BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8070
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A0D|A Chain A, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|B Chain B, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|C Chain C, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|D Chain D, Xylose Isomerase From Bacillus Stearothermophilus
Length = 440
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 32 PAIKDPLDLSFANPEAAFKSKTTWEVLRAYIVY 64
PA K+PL F NPE KT E LR + Y
Sbjct: 14 PASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAY 46
>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
Length = 1026
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 79 LMKVGKAILGQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDIS 138
L G A+L + + + + ++ F+ GE + V L++L G ++D E +S
Sbjct: 118 LGSFGGAVLNKVLTSNIEEMA--RQFIVGETTKEAVKNLEKLRKDGFAAVVDVLGEATLS 175
Query: 139 QEEAE 143
+EEAE
Sbjct: 176 EEEAE 180
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 65 QLCSSSFLVDNNMKLMKVGKAILGQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFG 124
++C F+VDNN + G+ + ++ Q+++ +D+Y I P + FG
Sbjct: 618 RICRPLFIVDNNPNSERRGELCIRKEHIQQLIE---------DKDRYDIDPEQR----FG 664
Query: 125 VKPILDYSVEEDISQEEAEKRELEASTSELEQTKEAAA 162
++ + E + EE E + S +LE +++ A
Sbjct: 665 WTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQA 702
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 88 GQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGV-----KP--ILDYSVEED 136
G ++F ++++ FY A ++++ +K LH G+ KP +L YS++ED
Sbjct: 100 GGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDED 155
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 88 GQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGV-----KP--ILDYSVEED 136
G ++F ++++ FY A ++++ +K LH G+ KP +L YS++ED
Sbjct: 100 GGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDED 155
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 88 GQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGV-----KP--ILDYSVEED 136
G ++F ++++ FY A ++++ +K LH G+ KP +L YS++ED
Sbjct: 100 GGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDED 155
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 88 GQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGV-----KP--ILDYSVEED 136
G ++F ++++ FY A ++++ +K LH G+ KP +L YS++ED
Sbjct: 100 GGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDED 155
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 94 QVMKLTFYGHFVAGEDQYKIVPVLKRLHS 122
Q +K+ F GH V GE Q+KI+ ++ + +
Sbjct: 162 QNVKVIFSGHEVPGEGQHKIMDYIRAIRA 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,697,427
Number of Sequences: 62578
Number of extensions: 169574
Number of successful extensions: 527
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 14
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)