Query psy8072
Match_columns 584
No_of_seqs 123 out of 147
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:40:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978|consensus 100.0 6.4E-32 1.4E-36 300.7 28.9 302 162-549 3-304 (698)
2 KOG0161|consensus 98.4 0.023 5E-07 72.0 48.4 30 514-543 1319-1348(1930)
3 PF07888 CALCOCO1: Calcium bin 98.3 0.0026 5.6E-08 71.5 34.4 123 422-549 280-403 (546)
4 TIGR02168 SMC_prok_B chromosom 98.2 0.019 4.2E-07 69.2 42.4 19 511-529 469-487 (1179)
5 TIGR02168 SMC_prok_B chromosom 98.1 0.0059 1.3E-07 73.5 34.6 35 507-541 905-939 (1179)
6 PF15070 GOLGA2L5: Putative go 98.0 0.031 6.6E-07 64.4 35.8 281 222-571 83-408 (617)
7 PRK11637 AmiB activator; Provi 97.9 0.037 8E-07 60.8 32.4 21 261-281 96-116 (428)
8 PF10174 Cast: RIM-binding pro 97.9 0.11 2.3E-06 61.4 37.5 66 221-288 69-141 (775)
9 COG1196 Smc Chromosome segrega 97.9 0.16 3.4E-06 62.8 41.7 53 236-288 228-280 (1163)
10 PRK02224 chromosome segregatio 97.8 0.14 3.1E-06 60.9 49.8 13 411-423 537-549 (880)
11 PF07888 CALCOCO1: Calcium bin 97.8 0.1 2.2E-06 59.1 40.3 63 431-497 345-407 (546)
12 KOG0161|consensus 97.8 0.25 5.4E-06 63.1 47.9 68 217-284 941-1008(1930)
13 PF12128 DUF3584: Protein of u 97.8 0.2 4.4E-06 62.0 42.0 70 464-535 681-750 (1201)
14 COG1196 Smc Chromosome segrega 97.8 0.19 4.1E-06 62.1 39.5 64 225-288 238-301 (1163)
15 COG4942 Membrane-bound metallo 97.8 0.1 2.3E-06 57.2 32.8 117 399-530 135-251 (420)
16 TIGR00606 rad50 rad50. This fa 97.7 0.32 6.8E-06 60.9 47.9 150 328-497 917-1069(1311)
17 PF00038 Filament: Intermediat 97.7 0.098 2.1E-06 54.7 36.4 68 466-536 221-288 (312)
18 TIGR00606 rad50 rad50. This fa 97.6 0.45 9.7E-06 59.6 50.9 44 505-548 1000-1045(1311)
19 KOG0976|consensus 97.5 0.2 4.3E-06 58.3 31.5 143 217-370 90-240 (1265)
20 PF14662 CCDC155: Coiled-coil 97.5 0.093 2E-06 51.9 25.0 176 232-480 7-191 (193)
21 PF05701 WEMBL: Weak chloropla 97.5 0.31 6.8E-06 55.2 35.9 173 327-546 172-345 (522)
22 PF00261 Tropomyosin: Tropomyo 97.4 0.099 2.1E-06 53.2 25.5 141 328-497 93-233 (237)
23 KOG0977|consensus 97.4 0.21 4.7E-06 56.5 29.8 65 466-530 308-383 (546)
24 PRK11637 AmiB activator; Provi 97.4 0.17 3.6E-06 55.7 28.6 72 221-292 49-120 (428)
25 KOG4643|consensus 97.4 0.54 1.2E-05 56.1 44.3 44 32-75 171-214 (1195)
26 PRK03918 chromosome segregatio 97.4 0.53 1.1E-05 56.0 39.8 28 466-493 403-430 (880)
27 PF10174 Cast: RIM-binding pro 97.3 0.6 1.3E-05 55.3 38.5 330 166-553 133-508 (775)
28 KOG0996|consensus 97.3 0.72 1.6E-05 55.9 35.9 65 511-575 564-639 (1293)
29 PF15070 GOLGA2L5: Putative go 97.3 0.39 8.4E-06 55.6 30.6 56 235-293 6-61 (617)
30 KOG0250|consensus 97.3 0.8 1.7E-05 55.3 41.0 189 328-577 317-519 (1074)
31 KOG0977|consensus 97.2 0.64 1.4E-05 52.8 35.4 65 225-289 147-211 (546)
32 PRK02224 chromosome segregatio 97.1 1 2.2E-05 53.8 52.0 63 220-282 315-377 (880)
33 KOG0996|consensus 97.1 1.2 2.5E-05 54.3 44.4 230 232-529 376-609 (1293)
34 KOG0995|consensus 97.1 0.81 1.7E-05 51.9 41.5 317 158-541 214-577 (581)
35 KOG0976|consensus 97.1 1 2.2E-05 52.7 43.7 66 215-280 245-310 (1265)
36 PF00038 Filament: Intermediat 96.9 0.65 1.4E-05 48.5 32.3 67 222-288 64-130 (312)
37 KOG0612|consensus 96.9 1.1 2.4E-05 54.5 30.1 54 234-287 488-541 (1317)
38 KOG0999|consensus 96.9 0.31 6.7E-06 54.8 23.6 233 222-499 11-260 (772)
39 PF04849 HAP1_N: HAP1 N-termin 96.9 0.15 3.2E-06 54.0 20.2 142 401-546 150-305 (306)
40 KOG0971|consensus 96.8 1.9 4.1E-05 51.2 30.6 57 339-423 323-380 (1243)
41 KOG0933|consensus 96.7 2 4.4E-05 51.6 29.7 94 465-563 847-950 (1174)
42 KOG0978|consensus 96.7 2.1 4.5E-05 50.1 32.8 196 215-440 51-256 (698)
43 KOG4643|consensus 96.5 2.9 6.3E-05 50.3 33.5 66 222-287 260-327 (1195)
44 PRK04778 septation ring format 96.5 2.2 4.9E-05 48.8 32.7 85 328-449 257-341 (569)
45 PF12128 DUF3584: Protein of u 96.5 3.8 8.3E-05 51.1 49.0 40 61-100 276-315 (1201)
46 PF08317 Spc7: Spc7 kinetochor 96.4 0.22 4.9E-06 53.0 18.7 165 353-549 119-287 (325)
47 KOG4674|consensus 96.4 5.1 0.00011 51.3 45.7 125 411-549 759-883 (1822)
48 COG1579 Zn-ribbon protein, pos 96.3 1.6 3.5E-05 44.8 23.2 34 406-439 84-117 (239)
49 PF00261 Tropomyosin: Tropomyo 96.2 1.8 3.8E-05 44.1 28.6 35 512-546 199-233 (237)
50 KOG0994|consensus 96.2 1.5 3.3E-05 53.2 24.5 140 231-370 1561-1704(1758)
51 KOG0971|consensus 96.2 4.3 9.4E-05 48.4 30.6 74 217-290 274-347 (1243)
52 KOG1029|consensus 96.1 4.1 8.8E-05 47.9 34.0 163 344-544 440-608 (1118)
53 KOG0995|consensus 96.1 3.5 7.7E-05 46.9 30.5 53 235-287 261-313 (581)
54 KOG0963|consensus 96.1 3.8 8.2E-05 47.1 40.1 109 418-531 285-397 (629)
55 PHA02562 46 endonuclease subun 96.1 3.5 7.6E-05 46.5 32.0 31 410-440 298-328 (562)
56 KOG1853|consensus 96.0 2.2 4.8E-05 44.0 22.2 67 469-542 116-182 (333)
57 PF09730 BicD: Microtubule-ass 96.0 4.8 0.0001 47.5 39.7 78 466-546 364-448 (717)
58 KOG4674|consensus 95.9 8.3 0.00018 49.5 48.1 92 329-445 846-939 (1822)
59 PF09755 DUF2046: Uncharacteri 95.9 2.9 6.3E-05 44.5 23.0 52 469-533 150-201 (310)
60 PF09787 Golgin_A5: Golgin sub 95.9 4.3 9.2E-05 46.1 30.0 27 330-356 217-243 (511)
61 TIGR03007 pepcterm_ChnLen poly 95.9 3.9 8.6E-05 45.6 29.1 69 220-288 162-231 (498)
62 COG1340 Uncharacterized archae 95.8 3 6.6E-05 44.0 31.7 67 216-282 24-90 (294)
63 PF09755 DUF2046: Uncharacteri 95.7 3.4 7.4E-05 43.9 30.5 69 472-540 182-252 (310)
64 PF04849 HAP1_N: HAP1 N-termin 95.7 3.5 7.5E-05 43.9 24.1 91 430-531 211-304 (306)
65 COG1579 Zn-ribbon protein, pos 95.7 0.73 1.6E-05 47.3 17.2 129 412-547 53-187 (239)
66 KOG0250|consensus 95.6 8 0.00017 47.1 34.2 140 399-545 325-464 (1074)
67 PF09726 Macoilin: Transmembra 95.6 0.86 1.9E-05 53.5 19.6 118 415-547 457-575 (697)
68 TIGR03185 DNA_S_dndD DNA sulfu 95.6 6.5 0.00014 45.8 36.8 98 156-271 152-254 (650)
69 PRK04863 mukB cell division pr 95.4 12 0.00026 47.8 37.1 96 463-562 560-671 (1486)
70 PF05622 HOOK: HOOK protein; 95.3 0.017 3.8E-07 67.5 4.7 75 403-482 283-360 (713)
71 PF05557 MAD: Mitotic checkpoi 95.3 0.013 2.9E-07 68.5 3.7 177 332-543 355-536 (722)
72 PRK09039 hypothetical protein; 95.2 2.9 6.3E-05 45.1 20.9 117 223-370 43-159 (343)
73 COG5185 HEC1 Protein involved 95.1 7.4 0.00016 43.5 35.3 171 160-370 252-432 (622)
