BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8070
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04499|PROD_DROME Proline dehydrogenase 1, mitochondrial OS=Drosophila melanogaster
GN=slgA PE=1 SV=2
Length = 681
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
Query: 22 QKKHASQSATPAIKDPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMK 81
Q+K+ S + +P +DPLD+SF +P AAFKSKTT E++RAY+VY +CSS LV++NM LMK
Sbjct: 99 QEKNPSPAGSPQ-RDPLDVSFNDPIAAFKSKTTGELIRAYLVYMICSSEKLVEHNMTLMK 157
Query: 82 VGKAILGQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEE 141
+ + +LGQK+F +MK +FYGHFVAGE+++ IVP L+RL SFGVKPILDYSVEEDI+QEE
Sbjct: 158 LARNLLGQKLFVLLMKSSFYGHFVAGENRHTIVPALERLRSFGVKPILDYSVEEDITQEE 217
Query: 142 AEKRELEASTSELEQTKEAAAITE 165
AEKRE+E+S S KE ++ +
Sbjct: 218 AEKREVESSVSSAGDKKEEGSMPQ 241
>sp|O43272|PROD_HUMAN Proline dehydrogenase 1, mitochondrial OS=Homo sapiens GN=PRODH
PE=1 SV=3
Length = 600
Score = 125 bits (315), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/129 (47%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 29 SATPAIKDPLD-LSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAIL 87
SAT A++ P+ + F N + A++S+ TWE+ R+ +V +LC+ L+ + +L+ V + +L
Sbjct: 42 SAT-AVRPPVPAVDFGNAQEAYRSRRTWELARSLLVLRLCAWPALLARHEQLLYVSRKLL 100
Query: 88 GQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKREL 147
GQ++F ++MK+TFYGHFVAGEDQ I P+L+ +FGV ILDY VEED+S EEAE +E+
Sbjct: 101 GQRLFNKLMKMTFYGHFVAGEDQESIQPLLRHYRAFGVSAILDYGVEEDLSPEEAEHKEM 160
Query: 148 EASTSELEQ 156
E+ TS E+
Sbjct: 161 ESCTSAAER 169
>sp|Q9WU79|PROD_MOUSE Proline dehydrogenase 1, mitochondrial OS=Mus musculus GN=Prodh
PE=2 SV=2
Length = 599
Score = 121 bits (304), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/133 (45%), Positives = 96/133 (72%), Gaps = 1/133 (0%)
Query: 30 ATPAIKDPLD-LSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILG 88
A A++ P+ + F N + A++S+ +WE++R +V +LC+S L+ ++ +L +V + +LG
Sbjct: 41 AAKAVRPPVPAVDFTNTQEAYRSRRSWELVRNLLVLRLCASPVLLAHHEQLFQVARKLLG 100
Query: 89 QKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKRELE 148
Q+MF ++MK+TFYGHFVAGEDQ I P+++ +FGV ILDY VEED+S EEAE++E+E
Sbjct: 101 QRMFERLMKMTFYGHFVAGEDQESIRPLIRHNKAFGVGFILDYGVEEDLSPEEAERKEME 160
Query: 149 ASTSELEQTKEAA 161
+ TSE E+ A
Sbjct: 161 SCTSEAERDGSGA 173
>sp|Q148G5|PROD_BOVIN Proline dehydrogenase 1, mitochondrial OS=Bos taurus GN=PRODH PE=2
SV=1
Length = 593
Score = 119 bits (297), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/130 (41%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 27 SQSATPAIKDPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAI 86
+++A P + + F N + A++S+ +WE+ R+ +V LC+S L+ + +L+ + + +
Sbjct: 43 AETARPPVPA---VDFGNTQEAYRSRRSWELARSLLVLSLCASPALLARHEQLLHLARKL 99
