RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8069
(466 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 1e-09
Identities = 59/355 (16%), Positives = 105/355 (29%), Gaps = 150/355 (42%)
Query: 2 FRATYGTGITAIKLTALGRPQLLLQLSEVIMRARKFTSEIMGGRGNVIGQNLTQETLEQR 61
F+ TYG I I + P L F G +G I +N + E
Sbjct: 1653 FKDTYGFSILDI---VINNPVNLTIH---------FG----GEKGKRIRENYSAMIFET- 1695
Query: 62 LQQAGITDTKKFLEKVTKDAQGVIHLFPWSGLLDVDSNLSD-TFRVPCLKEKRMVRLLSQ 120
I D K EK+ K+ ++ + + TFR
Sbjct: 1696 -----IVDGKLKTEKIFKE---------------INEHSTSYTFRSE------------- 1722
Query: 121 LSKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYF-QPAI---SRLTMELMQK--- 173
+ + T F QPA+ + E ++
Sbjct: 1723 ----KGLLS--------------------------ATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 174 --------------YNSEKAIVFNTYQCYLRDTLNEVITDLNQAKRQKFYFGAKLV--RG 217
Y A+ +L +V+ + ++V RG
Sbjct: 1753 IPADATFAGHSLGEYA---ALA----------SLADVM-SIESL--------VEVVFYRG 1790
Query: 218 AYIEQ-VSQNQSVKTSGSVKTLN-YIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSVK 275
++ V +++ +++ + +N V S S + L Y+VE G T V+
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK--------RTGWLVE 1842
Query: 276 TLNY------IVETSGSVKTLNYIVETSGSMKTLNYI------VETSAEKIGGEL 318
+NY V +G ++ L+ + +K I S E++ G L
Sbjct: 1843 IVNYNVENQQYV-AAGDLRALDTVTNVLNFIKLQK-IDIIELQKSLSLEEVEGHL 1895
Score = 47.4 bits (112), Expect = 1e-05
Identities = 77/488 (15%), Positives = 149/488 (30%), Gaps = 174/488 (35%)
Query: 51 QNLTQETLEQRLQQAGITDTKKFLEKVTKDAQGVIHLFPWSGLLDVDSNLSDTFRVPCLK 110
+ L L + +LE D IH L + D+ L +K
Sbjct: 77 VGQFDQVLNLCLTEF----ENCYLE--GND----IHALAAKLLQENDTTL--------VK 118
Query: 111 EKRMVR-------LLSQLSKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAE---Q---- 156
K +++ + + K+ + L R E + +++ A Q
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSN---------SALFRAVGEGNAQLV--AIFGGQGNTD 167
Query: 157 TYFQPAISRLTMELMQKYNSEKAIVFNTYQCYLRDTLNEVITDLNQAKRQ----KFYFGA 212
YF+ EL + ++ TY + D + L++ R + F
Sbjct: 168 DYFE--------EL-RD-------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT- 210
Query: 213 KLVRGAYIEQVSQNQ--------------SVKTSGSVKTLNYIVETSGSVKTLNYIVETS 258
+G I + +N S G ++ +Y+V + K L + T
Sbjct: 211 ---QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV----TAKLLGF---TP 260
Query: 259 GSVKTLNYIVETSGSVKTL--NYIVETSGSVKTLNYIVETSGSMKTLNYI---------- 306
G ++ +Y+ +G + L + + S ++ V ++ L +I
Sbjct: 261 GELR--SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--AITVLFFIGVRCYEAYPN 316
Query: 307 -------VETSAEKIGGE-LPQYHVAKSFADRRYKVSSARTYFYLNEATCERNVEIFQDC 358
+E S E E +P ++ +S+ L + + V
Sbjct: 317 TSLPPSILEDSLE--NNEGVPSPMLS---------ISN------LTQEQVQDYVNKTNSH 359
Query: 359 LHAVADIGIS----PEDKVICFG---QLLGMCDY---ITFPLG--QAGYSAYKYIPYGPV 406
L A + IS ++ V+ G L G+ P G Q+ IP+
Sbjct: 360 LPAGKQVEISLVNGAKNLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSR------IPFS-- 410
Query: 407 NRKSIGKIIEVLP--------YLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKL--- 455
RK LP L + I+K+ L++ + + +
Sbjct: 411 ERKLKFS-NRFLPVASPFHSHLL-------VPASDLINKD--LVKNNVS--FNAKDIQIP 458
Query: 456 -FYTPKGH 462
+ T G
Sbjct: 459 VYDTFDGS 466
Score = 45.4 bits (107), Expect = 4e-05
Identities = 85/534 (15%), Positives = 158/534 (29%), Gaps = 185/534 (34%)
Query: 1 MFRATYGTGITAIKLTALGRPQLLLQLSEVIMRARKFTSEIMGGRGNVIG-----QNL-- 53
+ + I A + L + A+ I GG+GN ++L