74 COG3883 Uncharacterized protei 95.0 5.5 0.00012 41.6 23.6 66 221-289 40-105 (265)
75 PF05622 HOOK: HOOK protein; 94.9 0.0073 1.6E-07 70.6 0.0 44 224-267 361-404 (713)
76 PHA02562 46 endonuclease subun 94.8 9.2 0.0002 43.1 33.0 64 225-288 212-275 (562)
77 PRK03918 chromosome segregatio 94.7 12 0.00027 44.5 51.9 22 505-526 682-703 (880)
78 PF14915 CCDC144C: CCDC144C pr 94.6 7.2 0.00016 41.3 29.2 39 332-370 121-159 (305)
79 PRK04778 septation ring format 94.6 11 0.00024 43.3 31.5 51 228-278 107-157 (569)
80 TIGR02680 conserved hypothetic 94.5 19 0.00041 45.7 29.3 35 336-370 795-829 (1353)
81 TIGR03007 pepcterm_ChnLen poly 94.5 10 0.00022 42.4 24.4 88 161-249 147-234 (498)
82 KOG0999|consensus 94.4 12 0.00025 42.8 26.5 96 330-450 152-247 (772)
83 PF09789 DUF2353: Uncharacteri 94.4 8.6 0.00019 41.2 23.4 27 505-531 198-224 (319)
84 KOG0994|consensus 94.4 17 0.00038 44.7 32.6 20 337-356 1611-1630(1758)
85 PF09728 Taxilin: Myosin-like 94.3 9 0.00019 40.9 33.1 67 474-543 211-277 (309)
86 KOG0980|consensus 94.1 11 0.00024 45.1 23.0 192 330-546 368-569 (980)
87 KOG4809|consensus 94.0 14 0.0003 42.2 32.7 285 217-569 336-643 (654)
88 PF05667 DUF812: Protein of un 94.0 15 0.00033 42.6 26.7 58 221-278 323-380 (594)
89 KOG2129|consensus 93.9 12 0.00026 41.4 21.4 99 444-546 159-286 (552)
90 PF13514 AAA_27: AAA domain 93.9 22 0.00048 44.1 45.2 33 60-92 558-590 (1111)
91 PF08317 Spc7: Spc7 kinetochor 93.9 8.1 0.00018 41.2 20.3 53 441-497 147-199 (325)
92 PF08614 ATG16: Autophagy prot 93.8 0.68 1.5E-05 45.7 11.2 119 221-370 69-187 (194)
93 smart00787 Spc7 Spc7 kinetocho 93.7 7.1 0.00015 41.7 19.3 164 355-549 116-282 (312)
94 PF06785 UPF0242: Uncharacteri 93.6 12 0.00027 40.1 22.0 119 219-367 99-220 (401)
95 KOG4360|consensus 93.5 16 0.00035 41.3 24.5 145 348-546 159-304 (596)
96 PF13870 DUF4201: Domain of un 93.5 7.8 0.00017 37.6 20.7 163 346-541 4-176 (177)
97 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.4 6 0.00013 36.8 16.1 115 418-539 3-120 (132)
98 COG4942 Membrane-bound metallo 93.1 17 0.00037 40.4 30.9 37 458-494 227-264 (420)
99 PRK09039 hypothetical protein; 93.0 7 0.00015 42.2 18.2 19 343-361 48-66 (343)
100 smart00787 Spc7 Spc7 kinetocho 93.0 7.5 0.00016 41.5 18.1 53 441-497 142-194 (312)
101 PF05701 WEMBL: Weak chloropla 92.9 20 0.00044 40.8 48.7 158 329-543 283-440 (522)
102 TIGR01005 eps_transp_fam exopo 92.9 25 0.00053 41.6 24.7 29 256-284 189-217 (754)
103 PF06160 EzrA: Septation ring 92.7 23 0.0005 40.7 43.4 228 259-544 192-420 (560)
104 KOG0964|consensus 92.6 31 0.00066 42.0 30.1 57 226-282 237-293 (1200)
105 PF09789 DUF2353: Uncharacteri 92.6 17 0.00037 39.0 20.6 178 329-538 18-224 (319)
106 PRK04863 mukB cell division pr 92.4 42 0.00091 43.2 40.9 41 330-370 438-478 (1486)
107 TIGR00634 recN DNA repair prot 92.4 18 0.0004 41.4 21.5 29 518-546 347-375 (563)
108 PF15619 Lebercilin: Ciliary p 92.3 13 0.00028 37.1 22.9 30 341-370 5-34 (194)
109 PRK01156 chromosome segregatio 92.3 32 0.00069 41.5 42.5 35 218-252 468-502 (895)
110 PF09726 Macoilin: Transmembra 92.3 30 0.00064 41.1 28.8 30 467-496 628-657 (697)
111 PF05557 MAD: Mitotic checkpoi 92.3 0.56 1.2E-05 55.1 9.5 127 409-541 501-637 (722)
112 KOG0946|consensus 92.2 31 0.00067 41.2 27.8 68 215-282 653-720 (970)
113 PF11559 ADIP: Afadin- and alp 92.1 8.7 0.00019 36.2 15.7 108 166-282 29-136 (151)
114 PF01576 Myosin_tail_1: Myosin 92.0 0.044 9.6E-07 65.5 0.0 74 218-291 172-245 (859)
115 PF10186 Atg14: UV radiation r 92.0 11 0.00024 38.7 17.6 81 466-546 68-148 (302)
116 TIGR02680 conserved hypothetic 92.0 45 0.00098 42.5 37.5 45 512-556 546-591 (1353)
117 KOG0933|consensus 91.8 39 0.00084 41.3 40.2 60 41-104 672-732 (1174)
118 KOG4673|consensus 91.7 32 0.0007 40.3 34.7 25 160-184 661-685 (961)
119 PF06160 EzrA: Septation ring 91.7 29 0.00064 39.9 41.4 166 349-547 314-488 (560)
120 PF01576 Myosin_tail_1: Myosin 91.6 0.053 1.1E-06 64.9 0.0 84 466-549 340-437 (859)
121 PF08172 CASP_C: CASP C termin 91.5 2.6 5.7E-05 43.5 12.2 32 264-295 2-33 (248)
122 PF12718 Tropomyosin_1: Tropom 91.5 13 0.00028 35.3 20.0 64 466-536 78-141 (143)
123 TIGR01005 eps_transp_fam exopo 91.4 23 0.00049 41.9 21.5 27 344-370 197-223 (754)
124 PF13514 AAA_27: AAA domain 91.4 46 0.00099 41.4 37.0 78 472-549 407-491 (1111)
125 PF10481 CENP-F_N: Cenp-F N-te 91.3 21 0.00046 37.5 18.6 61 220-287 61-121 (307)
126 PF07106 TBPIP: Tat binding pr 91.3 1.6 3.5E-05 42.0 9.8 64 465-533 76-139 (169)
127 TIGR01843 type_I_hlyD type I s 91.1 25 0.00054 37.8 22.5 24 472-495 200-223 (423)
128 PF14662 CCDC155: Coiled-coil 91.0 18 0.0004 36.1 20.9 85 463-547 97-188 (193)
129 PRK10929 putative mechanosensi 91.0 51 0.0011 41.2 33.0 82 468-549 404-518 (1109)
130 KOG2129|consensus 90.9 30 0.00065 38.4 24.8 172 252-474 134-309 (552)
131 PRK01156 chromosome segregatio 90.9 44 0.00096 40.3 39.4 76 466-541 414-500 (895)
132 TIGR01000 bacteriocin_acc bact 90.8 31 0.00067 38.4 21.2 37 520-556 287-327 (457)
133 KOG4687|consensus 90.6 25 0.00054 37.0 20.6 58 225-282 8-65 (389)
134 PF00769 ERM: Ezrin/radixin/mo 90.4 8.5 0.00018 39.7 14.7 67 216-282 51-124 (246)
135 KOG4673|consensus 90.1 45 0.00097 39.2 40.2 118 157-289 512-633 (961)
136 PRK10884 SH3 domain-containing 90.1 2.7 6E-05 42.2 10.6 74 466-549 98-171 (206)
137 PF07111 HCR: Alpha helical co 89.9 47 0.001 39.1 48.6 113 171-300 334-447 (739)
138 KOG0612|consensus 89.8 62 0.0013 40.4 39.6 63 213-275 589-651 (1317)
139 PF15397 DUF4618: Domain of un 89.8 28 0.00061 36.4 22.5 138 149-298 16-165 (258)
140 PF09486 HrpB7: Bacterial type 89.7 11 0.00025 36.4 14.0 121 160-292 14-138 (158)
141 KOG1029|consensus 89.4 54 0.0012 39.1 32.8 65 223-287 434-498 (1118)
142 KOG0804|consensus 89.2 4.4 9.6E-05 44.9 12.0 76 464-541 378-458 (493)
143 PF10498 IFT57: Intra-flagella 89.0 26 0.00056 38.2 17.7 104 412-525 246-350 (359)
144 PF07111 HCR: Alpha helical co 88.7 57 0.0012 38.5 35.0 60 483-546 374-437 (739)
145 COG1340 Uncharacterized archae 88.5 37 0.00081 36.1 32.5 43 466-511 191-233 (294)
146 KOG0979|consensus 88.4 70 0.0015 39.2 28.0 128 225-370 282-409 (1072)
147 TIGR03017 EpsF chain length de 88.4 43 0.00094 36.7 24.8 31 257-287 167-197 (444)
148 PF00769 ERM: Ezrin/radixin/mo 88.3 23 0.00049 36.6 16.0 41 506-546 85-125 (246)
