~~i~~~~~~f~~y~~~~~~--~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~ 75 (88)
T cd05030 3 LEKAIETIINVFHQYSVRKGH--PDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLV 75 (88)
T ss_pred HHHHHHHHHHHHHHHhccCCC--cccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence 345677888889998876542 35689999999886 332 46799999999999999998876543
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=81.43 E-value=3.5 Score=31.51 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc--------hHHHHHHHhhcCCCCceeeeccc
Q psy8069 33 RARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI--------TDTKKFLEKVTKDAQGVIHLFPW 90 (466)
Q Consensus 33 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~G~i~l~~w 90 (466)
+.+..|..+..... +.|+.++|.+.+..++. +.+..+|..++.+.+|.|++-.|
T Consensus 1 ~l~~~F~~~D~d~~----G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef 62 (66)
T PF13499_consen 1 RLKEAFKKFDKDGD----GYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEF 62 (66)
T ss_dssp HHHHHHHHHSTTSS----SEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHH
T ss_pred CHHHHHHHHcCCcc----CCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHH
Confidence 45778888875432 35699999999988873 45667799999999999987654
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=79.06 E-value=2.3 Score=35.62 Aligned_cols=65 Identities=11% Similarity=0.241 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHh-----cC----chHHHHHHHhhcCCCCceeeecccccccc
Q psy8069 29 EVIMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQ-----AG----ITDTKKFLEKVTKDAQGVIHLFPWSGLLD 95 (466)
Q Consensus 29 ~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~G~i~l~~w~~l~~ 95 (466)
.++..++..|+.+...+++ .+.|+.++|.+.+.. +| .++++.++..++.+.+|.|++-.|-.++.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~--dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGD--KNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCC--CCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4567778888888752210 124699999998864 22 26899999999999999999877655443
No 16
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=77.46 E-value=7.9 Score=32.61 Aligned_cols=57 Identities=16% Similarity=0.311 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHh---cCc----hHHHHHHHhhcCCCCceeeecc
Q psy8069 31 IMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQ---AGI----TDTKKFLEKVTKDAQGVIHLFP 89 (466)
Q Consensus 31 i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~G~i~l~~ 89 (466)
|...=..|+..++..|+ .+.|+.++|.+.+.+ +|. +|+.+++..++.+.+|.|++-.
T Consensus 9 ~~~~i~~F~~y~~~~~~--~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~E 72 (88)
T cd05029 9 IGLLVAIFHKYSGREGD--KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQE 72 (88)
T ss_pred HHHHHHHHHHHHccCCC--CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHH
Confidence 34444677777764442 246799999999963 453 7899999999999999998744
No 17
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=75.80 E-value=3.2 Score=30.80 Aligned_cols=43 Identities=19% Similarity=0.447 Sum_probs=35.1
Q ss_pred cCCCHHHHHHHHHhcCc-----hHHHHHHHhhcCCCCceeeecccccc
Q psy8069 51 QNLTQETLEQRLQQAGI-----TDTKKFLEKVTKDAQGVIHLFPWSGL 93 (466)
Q Consensus 51 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~G~i~l~~w~~l 93 (466)
+.|+.++|...+..+|+ +++...|..++.+.+|+|++-.|..+
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~ 50 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISM 50 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHH
Confidence 45799999999976553 68899999999999999998776543
No 18
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=75.42 E-value=6 Score=29.84 Aligned_cols=52 Identities=8% Similarity=0.130 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc--hHHHHHHHhhcCCCCceeeeccc
Q psy8069 35 RKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI--TDTKKFLEKVTKDAQGVIHLFPW 90 (466)
Q Consensus 35 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~i~l~~w 90 (466)
++.|..+.... .+.++.+++.+.+..+|. ++++.+|..++.+.+|.|++-.|
T Consensus 2 ~~~F~~~D~~~----~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef 55 (67)
T cd00052 2 DQIFRSLDPDG----DGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEF 55 (67)
T ss_pred hHHHHHhCCCC----CCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHH
Confidence 45677665432 235799999999988775 67889999999999998876554
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=75.23 E-value=9 Score=32.58 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhc-CCCcccccCCCHHHHHHHHHh-cCc-----hHHHHHHHhhcCCCCceeeeccc
Q psy8069 29 EVIMRARKFTSEIMG-GRGNVIGQNLTQETLEQRLQQ-AGI-----TDTKKFLEKVTKDAQGVIHLFPW 90 (466)
Q Consensus 29 ~~i~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~G~i~l~~w 90 (466)
.+|...+.-|+..+. +.. +.|+.++|+..+.. +|. +++++.+..++.+.+|.|++-.+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~----g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF 69 (89)
T cd05022 5 KAIETLVSNFHKASVKGGK----ESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEF 69 (89)
T ss_pred HHHHHHHHHHHHHhCCCCC----CeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHH
Confidence 345666777887776 221 35699999998877 653 67999999999999999988654
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=72.39 E-value=5.1 Score=33.55 Aligned_cols=60 Identities=12% Similarity=0.075 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc--hHHHHHHHhhcCCCCceeeecccccc
Q psy8069 30 VIMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI--TDTKKFLEKVTKDAQGVIHLFPWSGL 93 (466)
Q Consensus 30 ~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~i~l~~w~~l 93 (466)
-+...+..|..+..... +.++.+++.+.+...+. +++++++..++.+.+|.|++-.+-.+
T Consensus 8 ~~~~l~~~F~~~D~d~~----G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~ 69 (96)
T smart00027 8 DKAKYEQIFRSLDKNQD----GTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALA 69 (96)
T ss_pred HHHHHHHHHHHhCCCCC----CeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 45667788888874322 35699999999987776 67899999999999999988765543
No 21
>KOG0036|consensus
Probab=72.36 E-value=7.3 Score=42.20 Aligned_cols=55 Identities=22% Similarity=0.363 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc----hHHHHHHHhhcCCCCceeeeccccc
Q psy8069 34 ARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI----TDTKKFLEKVTKDAQGVIHLFPWSG 92 (466)
Q Consensus 34 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~i~l~~w~~ 92 (466)
..++|+.+.-.. +..+.++++.+.|..+|+ ++.++||++++.+.++.||+-+|..