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVA--IFGGQGNTDDYFEELRDLYQ 178
Query: 54 TQETLEQRLQQAGITDTKKFLEKVTKDAQGVIHLFPWSGLLDVDSNLSDTFRVPCLKEKR 113
T L L I + + L ++ + +F L++ L + P +
Sbjct: 179 TYHVLVGDL----IKFSAETLSELIRTTLDAEKVFTQG--LNILEWLENPSNTP--DKDY 230
Query: 114 MVRL--------LSQLS------KKEEEMFRNMVRRLNTLVRTAKELDVRIMI---DAEQ 156
++ + + QL+ K + L ++ L + I D+ +
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 157 TYFQPAISRLTMELMQKYNSEKAIVFNTYQCY---------LRDTL--NE-------VIT 198
++F +T+ L I Y+ Y L D+L NE I+
Sbjct: 291 SFFVSVRKAITV-LFF-------IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 199 DLNQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYIVETSGSVKTLNYIVETS 258
+L Q + Q Y+ + N + V I S+ N
Sbjct: 343 NLTQEQVQD-----------YVNKT--NSHLPAGKQV----EI-----SLV--N------ 372
Query: 259 GSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSMKTLNYIVETSAEKI--GG 316
G+ N +V SG ++L Y + + K
Sbjct: 373 GAK---NLVV--SGPPQSL---------------------------YGLNLTLRKAKAPS 400
Query: 317 ELPQYHVAKSFADRRYKVS------SARTYF---YLNEATCERNVEIFQDCLHAVADIGI 367
L Q + F++R+ K S ++ F L A+ I +D ++
Sbjct: 401 GLDQSRI--PFSERKLKFSNRFLPVASP--FHSHLLVPAS----DLINKDL--VKNNVSF 450
Query: 368 SPED-KVICF------------GQLLG-MCDYIT-FPL---GQAGYSAYKYIPYGPVNRK 409
+ +D ++ + G + + D I P+ + A + +GP
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 410 SIGKIIEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYTPKGHY 463
+G L+ R + GV R I +G L P Y
Sbjct: 511 GLGV-------LTHRNKDGTGV----------------RVIVAGTLDINPDDDY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 64/459 (13%), Positives = 140/459 (30%), Gaps = 140/459 (30%)
Query: 56 ETLEQRLQQAGITDTKKFLEKVTKDAQGVIHLFPWSGLLDV------DSNLSDTFRVPCL 109
ET E + Q I F + + F + D+ +
Sbjct: 10 ETGEHQYQYKDILSV--FEDAFVDN-------FDCKDVQDMPKSILSKEEIDHIIMSKD- 59
Query: 110 KEKRMVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQT-YFQPAISRLTM 168
+RL L K+E MV++ V ++ + ++ +T QP++
Sbjct: 60 AVSGTLRLFWTLLSKQE----EMVQK---FVEEVLRINYKFLMSPIKTEQRQPSMM---- 108
Query: 169 ELMQKYNSEKAIVFNTYQCYLRDTLNEVITDLNQAKRQKFYFGAKLVRGAYIEQVSQNQS 228
+ Y ++ ++N N+V N ++ Q + KL + + ++N
Sbjct: 109 --TRMYIEQRDRLYND---------NQVFAKYNVSRLQPY---LKLRQALLELRPAKNVL 154
Query: 229 V-------KTSGSVKTLNYIVETSGSVKTLN-----YIVETSGSVKTLNYIVETSGSVKT 276
+ KT ++ S V+ ++ + + ++E ++
Sbjct: 155 IDGVLGSGKTWVALDVCL-----SYKVQCKMDFKIFWL--NLKNCNSPETVLEM---LQK 204
Query: 277 LNYIVETSGSVKTLNYIVETSGSMKTLNYIVETSAEKIGGELPQYHVAKSFADRRYK--- 333
L Y ++ N+ + S N + + + EL + + Y+
Sbjct: 205 LLYQIDP-------NWTSRSDHS---SNIKLRIHSIQ--AELRRL-----LKSKPYENCL 247
Query: 334 -----VSSART--YFYLNEATCE-----RNVEIFQDCLHAVA---------DIGISPEDK 372
V +A+ F L+ C+ R ++ D L A + ++P++
Sbjct: 248 LVLLNVQNAKAWNAFNLS---CKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEV 303
Query: 373 VICFGQLLGM---------CDYITFPLGQAGYSA-----------YKYIPYGPVNRKSIG 412
+ L T P + + +K++ + I
Sbjct: 304 KSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIE 360
Query: 413 KIIEVL-PYLSRRATENKGVLE---KISKEKKLLRQEIL 447
+ VL P R+ + V I LL ++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILL--SLI 395
Score = 51.8 bits (123), Expect = 3e-07
Identities = 70/485 (14%), Positives = 143/485 (29%), Gaps = 120/485 (24%)
Query: 20 RPQLLLQLSEVIMRARKFTSEI----MGGRGNVIGQNLTQETL-EQRLQQA---GI---- 67
R Q L+L + ++ R + + G G + + ++Q I