149 TIGR01843 type_I_hlyD type I s 88.2 41 0.00088 36.2 19.5 23 469-491 211-233 (423)
150 PRK10929 putative mechanosensi 87.4 88 0.0019 39.1 31.4 30 253-282 57-86 (1109)
151 PF04012 PspA_IM30: PspA/IM30 87.4 33 0.00072 34.2 19.4 119 327-497 30-148 (221)
152 PF10234 Cluap1: Clusterin-ass 86.5 19 0.00041 37.8 14.2 78 210-287 160-237 (267)
153 PF13851 GAS: Growth-arrest sp 86.2 39 0.00084 33.8 20.5 84 411-497 86-172 (201)
154 PF12325 TMF_TATA_bd: TATA ele 85.9 25 0.00054 32.6 13.2 26 345-370 27-52 (120)
155 KOG1853|consensus 85.7 49 0.0011 34.6 18.9 24 347-370 51-74 (333)
156 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.7 30 0.00065 32.1 17.1 95 329-451 5-99 (132)
157 PF12718 Tropomyosin_1: Tropom 85.6 33 0.00072 32.5 15.6 60 223-282 4-63 (143)
158 PF04012 PspA_IM30: PspA/IM30 85.3 27 0.00059 34.8 14.4 47 503-549 98-144 (221)
159 PRK11281 hypothetical protein; 84.8 1.2E+02 0.0026 38.1 27.5 46 244-289 132-177 (1113)
160 PF08614 ATG16: Autophagy prot 84.4 9.1 0.0002 37.8 10.4 71 466-543 107-177 (194)
161 PF15294 Leu_zip: Leucine zipp 84.4 20 0.00044 37.8 13.3 59 464-526 218-276 (278)
162 COG0497 RecN ATPase involved i 84.4 86 0.0019 36.3 22.0 42 504-546 330-371 (557)
163 PF09728 Taxilin: Myosin-like 84.3 62 0.0013 34.6 35.1 227 215-497 25-273 (309)
164 PF09730 BicD: Microtubule-ass 84.1 1E+02 0.0022 36.8 37.1 45 411-455 265-309 (717)
165 PF05911 DUF869: Plant protein 83.9 1.1E+02 0.0023 36.9 30.6 174 257-481 20-203 (769)
166 TIGR01010 BexC_CtrB_KpsE polys 83.6 67 0.0015 34.5 17.5 33 416-448 168-200 (362)
167 PRK00295 hypothetical protein; 83.5 4.6 0.0001 33.6 6.6 62 488-555 7-68 (68)
168 KOG2991|consensus 83.4 63 0.0014 33.9 20.2 165 334-546 118-300 (330)
169 PF10146 zf-C4H2: Zinc finger- 83.3 58 0.0013 33.4 16.1 24 473-496 51-74 (230)
170 COG4026 Uncharacterized protei 83.1 28 0.00061 35.7 13.1 122 351-496 76-205 (290)
171 PRK02793 phi X174 lysis protei 82.9 3 6.4E-05 35.1 5.4 62 489-555 11-72 (72)
172 TIGR03185 DNA_S_dndD DNA sulfu 82.4 1.1E+02 0.0023 35.9 33.2 47 236-282 205-251 (650)
173 PF04156 IncA: IncA protein; 82.3 27 0.00059 33.9 12.7 36 335-370 82-117 (191)
174 KOG0018|consensus 82.0 1.4E+02 0.0031 37.0 35.5 246 246-546 226-480 (1141)
175 PF06818 Fez1: Fez1; InterPro 82.0 61 0.0013 32.7 17.5 141 329-497 12-167 (202)
176 cd07666 BAR_SNX7 The Bin/Amphi 81.9 67 0.0014 33.3 15.8 33 465-497 160-192 (243)
177 PF09738 DUF2051: Double stran 81.7 79 0.0017 33.8 21.6 83 412-494 78-166 (302)
178 KOG4005|consensus 81.6 13 0.00027 38.3 10.1 44 223-266 101-144 (292)
179 PF09787 Golgin_A5: Golgin sub 81.6 1E+02 0.0022 35.1 29.5 26 220-245 110-135 (511)
180 PF15619 Lebercilin: Ciliary p 81.1 63 0.0014 32.3 23.1 115 412-536 69-190 (194)
181 PRK00846 hypothetical protein; 80.9 6.5 0.00014 33.7 6.7 51 503-555 27-77 (77)
182 PF10267 Tmemb_cc2: Predicted 80.4 35 0.00076 37.8 13.9 24 347-370 218-241 (395)
183 PF04111 APG6: Autophagy prote 80.4 40 0.00086 36.0 14.1 74 466-546 62-135 (314)
184 PF04102 SlyX: SlyX; InterPro 80.1 4.8 0.0001 33.5 5.6 63 489-555 7-69 (69)
185 TIGR00634 recN DNA repair prot 79.7 1.2E+02 0.0026 34.8 25.2 29 466-494 344-372 (563)
186 KOG4593|consensus 79.7 1.4E+02 0.003 35.4 43.9 57 470-531 505-573 (716)
187 PRK02119 hypothetical protein; 79.4 4.8 0.0001 34.0 5.4 51 503-555 23-73 (73)
188 PF13851 GAS: Growth-arrest sp 79.2 73 0.0016 31.9 18.6 32 466-497 105-136 (201)
189 COG3074 Uncharacterized protei 79.1 18 0.0004 30.5 8.5 63 472-534 8-70 (79)
190 PF10168 Nup88: Nuclear pore c 79.0 1.5E+02 0.0033 35.4 23.4 79 217-295 541-620 (717)
191 KOG4438|consensus 78.9 97 0.0021 34.6 16.4 131 413-543 122-256 (446)
192 KOG0946|consensus 78.7 1.6E+02 0.0035 35.6 23.2 77 463-546 801-877 (970)
193 PF15397 DUF4618: Domain of un 78.6 91 0.002 32.7 25.7 62 221-282 40-102 (258)
194 PF04111 APG6: Autophagy prote 78.5 14 0.00031 39.4 10.0 42 329-370 45-86 (314)
195 PF12325 TMF_TATA_bd: TATA ele 78.4 57 0.0012 30.2 12.8 22 328-349 97-118 (120)
196 KOG0962|consensus 78.3 2E+02 0.0044 36.5 37.4 63 466-534 1013-1079(1294)
197 PLN03188 kinesin-12 family pro 77.8 1.2E+02 0.0025 38.4 18.1 169 353-541 938-1197(1320)
198 PF06818 Fez1: Fez1; InterPro 77.6 84 0.0018 31.8 15.2 64 228-291 33-96 (202)
199 KOG0963|consensus 77.6 1.5E+02 0.0033 34.6 33.8 76 219-296 19-94 (629)
200 TIGR02231 conserved hypothetic 76.9 26 0.00056 39.7 12.1 84 466-549 76-170 (525)
201 PRK00736 hypothetical protein; 76.8 8.9 0.00019 31.9 6.2 62 488-555 7-68 (68)
202 PF08826 DMPK_coil: DMPK coile 76.8 22 0.00048 29.2 8.4 45 230-274 15-59 (61)
203 KOG0964|consensus 76.7 2E+02 0.0043 35.6 43.3 72 415-486 731-810 (1200)
204 COG0419 SbcC ATPase involved i 76.4 1.9E+02 0.0041 35.2 51.9 51 50-100 230-283 (908)
205 PF04728 LPP: Lipoprotein leuc 76.2 15 0.00033 29.7 7.1 45 241-285 4-48 (56)
206 COG4372 Uncharacterized protei 76.1 1.3E+02 0.0029 33.3 22.2 53 348-435 130-185 (499)
207 PF11932 DUF3450: Protein of u 75.9 98 0.0021 31.7 15.6 62 225-286 34-95 (251)
208 PF15294 Leu_zip: Leucine zipp 75.8 1.1E+02 0.0024 32.3 24.3 56 343-423 210-265 (278)
209 PF02403 Seryl_tRNA_N: Seryl-t 75.5 23 0.0005 31.3 9.1 61 222-282 32-95 (108)
210 KOG3647|consensus 75.4 47 0.001 34.9 12.2 65 224-288 110-181 (338)
211 PF10168 Nup88: Nuclear pore c 75.4 1.9E+02 0.0041 34.6 20.3 29 503-531 685-713 (717)
212 KOG3433|consensus 75.4 26 0.00057 34.8 9.9 80 466-545 79-158 (203)
213 PF04912 Dynamitin: Dynamitin 75.3 1.3E+02 0.0029 32.8 27.2 123 348-522 261-387 (388)
214 PF10211 Ax_dynein_light: Axon 75.2 90 0.002 30.9 14.7 56 466-527 132-187 (189)
215 KOG0982|consensus 75.0 1.5E+02 0.0032 33.3 18.4 23 348-370 410-432 (502)
216 PF15456 Uds1: Up-regulated Du 74.9 49 0.0011 30.8 11.2 75 221-295 24-119 (124)
217 PF05667 DUF812: Protein of un 74.8 1.8E+02 0.0038 34.1 26.8 58 225-282 320-377 (594)
218 KOG0804|consensus 74.7 1E+02 0.0022 34.8 15.1 30 467-496 416-445 (493)
219 PRK15422 septal ring assembly 74.7 20 0.00044 30.9 7.8 64 471-534 7-70 (79)
220 PF10212 TTKRSYEDQ: Predicted 74.5 1.7E+02 0.0036 33.7 21.9 40 244-285 306-347 (518)
221 PF07106 TBPIP: Tat binding pr 74.5 53 0.0012 31.5 11.9 56 222-282 75-130 (169)
222 PF10473 CENP-F_leu_zip: Leuci 74.4 82 0.0018 30.0 18.9 71 466-546 64-134 (140)