T Consensus 84 l~~~F~~iD~~h----dG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd 142 (463)
T KOG0036|consen 84 LYRIFQSIDLEH----DGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRD 142 (463)
T ss_pred HHHHHhhhcccc----CCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHh
Confidence 335666665432 346799999999999987 6788999999999999999999987
No 22
>KOG0036|consensus
Probab=65.72 E-value=10 Score=41.06 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc-----hHHHHHHHhhcCCCCceeeecccccccccC-ccchhhhc
Q psy8069 32 MRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI-----TDTKKFLEKVTKDAQGVIHLFPWSGLLDVD-SNLSDTFR 105 (466)
Q Consensus 32 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~G~i~l~~w~~l~~~~-~~l~~~f~ 105 (466)
-++|.+|+++..... ..++..++.+.+.+++. .-.+..|+..+.+.+|.+|+-+++..+++. ..+...|.
T Consensus 14 ~r~~~lf~~lD~~~~----g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~ 89 (463)
T KOG0036|consen 14 IRIRCLFKELDSKND----GQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQ 89 (463)
T ss_pred HHHHHHHHHhccCCC----CceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHh
Confidence 578999999986432 34699999999988876 346789999999999999999999877554 35666666
Q ss_pred CCch
Q psy8069 106 VPCL 109 (466)
Q Consensus 106 ~p~~ 109 (466)
.++.
T Consensus 90 ~iD~ 93 (463)
T KOG0036|consen 90 SIDL 93 (463)
T ss_pred hhcc
Confidence 5543
No 23
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=64.43 E-value=2.8 Score=27.62 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=19.1
Q ss_pred HHHHHHhhcCCCCceeeeccccc
Q psy8069 70 TKKFLEKVTKDAQGVIHLFPWSG 92 (466)
Q Consensus 70 ~~~~~~~~~~~~~G~i~l~~w~~ 92 (466)
++++|..++.+.+|.|+.-.|..
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 46789999999999998877654
No 24
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=61.94 E-value=16 Score=25.65 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc----hHHHHHHHhhcCCCCceeeecccc
Q psy8069 35 RKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI----TDTKKFLEKVTKDAQGVIHLFPWS 91 (466)
Q Consensus 35 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~i~l~~w~ 91 (466)
+..|..+.... .+.++.+++...+..++. +++...|...+.+.+|.|++-.|.
T Consensus 3 ~~~f~~~d~~~----~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~ 59 (63)
T cd00051 3 REAFRLFDKDG----DGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFL 59 (63)
T ss_pred HHHHHHhCCCC----CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHH
Confidence 44565554322 235699999999988754 567788999888888988876654
No 25
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=61.01 E-value=7 Score=41.33 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=45.0
Q ss_pred eeecccccccccCccchhhhcCCchhhHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCC
Q psy8069 85 IHLFPWSGLLDVDSNLSDTFRVPCLKEKRMVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYF 159 (466)
Q Consensus 85 i~l~~w~~l~~~~~~l~~~f~~p~~~~~~~~~l~~~ls~~e~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~ 159 (466)
+.++||....+......++...-+.+ .-..+-+.+++... ....++.+||..|+++|+++|||.--+-+
T Consensus 6 fSifp~~~~~~~~~~Yi~~~~~~Gf~----~IFtsl~~~~~~~~--~~~~~~~ell~~Anklg~~vivDvnPsil 74 (360)
T COG3589 6 FSIFPNRSPKEKDIAYIDRMHKYGFK----RIFTSLLIPEEDAE--LYFHRFKELLKEANKLGLRVIVDVNPSIL 74 (360)
T ss_pred EEeccCCCcchhHHHHHHHHHHcCcc----ceeeecccCCchHH--HHHHHHHHHHHHHHhcCcEEEEEcCHHHH
Confidence 56788888766665544443322221 11233344444432 46889999999999999999999877655
No 26
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=59.82 E-value=34 Score=30.91 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHH--HHHHHHHHHHcCCC-CeeEEEEcccccCCHHHHHHHHHHh
Q psy8069 127 EMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAIS--RLTMELMQKYNSEK-AIVFNTYQCYLRDTLNEVITDLNQA 203 (466)
Q Consensus 127 ~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId--~lt~~L~rkyN~~~-~iV~nTyQaYLk~t~~~L~~~l~~A 203 (466)
+.++.+.++|++|++.|+++||+|.+--.......... +-..++.++.+.+. .++|.|...+.. ..++...++..
T Consensus 105 ~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~D~~h~~~~--~~~~~~~i~~~ 182 (213)
T PF01261_consen 105 ENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVGICFDTGHLIMA--GEDPDEAIKRL 182 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEEEEEEHHHHHHT--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcceEEEehHHHHHc--CCCHHHHHHHh
Confidence 45788999999999999999999999887777764331 44566777888653 356777777766 34444444443
No 27
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=59.26 E-value=40 Score=32.10 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=48.1
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc----hHHHHHHHhhcCCCCceeeeccc
Q psy8069 21 PQLLLQLSEVI------MRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI----TDTKKFLEKVTKDAQGVIHLFPW 90 (466)
Q Consensus 21 p~lL~~~S~~i------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~i~l~~w 90 (466)
|++|.-+|..+ -..++-|+.+.-.. .+.|+..++...+..+|. +|+++.|..++.+.+|+|++-.+
T Consensus 75 ~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~----dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF 150 (160)
T COG5126 75 PEFLTVMSVKLKRGDKEEELREAFKLFDKDH----DGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEF 150 (160)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhCCCC----CceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHH
Confidence 56666666665 23345566555322 234688999999988876 78999999999999999988665
Q ss_pred cc
Q psy8069 91 SG 92 (466)
Q Consensus 91 ~~ 92 (466)
..