Query: 87 LGQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKRE 146
LGQ++F +MK+TFYG FVAGEDQ I P+++ +FGV ILDY VEED++ EEAE+ E
Sbjct: 100 LGQRLFNTLMKMTFYGQFVAGEDQESIRPLIQHNRAFGVGSILDYGVEEDLTPEEAERTE 159
Query: 147 LEASTSELEQ 156
+E+ +S LE+
Sbjct: 160 MESCSSALER 169
>sp|O45228|PROD_CAEEL Proline dehydrogenase 1, mitochondrial OS=Caenorhabditis elegans
GN=B0513.5 PE=3 SV=2
Length = 616
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 90/137 (65%), Gaps = 3/137 (2%)
Query: 36 DPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILGQKMFAQV 95
+ LDLSF N + AFKSK+ E++RA +V +LC LV+ N ++ + +LG+ +F +
Sbjct: 55 NRLDLSFENTKEAFKSKSNTELVRALVVLRLCGIQTLVNQNQIILNTMRRVLGKNLFKKT 114
Query: 96 MKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKRELEASTSELE 155
+K TF+GHFVAGE + ++ V+++L ++GVK ILDYSVE DI+ +EA + ++ ++
Sbjct: 115 LKNTFFGHFVAGETEEEVRHVVEKLRNYGVKSILDYSVEADITSQEATDKTVKGTSV--- 171
Query: 156 QTKEAAAITEDVALKCL 172
T + AA+T V K L
Sbjct: 172 ATVKPAAMTPVVDAKTL 188
>sp|Q6PAY6|PROD2_XENLA Probable proline dehydrogenase 2 OS=Xenopus laevis GN=prodh2 PE=2
SV=1
Length = 466
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 40 LSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILGQKMFAQVMKLT 99
LSF++ FK K++WEV R +++++CS LV ++ K++ V + +LG+++F MK +
Sbjct: 42 LSFSD-GGVFKLKSSWEVARGLLIFRMCSFPSLVKHSEKMLSVSRRLLGRRLFEWGMKGS 100
Query: 100 FYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKRELEASTSELEQTKE 159
YG FVAGE +I + RL G+ P+L +EED+ Q ++ +R E + S + +
Sbjct: 101 VYGQFVAGETLPEIRVCVDRLRQLGIHPMLAVPIEEDLGQAKSGERWYEQNESIMLDCVD 160
Query: 160 AAAITED 166
+A D
Sbjct: 161 LSAAGGD 167
>sp|A6QQ74|PROD2_BOVIN Probable proline dehydrogenase 2 OS=Bos taurus GN=PRODH2 PE=2 SV=1
Length = 461
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 30 ATPAIKDPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILGQ 89
A P+ LSF AF K+ E+ RA +V +LC+ LV + + L + +LG
Sbjct: 12 AGPSPGSWQPLSFDG--GAFHLKSIGELTRALLVLRLCAWPPLVTHGLALQAWSQRLLGS 69
Query: 90 KMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEED 136
++ +++ + YG FVAGE ++ + +L + G++P+L EE+
Sbjct: 70 RLSGALLRASIYGQFVAGETAEEVRSCVLQLQNLGLRPLLAVPTEEE 116
>sp|Q9UF12|PROD2_HUMAN Probable proline dehydrogenase 2 OS=Homo sapiens GN=PRODH2 PE=2
SV=1
Length = 536
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 27 SQSATPAIKDPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAI 86
SQ+ P+ + LSF AF K T E+ RA +V +LC+ LV + + L + +
Sbjct: 86 SQAGPPS-RGWQSLSFDG--GAFHLKGTGELTRALLVLRLCAWPPLVTHGLLLQAWSRRL 142
Query: 87 LGQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEED 136
LG ++ ++ + YG FVAGE ++ +++L + ++P+L EE+
Sbjct: 143 LGSRLSGAFLRASVYGQFVAGETAEEVKGCVQQLRTLSLRPLLAVPTEEE 192
>sp|Q86H28|PROD_DICDI Proline dehydrogenase 1, mitochondrial OS=Dictyostelium discoideum