223 PF07889 DUF1664: Protein of u 74.1 69 0.0015 30.0 12.0 84 170-289 34-117 (126)
224 PRK10361 DNA recombination pro 73.9 1.7E+02 0.0036 33.4 17.2 134 330-487 49-191 (475)
225 KOG0018|consensus 73.8 2.4E+02 0.0052 35.1 34.1 92 257-372 803-894 (1141)
226 PF14992 TMCO5: TMCO5 family 73.4 82 0.0018 33.4 13.6 65 466-535 121-185 (280)
227 PRK10884 SH3 domain-containing 73.4 48 0.001 33.4 11.6 30 254-283 132-161 (206)
228 PRK04406 hypothetical protein; 73.3 15 0.00032 31.3 6.8 35 503-537 25-59 (75)
229 KOG0243|consensus 73.2 2.4E+02 0.0053 35.0 19.5 77 466-549 481-557 (1041)
230 PRK11281 hypothetical protein; 72.8 2.6E+02 0.0057 35.2 29.6 34 252-285 71-104 (1113)
231 PF09304 Cortex-I_coil: Cortex 71.6 81 0.0018 28.8 12.2 74 222-295 33-106 (107)
232 PF10481 CENP-F_N: Cenp-F N-te 71.1 1.5E+02 0.0032 31.5 16.9 57 431-491 76-132 (307)
233 PRK15422 septal ring assembly 71.0 49 0.0011 28.6 9.3 61 350-452 6-69 (79)
234 PRK09841 cryptic autophosphory 70.9 56 0.0012 38.8 13.3 112 404-529 251-365 (726)
235 TIGR03017 EpsF chain length de 70.4 1.7E+02 0.0037 32.0 24.9 15 409-423 280-294 (444)
236 PF09744 Jnk-SapK_ap_N: JNK_SA 69.8 43 0.00093 32.5 10.0 69 214-282 77-145 (158)
237 KOG1937|consensus 69.5 2E+02 0.0044 32.5 31.8 40 332-371 387-426 (521)
238 PRK10803 tol-pal system protei 68.8 40 0.00087 35.0 10.3 40 249-288 56-95 (263)
239 KOG2010|consensus 68.8 44 0.00095 36.0 10.4 107 419-563 123-229 (405)
240 PF05483 SCP-1: Synaptonemal c 68.5 2.6E+02 0.0056 33.3 44.4 56 212-267 226-281 (786)
241 PF07889 DUF1664: Protein of u 68.2 90 0.0019 29.3 11.3 25 431-455 49-73 (126)
242 PRK15178 Vi polysaccharide exp 67.9 87 0.0019 35.2 13.1 97 417-526 241-337 (434)
243 PF13863 DUF4200: Domain of un 67.3 96 0.0021 27.9 14.1 27 431-457 6-32 (126)
244 KOG1916|consensus 66.7 3.2E+02 0.0069 33.7 20.8 150 371-527 971-1127(1283)
245 PF14197 Cep57_CLD_2: Centroso 66.6 60 0.0013 27.2 8.9 59 224-282 3-61 (69)
246 PF07303 Occludin_ELL: Occludi 65.4 91 0.002 28.0 10.5 60 335-427 9-68 (101)
247 PF15003 HAUS2: HAUS augmin-li 65.1 1.9E+02 0.0042 30.6 15.7 26 345-370 51-76 (277)
248 PF05769 DUF837: Protein of un 65.0 1.5E+02 0.0033 29.3 19.9 106 417-526 69-176 (181)
249 COG4372 Uncharacterized protei 64.9 2.3E+02 0.005 31.5 31.4 45 415-463 183-227 (499)
250 PF03961 DUF342: Protein of un 64.7 32 0.0007 38.3 9.2 98 467-565 333-434 (451)
251 KOG0962|consensus 64.5 4E+02 0.0086 34.1 26.9 76 406-484 1003-1078(1294)
252 PF14197 Cep57_CLD_2: Centroso 64.3 81 0.0018 26.4 9.3 60 221-280 7-66 (69)
253 PRK10246 exonuclease subunit S 64.1 3.7E+02 0.008 33.5 36.7 13 329-341 532-544 (1047)
254 PF03962 Mnd1: Mnd1 family; I 64.0 1.3E+02 0.0029 29.8 12.4 63 466-529 67-129 (188)
255 PRK10869 recombination and rep 63.6 2.8E+02 0.0061 32.0 24.0 41 242-282 159-199 (553)
256 PRK09841 cryptic autophosphory 63.6 3.1E+02 0.0068 32.6 19.4 35 252-286 258-292 (726)
257 PF15290 Syntaphilin: Golgi-lo 63.6 1.5E+02 0.0032 31.6 12.9 37 246-282 74-110 (305)
258 PF07798 DUF1640: Protein of u 63.5 1.5E+02 0.0033 28.8 14.7 12 431-442 57-68 (177)
259 KOG4677|consensus 63.0 2.7E+02 0.0058 31.6 22.5 70 450-519 337-421 (554)
260 COG4026 Uncharacterized protei 62.7 54 0.0012 33.7 9.3 54 219-272 149-202 (290)
261 KOG0979|consensus 62.3 3.9E+02 0.0084 33.2 31.6 111 166-289 118-230 (1072)
262 PF14817 HAUS5: HAUS augmin-li 62.1 3.3E+02 0.007 32.2 31.5 76 467-542 357-435 (632)
263 PF11932 DUF3450: Protein of u 61.9 1.9E+02 0.0042 29.5 17.3 41 330-370 24-64 (251)
264 TIGR03752 conj_TIGR03752 integ 60.9 1E+02 0.0022 34.9 12.1 22 466-487 71-92 (472)
265 PF10226 DUF2216: Uncharacteri 60.4 1.9E+02 0.0042 29.0 14.3 67 215-281 58-135 (195)
266 PF13094 CENP-Q: CENP-Q, a CEN 59.2 1.7E+02 0.0036 27.9 13.7 73 469-545 63-157 (160)
267 PF10473 CENP-F_leu_zip: Leuci 59.1 1.7E+02 0.0036 28.0 15.4 23 415-437 56-78 (140)
268 COG1842 PspA Phage shock prote 59.1 2.2E+02 0.0047 29.2 19.4 33 465-497 117-149 (225)
269 PF08172 CASP_C: CASP C termin 58.8 87 0.0019 32.5 10.4 32 251-282 3-34 (248)
270 COG2433 Uncharacterized conser 58.2 91 0.002 36.3 11.2 34 260-293 473-506 (652)
271 PRK11519 tyrosine kinase; Prov 58.2 1.9E+02 0.0042 34.3 14.5 112 404-528 251-364 (719)
272 KOG0980|consensus 58.1 4.3E+02 0.0094 32.4 29.1 37 257-293 361-397 (980)
273 PF10205 KLRAQ: Predicted coil 57.8 1.2E+02 0.0027 27.4 9.8 62 224-292 10-71 (102)
274 COG1382 GimC Prefoldin, chaper 57.6 1.6E+02 0.0036 27.4 13.3 39 402-440 4-42 (119)
275 KOG2264|consensus 57.5 53 0.0011 37.9 9.0 64 221-284 88-151 (907)
276 KOG2391|consensus 57.2 1.5E+02 0.0033 32.2 12.0 65 431-500 220-285 (365)
277 PRK11519 tyrosine kinase; Prov 56.3 4.1E+02 0.0089 31.6 19.3 33 254-286 260-292 (719)
278 KOG2991|consensus 56.0 2.7E+02 0.0058 29.4 19.6 84 328-435 218-302 (330)
279 PF03993 DUF349: Domain of Unk 55.9 56 0.0012 26.8 7.1 54 478-536 16-69 (77)
280 PF05384 DegS: Sensor protein 55.9 2E+02 0.0044 27.9 15.9 60 467-526 90-149 (159)
281 PF06785 UPF0242: Uncharacteri 55.7 3.1E+02 0.0067 30.0 15.0 24 506-529 190-213 (401)
282 PF04728 LPP: Lipoprotein leuc 55.7 75 0.0016 25.8 7.3 48 228-275 5-52 (56)
283 PF10267 Tmemb_cc2: Predicted 55.5 3.3E+02 0.0072 30.3 15.0 24 500-523 295-318 (395)
284 KOG4302|consensus 54.9 4.3E+02 0.0094 31.4 38.2 199 149-360 39-259 (660)
285 PF09304 Cortex-I_coil: Cortex 54.8 1.7E+02 0.0037 26.7 12.0 19 352-370 13-31 (107)
286 COG0216 PrfA Protein chain rel 54.6 1.4E+02 0.003 32.6 11.2 109 403-533 25-141 (363)
287 KOG3850|consensus 54.5 3.4E+02 0.0075 30.2 14.5 27 344-370 263-289 (455)
288 COG4717 Uncharacterized conser 54.4 4.9E+02 0.011 31.9 36.1 261 221-523 552-852 (984)
289 PRK00846 hypothetical protein; 54.2 1E+02 0.0022 26.6 8.3 56 245-300 4-59 (77)
290 PF02183 HALZ: Homeobox associ 54.2 49 0.0011 25.5 5.8 40 472-532 2-41 (45)
291 KOG0993|consensus 54.0 3.6E+02 0.0079 30.3 27.5 36 422-457 438-473 (542)
292 PF02183 HALZ: Homeobox associ 53.7 42 0.00091 25.8 5.4 27 467-493 11-37 (45)
293 PF05911 DUF869: Plant protein 53.6 4.8E+02 0.01 31.6 25.4 26 525-550 734-759 (769)
294 KOG2391|consensus 53.4 68 0.0015 34.8 8.7 58 485-542 228-285 (365)
295 PF07851 TMPIT: TMPIT-like pro 53.4 89 0.0019 33.9 9.7 58 224-281 2-59 (330)