T Consensus 151 ~~ 152 (160)
T COG5126 151 KK 152 (160)
T ss_pred HH
Confidence 44
No 28
>PTZ00184 calmodulin; Provisional
Probab=58.50 E-value=18 Score=30.95 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc----hHHHHHHHhhcCCCCceeeeccccccc
Q psy8069 31 IMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI----TDTKKFLEKVTKDAQGVIHLFPWSGLL 94 (466)
Q Consensus 31 i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~i~l~~w~~l~ 94 (466)
+...+..|..+.... .+.|+.++|...+..++. ++++..+...+.+.+|.|++-.|...+
T Consensus 10 ~~~~~~~F~~~D~~~----~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 73 (149)
T PTZ00184 10 IAEFKEAFSLFDKDG----DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLM 73 (149)
T ss_pred HHHHHHHHHHHcCCC----CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHH
Confidence 456678888876533 235799999998877664 578889999999999999887766544
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=58.48 E-value=40 Score=27.88 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhcCCCccccc-CCCHHHHHHHHHh-cC--------chHHHHHHHhhcCCCCceeeecc
Q psy8069 29 EVIMRARKFTSEIMGGRGNVIGQ-NLTQETLEQRLQQ-AG--------ITDTKKFLEKVTKDAQGVIHLFP 89 (466)
Q Consensus 29 ~~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~G~i~l~~ 89 (466)
.++..++.-|+.+....++ + .|+.++|.+.+.. +| .++++.+|..++.+.+|.|++-.
T Consensus 6 ~~~~~l~~~F~~fDd~dg~---G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~e 73 (92)
T cd05025 6 TAMETLINVFHAHSGKEGD---KYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQE 73 (92)
T ss_pred HHHHHHHHHHHHHhcccCC---CCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHH
Confidence 3455567777777522221 2 4799999999864 32 36799999999999999887744
No 30
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=57.17 E-value=21 Score=29.07 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcC-CCcccccCCCHHHHHHHHHh-cC--------chHHHHHHHhhcCCCCceeeeccccc
Q psy8069 30 VIMRARKFTSEIMGG-RGNVIGQNLTQETLEQRLQQ-AG--------ITDTKKFLEKVTKDAQGVIHLFPWSG 92 (466)
Q Consensus 30 ~i~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~G~i~l~~w~~ 92 (466)
.|..++..|..+... .+ .+.|+.++|.+.+.. +| .++++.++...+.+.+|.|++-.|..
T Consensus 6 ~~~~l~~~F~~~D~~~~~---~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~ 75 (88)
T cd00213 6 AIETIIDVFHKYSGKEGD---KDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLV 75 (88)
T ss_pred HHHHHHHHHHHHhhccCC---CCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHH
Confidence 345567778887761 11 135699999998865 32 47789999999999999888866544
No 31
>PF15601 Imm42: Immunity protein 42
Probab=55.99 E-value=1.2e+02 Score=28.22 Aligned_cols=81 Identities=23% Similarity=0.343 Sum_probs=49.3
Q ss_pred ccCCCHHHHHHHHHhcCchHHHHHHHhhcCCC-----Cceeeeccccc-ccccCccchhhhcCCchhhHHHHHHhhcCCH
Q psy8069 50 GQNLTQETLEQRLQQAGITDTKKFLEKVTKDA-----QGVIHLFPWSG-LLDVDSNLSDTFRVPCLKEKRMVRLLSQLSK 123 (466)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~G~i~l~~w~~-l~~~~~~l~~~f~~p~~~~~~~~~l~~~ls~ 123 (466)
...+..+++.+.++.| .++++-|.+..+.. +..=.--||.. +-.....|++-|..+ +|
T Consensus 47 ~g~L~~~~~~~A~~eL--~~I~~~l~~~~p~~ViWD~~dl~~~ppWg~~i~~~i~~L~~yFvt~---dG----------- 110 (134)
T PF15601_consen 47 RGYLRYEELEKALKEL--EEIRKELKKFPPSEVIWDIEDLSKQPPWGDNISPDITSLSDYFVTS---DG----------- 110 (134)
T ss_pred cCCCCHHHHHHHHHHH--HHHHHHHhcCChhhheechhhcccCCCCcccCCCCCCcHHHHhcCc---ch-----------
Confidence 4457888888877765 56666666643221 11112246633 334444555555322 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy8069 124 KEEEMFRNMVRRLNTLVRTAKELDVRIMI 152 (466)
Q Consensus 124 ~e~~~~~~~~~rL~~i~~~A~~~~Vrl~I 152 (466)
+++.+.+.+.|+.|.+.+++|.|
T Consensus 111 ------~~~f~~l~~a~~~a~~~~~~v~I 133 (134)
T PF15601_consen 111 ------KDLFEVLFRALESAIEEKVDVVI 133 (134)
T ss_pred ------hhHHHHHHHHHHHHHhcCCCeee
Confidence 34688899999999999999987
No 32
>PTZ00183 centrin; Provisional
Probab=50.02 E-value=48 Score=28.89 Aligned_cols=40 Identities=10% Similarity=0.289 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHhcCc----hHHHHHHHhhcCCCCceeeeccccc
Q psy8069 53 LTQETLEQRLQQAGI----TDTKKFLEKVTKDAQGVIHLFPWSG 92 (466)
Q Consensus 53 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~i~l~~w~~ 92 (466)
++.++|...+..+|. ++++.+|..++.+.+|.|++-+|..