GN=prodh PE=3 SV=1
Length = 572
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%)
Query: 51 SKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILGQKMFAQVMKLTFYGHFVAGEDQ 110
SK+T E+ +++ ++CS +F+ DN+ K + + + + K +K +F+ F AGE
Sbjct: 152 SKSTGELFFTFMILKVCSINFISDNSQKFLNLFEKLGLSKPLNFFIKYSFFKQFCAGETI 211
Query: 111 YKIVPVLKRLHSFGVKPILDYSVEE 135
+ ++L+ G+ ILDY++EE
Sbjct: 212 RETEIFTEKLNKLGIGTILDYAIEE 236
>sp|O74524|PROD_SCHPO Probable proline dehydrogenase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC70.03c PE=3 SV=1
Length = 492
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 49 FKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILGQKMFAQVMKLTFYGHFVAGE 108
+ ++ + VLR+ VY++CS ++LV ++ M + ++ + TFY HF GE
Sbjct: 51 LQHRSLFSVLRSAFVYEICSRAWLVKLSLGAMSLCDVFHLSFLYNPFCRYTFYKHFCGGE 110
Query: 109 DQYKIVPVLKRLHSFGVKPILDYSVEEDISQE 140
++ + L + G+ L+YS E D+ +
Sbjct: 111 TPQAVMATMDTLQAAGITSCLNYSREVDLDGD 142
>sp|Q2V057|PROD2_RAT Probable proline dehydrogenase 2 OS=Rattus norvegicus GN=Prodh2
PE=2 SV=1
Length = 456
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 47 AAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILGQKMFAQVMKLTFYGHFVA 106
AF K T E+ RA +V +LC+ LV + + + +LG ++ +++ + YG FVA
Sbjct: 27 GAFHLKRTAELARALLVLRLCAWPPLVTHGLAFQAWSQRLLGSRLSGALLRASIYGQFVA 86
Query: 107 GEDQYKIVPVLKRLHSFGVKPILDYSVEED 136
GE ++ +++L + G++P+L EE+
Sbjct: 87 GETAEEVRGCVQQLQAIGLQPLLAVPTEEE 116
>sp|Q8VCZ9|PROD2_MOUSE Probable proline dehydrogenase 2 OS=Mus musculus GN=Prodh2 PE=2
SV=1
Length = 456
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 47 AAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILGQKMFAQVMKLTFYGHFVA 106
AF K T E+ RA +V +LC+ LV + + + +LG ++ +++ + YG FVA
Sbjct: 27 GAFHVKGTAELARALLVLRLCAWPPLVTHGLAFQAWSQRLLGSRLSGALLRASIYGQFVA 86
Query: 107 GEDQYKIVPVLKRLHSFGVKPILDYSVEED 136
GE ++ + +L + G++P+L EE+
Sbjct: 87 GETAEEVRNCVGQLQALGLQPLLAVPTEEE 116
>sp|Q6NKX1|PROD2_ARATH Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana
GN=POX2 PE=2 SV=1
Length = 476
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 35 KDPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLM--KVGKAILGQKMF 92
K +DL ++ F S +LR+ + S +VD LM K+ + + +
Sbjct: 37 KPEVDLDLSDQARLFASVPISTLLRSTAILHATSIGPMVDLGSWLMSSKLMDTTVTRDLV 96
Query: 93 AQVMKLTFYGHFVAGEDQYKIVPVLKRLH-SFGVKPILDYSVE 134
+++K TFY HF AGED + ++ S G+K +L Y VE
Sbjct: 97 LRIVKGTFYDHFCAGEDAAAAARRVSSVYESTGLKGMLVYGVE 139
>sp|Q833U3|LACA_ENTFA Galactose-6-phosphate isomerase subunit LacA OS=Enterococcus
faecalis (strain ATCC 700802 / V583) GN=lacA PE=3 SV=1
Length = 142
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 30 ATPAIKDPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCS--SSFLV--DNNMKLMKVGKA 85
A +KD L S T ++ IV +L S+++ NN +++ VG