296 PRK10780 periplasmic chaperone 52.7 2.2E+02 0.0047 27.3 12.7 46 403-451 31-76 (165)
297 KOG1850|consensus 52.2 3.5E+02 0.0075 29.5 34.7 70 469-541 212-281 (391)
298 PF12761 End3: Actin cytoskele 52.1 1.8E+02 0.0039 29.3 11.0 31 514-544 164-194 (195)
299 KOG0249|consensus 52.0 5E+02 0.011 31.3 20.6 39 257-295 24-62 (916)
300 PRK00409 recombination and DNA 51.7 3.3E+02 0.0071 32.9 15.1 26 211-236 147-172 (782)
301 PF12001 DUF3496: Domain of un 51.6 2E+02 0.0043 26.5 10.3 71 465-549 4-75 (111)
302 PF11559 ADIP: Afadin- and alp 51.5 2.1E+02 0.0046 26.8 16.5 42 329-370 40-81 (151)
303 KOG1962|consensus 51.4 95 0.0021 31.7 9.0 59 231-289 149-207 (216)
304 PRK00409 recombination and DNA 51.1 3.3E+02 0.0071 32.9 15.0 11 534-544 610-620 (782)
305 TIGR03545 conserved hypothetic 51.0 1.3E+02 0.0027 35.0 11.1 88 329-452 166-253 (555)
306 TIGR03752 conj_TIGR03752 integ 51.0 1.6E+02 0.0034 33.5 11.4 61 225-291 79-139 (472)
307 TIGR01069 mutS2 MutS2 family p 50.8 3.5E+02 0.0075 32.7 15.1 12 534-545 599-610 (771)
308 KOG4360|consensus 50.7 4.5E+02 0.0097 30.4 26.0 53 240-292 212-264 (596)
309 COG4985 ABC-type phosphate tra 50.6 1.7E+02 0.0037 30.4 10.6 30 464-493 217-246 (289)
310 PF12777 MT: Microtubule-bindi 50.6 91 0.002 33.5 9.5 63 225-287 227-289 (344)
311 PF12329 TMF_DNA_bd: TATA elem 50.5 1.5E+02 0.0032 25.1 8.7 54 228-281 14-67 (74)
312 TIGR02449 conserved hypothetic 50.0 1.4E+02 0.003 25.0 8.2 22 245-266 33-54 (65)
313 COG2433 Uncharacterized conser 48.7 2.5E+02 0.0054 32.9 12.7 30 466-495 479-508 (652)
314 PF07989 Microtub_assoc: Micro 48.7 1.7E+02 0.0037 24.9 9.5 67 472-541 4-74 (75)
315 KOG1899|consensus 48.4 3.8E+02 0.0082 31.7 13.9 31 516-546 216-246 (861)
316 PF05082 Rop-like: Rop-like; 48.2 44 0.00096 28.0 5.1 36 517-556 2-37 (66)
317 COG3883 Uncharacterized protei 48.2 3.6E+02 0.0077 28.5 28.0 55 228-282 33-87 (265)
318 PF14362 DUF4407: Domain of un 48.1 2.2E+02 0.0047 29.8 11.6 23 260-282 134-156 (301)
319 PF09738 DUF2051: Double stran 47.9 3.8E+02 0.0083 28.7 15.9 23 350-372 221-243 (302)
320 PF06810 Phage_GP20: Phage min 47.8 1.5E+02 0.0033 28.5 9.5 17 262-278 52-68 (155)
321 KOG1103|consensus 47.6 4.2E+02 0.0091 29.1 21.4 65 221-292 91-160 (561)
322 PF14915 CCDC144C: CCDC144C pr 46.9 4E+02 0.0086 28.7 27.4 51 229-279 59-109 (305)
323 TIGR02894 DNA_bind_RsfA transc 46.6 1E+02 0.0022 30.1 8.0 52 223-281 101-152 (161)
324 PF04102 SlyX: SlyX; InterPro 46.6 75 0.0016 26.4 6.3 43 254-296 4-46 (69)
325 PF10498 IFT57: Intra-flagella 46.5 4.3E+02 0.0094 29.0 14.7 39 244-282 270-308 (359)
326 PF13166 AAA_13: AAA domain 46.4 5.4E+02 0.012 30.1 20.7 10 552-561 484-493 (712)
327 PLN02939 transferase, transfer 46.4 6.8E+02 0.015 31.2 18.6 198 347-549 155-401 (977)
328 PRK09343 prefoldin subunit bet 46.4 2.4E+02 0.0052 25.9 12.2 96 401-496 4-113 (121)
329 PF10146 zf-C4H2: Zinc finger- 46.3 3.5E+02 0.0076 27.8 12.4 68 216-283 36-103 (230)
330 PF14362 DUF4407: Domain of un 46.2 3.7E+02 0.008 28.1 16.6 69 466-534 140-213 (301)
331 KOG4593|consensus 45.9 6E+02 0.013 30.4 38.0 39 463-501 379-417 (716)
332 PRK06569 F0F1 ATP synthase sub 44.8 3E+02 0.0066 26.7 14.4 65 463-536 64-129 (155)
333 PF10186 Atg14: UV radiation r 44.2 3.6E+02 0.0079 27.4 21.0 42 505-546 121-162 (302)
334 KOG3091|consensus 44.2 5.5E+02 0.012 29.5 18.9 51 248-298 349-399 (508)
335 PF05615 THOC7: Tho complex su 44.2 2.6E+02 0.0057 25.8 12.1 68 215-282 42-109 (139)
336 TIGR01000 bacteriocin_acc bact 44.2 4.9E+02 0.011 28.9 21.4 34 513-546 287-320 (457)
337 TIGR02338 gimC_beta prefoldin, 44.1 2.4E+02 0.0051 25.3 11.7 33 410-442 9-41 (110)
338 TIGR01069 mutS2 MutS2 family p 43.5 3.1E+02 0.0067 33.1 13.2 34 402-435 494-528 (771)
339 PF12329 TMF_DNA_bd: TATA elem 43.5 2E+02 0.0044 24.3 9.6 50 233-282 12-61 (74)
340 PRK11020 hypothetical protein; 42.7 2E+02 0.0043 26.7 8.7 110 424-580 4-113 (118)
341 PF09403 FadA: Adhesion protei 42.6 1.3E+02 0.0029 28.1 7.9 83 464-547 23-105 (126)
342 PF14643 DUF4455: Domain of un 42.4 5.5E+02 0.012 29.0 45.4 31 72-102 3-33 (473)
343 PF03938 OmpH: Outer membrane 42.2 2.1E+02 0.0045 26.7 9.5 45 403-450 24-68 (158)
344 PF10211 Ax_dynein_light: Axon 42.1 3.6E+02 0.0077 26.7 13.7 61 466-532 125-185 (189)
345 PF13747 DUF4164: Domain of un 41.5 2.4E+02 0.0053 24.7 10.0 39 257-295 35-73 (89)
346 PF13870 DUF4201: Domain of un 41.2 3.4E+02 0.0073 26.2 20.9 73 216-288 46-118 (177)
347 PF12777 MT: Microtubule-bindi 41.0 4.9E+02 0.011 28.0 19.4 71 466-543 240-310 (344)
348 PF15254 CCDC14: Coiled-coil d 40.6 7.5E+02 0.016 30.0 16.8 125 216-367 431-555 (861)
349 PF11365 DUF3166: Protein of u 40.4 36 0.00079 30.4 3.7 29 508-536 20-48 (96)
350 PRK04325 hypothetical protein; 40.3 85 0.0018 26.6 5.8 47 488-537 11-57 (74)
351 PRK10869 recombination and rep 40.3 6.4E+02 0.014 29.1 25.7 44 230-273 154-197 (553)
352 PF04899 MbeD_MobD: MbeD/MobD 40.1 2.3E+02 0.005 24.0 8.2 29 504-532 29-57 (70)
353 PRK10722 hypothetical protein; 40.0 1.7E+02 0.0036 30.5 8.8 46 244-289 159-204 (247)
354 PF10018 Med4: Vitamin-D-recep 39.6 1.8E+02 0.004 28.6 8.9 53 228-281 11-63 (188)
355 COG1382 GimC Prefoldin, chaper 39.6 3.2E+02 0.0069 25.5 11.0 41 503-543 70-110 (119)
356 cd00632 Prefoldin_beta Prefold 39.3 2.7E+02 0.0059 24.6 10.4 73 468-547 6-100 (105)
357 PRK15396 murein lipoprotein; P 39.3 1.1E+02 0.0024 26.4 6.3 28 257-284 42-69 (78)
358 PF05266 DUF724: Protein of un 39.3 4E+02 0.0087 26.5 14.3 30 464-493 127-156 (190)
359 PF05529 Bap31: B-cell recepto 39.3 1.9E+02 0.0041 28.3 9.0 30 255-284 155-184 (192)
360 PF02403 Seryl_tRNA_N: Seryl-t 39.1 2.7E+02 0.0058 24.5 12.3 62 465-530 33-94 (108)
361 PRK09973 putative outer membra 39.1 96 0.0021 27.2 6.0 34 251-284 35-68 (85)
362 PF05266 DUF724: Protein of un 39.0 4.1E+02 0.0088 26.5 11.8 26 257-282 155-180 (190)
363 PRK09973 putative outer membra 38.8 1.2E+02 0.0027 26.6 6.6 49 227-275 25-73 (85)
364 TIGR02473 flagell_FliJ flagell 38.6 3E+02 0.0066 24.9 13.3 74 466-543 25-108 (141)
365 PRK11546 zraP zinc resistance 37.7 3.6E+02 0.0077 25.9 10.1 73 210-292 45-117 (143)
366 PRK15396 murein lipoprotein; P 37.7 1.1E+02 0.0025 26.3 6.1 50 228-277 27-76 (78)
367 PF04871 Uso1_p115_C: Uso1 / p 37.6 3.6E+02 0.0077 25.4 13.0 23 518-540 92-114 (136)
