RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8070
         (173 letters)



>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum
           arcticum [TaxId: 87645]}
          Length = 171

 Score = 32.5 bits (73), Expect = 0.012
 Identities = 16/148 (10%), Positives = 39/148 (26%), Gaps = 12/148 (8%)

Query: 15  HGKVQFLQKKHASQSATPAIKDPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVD 74
           H    +   ++A            D ++               +         +S+    
Sbjct: 32  HSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSAASAA--- 88

Query: 75  NNMKLMKVGKAILGQKMFAQVMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVE 134
            N  +  +   +LG       M +   G +   E      PV     +   K +   S++
Sbjct: 89  -NAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPV--TTENGEYKIVQGLSID 145

Query: 135 EDISQEEAEKRELEASTSELEQTKEAAA 162
                    +  +  + +EL + +    
Sbjct: 146 AF------SQERINVTLNELLEEQNGVQ 167


>d1tj1a2 c.1.23.2 (A:262-610) Proline dehydrohenase domain of
           bifunctional PutA protein {Escherichia coli [TaxId:
           562]}
          Length = 349

 Score = 32.5 bits (73), Expect = 0.019
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 107 GEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKR 145
           GE   + +   ++L   G +   D   E  ++  +A+  
Sbjct: 1   GETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAY 39


>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
           (Sorghum vulgare), chloroplast [TaxId: 4558]}
          Length = 188

 Score = 29.6 bits (66), Expect = 0.15
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 123 FGVKPILD----YSVEEDISQEEAEKRELEASTSELEQTKEAAA 162
           F +         Y +  D+S ++     ++ S +EL   K+  A
Sbjct: 127 FSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVA 170


>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 179

 Score = 27.0 bits (59), Expect = 1.0
 Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 95  VMKLTFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEAEKRELEASTSEL 154
           +  ++    +   +D     PV   +     K +    + +        + +++ +  EL
Sbjct: 114 MGIISDGNSYGVPDDLLYSFPV--TIKDKTWKIVEGLPINDF------SREKMDLTAKEL 165

Query: 155 EQTKEAAA 162
            + KE A 
Sbjct: 166 AEEKETAF 173


>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
           thermophilus [TaxId: 274]}
          Length = 173

 Score = 26.6 bits (58), Expect = 1.1
 Identities = 20/149 (13%), Positives = 41/149 (27%), Gaps = 14/149 (9%)

Query: 15  HGKVQFLQKKHASQSATPAIKDPLDLSFANPEAAFKSKTTWEVLRAYIVYQLCSSSFLVD 74
           H    F    HA     PA++      +        ++    +++A       S++    
Sbjct: 33  HSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAI 92

Query: 75  NNMKLMKVGKAILGQKMFAQVMKLTF-YGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSV 133
            +++        LG      V       G +   E      PV         + +    +
Sbjct: 93  EHIR-----DWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVT--AKDGAYRVVEGLEI 145

Query: 134 EEDISQEEAEKRELEASTSELEQTKEAAA 162
            E        ++ +E +  EL    E   
Sbjct: 146 NEF------ARKRMEITAQELLDEMEQVK 168


>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 177

 Score = 24.7 bits (54), Expect = 5.1
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 99  TFYGHFVAGEDQYKIVPVLKRLHSFGVKPILDYSVEEDISQEEA 142
            FYGHF            + R  S+      + +V+E I  +  
Sbjct: 101 RFYGHFFNRSSDLCAFSTMPRDQSYLF----EVNVDESIMADYC 140


>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus
           subtilis [TaxId: 1423]}
          Length = 118

 Score = 24.2 bits (52), Expect = 7.0
 Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 99  TFYGHFVAGEDQYKIVPVLKRLHSFG-----VKPILDYSVEEDISQEEAEKRELEASTSE 153
               +    + Q   + ++K L   G     +K   D  +EE  +    ++R++      
Sbjct: 36  PDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDF 95

Query: 154 LEQTKEAAAITED 166
           L   ++  ++ + 
Sbjct: 96  LSALEQTISLVKK 108


>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
           (G) domain {Thermus thermophilus [TaxId: 274]}
          Length = 276

 Score = 24.7 bits (53), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 112 KIVPVL--KRLHSFGVKPILDYSVE 134
           KI PV     L + GV+ +LD  V+
Sbjct: 248 KITPVFLGSALKNKGVQLLLDAVVD 272


>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 71

 Score = 23.0 bits (50), Expect = 9.9
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 11/61 (18%)

Query: 106 AGEDQYKIVPVLKRLHSFGVK---------PILDYSVEEDISQEEAE--KRELEASTSEL 154
            G+++ +++ V++ +   G+K            D  ++  +S+EEAE  K++LE + +E+
Sbjct: 9   FGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEV 68

Query: 155 E 155
           E
Sbjct: 69  E 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 603,702
Number of extensions: 25325
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 14
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)