T Consensus 107 i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~ 150 (158)
T PTZ00183 107 ISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYR 150 (158)
T ss_pred CcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 455555555544332 4455555555555555555544433
No 33
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=49.01 E-value=51 Score=32.42 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCC
Q psy8069 126 EEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSE 177 (466)
Q Consensus 126 ~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~ 177 (466)
.+.++++.++|+++++.|+++||+|.+-...+.+-..++.+ .++.+..|.+
T Consensus 125 ~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~-~~li~~v~~~ 175 (279)
T TIGR00542 125 EETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKW-LKWDHYLNSP 175 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHH-HHHHHHcCCC
Confidence 34578899999999999999999999988665554444543 4566666654
No 34
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=48.41 E-value=17 Score=24.77 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.4
Q ss_pred HHHHHHHhhcCCCCceeeecccc
Q psy8069 69 DTKKFLEKVTKDAQGVIHLFPWS 91 (466)
Q Consensus 69 ~~~~~~~~~~~~~~G~i~l~~w~ 91 (466)
|+++.|...+.+.+|+|++-.+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~ 23 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFK 23 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHH
Confidence 57889999999999999886543
No 35
>PRK09767 hypothetical protein; Provisional
Probab=48.17 E-value=17 Score=32.71 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHHHhhchHHHhhhHHHHHHHHHHHHHhhcCCcccee--cCCCCCC
Q psy8069 418 LPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYT--PKGHYTP 465 (466)
Q Consensus 418 lPYL~RRa~EN~~~l~~~~~Er~ll~~El~RRl~~g~~~~~--~~~~~~~ 465 (466)
++.|..||.+.+..+. .--++||+.|+++-++|--|.+ |.|+|.|
T Consensus 2 ~~~~~~~ar~lR~~~T---~aE~~LW~~lr~~~~~g~kFrRQ~pig~yi~ 48 (117)
T PRK09767 2 MDKIKSNARDLRRNLT---LQERKLWRYLRSRRFGDFKFRRQHPVGSYIL 48 (117)
T ss_pred chHHHHHHHHHHcCCC---HHHHHHHHHHHhcccCCCeeEecccccCeee
Confidence 3455555555544332 3445789999988777777765 9999975
No 36
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.77 E-value=58 Score=31.70 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCCC-CeeEEEE
Q psy8069 127 EMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEK-AIVFNTY 185 (466)
Q Consensus 127 ~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~~-~iV~nTy 185 (466)
+.++.+.++|+.||+.|+++||+|.|-.-...+-+..+. +..|++..+.+. .++|-++
T Consensus 126 ~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~-~~~l~~~v~~~~~~~~~D~~ 184 (284)
T PRK13210 126 ETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISK-WKKWDKEIDSPWLTVYPDVG 184 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHH-HHHHHHHcCCCceeEEecCC
Confidence 456788999999999999999999997755444443333 335677776542 2344444
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=43.86 E-value=43 Score=29.89 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc--hHHHHHHHhhcCCCCceeeeccccccc
Q psy8069 32 MRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI--TDTKKFLEKVTKDAQGVIHLFPWSGLL 94 (466)
Q Consensus 32 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~i~l~~w~~l~ 94 (466)
..++..|..+.... ++.|+.++|.... +.. ..+..||+..+.+.+|.|.+-.|...+
T Consensus 48 ~~l~w~F~~lD~d~----DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNY----DGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCC----CCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 44456666665432 2346777777654 222 457778888888888888887776644
No 38
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=43.12 E-value=93 Score=30.24 Aligned_cols=64 Identities=8% Similarity=0.188 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEec---CCCCCcchHHHHHHHHHHHHcCC-CCeeEEEEccccc
Q psy8069 126 EEMFRNMVRRLNTLVRTAKELDVRIMIDA---EQTYFQPAISRLTMELMQKYNSE-KAIVFNTYQCYLR 190 (466)
Q Consensus 126 ~~~~~~~~~rL~~i~~~A~~~~Vrl~IDA---Eqs~~QpaId~lt~~L~rkyN~~-~~iV~nTyQaYLk 190 (466)
.+.++.+.++|+.|++.|+++||+|.|-- ...++-+.... +.++.+..+.+ -.+++.|+.+|..