368 PLN02939 transferase, transfer 37.4 9.2E+02 0.02 30.2 26.1 25 257-281 159-183 (977)
369 PRK03598 putative efflux pump 36.9 5.2E+02 0.011 27.1 13.7 28 467-494 144-171 (331)
370 PF14817 HAUS5: HAUS augmin-li 36.6 7.9E+02 0.017 29.1 20.8 40 331-370 301-340 (632)
371 PF10234 Cluap1: Clusterin-ass 36.5 3.9E+02 0.0085 28.2 11.1 52 238-289 167-218 (267)
372 PF10205 KLRAQ: Predicted coil 36.3 3.3E+02 0.0072 24.7 9.3 50 232-281 25-74 (102)
373 PRK10132 hypothetical protein; 36.3 3.3E+02 0.0073 24.8 9.3 75 472-552 9-88 (108)
374 KOG4196|consensus 36.0 48 0.0011 31.2 3.9 32 510-541 88-119 (135)
375 PF15186 TEX13: Testis-express 35.8 4.2E+02 0.009 25.7 10.9 65 424-494 84-150 (152)
376 PF00170 bZIP_1: bZIP transcri 35.3 1.2E+02 0.0025 24.5 5.7 27 505-531 28-54 (64)
377 PRK02119 hypothetical protein; 35.2 2.8E+02 0.006 23.4 8.2 48 251-298 6-53 (73)
378 PF05529 Bap31: B-cell recepto 35.2 1.2E+02 0.0027 29.6 7.0 40 239-278 153-192 (192)
379 TIGR02449 conserved hypothetic 35.2 2.4E+02 0.0053 23.5 7.5 30 257-286 24-53 (65)
380 PF10393 Matrilin_ccoil: Trime 35.2 1.1E+02 0.0023 24.0 5.1 32 41-75 13-46 (47)
381 KOG4005|consensus 35.1 1.7E+02 0.0036 30.5 7.9 79 264-370 55-133 (292)
382 KOG0239|consensus 34.8 8.6E+02 0.019 29.0 15.4 65 217-281 232-296 (670)
383 PRK11546 zraP zinc resistance 34.7 1.8E+02 0.0039 27.9 7.6 47 236-282 50-103 (143)
384 KOG2264|consensus 34.5 3.1E+02 0.0066 32.1 10.4 34 385-423 45-78 (907)
385 cd07657 F-BAR_Fes_Fer The F-BA 34.5 5.3E+02 0.011 26.5 16.9 175 173-426 63-237 (237)
386 PF05546 She9_MDM33: She9 / Md 34.4 5.2E+02 0.011 26.4 13.4 84 212-295 32-133 (207)
387 PF07464 ApoLp-III: Apolipopho 34.4 2.6E+02 0.0055 27.1 8.7 84 148-249 14-97 (155)
388 PF05791 Bacillus_HBL: Bacillu 34.3 3.8E+02 0.0083 26.3 10.2 34 227-260 111-144 (184)
389 COG0216 PrfA Protein chain rel 34.1 6.7E+02 0.015 27.6 12.7 99 180-295 5-103 (363)
390 PF13815 Dzip-like_N: Iguana/D 34.1 1.3E+02 0.0028 27.5 6.4 37 511-547 81-117 (118)
391 PF04048 Sec8_exocyst: Sec8 ex 34.1 4E+02 0.0087 25.0 11.4 93 344-475 39-131 (142)
392 PRK10476 multidrug resistance 34.0 6E+02 0.013 27.0 14.3 31 258-288 111-141 (346)
393 PF02841 GBP_C: Guanylate-bind 33.8 5.8E+02 0.013 26.8 15.6 40 147-186 14-54 (297)
394 PF03245 Phage_lysis: Bacterio 33.7 3.5E+02 0.0076 25.0 9.3 36 515-550 26-61 (125)
395 KOG4572|consensus 33.4 1E+03 0.022 29.4 27.3 60 466-530 1007-1072(1424)
396 PF06657 Cep57_MT_bd: Centroso 33.2 1.8E+02 0.0039 24.9 6.7 50 470-522 19-73 (79)
397 KOG4403|consensus 32.3 7.9E+02 0.017 27.9 15.5 60 225-284 258-325 (575)
398 PF14257 DUF4349: Domain of un 32.1 2.2E+02 0.0048 29.1 8.5 21 469-489 163-183 (262)
399 PF11172 DUF2959: Protein of u 32.1 5.6E+02 0.012 26.0 21.0 109 411-531 64-184 (201)
400 PF01920 Prefoldin_2: Prefoldi 32.0 3.3E+02 0.0071 23.4 9.3 40 508-547 60-99 (106)
401 PF05791 Bacillus_HBL: Bacillu 32.0 5E+02 0.011 25.5 14.0 66 466-534 115-180 (184)
402 PRK04325 hypothetical protein; 31.8 3.2E+02 0.0069 23.1 8.3 47 254-300 9-55 (74)
403 PF10805 DUF2730: Protein of u 31.5 3.2E+02 0.0068 24.6 8.4 52 231-282 40-93 (106)
404 KOG3647|consensus 31.4 1.4E+02 0.0031 31.5 6.8 53 237-289 109-161 (338)
405 PF00170 bZIP_1: bZIP transcri 31.3 1.8E+02 0.0038 23.4 6.1 23 467-489 25-47 (64)
406 KOG1899|consensus 31.2 9.7E+02 0.021 28.6 22.3 51 232-282 110-160 (861)
407 PRK00736 hypothetical protein; 31.1 3.1E+02 0.0067 22.8 7.6 46 255-300 6-51 (68)
408 PF14523 Syntaxin_2: Syntaxin- 31.1 3.4E+02 0.0074 23.3 13.3 61 231-291 31-94 (102)
409 PF05008 V-SNARE: Vesicle tran 31.1 2.1E+02 0.0045 23.7 6.7 22 469-490 26-47 (79)
410 PF06632 XRCC4: DNA double-str 30.9 5.7E+02 0.012 27.9 11.6 32 503-534 180-211 (342)
411 KOG4196|consensus 30.5 4.8E+02 0.01 24.8 10.2 52 441-496 65-116 (135)
412 COG0419 SbcC ATPase involved i 30.5 1.1E+03 0.023 28.9 49.1 46 50-95 169-215 (908)
413 KOG4603|consensus 30.2 2.4E+02 0.0051 28.1 7.7 45 238-282 84-130 (201)
414 PF02181 FH2: Formin Homology 30.2 3.1E+02 0.0067 29.4 9.6 69 469-537 275-343 (370)
415 PF06156 DUF972: Protein of un 30.1 2.6E+02 0.0057 25.4 7.6 23 244-266 19-41 (107)
416 TIGR02231 conserved hypothetic 30.0 5.7E+02 0.012 29.0 12.1 29 409-437 69-97 (525)
417 KOG0249|consensus 29.8 1.1E+03 0.023 28.6 22.5 30 257-289 159-188 (916)
418 PF11802 CENP-K: Centromere-as 29.6 7E+02 0.015 26.4 18.0 54 466-526 94-147 (268)
419 KOG0240|consensus 29.6 9.8E+02 0.021 28.1 17.6 42 411-452 463-504 (607)
420 PF04136 Sec34: Sec34-like fam 29.5 4E+02 0.0087 25.6 9.2 61 220-280 15-75 (157)
421 PF05082 Rop-like: Rop-like; 29.5 3.4E+02 0.0074 22.8 8.0 58 222-286 5-62 (66)
422 TIGR03689 pup_AAA proteasome A 29.5 77 0.0017 36.3 5.0 47 515-561 6-54 (512)
423 TIGR00998 8a0101 efflux pump m 29.1 6.7E+02 0.015 26.1 13.8 30 257-286 104-133 (334)
424 PRK05431 seryl-tRNA synthetase 29.1 2.6E+02 0.0056 31.2 8.9 60 223-282 32-94 (425)
425 cd00584 Prefoldin_alpha Prefol 29.0 2.5E+02 0.0055 25.4 7.5 24 334-357 83-106 (129)
426 KOG4603|consensus 29.0 3E+02 0.0066 27.3 8.2 55 223-282 83-137 (201)
427 PF04859 DUF641: Plant protein 28.8 5.1E+02 0.011 24.5 13.0 67 216-282 42-115 (131)
428 PF02841 GBP_C: Guanylate-bind 28.7 7E+02 0.015 26.1 13.6 19 511-529 278-296 (297)
429 PF15188 CCDC-167: Coiled-coil 28.6 2.8E+02 0.0061 24.4 7.2 30 330-359 39-68 (85)
430 PF03961 DUF342: Protein of un 28.3 3.8E+02 0.0081 29.9 10.1 80 413-494 329-408 (451)
431 PF06810 Phage_GP20: Phage min 28.3 4.8E+02 0.01 25.1 9.5 37 410-446 12-48 (155)
432 PLN02678 seryl-tRNA synthetase 28.1 4.2E+02 0.0091 29.9 10.4 92 466-570 38-133 (448)
433 PF04576 Zein-binding: Zein-bi 27.9 4.1E+02 0.0088 23.8 8.1 61 472-535 3-63 (94)
434 PF15290 Syntaphilin: Golgi-lo 27.9 5.9E+02 0.013 27.2 10.5 65 415-482 72-138 (305)
435 PF07989 Microtub_assoc: Micro 27.8 3.8E+02 0.0083 22.8 8.4 63 227-289 8-71 (75)
436 COG3879 Uncharacterized protei 27.7 3.5E+02 0.0077 28.2 8.9 22 223-244 54-75 (247)
437 COG1842 PspA Phage shock prote 27.6 6.8E+02 0.015 25.6 16.1 23 474-496 58-80 (225)
438 PF04871 Uso1_p115_C: Uso1 / p 27.6 5.2E+02 0.011 24.3 11.2 72 220-291 35-107 (136)
439 PF15035 Rootletin: Ciliary ro 27.5 6.1E+02 0.013 25.1 18.3 34 337-370 77-110 (182)
440 KOG0982|consensus 27.5 9.5E+02 0.021 27.3 20.8 43 328-370 305-347 (502)