Sbjct: 133 RLQPYLKLRQALLELRP-AKNVLIDGVLGSGK---TWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 68 ----TDTKKFLEKVTKDAQGVIHLF--PWSGLLDVDSNLSDTFRVPCLKEKRMVRLLSQL 121
+ LE + Q +++ W+ D SN+ R+ ++ + RLL
Sbjct: 189 LKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNIK--LRIHSIQA-ELRRLLKS- 240
Query: 122 SKKEEEMFRNMVRRLNTL--VRTAKELDV-----RIMI---DAEQTYFQPAI--SRLTME 169
+ L L V+ AK + +I++ + T F A + ++++
Sbjct: 241 --------KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 170 LMQK--YNSEKAIVFNTYQCYLRDTLNEVITDL-NQAKRQKFYFGAKLVRGAYIEQVSQN 226
E + Y L+ DL + E +
Sbjct: 293 HHSMTLTPDEVKSLLLKY-------LDCRPQDLPREVLT-----TNPRRLSIIAESIRDG 340
Query: 227 QSVKTSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGS 286
+ T + K +N L I+E+ S+ L E L+ S
Sbjct: 341 LA--TWDNWKHVNC--------DKLTTIIES--SLNVLEP-AEYRKMFDRLSVFPP---S 384
Query: 287 VKTLNYIVETSGSMKTL-NYIVETSAEKIGGELPQYHVAKSFADRRYKVSSARTY-FYLN 344
I + + + ++++ + +L S +++ K S+ YL
Sbjct: 385 AH----I--PTILLSLIWFDVIKSDVMVVVNKL----HKYSLVEKQPKESTISIPSIYLE 434
Query: 345 E-ATCERNVEIFQDCLHAVADIGISPEDKVI-CFGQLLGMCDYITFPLGQAGYSAYKYIP 402
E LH ++ + P Y Y +I
Sbjct: 435 LKVKLENEYA-----LHR----------SIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIG 478
Query: 403 YGPVNRKSIGKIIEVLP--YLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYTPK 460
+ N + + + + +L R E K + + L+++K FY K
Sbjct: 479 HHLKNIEHPER-MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK----FY--K 531
Query: 461 GHYTP 465
+
Sbjct: 532 PYICD 536
Score = 36.0 bits (82), Expect = 0.032
Identities = 41/249 (16%), Positives = 75/249 (30%), Gaps = 62/249 (24%)
Query: 235 VKTL--NYIVETSGSV---KTLNYIVETSGSVKTLNY---IVETSGSVKTLNYIVETSGS 286
V + + S+ + +++I+ + +V + + + + VE
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEE--- 85
Query: 287 VKTLNY--IVET------SGSMKTLNYIVETSAEKIGGE-LPQYHVAKSFADRRYKVSSA 337
V +NY ++ SM T YI + + +Y+V+ R
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKL 140
Query: 338 RTYFYLNEATCERNVEIFQDCLHAVADIGIS-------PEDKVICFGQLLGMCDYITFPL 390
R L E +NV + V G + KV C
Sbjct: 141 RQA--LLELRPAKNV-----LIDGVLGSGKTWVALDVCLSYKVQCK-----------MDF 182
Query: 391 GQAGYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATENKGVLEKISKEKKLLRQEI---L 447
+ ++ N S ++E+L L + N S KL I L
Sbjct: 183 K-----IF-WLNLK--NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 448 RRIKSGKLF 456
RR+ K +
Sbjct: 235 RRLLKSKPY 243
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 51.3 bits (123), Expect = 4e-07
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 124 KEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKA---- 179
+ +V +L L + AK D+ +DAE+ L+++++ ++ +
Sbjct: 251 SRARVMVELVPQLLDLAQRAKAHDLNFTVDAEEA----DRLELSLDVIAATLADPSLKGW 306
Query: 180 ----IVFNTYQCYLRDTLNEVITDLNQ-AKRQKFYFGAKLVRGAYIEQ 222
+ Q Y + VI ++ A+ +LV+GAY +
Sbjct: 307 DGFGLAI---QAYQKRAS-AVIDYVDALARAHDRKLMVRLVKGAYWDT 350
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 51.2 bits (123), Expect = 6e-07
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 19/105 (18%)
Query: 124 KEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRL--TMELMQKYNSEKA-- 179
E ++ R+ + + EL+ + ID E +E+ ++ E
Sbjct: 237 DFEGSVVAILDRMRRIFKKVMELNGFLCIDMESY------RHKEIILEVFRRLKLEYRDY 290
Query: 180 ----IVFNTYQCYLRDTLNEVITDLNQ-AKRQKFYFGAKLVRGAY 219
IV Q YL+D + + DL AK K +LV+GAY
Sbjct: 291 PHLGIVL---QAYLKDND-KDLDDLLAWAKEHKVQISVRLVKGAY 331