T Consensus 121 ~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~-~~~l~~~~~~~~v~~~~D~~h~~~~ 188 (275)
T PRK09856 121 NVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNAND-VLHALALVPSPRLFSMVDICAPYVQ 188 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHH-HHHHHHHcCCCcceeEEeecchhcC
Confidence 34678899999999999999999998874 11222233333 45566666643 2355667766653
No 39
>PTZ00184 calmodulin; Provisional
Probab=42.48 E-value=31 Score=29.48 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=9.6
Q ss_pred HHHHHHhhcCCCCceeeeccc
Q psy8069 70 TKKFLEKVTKDAQGVIHLFPW 90 (466)
Q Consensus 70 ~~~~~~~~~~~~~G~i~l~~w 90 (466)
++..|...+.+.+|.|+.-.+
T Consensus 86 ~~~~F~~~D~~~~g~i~~~e~ 106 (149)
T PTZ00184 86 IKEAFKVFDRDGNGFISAAEL 106 (149)
T ss_pred HHHHHHhhCCCCCCeEeHHHH
Confidence 444444444444444444443
No 40
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.35 E-value=77 Score=31.02 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCC-CCeeEEEEccc
Q psy8069 126 EEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSE-KAIVFNTYQCY 188 (466)
Q Consensus 126 ~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~-~~iV~nTyQaY 188 (466)
.+.++.+.+.|+.||+.|+++||+|.|-.-...+-.-.++ ++++.+..+.+ -.++|-++-++
T Consensus 130 ~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~-~~~ll~~v~~~~lgl~~D~~h~~ 192 (283)
T PRK13209 130 NETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISK-ALGYAHYLNSPWFQLYPDIGNLS 192 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHH-HHHHHHHhCCCccceEeccchHH
Confidence 4456788999999999999999999998754444333343 55667777653 23455555444
No 41
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=40.60 E-value=12 Score=25.14 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=18.2
Q ss_pred HHHHHHHhhcCCCCceeeecccccc
Q psy8069 69 DTKKFLEKVTKDAQGVIHLFPWSGL 93 (466)
Q Consensus 69 ~~~~~~~~~~~~~~G~i~l~~w~~l 93 (466)
+++++|+..+.+.+|+|+.-++..+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~ 25 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAI 25 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHH
Confidence 4677888888999998887665543
No 42
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=34.29 E-value=1.1e+02 Score=31.77 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=46.5
Q ss_pred hhcCCHHHHHH-HHHHHHHHHHHHHHHHhCC-CeEEEecCCCCCcchHHHHHHHHHHHHcCCCCeeEEE
Q psy8069 118 LSQLSKKEEEM-FRNMVRRLNTLVRTAKELD-VRIMIDAEQTYFQPAISRLTMELMQKYNSEKAIVFNT 184 (466)
Q Consensus 118 ~~~ls~~e~~~-~~~~~~rL~~i~~~A~~~~-Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~~~iV~nT 184 (466)
...+|..|+.. +---...+.++.+.|++.| |+|.|+-.... ..+|..+|.++|+=..++|..+
T Consensus 27 ~~g~tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~~~----~~~Le~~L~~~fgLk~~iVvp~ 91 (318)
T PRK15418 27 HDGLTQSEIGERLGLTRLKVSRLLEKGRQSGIIRVQINSRFEG----CLELENALRQHFSLQHIRVLPA 91 (318)
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHHHHcCcEEEEEeCCCcc----HHHHHHHHHHHhCCCEEEEEeC
Confidence 45778877753 2223456778999999999 79999976443 3679999999999766766654
No 43
>smart00642 Aamy Alpha-amylase domain.
Probab=34.19 E-value=42 Score=31.34 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCC
Q psy8069 134 RRLNTLVRTAKELDVRIMIDAEQT 157 (466)
Q Consensus 134 ~rL~~i~~~A~~~~Vrl~IDAEqs 157 (466)
+.++.++++|+++|++|++|.=-.
T Consensus 70 ~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 70 EDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC
Confidence 346788899999999999997443
No 44
>KOG0027|consensus
Probab=33.89 E-value=59 Score=29.28 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=33.6
Q ss_pred cCCCHHHHHHHHHhcCc----hHHHHHHHhhcCCCCceeeeccc
Q psy8069 51 QNLTQETLEQRLQQAGI----TDTKKFLEKVTKDAQGVIHLFPW 90 (466)
Q Consensus 51 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~i~l~~w 90 (466)
+.||.++|...+..+|. ++++..+..++.+.+|.|++..+
T Consensus 100 G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef 143 (151)
T KOG0027|consen 100 GFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEF 143 (151)
T ss_pred CcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHH
Confidence 45799999999988876 68999999999999999976443
No 45
>PTZ00183 centrin; Provisional
Probab=33.53 E-value=1.5e+02 Score=25.68 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc----hHHHHHHHhhcCCCCceeeeccccc
Q psy8069 32 MRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI----TDTKKFLEKVTKDAQGVIHLFPWSG 92 (466)
Q Consensus 32 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~i~l~~w~~ 92 (466)
.++...|..+.... .+.++.++|...+...|. .+++..|...+.+.+|.|++-.+..
T Consensus 17 ~~~~~~F~~~D~~~----~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 77 (158)
T PTZ00183 17 KEIREAFDLFDTDG----SGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLD 77 (158)
T ss_pred HHHHHHHHHhCCCC----CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 45677777766433 245799999999987653 5688888888999999888766544
No 46
>PHA02591 hypothetical protein; Provisional
Probab=31.28 E-value=13 Score=31.86 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=27.7
Q ss_pred cccccCCHHHHHHHHHhHHHHHHHHHHcCCCCCCCcEEEeeccCCC
Q psy8069 338 RTYFYLNEATCERNVEIFQDCLHAVADIGISPEDKVICFGQLLGMC 383 (466)
Q Consensus 338 ~~~~~HN~~Sv~~~~e~~~~a~~~~~~~gi~p~~~~v~FgQLlGM~ 383 (466)
.+||.||++.+.- ..+.|.++|.+.+ ..|++||..