Sbjct: 48 AHEVLKDTESLGIVFDGYGAGSFMTAAKIKGMIVAELSDERSAYMAREHNNARMITVGAK 107
Query: 86 ILGQKMFAQVMKLTFYGHFVAGEDQYKI 113
I+G ++ ++K GH+ G Q ++
Sbjct: 108 IVGTELAKNIIKEFLTGHYAGGRHQIRV 135
>sp|Q99NH2|PARD3_MOUSE Partitioning defective 3 homolog OS=Mus musculus GN=Pard3 PE=1 SV=2
Length = 1333
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 83 GKAILGQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEA 142
G AI ++ A + G +AG+ Q ++V +L+ G +L + QEEA
Sbjct: 497 GAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFR------QEEA 550
Query: 143 -EKRELEASTSELEQTKEAAAITEDVAL 169
RE+ A S+++ KE A EDV L
Sbjct: 551 FHPREMNAEPSQMQTPKETKAEDEDVVL 578
>sp|Q9Z340|PARD3_RAT Partitioning defective 3 homolog OS=Rattus norvegicus GN=Pard3 PE=1
SV=1
Length = 1337
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 83 GKAILGQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEA 142
G AI ++ A + G +AG+ Q ++V +L+ G +L + QEEA
Sbjct: 497 GAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFR------QEEA 550
Query: 143 -EKRELEASTSELEQTKEAAAITEDVAL 169
RE+ A S+++ KE A ED+ L
Sbjct: 551 FHPREMNAEPSQMQSPKETKAEDEDIVL 578
>sp|Q5UNX8|YR722_MIMIV Uncharacterized protein R722 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R722 PE=1 SV=1
Length = 872
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 75 NNMKLMKVGKAILGQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVE 134
NN K + K I G Q + L+ + E IV L ++ + VK L+ S
Sbjct: 103 NNSKYKNIIKQIFGANTIKQGIYLSSDYQKIIPEKSSNIVFELGEIYYYPVKHKLNLSKY 162
Query: 135 EDISQEEAEKRELE 148
+DIS E+++ E+E
Sbjct: 163 DDISDVESQRHEIE 176
>sp|C0MDX6|LACA_STRS7 Galactose-6-phosphate isomerase subunit LacA OS=Streptococcus equi
subsp. zooepidemicus (strain H70) GN=lacA PE=3 SV=1
Length = 141
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 75 NNMKLMKVGKAILGQKMFAQVMKLTFYGHFVAGEDQYKI 113
NN ++M +G I+GQ++ + K GH+ G Q ++
Sbjct: 96 NNARMMTMGAEIVGQELAKNIAKGFVTGHYDGGRHQIRV 134
>sp|P92983|PROD1_ARATH Proline dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana
GN=POX1 PE=1 SV=2
Length = 499
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 36 DPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLM--KVGKAILGQKMFA 93
D LDLS + F S T ++LR+ V + +VD +M K+ A + + M
Sbjct: 61 DGLDLS--DQARLFSSIPTSDLLRSTAVLHAAAIGPMVDLGTWVMSSKLMDASVTRGMVL 118
Query: 94 QVMKLTFYGHFVAGEDQYKIVPVLKRLH-SFGVKPILDYSVEE 135
++K TFY HF AGED ++ ++ + G+K +L Y VE
Sbjct: 119 GLVKSTFYDHFCAGEDADAAAERVRSVYEATGLKGMLVYGVEH 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,932,057
Number of Sequences: 539616
Number of extensions: 2252083
Number of successful extensions: 9926
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9878
Number of HSP's gapped (non-prelim): 54
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)