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 43.1 bits (102), Expect = 1e-04
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 133 VRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAIVFNTYQCYLRDT 192
+ L ++R A+ V + +D E + A RL L ++ S+ IV Q YL T
Sbjct: 133 LALLREVLREAEPRGVFVRLDMEDSPRVEATLRLYRALREEGFSQVGIVL---QSYLYRT 189
Query: 193 LNEVITDLNQAK---RQKFYFGAKLVRGAYIE 221
+ + DL + R LV+GAY E
Sbjct: 190 E-KDLLDLLPYRPNLR--------LVKGAYRE 212
Score = 30.7 bits (70), Expect = 1.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 379 LLGMCDYITFPLGQAGYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATEN 428
L G+ L + GY+ Y+PYG + PYL+RR E
Sbjct: 274 LYGVRPEEQRRLAREGYTVRAYVPYGR----------DWYPYLTRRIAER 313
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional
protein, transcripti repressor, shuttling, dimer,
oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli}
SCOP: a.176.1.1 c.1.23.2
Length = 669
Score = 40.0 bits (93), Expect = 0.001
Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 23/209 (11%)
Query: 30 VIMRARKFTSEIMGGRGNVIGQNLTQETLE--QRLQQAGITDTKKFL-EKVTKDAQGVIH 86
+I + +MG + V G+ + E L ++L++ G + L E A +
Sbjct: 243 LIRKGVDMAMRLMGEQ-FVTGETI-AEALANARKLEEKGFRYSYDMLGEAALTAADAQAY 300
Query: 87 LFPWSGLLDVDSNLSDTFRVPCLKEKRMVRLLSQLSKKEEEMFR-----NMVRRLNTLVR 141
+ + + S+ + + LS L + + RL +L
Sbjct: 301 MVSYQQAIHAIGKASNGRGIYEGPGISIK--LSALHPRYSRAQYDRVMEELYPRLKSLTL 358
Query: 142 TAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAI-----VFNTYQCYLRDTLNEV 196
A++ D+ I IDAE+ ++++L++K E + + Q Y + V
Sbjct: 359 LARQYDIGINIDAEEA----DRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCP-LV 413
Query: 197 ITDLNQ-AKRQKFYFGAKLVRGAYIEQVS 224
I L A R + +LV+GAY +
Sbjct: 414 IDYLIDLATRSRRRLMIRLVKGAYWDSEI 442
>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A,
PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein,
multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A
{Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A*
1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*
Length = 551
Score = 38.9 bits (90), Expect = 0.003
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 124 KEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAI--- 180
+ + + + RL +L A++ D+ I IDAE++ ++++L++K E +
Sbjct: 256 QYDRVMEELYPRLKSLTLLARQYDIGINIDAEES----DRLEISLDLLEKLCFEPELAGW 311
Query: 181 --VFNTYQCYLRDTLNEVITDLNQ-AKRQKFYFGAKLVRGAYIEQVS 224
+ Q Y + VI L A R + +LV+GAY +
Sbjct: 312 NGIGFVIQAYQKRCP-LVIDYLIDLATRSRRRLMIRLVKGAYWDSEI 357
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 31.9 bits (73), Expect = 0.49
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 10/66 (15%)
Query: 321 YHV-------AKSFADRRYKVSSARTYFYLNEATCERNV---EIFQDCLHAVADIGISPE 370
+H+ A + Y +L E+FQ+ L ++ +G S E
Sbjct: 256 FHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPGQERELFQETLESLRVLGFSHE 315
Query: 371 DKVICF 376
+ +
Sbjct: 316 EIISML 321
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 31.8 bits (73), Expect = 0.56
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 330 RRYKVSSARTYFYLNEATCER-----NVEIFQDCLHAVADIGISPEDKVICF 376
+ ++ ++ YLN++ C + E F+ A+ +G S E+++ F
Sbjct: 294 KALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 345
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 31.8 bits (73), Expect = 0.56
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 330 RRYKVSSARTYFYLNEATCER-----NVEIFQDCLHAVADIGISPEDKVICF 376