441 KOG1962|consensus 27.4 6.9E+02 0.015 25.6 12.5 35 515-549 177-211 (216)
442 KOG2751|consensus 27.4 9.5E+02 0.02 27.2 13.3 39 330-368 179-217 (447)
443 KOG3564|consensus 27.3 2.1E+02 0.0045 32.7 7.6 54 225-278 27-80 (604)
444 PF07200 Mod_r: Modifier of ru 27.3 5.1E+02 0.011 24.1 14.9 118 405-545 21-145 (150)
445 PF03980 Nnf1: Nnf1 ; InterPr 27.2 3.3E+02 0.0072 24.1 7.8 43 401-443 63-105 (109)
446 PRK10698 phage shock protein P 27.2 6.7E+02 0.015 25.4 21.3 42 329-370 33-74 (222)
447 PF10458 Val_tRNA-synt_C: Valy 27.2 3.3E+02 0.0072 22.2 7.1 65 223-287 1-65 (66)
448 PF06632 XRCC4: DNA double-str 27.2 5.1E+02 0.011 28.3 10.5 23 259-281 156-178 (342)
449 PF14931 IFT20: Intraflagellar 27.0 5.1E+02 0.011 24.0 10.1 75 410-489 29-108 (120)
450 PF07798 DUF1640: Protein of u 27.0 5.9E+02 0.013 24.7 17.9 30 467-496 72-101 (177)
451 PF12240 Angiomotin_C: Angiomo 26.9 6.9E+02 0.015 25.5 10.9 31 504-534 58-88 (205)
452 PF12795 MscS_porin: Mechanose 26.9 6.8E+02 0.015 25.3 22.6 80 467-546 149-229 (240)
453 PRK14127 cell division protein 26.6 2.1E+02 0.0045 26.2 6.3 35 512-546 39-73 (109)
454 KOG2629|consensus 26.6 5.2E+02 0.011 27.7 10.0 43 410-452 121-163 (300)
455 KOG0288|consensus 26.4 3.1E+02 0.0068 30.7 8.6 77 458-534 2-79 (459)
456 TIGR00414 serS seryl-tRNA synt 26.4 4.5E+02 0.0097 29.3 10.2 60 466-529 35-95 (418)
457 PRK13169 DNA replication intia 26.2 3.2E+02 0.0069 25.1 7.4 12 225-236 7-18 (110)
458 smart00340 HALZ homeobox assoc 26.2 1.5E+02 0.0032 22.9 4.3 27 214-240 7-33 (44)
459 PRK00295 hypothetical protein; 26.1 3.8E+02 0.0083 22.2 8.0 43 256-298 7-49 (68)
460 PF13623 SurA_N_2: SurA N-term 26.1 1.5E+02 0.0032 28.3 5.5 29 73-101 70-98 (145)
461 TIGR02977 phageshock_pspA phag 26.1 6.8E+02 0.015 25.1 21.3 167 329-548 33-218 (219)
462 PF15066 CAGE1: Cancer-associa 25.9 1E+03 0.023 27.2 24.0 55 227-281 311-365 (527)
463 PF14389 Lzipper-MIP1: Leucine 25.8 4.5E+02 0.0097 22.9 8.7 70 463-536 10-80 (88)
464 COG3206 GumC Uncharacterized p 25.8 9.4E+02 0.02 26.7 18.6 184 330-543 184-368 (458)
465 PF05384 DegS: Sensor protein 25.8 6.3E+02 0.014 24.6 16.6 61 422-493 81-144 (159)
466 PF10779 XhlA: Haemolysin XhlA 25.7 3.2E+02 0.0069 22.6 6.9 47 231-277 4-50 (71)
467 TIGR00618 sbcc exonuclease Sbc 25.7 1.4E+03 0.03 28.5 33.5 83 466-549 727-810 (1042)
468 KOG0244|consensus 25.6 1.4E+03 0.029 28.4 22.0 267 217-529 354-630 (913)
469 KOG4302|consensus 25.5 1.2E+03 0.026 27.8 26.4 40 324-363 157-196 (660)
470 KOG3156|consensus 25.4 7.5E+02 0.016 25.4 11.7 81 431-535 61-141 (220)
471 PF05837 CENP-H: Centromere pr 25.2 5E+02 0.011 23.3 11.0 69 218-287 9-77 (106)
472 KOG4343|consensus 25.1 4.2E+02 0.0092 30.7 9.5 78 13-94 249-333 (655)
473 PF13747 DUF4164: Domain of un 25.1 4.7E+02 0.01 22.9 10.9 49 250-298 35-83 (89)
474 PF06248 Zw10: Centromere/kine 25.0 1.1E+03 0.024 27.2 19.4 28 399-426 138-165 (593)
475 TIGR02971 heterocyst_DevB ABC 25.0 8E+02 0.017 25.6 17.9 31 422-452 94-124 (327)
476 PF15188 CCDC-167: Coiled-coil 25.0 1.7E+02 0.0037 25.7 5.2 26 468-493 5-30 (85)
477 PF04201 TPD52: Tumour protein 24.9 1.8E+02 0.004 28.4 5.9 56 334-389 29-91 (162)
478 PF14389 Lzipper-MIP1: Leucine 24.8 4.7E+02 0.01 22.8 8.6 58 220-277 9-84 (88)
479 PLN02678 seryl-tRNA synthetase 24.6 4.1E+02 0.0088 30.1 9.5 59 224-282 38-99 (448)
480 PF07200 Mod_r: Modifier of ru 24.6 5.4E+02 0.012 23.9 9.1 19 408-426 66-84 (150)
481 PF03962 Mnd1: Mnd1 family; I 24.5 7E+02 0.015 24.7 12.7 16 477-492 112-127 (188)
482 PF03915 AIP3: Actin interacti 24.5 1E+03 0.023 26.7 14.1 108 351-488 209-319 (424)
483 PF06156 DUF972: Protein of un 24.5 3.7E+02 0.0079 24.4 7.5 11 260-270 21-31 (107)
484 PF11705 RNA_pol_3_Rpc31: DNA- 24.3 1.7E+02 0.0037 29.7 6.0 10 1-10 1-10 (233)
485 TIGR03495 phage_LysB phage lys 24.2 6.3E+02 0.014 24.0 9.7 65 224-288 24-88 (135)
486 PF10392 COG5: Golgi transport 24.1 5.7E+02 0.012 23.6 11.9 71 207-284 25-95 (132)
487 PF04880 NUDE_C: NUDE protein, 24.1 1.1E+02 0.0023 30.1 4.2 29 517-546 24-52 (166)
488 PLN02320 seryl-tRNA synthetase 24.0 7.2E+02 0.016 28.6 11.3 53 472-529 104-156 (502)
489 PF14282 FlxA: FlxA-like prote 24.0 5.3E+02 0.011 23.1 9.2 58 475-535 19-76 (106)
490 PF14712 Snapin_Pallidin: Snap 23.9 4.6E+02 0.0099 22.3 10.6 29 259-287 62-90 (92)
491 PF04859 DUF641: Plant protein 23.9 4.5E+02 0.0097 24.9 8.1 42 503-544 80-128 (131)
492 cd00584 Prefoldin_alpha Prefol 23.9 2E+02 0.0042 26.2 5.8 37 505-545 8-44 (129)
493 TIGR00414 serS seryl-tRNA synt 23.8 3.8E+02 0.0083 29.8 9.0 60 223-282 34-97 (418)
494 PF04880 NUDE_C: NUDE protein, 23.7 1E+02 0.0022 30.3 4.0 42 329-370 2-46 (166)
495 PF03999 MAP65_ASE1: Microtubu 23.6 2.1E+02 0.0046 33.3 7.3 335 178-547 29-404 (619)
496 PF15066 CAGE1: Cancer-associa 23.4 1.2E+03 0.025 26.9 20.0 199 157-383 313-523 (527)
497 COG3074 Uncharacterized protei 23.1 4.8E+02 0.01 22.3 9.4 72 161-241 4-75 (79)
498 PF10828 DUF2570: Protein of u 22.9 4.2E+02 0.009 23.8 7.6 62 475-536 25-86 (110)
499 KOG4421|consensus 22.8 1.1E+03 0.024 26.3 13.9 141 229-369 18-173 (637)
500 COG1322 Predicted nuclease of 22.7 1.2E+03 0.025 26.6 16.5 120 415-534 56-188 (448)
No 1
>KOG0978|consensus
Probab=100.00 E-value=6.4e-32 Score=300.73 Aligned_cols=302 Identities=39% Similarity=0.582 Sum_probs=275.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8072 162 LDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAK 241 (584)
Q Consensus 162 ~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~k 241 (584)
++..++.|+.+++++++.++..+|.+....+.++..+.+ +.++++..++.|..++.+||.+++.||.+
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~------------~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~ 70 (698)
T KOG0978|consen 3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNR------------VEEALTVLFDELAEENEKLQNLADHLQEK 70 (698)
T ss_pred chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999988887766 67889999999999999999999999999
Q ss_pred HHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCC
Q psy8072 242 YHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETM 321 (584)
Q Consensus 242 hk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~~~~~~~~~p~~g~ 321 (584)
|+.++.++.++.|+++..++++.++..++|+++|+++++++|.++|+.|++++++.+++ ++++++..+|.
