RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8070
(173 letters)
>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A,
PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein,
multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A
{Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A*
1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*
Length = 551
Score = 29.6 bits (66), Expect = 0.58
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 46 EAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILGQKMFAQVMKLTFYGHFV 105
+ F + TW +L + + + L + +++ L +K M+L FV
Sbjct: 117 PSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRL-MGEQFV 175
Query: 106 AGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKR 145
GE + + ++L G + D E ++ +A+
Sbjct: 176 TGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAY 215
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 28.8 bits (65), Expect = 0.74
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 102 GHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKR 145
+VAGE + + + L GV ILD E ++EEA
Sbjct: 53 RRYVAGETLEEALKAAEALEREGVHAILDLLGEMVRTEEEARAF 96
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 28.8 bits (65), Expect = 0.94
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 11/52 (21%)
Query: 122 SFGVKPIL-----------DYSVEEDISQEEAEKRELEASTSELEQTKEAAA 162
+G+ + Y V E + E ++ +E + EL E
Sbjct: 271 EYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDEMEQVK 322
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 28.2 bits (63), Expect = 1.2
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 130 DYSVEEDISQEEAEKRELEASTSELEQTKEAAA 162
DY + D+S ++ ++ S +EL K+ A
Sbjct: 321 DYELATDVSNDDFLWERIKKSEAELLAEKKCVA 353
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional
protein, transcripti repressor, shuttling, dimer,
oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli}
SCOP: a.176.1.1 c.1.23.2
Length = 669
Score = 28.5 bits (63), Expect = 1.3
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 44 NPEAAFKSKTTWEVLRAYIVYQLCSSSFLVDNNMKLMKVGKAILGQKMFAQVMKLTFYGH 103
+ F + TW +L + + + L + +++ L +K M+L
Sbjct: 200 RSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRL-MGEQ 258
Query: 104 FVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKR 145
FV GE + + ++L G + D E ++ +A+
Sbjct: 259 FVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAY 300
>3dkt_A Maritimacin; enzyme encapsulation, nanocompartment, oxidative
stress, FER like protein, HK97-fold, antibiotic; 3.10A
{Thermotoga maritima}
Length = 265
Score = 28.3 bits (63), Expect = 1.4
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 101 YGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKRELEASTSELEQTKEA 160
G D+ ++V R P+++ + E + E +L +E
Sbjct: 52 LGEVEVLSDENEVVKWGLRK----SLPLIELRATFTLDLWELDNLERGKPNVDLSSLEET 107
Query: 161 A---AITEDVAL 169
A ED +
Sbjct: 108 VRKVAEFEDEVI 119
>2rm8_A Sensory rhodopsin II transducer; protein, chemotaxis, chromophore,
membrane, methylation, photoreceptor protein, receptor;
NMR {Natronomonas pharaonis}
Length = 68
Score = 26.4 bits (58), Expect = 1.5
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 132 SVEEDISQEEAEKRELEASTSELEQTKE 159
SV + + + + E + E+
Sbjct: 31 SVRTSLEDAKNAREDAEQAQKRAEEINT 58
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 26.9 bits (60), Expect = 3.2
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 130 DYSVEEDISQEEAEKRELEASTSELEQTKEAAA 162
+Y + + +S + + + + +EL + +
Sbjct: 293 EYKIVQGLSIDAFSQERINVTLNELLEEQNGVQ 325
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 27.0 bits (60), Expect = 3.7
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 130 DYSVEEDISQEEAEKRELEASTSELEQTKEAAA 162
+ + E + + + +++ + EL + KE A
Sbjct: 295 TWKIVEGLPINDFSREKMDLTAKELAEEKETAF 327
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 4.0
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 15/43 (34%)
Query: 134 EEDISQEEAE--------------KRELEASTSELEQTKEAAA 162
+ D +E E + + AS ++ +E A
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELD-AASKVMEQEWREKAK 117
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 26.7 bits (60), Expect = 5.2
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 134 EEDISQEEAEKRELEASTSELEQTKEAAAITED 166
E+++ + ++ A EL++ ++A +T D
Sbjct: 235 EDELIAYQDKRERYFADKKELQKLRDADTVTVD 267
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling
protein; HET: FMN; 2.63A {Pseudomonas putida}
Length = 162
Score = 25.7 bits (57), Expect = 6.7
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 132 SVEEDISQEEAEKRELEASTSELEQTKEA 160
+++D+S++ +REL + + + A
Sbjct: 134 GIQKDVSRQVELERELAELRARPKPDERA 162
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM,
PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus
subtilis} PDB: 2pr6_A*
Length = 132
Score = 25.2 bits (56), Expect = 9.5
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 127 PILD------YSVEEDISQEEAEKRELEASTSELEQ 156
P+ ++ DI++++ ++ LE S +E+
Sbjct: 95 PMEIEDKTYFVGIQNDITKQKEYEKLLEDSLTEITA 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.359
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,532,981
Number of extensions: 139703
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 25
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)