RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8069
(466 letters)
>d1tj1a2 c.1.23.2 (A:262-610) Proline dehydrohenase domain of
bifunctional PutA protein {Escherichia coli [TaxId:
562]}
Length = 349
Score = 70.3 bits (171), Expect = 7e-14
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Query: 124 KEEEMFRNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEK-AIVF 182
+ + + + RL +L A++ D+ I IDAE++ L +L + +
Sbjct: 80 QYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIG 139
Query: 183 NTYQCYLRDTLNEVITDLNQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTSGSVKTLNYIV 242
Q Y + + ++ A R + +LV+GAY + + + V
Sbjct: 140 FVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKV 199
Query: 243 ET 244
T
Sbjct: 200 YT 201
Score = 44.9 bits (105), Expect = 1e-05
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 14/61 (22%)
Query: 374 ICFGQLLGMCDYITFPL------GQAGYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATE 427
F L GM + + + G+ Y P G +L YL RR E
Sbjct: 247 YEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHE--------TLLAYLVRRLLE 298
Query: 428 N 428
N
Sbjct: 299 N 299
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 35.1 bits (80), Expect = 0.018
Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 29/178 (16%)
Query: 225 QNQSV---KTSGSVKT------LNYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSVK 275
+NQ V SG+ KT + ++ S + + + N ++E G+ K
Sbjct: 85 ENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKM--LLDSNPLLEAFGNAK 142
Query: 276 TLNYIVETSGSVKTLNYIVETSGSM---KTLNYIVETS-AEKIGGELPQYHV-------- 323
TL +S K + GS K NY++E S +H+
Sbjct: 143 TL-RNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGL 201
Query: 324 AKSFADRRYKVSSARTYFYLNEATCER-----NVEIFQDCLHAVADIGISPEDKVICF 376
++S D +A Y YL ++ C + F+ + A+ +G+ D+ +
Sbjct: 202 SQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIW 259
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 29.6 bits (65), Expect = 0.69
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 27/88 (30%)
Query: 88 FPWSGLLDVDSNLSDTFRVPCLKEKRMVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKELD 147
F W L ++ L+ +E + R+ R + L
Sbjct: 2 FDWQDPLVLEEQLTT----------------------DEILIRDTFRTY-----CQERLM 34
Query: 148 VRIMIDAEQTYFQPAISRLTMELMQKYN 175
RI++ F I EL
Sbjct: 35 PRILLANRNEVFHREIISEMGELGVLGP 62
>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 172
Score = 28.7 bits (64), Expect = 1.0
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 28/101 (27%)
Query: 51 QNLTQETLEQRLQQAGITDTKKFLEKVTKDAQGVIHLFPWSGLLDVDSNLSDTFRVPCLK 110
+ + R++Q G+ W G + S + +
Sbjct: 11 EGFVVDYFTHRIRQNGM---------------------EWFGAPGLPSGVQPEHEM---- 45
Query: 111 EKRMVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKELDVRIM 151
M + + KK E F +L + R + L ++
Sbjct: 46 ---MRVMGTIFEKKHAENFETFSEQLLAVPRISFSLYQDVV 83
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated
herpesvirus [TaxId: 37296]}
Length = 146
Score = 28.3 bits (63), Expect = 1.1
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 114 MVRLLSQLSKKEEEMFRNMVRRLNTLVRTAKELDVRIM 151
+ ++ L + +E +F M+ + T + M
Sbjct: 36 IKLYITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSM 73
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
{Zymomonas mobilis [TaxId: 542]}
Length = 372
Score = 29.0 bits (64), Expect = 1.1
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 160 QPAISRLTMELMQKYNSEKAIVFNTYQCYLRDTLNEVITDLNQAKRQKFYFGAKLVRGAY 219
+ L E ++ ++ I+ NTY LR + + G Y
Sbjct: 38 AATVKALKPETVRATGAD-IILGNTYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGY 96
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 296
Score = 27.6 bits (60), Expect = 2.8
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 417 VLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSG 453
+ P E K +L + + +LL ++I+ R K G
Sbjct: 204 LHPDYKIFDNEVKNILREYADSLQLLPKDIVWRKKIG 240
>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium
[TaxId: 1404]}
Length = 371
Score = 26.7 bits (59), Expect = 7.1
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 382 MCDYITFPLGQAGYSAYKYIPYGPVNRKSIGKIIEVLPYLSRRATENKGVLEKISKEKKL 441
+ + + + G + +P G + + LP +R T + +EK+
Sbjct: 259 ILKHFGREMKEQGKPSKSLLPSGMTFGEKKKLTEDDLPNEEQRQTYLGMIGTLPDEEKRR 318
Query: 442 LRQEILRRIKSGKLFYTPK 460
L E+L + L TPK
Sbjct: 319 LIHEVLAPL-GHNLMVTPK 336
>d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 26.0 bits (57), Expect = 7.4
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 6/39 (15%)
Query: 384 DYITFPLGQAGYSAYKYIPYGPVNRK------SIGKIIE 416
D++ + L Q GY GP + G E
Sbjct: 15 DFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFE 53
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal
domain {Chlorella virus PBCV-1 [TaxId: 10506]}
Length = 188
Score = 26.0 bits (56), Expect = 7.5
Identities = 11/103 (10%), Positives = 29/103 (28%)
Query: 130 RNMVRRLNTLVRTAKELDVRIMIDAEQTYFQPAISRLTMELMQKYNSEKAIVFNTYQCYL 189
R N+++ + D E + T +M + A + Y+
Sbjct: 41 RTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYV 100
Query: 190 RDTLNEVITDLNQAKRQKFYFGAKLVRGAYIEQVSQNQSVKTS 232
D + D + + ++ A ++ + +
Sbjct: 101 TDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINN 143
>d1qexa_ b.32.1.1 (A:) gp9 {Bacteriophage T4 [TaxId: 10665]}
Length = 288
Score = 26.4 bits (58), Expect = 7.7
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 265 NYIVETSGSVKTLNYIVETSGSVKTLNYIVETSGSMKTLNYIVETSAEKIGG 316
+ ++TS + G + + ++GS+ N + + + I G
Sbjct: 84 RHDIDTSTVGVKVII---ERGELGDCVEFINSNGSISVTNPLTIQAIDSIKG 132
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 26.2 bits (57), Expect = 8.1
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 3 RATYGTGITAIKLTALGRPQLLLQLSEVIMRARKFTSEIMGGRGNVIGQNLTQ 55
+ + + L+ E ++ A G G +G+N+ Q
Sbjct: 190 KVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEA--------GALGIAVGRNVWQ 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.373
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,620,707
Number of extensions: 75293
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 18
Length of query: 466
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 377
Effective length of database: 1,185,626
Effective search space: 446981002
Effective search space used: 446981002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)