T Consensus 38 ~ryfi~~~dd~~~-------vA~eL~eqGlSqe----qIA~~LGVs 72 (83)
T PHA02591 38 TRYFVESEDDLIS-------VTHELARKGFTVE----KIASLLGVS 72 (83)
T ss_pred EEEEEeccchHHH-------HHHHHHHcCCCHH----HHHHHhCCC
Confidence 4799999998877 7778889999754 467788765
No 47
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=31.11 E-value=53 Score=31.37 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCeEEEecCC
Q psy8069 135 RLNTLVRTAKELDVRIMIDAEQ 156 (466)
Q Consensus 135 rL~~i~~~A~~~~Vrl~IDAEq 156 (466)
.+++|+++|+++|++||+|.=-
T Consensus 53 d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 53 DFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEEEET
T ss_pred hhhhhhhccccccceEEEeeec
Confidence 3677889999999999999633
No 48
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.59 E-value=2.4e+02 Score=27.67 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCC--cchHHHHHHHHHHHHc-CCC-CeeEEEEcccccCC
Q psy8069 126 EEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYF--QPAISRLTMELMQKYN-SEK-AIVFNTYQCYLRDT 192 (466)
Q Consensus 126 ~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~--QpaId~lt~~L~rkyN-~~~-~iV~nTyQaYLk~t 192 (466)
.+.++.+++++++|++.|++.||+|.|--....+ ...--.-..++++... .+. .+++-+.+++....
T Consensus 115 ~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~lD~~h~~~~g~ 185 (279)
T cd00019 115 EEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCIDTCHIFAAGY 185 (279)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEEEhhhHHhccC
Confidence 3467889999999999999999999997654432 1111123456777776 432 36777888776543
No 49
>KOG0027|consensus
Probab=28.56 E-value=2.1e+02 Score=25.75 Aligned_cols=60 Identities=15% Similarity=0.285 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc----hHHHHHHHhhcCCCCceeeeccccccc
Q psy8069 31 IMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI----TDTKKFLEKVTKDAQGVIHLFPWSGLL 94 (466)
Q Consensus 31 i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~i~l~~w~~l~ 94 (466)
+...+.-|+.+..... +.++.++|...+..+|. .++...+..++.+.+|.|++-.+..++
T Consensus 7 ~~el~~~F~~fD~d~~----G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~ 70 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGD----GKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLM 70 (151)
T ss_pred HHHHHHHHHHHCCCCC----CcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 4556677777653221 45799999999988875 789999999999999999987766644
No 50
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=28.41 E-value=43 Score=30.67 Aligned_cols=14 Identities=50% Similarity=0.700 Sum_probs=12.3
Q ss_pred HHHHHHHHhhcCCc
Q psy8069 441 LLRQEILRRIKSGK 454 (466)
Q Consensus 441 ll~~El~RRl~~g~ 454 (466)
.|.+|+.|||+.|+
T Consensus 60 ~LL~e~~rRir~GS 73 (123)
T TIGR02267 60 ALLKEISRRIRVGS 73 (123)
T ss_pred HHHHHHHHHHHHHH
Confidence 68899999999886
No 51
>PF10512 Borealin: Cell division cycle-associated protein 8 ; InterPro: IPR018867 The chromosomal passenger complex of Aurora B kinase, INCENP, and Survivin has essential regulatory roles at centromeres and the central spindle in mitosis. Cell division cycle-associated protein 8, also known as Borealin, is also a member of the complex. Approximately half of Aurora B in mitotic cells is complexed with INCENP, Borealin, and Survivin. Depletion of Borealin by RNA interference delays mitotic progression and results in kinetochore-spindle mis-attachments and an increase in bipolar spindles associated with ectopic asters []. ; PDB: 2KDD_A.
Probab=28.14 E-value=65 Score=29.08 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.8
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8069 117 LLSQLSKKEEEMFRNMVRRLNTLVRTAK 144 (466)
Q Consensus 117 l~~~ls~~e~~~~~~~~~rL~~i~~~A~ 144 (466)
.+.+|+++-..+++.|..+|..||+.|+
T Consensus 89 ~l~~Ld~~tl~~ik~L~~~L~~i~~~a~ 116 (116)
T PF10512_consen 89 DLEQLDPETLNQIKTLQANLQKICSKAK 116 (116)
T ss_dssp HHHTS-HHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999875
No 52
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=27.45 E-value=76 Score=30.30 Aligned_cols=25 Identities=20% Similarity=0.487 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEecCC
Q psy8069 132 MVRRLNTLVRTAKELDVRIMIDAEQ 156 (466)
Q Consensus 132 ~~~rL~~i~~~A~~~~Vrl~IDAEq 156 (466)
.+++|+++++.|+++|+.|+||-=.
T Consensus 60 ~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 60 YLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecc
Confidence 5788999999999999999998644
No 53
>PRK03906 mannonate dehydratase; Provisional
Probab=26.77 E-value=89 Score=33.52 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCC
Q psy8069 125 EEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTY 158 (466)
Q Consensus 125 e~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~ 158 (466)
+++.++++.+-|++||..|++.||++.|-..+..
T Consensus 205 ~e~lw~~l~~fL~~v~p~Aee~GV~LaihPdDPp 238 (385)
T PRK03906 205 EEKLRENLAYFLKAIIPVAEEVGVKMAIHPDDPP 238 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCcc
Confidence 3456899999999999999999999999865543
No 54
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=26.52 E-value=24 Score=20.87 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=15.1
Q ss_pred HHHHHHhhcCCCCceeeeccccc
Q psy8069 70 TKKFLEKVTKDAQGVIHLFPWSG 92 (466)
Q Consensus 70 ~~~~~~~~~~~~~G~i~l~~w~~ 92 (466)
+++.|...+.+.+|.|++-.|..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~ 24 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKD 24 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHH
Confidence 45667777777777777665543
No 55
>KOG0037|consensus
Probab=24.83 E-value=3.2e+02 Score=27.60 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=37.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHhcCc
Q psy8069 16 TALGRPQLLLQLSEVIMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQAGI 67 (466)
Q Consensus 16 TaLg~p~lL~~~S~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (466)
++...+.=..-|-..|.+||+.|....-.. +.+|+..+|++.|..+|-
T Consensus 108 ~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~----SG~I~~sEL~~Al~~~Gy 155 (221)
T KOG0037|consen 108 SGTIGFKEFKALWKYINQWRNVFRTYDRDR----SGTIDSSELRQALTQLGY 155 (221)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHhcccCC----CCcccHHHHHHHHHHcCc
Confidence 344566677888899999999999887533 346789999999999986
No 56
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.38 E-value=1.2e+02 Score=29.34 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEecC
Q psy8069 126 EEMFRNMVRRLNTLVRTAKELDVRIMIDAE 155 (466)
Q Consensus 126 ~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAE 155 (466)
.+.++.+.+.|+++|+.|++.||.+.|-..
