BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8072
         (584 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
          Length = 197

 Score = 30.8 bits (68), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 307 EDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEK 366
           EDGKE   I  EE   N+S  +  +          +   + + + ++H Q++ A+ D+E 
Sbjct: 63  EDGKEYHFISTEEMTRNISANEFLEFGS---YQGNMFGTKFETVHQIHKQNKIAILDIEP 119

Query: 367 LKMDWEVTFNNEISWLVWSVNPTSLTTQ 394
             +  ++    E+S  +  + PT   TQ
Sbjct: 120 QTL--KIVRTAELSPFIVFIAPTDQGTQ 145


>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
           Ot3
 pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
           Ot3
          Length = 117

 Score = 29.3 bits (64), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 25/75 (33%)

Query: 57  KNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRFDAETADESESKSQ 116
           K +   EL+ +IE LE R       LN +NR   ++NE ++ L Q+             Q
Sbjct: 68  KEKAVQELKEKIETLEVR-------LNALNRQEQKINEKVKELTQKI------------Q 108

Query: 117 AALRALDVCAPPAYG 131
           AALR      PP  G
Sbjct: 109 AALR------PPTAG 117


>pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant
 pdb|1AHY|B Chain B, Aspartate Aminotransferase Hexamutant
 pdb|1AHX|A Chain A, Aspartate Aminotransferase Hexamutant
 pdb|1AHX|B Chain B, Aspartate Aminotransferase Hexamutant
 pdb|1AHG|A Chain A, Aspartate Aminotransferase Hexamutant
 pdb|1AHG|B Chain B, Aspartate Aminotransferase Hexamutant
 pdb|1AHF|A Chain A, Aspartate Aminotransferase Hexamutant
 pdb|1AHF|B Chain B, Aspartate Aminotransferase Hexamutant
 pdb|1AHE|A Chain A, Aspartate Aminotransferase Hexamutant
 pdb|1AHE|B Chain B, Aspartate Aminotransferase Hexamutant
          Length = 396

 Score = 28.9 bits (63), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 104 DAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITD 142
           D+ET D + S+ +AA+RA +  +PPA+G + V  +   D
Sbjct: 264 DSETVDRAFSQMKAAIRA-NYSSPPAHGASVVATILSND 301


>pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate
           Aminotransferase To Tyrosine Aminotransferase: Chimera
           P3.
 pdb|4F5H|B Chain B, Intercoversion Of Substrate Specificity: E. Coli Aspatate
           Aminotransferase To Tyrosine Aminotransferase: Chimera
           P3
          Length = 406

 Score = 28.9 bits (63), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 104 DAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITD 142
           D+ET D + S+ +AA+RA +  +PPA+G + V  +   D
Sbjct: 274 DSETVDRAFSQMKAAIRA-NYSSPPAHGASVVATILSND 311


>pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli
           Pyridoxal-5'-phosphate Dependent Aspartate
           Aminotransferase To Tyrosine Aminotransferase: Chimera
           P4.
 pdb|4F5I|B Chain B, Substrate Specificity Conversion Of E. Coli
           Pyridoxal-5'-phosphate Dependent Aspartate
           Aminotransferase To Tyrosine Aminotransferase: Chimera
           P4
          Length = 406

 Score = 28.5 bits (62), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 104 DAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITD 142
           D+ET D + S+ +AA+RA +  +PPA+G + V  +   D
Sbjct: 274 DSETVDRAFSQMKAAIRA-NYSSPPAHGASVVATILSND 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.127    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,459,773
Number of Sequences: 62578
Number of extensions: 585149
Number of successful extensions: 2051
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 1969
Number of HSP's gapped (non-prelim): 170
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)