+ ++ +A + Y + + + + A +GIS ++ F
Sbjct: 275 KTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIF 326
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.6 bits (72), Expect = 0.61
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 330 RRYKVSSARTYFYLNEATCER-----NVEIFQDCLHAVADIGISPEDKVICF 376
+ ++ +A + Y + + + + A +GIS ++ F
Sbjct: 275 KTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIF 326
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 31.6 bits (72), Expect = 0.75
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 330 RRYKVSSARTYFYLNEATCER-----NVEIFQDCLHAVADIGISPEDKVICF 376
+ ++ ++ YLN++ C + + F+ A+ +G S E+++ F
Sbjct: 294 KALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIF 345
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 31.1 bits (71), Expect = 0.82
Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 46/160 (28%)
Query: 31 IMRARKFTSEI------------MGG----------RGNVIGQNLTQETLE---QRLQQA 65
++RA F +E+ +GG + TQE + R+Q
Sbjct: 158 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNG 217
Query: 66 G--ITDTK---------------KFLEKVTKDAQGVIHLFPWSGLLDVDSNLSDTFRVPC 108
G + + K KF + + +G + + + F
Sbjct: 218 GTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECA-FVSSQVTELPFFASKV 276
Query: 109 -LKEKRMVRL--LSQLSKKEEEMFRNMVRRLNTLVRTAKE 145
L + + L L++ E + L +
Sbjct: 277 RLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVS 316
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin
synthesis, ASB locus, structu genomics, PSI-2, protein
structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus
anthracis}
Length = 286
Score = 30.5 bits (69), Expect = 1.1
Identities = 2/28 (7%), Positives = 13/28 (46%)
Query: 125 EEEMFRNMVRRLNTLVRTAKELDVRIMI 152
++ + V R+ + + ++ +++
Sbjct: 114 SQQERQEYVNRIRMICELFAQHNMYVLL 141
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase,
phosphate-binding motif; 2.04A {Escherichia coli} PDB:
3cqi_A 3cqh_A 3cqk_A
Length = 295
Score = 29.3 bits (66), Expect = 2.4
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 124 KEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYF 159
E R L V A V + ++
Sbjct: 137 ANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPL 172
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair,
DNA binding protein; 3.41A {Mus musculus}
Length = 1323
Score = 29.5 bits (65), Expect = 3.2
Identities = 40/336 (11%), Positives = 99/336 (29%), Gaps = 42/336 (12%)
Query: 122 SKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAIV 181
+ EM ++ RL LV L+ + A + P + + ++ + + +
Sbjct: 767 QQTSPEMKGKVLSRLKDLVELQGILEKYL---AVIPDYVPPFASVDLDTLDMMPRKTFVS 823
Query: 182 FNTYQCYLRDTLNEVITDLNQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYI 241
Y+ + R+ EV + L+ KF ++ + L ++
Sbjct: 824 LQNYRAFFRELDIEVFSILHSGLVTKFILD---------TEMHTEATEVVQLGPAELLFL 874
Query: 242 VETSGSVKTLNYIVE--TSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVE-TSG 298
+E L+ +E + + G + ++ +V+ +
Sbjct: 875 LE------DLSQKLENMLTAPFAKRICCFKNKGRQNIGFSHLHQRSVQDIVHCVVQLLTP 928
Query: 299 SMKTLNYIVETSAEKIGGELPQYHVAKSFADRRYKVSSA--------RTYFYLNEATCER 350
L I L A++ A ++ ++ F T +
Sbjct: 929 MCNHLENIHNFFQCLGAEHLSADDKARATAQEQHTMACCYQKLLQVLHALFAWKGFTHQS 988
Query: 351 NVEIFQDCLHAVADIGISPEDKVICFGQLLGMCDYITFPLGQAGYSAYKYIPYGPVNRKS 410
+ L +++ E + Y+ + P +
Sbjct: 989 KHRLLHSALEVLSNRLKQMEQDQPLEELVSQSFSYLQ-----------NFHHSVPSFQCG 1037