T Consensus 115 ~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~ 144 (254)
T TIGR03234 115 EEARATLVENLRYAADALDRIGLTLLIEPI 144 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 345778899999999999999999999764
No 57
>PF10806 DUF2731: Protein of unknown function (DUF2731); InterPro: IPR021211 This eukaryotic family of proteins has no known function.
Probab=22.81 E-value=90 Score=28.68 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=28.5
Q ss_pred eeEEEEc-----ccccCCHHHHHHHHHHhHhcCCccc
Q psy8069 180 IVFNTYQ-----CYLRDTLNEVITDLNQAKRQKFYFG 211 (466)
Q Consensus 180 iV~nTyQ-----aYLk~t~~~L~~~l~~A~r~g~~lG 211 (466)
-||||++ ++|-.-|--|...+.+++++|..|.
T Consensus 57 gVynv~~~~~~~~~L~tDP~~L~~qL~Lc~KN~LkLP 93 (125)
T PF10806_consen 57 GVYNVFEHSSTGVILPTDPWCLFAQLILCHKNGLKLP 93 (125)
T ss_pred EeeeeeccCcCCeEecCChHHHHHHHHHhhhcCCcCC
Confidence 3999999 9999999999999999999986543
No 58
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.51 E-value=5.4e+02 Score=25.86 Aligned_cols=67 Identities=7% Similarity=0.144 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCCCCeeEEEEcccccC-----CHHHHHHHHHHhH
Q psy8069 131 NMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAIVFNTYQCYLRD-----TLNEVITDLNQAK 204 (466)
Q Consensus 131 ~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~~~iV~nTyQaYLk~-----t~~~L~~~l~~A~ 204 (466)
+.++.+.++++.|++.|..|.+..|..+.-| .+ ...++.++.+.-++. .-||.| +|.++...+...+
T Consensus 109 e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~-~l~~~~~~~~~~g~~-----~i~l~Dt~G~~~P~~v~~~~~~~~ 180 (262)
T cd07948 109 EIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LV-DLLRVYRAVDKLGVN-----RVGIADTVGIATPRQVYELVRTLR 180 (262)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HH-HHHHHHHHHHHcCCC-----EEEECCcCCCCCHHHHHHHHHHHH
Confidence 4577888899999999999999999888777 23 345677777655543 235555 4677777776654
No 59
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=22.35 E-value=1.9e+02 Score=28.71 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=43.1
Q ss_pred HHHHHHhHHHHHHHHHHcCCCCCCCcEEEeeccCCChhhhHHHHhCCCCeEE----EeecCCccccccCcccccHHHHHH
Q psy8069 348 CERNVEIFQDCLHAVADIGISPEDKVICFGQLLGMCDYITFPLGQAGYSAYK----YIPYGPVNRKSIGKIIEVLPYLSR 423 (466)
Q Consensus 348 v~~~~e~~~~a~~~~~~~gi~p~~~~v~FgQLlGM~D~lt~~L~~~G~~v~K----YvPyGpv~~~~~~~~~evlPYL~R 423 (466)
.....+...++++.+.++|+.|. ...+--|.|.+.-. .+....+++.- |.|.+.. ....||.++
T Consensus 102 ~~~a~~ri~~gl~~l~~~gi~p~---~f~aP~y~~s~~~~-~~~~~~f~~i~~~~~~~~~~~~--------~~~~py~i~ 169 (243)
T PF10096_consen 102 EEEAKERIEKGLEILAELGIYPV---GFEAPHYWASPETY-KVLEKYFTIIYEPNQYYPNKNA--------GQFFPYIIT 169 (243)
T ss_pred HHHHHHHHHHHHHHHHHCCCccc---EEECCccccCHHHH-HHHHhhCcEEEccccccCCccc--------ccccceeec
Confidence 33444456668999999999873 55688999998888 65566565432 4444443 556777766
Q ss_pred H
Q psy8069 424 R 424 (466)
Q Consensus 424 R 424 (466)
-
T Consensus 170 ~ 170 (243)
T PF10096_consen 170 N 170 (243)
T ss_pred c
Confidence 4
No 60
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=21.86 E-value=7.4e+02 Score=26.17 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCCCCeeEEEEcccccCCHHHHHHHHHHhHh
Q psy8069 130 RNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAIVFNTYQCYLRDTLNEVITDLNQAKR 205 (466)
Q Consensus 130 ~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~~~iV~nTyQaYLk~t~~~L~~~l~~A~r 205 (466)
++.++++...++.|++.|..+.+.+|...--+ .....++.+....-++..++--=..=--+|.++...+...++
T Consensus 112 ~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~--~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~ 185 (378)
T PRK11858 112 EEVLERMVEAVEYAKDHGLYVSFSAEDASRTD--LDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVE 185 (378)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEeccCCCCC--HHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 34578888999999999999999999876544 234445555555444432211111122356777776665543
No 61
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.71 E-value=1.4e+02 Score=29.04 Aligned_cols=61 Identities=15% Similarity=0.301 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEecCCC------CCcchHHHHHHHHHHHHcCCC-CeeEEEEccc
Q psy8069 126 EEMFRNMVRRLNTLVRTAKELDVRIMIDAEQT------YFQPAISRLTMELMQKYNSEK-AIVFNTYQCY 188 (466)
Q Consensus 126 ~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs------~~QpaId~lt~~L~rkyN~~~-~iV~nTyQaY 188 (466)
.+.++.+.++|+++++.|++.||+|.+-.... .++. -.-+.+|.+..+.+. .+++-|+-++
T Consensus 116 ~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~--~~~~~~ll~~v~~~~v~l~~D~~h~~ 183 (258)
T PRK09997 116 EQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTG--TRQALKLIDDVGCCNLKIQYDIYHMQ 183 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCC--HHHHHHHHHHhCCCCEEEEeEHHHhh
Confidence 34478889999999999999999999976422 1211 122345666665432 2444455444
No 62
>KOG2499|consensus
Probab=21.12 E-value=56 Score=36.38 Aligned_cols=57 Identities=14% Similarity=0.296 Sum_probs=40.4
Q ss_pred eeeecccccccccCccchhhhcCCchh-hHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy8069 84 VIHLFPWSGLLDVDSNLSDTFRVPCLK-EKRMVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKELDVRIMI 152 (466)
Q Consensus 84 ~i~l~~w~~l~~~~~~l~~~f~~p~~~-~~~~~~l~~~ls~~e~~~~~~~~~rL~~i~~~A~~~~Vrl~I 152 (466)
+.+.+-| +++|+.++.....+.|++. .|...+ -.--|++| +.+|++.|+.+|+|||.