Query: 411 IGKIIEVLPYLSRRATENKGVLEKISKE-KKLLRQE 445
+ ++ +L L ++ EK++ K+LL +
Sbjct: 1038 LY-LLRLLMALLEKSAVPNQKKEKLASLAKQLLCRA 1072
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.15A {Planctomyces limnophilus}
Length = 290
Score = 28.6 bits (64), Expect = 4.4
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 113 RMVRLLS-QLSKKEEEMFRNMVRRLNTLVRTAKELDVRIMI 152
+ L + + + +VR L+ A + +
Sbjct: 117 PAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHL 157
>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
Length = 290
Score = 28.1 bits (62), Expect = 5.6
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 372 KVICF---GQLLGMC-----DYITFPLGQAGYSAYKYIPYGPVNRKSIGKIIEVLPYLSR 423
++ +++ + + P A Y +++ + + + E L R
Sbjct: 81 ALLAETGRARVVRVGFRPGVEVHIPPSPLAPYRYLRFLLLATGREEVLRSVDEALLEERR 140
Query: 424 RATENKGVLEKISKE 438
R V E +K
Sbjct: 141 RLGPEVPVEENPAKF 155
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Length = 387
Score = 28.2 bits (62), Expect = 5.8
Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 109 LKEKRMVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYF--QPAISRL 166
+ + L + S + EE L L +TA + +++ +D Q P + ++
Sbjct: 43 FMDSVIFTLYNYASNQREEYL------LLRLFKTALQEEIKSKVDQIQEIVTGNPTVIKM 96
Query: 167 TMELMQKYNSEKAIVFNTYQCYLRDTLNEVITDLNQAKRQKFYFGAKLVRGAYIEQVSQN 226
+ + + LR L V+ ++ K I + N
Sbjct: 97 VVSFNRGARGQN---------ALRQILAPVVKEIMDDKSLNIK-----TDPVDIYKSWVN 142
Query: 227 QSVKTSGSVKTLNYIVETSGSVKTLNYIVETSGSVKTLNYIVE 269
Q +G L Y V ++ S++ + + +
Sbjct: 143 QMESQTGEASKLPYDVTPEQALAHEEVKTRLDSSIRNMRAVTD 185
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas
palustris}
Length = 365
Score = 27.8 bits (62), Expect = 7.7
Identities = 3/33 (9%), Positives = 8/33 (24%), Gaps = 2/33 (6%)
Query: 384 DYITFPLGQAGYSAYKYIPYGPVNRKSIGKIIE 416
+ P A + P ++ +
Sbjct: 285 SWRLDPKRAAQLT--STFPVALPSKVVFDAATD 315
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR
methyltransferase; carbon dioxide fixation, cobalamin,
methyltatrahydrofolate; 2.20A {Moorella thermoacetica}
SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A*
2ogy_A*
Length = 262
Score = 27.5 bits (62), Expect = 9.0
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 9/45 (20%)
Query: 347 TCERNVEIFQDCLHAVADIGISPEDKVICFGQLLGMCDYITFPLG 391
+ + + + A + G+ ED I D + P
Sbjct: 132 DSDTRLAFAMELVAAADEFGLPMEDLYI---------DPLILPAN 167
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for
structural genomics, PSI, protein structure initiative,
MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Length = 145
Score = 26.9 bits (60), Expect = 9.2
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 105 RVPCLKEKRMVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKE 145
+V +E + ++ S L K++ + ++ L ++
Sbjct: 103 KVIERRENFIEKITSDLGKEKSSKILDYLKELKGVMERNFS 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.373
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,766,284
Number of extensions: 409312
Number of successful extensions: 1115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1099
Number of HSP's successfully gapped: 42
Length of query: 466
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 369
Effective length of database: 3,993,456
Effective search space: 1473585264
Effective search space used: 1473585264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)