T Consensus 211 KLNVlHW-HivDs~SFPle~~~~PeL~~kGaYs~-~~vYT~eD----------v~evV~yarlRGIRVlp 268 (542)
T KOG2499|consen 211 KLNVLHW-HIVDSQSFPLESPTFPELHRKGAYSP-RHVYTRED----------VSEVVEYARLRGIRVLP 268 (542)
T ss_pred hhceeEE-EeecCCCCccccCCchhhhhcCCCCc-ceeecHHH----------HHHHHHHHHhccceeee
Confidence 4667888 7899999999999999873 232110 01234444 46789999999999985
No 63
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.90 E-value=1.7e+02 Score=27.96 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHH-cCCCCeeEEEEcccccC
Q psy8069 133 VRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKY-NSEKAIVFNTYQCYLRD 191 (466)
Q Consensus 133 ~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rky-N~~~~iV~nTyQaYLk~ 191 (466)
+..|.++++.+++.++.++||-=.....+.+.....++.++| +....++ +|++-.+
T Consensus 86 iptL~evl~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~Sf~~~ 142 (233)
T cd08582 86 VPTLEEYLAIVPKYGKKLFIEIKHPRRGPEAEEELLKLLKESGLLPEQIV---IISFDAE 142 (233)
T ss_pred CCCHHHHHHHHHhcCceEEEEeCCCccCccHHHHHHHHHHHcCCCCCCEE---EEecCHH
Confidence 456888889998889999999865323344445566677788 4434444 4454433
No 64
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=20.55 E-value=1.4e+02 Score=32.37 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCcchHHHHHHHHHHHHcCCCCeeEEEEcccccCCHHHHHHHHHHhH
Q psy8069 125 EEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAIVFNTYQCYLRDTLNEVITDLNQAK 204 (466)
Q Consensus 125 e~~~~~~~~~rL~~i~~~A~~~~Vrl~IDAEqs~~QpaId~lt~~L~rkyN~~~~iV~nTyQaYLk~t~~~L~~~l~~A~ 204 (466)
+++.++++..-|++||-.|.+.||++.|=--+-.+. | | .-|-|.+| .+++.+.++...
T Consensus 205 ~e~lwenl~yFL~~ViPvAEe~GV~LAiHPDDPP~~--i----------~--GlpRIvst--------~ed~~rll~~V~ 262 (394)
T TIGR00695 205 EEKLRDNLAFFLQEILPVAEEYGVQMAIHPDDPPRP--I----------L--GLPRIVST--------IEDMQWLVATSD 262 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEECCCCCCcc--c----------c--CCCcccCC--------HHHHHHHHHhcC
Confidence 456799999999999999999999999976544331 0 0 11233333 455555555432
Q ss_pred hcCCccceEEeeccCcc
Q psy8069 205 RQKFYFGAKLVRGAYIE 221 (466)
Q Consensus 205 r~g~~lGvKLVRGAY~~ 221 (466)
.-..|+-++-|++-.
T Consensus 263 --SpanGlt~CtGSlg~ 277 (394)
T TIGR00695 263 --SPANGFTMCTGSYGV 277 (394)
T ss_pred --CccccEEEEeccccc
Confidence 234577888887743
No 65
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=20.51 E-value=2.3e+02 Score=24.62 Aligned_cols=55 Identities=9% Similarity=0.222 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHh-cC--------chHHHHHHHhhcCCCCceeeeccc
Q psy8069 31 IMRARKFTSEIMGGRGNVIGQNLTQETLEQRLQQ-AG--------ITDTKKFLEKVTKDAQGVIHLFPW 90 (466)
Q Consensus 31 i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~G~i~l~~w 90 (466)
|...-.-|+.-+|.. ..++..+|.+-+.+ ++ .+.+.++++.++.+.+|.||+-.+
T Consensus 7 i~~lI~~FhkYaG~~-----~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF 70 (91)
T cd05024 7 MEKMMLTFHKFAGEK-----NYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSF 70 (91)
T ss_pred HHHHHHHHHHHcCCC-----CcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 333345677777543 35789998887743 21 156888999999999999987553
Done!