T Consensus 71 ~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t----------~~~~~~~~~~~ 140 (698)
T KOG0978|consen 71 HATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT----------YGNGNGSLSGT 140 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----------CCCcccccCcc
Confidence 99999999999999999999999999999999999999999999999999999953332 11122223466
Q ss_pred ccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhcc
Q psy8072 322 SNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQ 401 (584)
Q Consensus 322 ~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 401 (584)
++++..+++++.+.++|++.+|+.|+.+|++++..+..+..++++++++ ++.
T Consensus 141 ~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~----------------------------l~~ 192 (698)
T KOG0978|consen 141 ITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVE----------------------------LRS 192 (698)
T ss_pred cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH
Confidence 7788889999999999999999999999999999999999999999999 899
Q ss_pred CChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 402 LPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIR 481 (584)
Q Consensus 402 l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR 481 (584)
++..++..|.+|+|++ ||+..++++ |+.+|+...+. ++++++.++.|+
T Consensus 193 ~~~~~~~~~~e~~~~~------~NE~l~~~~----------------------~~~~e~~~~~~----~~~lee~~~~~~ 240 (698)
T KOG0978|consen 193 LKEKVRSETFELRCLQ------YNEELQRKT----------------------MESDEAINSKK----VIKLEEKLAQCV 240 (698)
T ss_pred hhHHHHHHHHHHHHHH------hhhhccccc----------------------chhhhhhccch----HHHHHHHHHHHH
Confidence 9999999999999999 777776655 67888876664 899999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 482 KEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 482 ~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
++|+++++++++++++|++.++|++||++|++++++++++|++ |.++|+++++++.+||++..|
T Consensus 241 ~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~----~~~~~k~t~~~~~~lr~~~~s 304 (698)
T KOG0978|consen 241 KEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKE----YERELKDTESDNLKLRKQHSS 304 (698)
T ss_pred HHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999999889999999999999999999999 666779999999999999988
No 2
>KOG0161|consensus
Probab=98.38 E-value=0.023 Score=71.99 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 514 SLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 514 Slq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
++...+.+++.++..++.++-+.+...+.|
T Consensus 1319 ~l~~~l~~l~~e~~~l~e~leee~e~~~~l 1348 (1930)
T KOG0161|consen 1319 ALENALRQLEHELDLLREQLEEEQEAKNEL 1348 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666655555433
No 3
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.33 E-value=0.0026 Score=71.49 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8072 422 VLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQ 500 (584)
Q Consensus 422 ~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq 500 (584)
.+..+...++.+|+..+..+++.+....---+ |..++.. +...-+++.+...+.++|+....+...++.+..+.-+
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~--EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~- 356 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRK--ELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWA- 356 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33344444577777777777766532111111 1122222 2223333333333444444444444444433332211
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 501 TGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 501 ~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
....-+++-+.+...+|..|+.++.+....++|-..|-.+|..+.+.
T Consensus 357 --qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 357 --QEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred --HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234455567778889999999999988888888888888887654
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.25 E-value=0.019 Score=69.18 Aligned_cols=19 Identities=5% Similarity=0.069 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8072 511 LITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 511 LisSlq~~i~~LksEv~R~ 529 (584)
-+..++.++..++..+..|
T Consensus 469 ~~~~~~~~~~~l~~~~~~l 487 (1179)
T TIGR02168 469 ELEEAEQALDAAERELAQL 487 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.13 E-value=0.0059 Score=73.50 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8072 507 EMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQ 541 (584)
Q Consensus 507 Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~ 541 (584)
+++.-+..+...+..++.++.+++.++......+.
T Consensus 905 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555444444444433
No 6
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.02 E-value=0.031 Score=64.40 Aligned_cols=281 Identities=17% Similarity=0.266 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhh
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLC 301 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~ 301 (584)
-.|..++..|+..+..|..++.........+-......+.++.+|+..+++...+.....+ -|+. +
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~k---LLe~-----l------ 148 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQK---LLEQ-----L------ 148 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhh-----h------
Confidence 4567777888888888888777776666666555566677777777777776655543333 1111 2
Q ss_pred hccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy8072 302 QQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKE---LANNRL----QELDKLHLQHREALKDVEKLKMDWEVT 374 (584)
Q Consensus 302 ~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~---LA~~Rl----~ELe~L~~e~~~l~~e~~~Lk~~~~~~ 374 (584)
..+- .+++.....-.+|+..+.|++. -..+-. .-|+--+.-+..|.+.+..|+.+
T Consensus 149 ---qsdk-----------~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~---- 210 (617)
T PF15070_consen 149 ---QSDK-----------ATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEK---- 210 (617)
T ss_pred ---cccc-----------hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1110 0011111112566666666654 222333 22333333445666777777766
Q ss_pred cccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHH
Q psy8072 375 FNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSH---LSASKNNQQRQ 451 (584)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~---Lq~~R~~~~~q 451 (584)
+..+-+.+=..+.++..|+.|...++. +|..|.+. +..++...-++
T Consensus 211 ------------------------l~~~~e~le~K~qE~~~Lq~q~dq~~~-------~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 211 ------------------------LHNLKEKLELKSQEAQSLQEQRDQYLG-------HLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred ------------------------HHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445667777776666533 33333221 22222222221
Q ss_pred ----HHHH---hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-------------------
Q psy8072 452 ----IEMM---ETEELMVQ---KKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTG------------------- 502 (584)
Q Consensus 452 ----ie~m---E~~E~~~q---~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g------------------- 502 (584)
...| -..|.... .....++.+....|..+..+-+.|.+.+.......+..|
T Consensus 260 ~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipE 339 (617)
T PF15070_consen 260 LLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPE 339 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCccccc
Confidence 1111 11222211 114456667777788888888888887765333222111
Q ss_pred --chHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCcccccCCCCCcccccch
Q psy8072 503 --PINREMRHL----ITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYRLHAGGSGFDSRWGRS 571 (584)
Q Consensus 503 --~i~~Emr~L----isSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~~~~~~~~~~~~~~~~~ 571 (584)
++...|..+ +.+.+.+-..|..++..-|..+......+..++.......|.+ |+|.||..|-+
T Consensus 340 d~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~------~~~~dsV~~E~ 408 (617)
T PF15070_consen 340 DLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAP------GTGGDSVPGET 408 (617)
T ss_pred ccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCc------ccCCCCCCccc
Confidence 245555444 3445555555566665555555666666666655544422221 55556655543
No 7
>PRK11637 AmiB activator; Provisional
Probab=97.89 E-value=0.037 Score=60.84 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8072 261 TEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 261 se~~eL~~qLee~~~eL~k~~ 281 (584)
.++..++.+++.++.++...+
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 8
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.89 E-value=0.11 Score=61.40 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLK-------ISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e-------~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
|..+..++..||..+ ..|..-..+-.+ +..++. +...+..+.+|..+.|.++.+++..+..+.+++
T Consensus 69 ~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q 141 (775)
T PF10174_consen 69 NQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQ 141 (775)
T ss_pred HHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555 444333333333 333333 444555555555555555555555555554443
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.88 E-value=0.16 Score=62.75 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 236 TKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 236 ~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
..+..++..+..++..+...+...+.++..+..+++++..++...+.++..+.
T Consensus 228 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~ 280 (1163)
T COG1196 228 ALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELR 280 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555443333
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=97.84 E-value=0.14 Score=60.95 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVL 423 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l 423 (584)
..|..|+.++..+
T Consensus 537 ~~~~~l~~e~~~l 549 (880)
T PRK02224 537 ERAEELRERAAEL 549 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.83 E-value=0.1 Score=59.05 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 431 KTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 431 k~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
..+|.+.+..+..+|+++..-+ +.. .-...+|..++..++.-+..=|.++..|..++....-.
T Consensus 345 ~l~lke~~~q~~qEk~~l~~~~---e~~-k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~ 407 (546)
T PF07888_consen 345 SLELKEGRSQWAQEKQALQHSA---EAD-KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDC 407 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5666666777777777555322 221 11233488899999999999999999999999765544
No 12
>KOG0161|consensus
Probab=97.82 E-value=0.25 Score=63.14 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=37.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 217 VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
+.+.-+++.....+++.....+..+.+.+..++..+.+..+++..+.+.++..+.+++.+|...+.++
T Consensus 941 l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~ 1008 (1930)
T KOG0161|consen 941 LKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKA 1008 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555555555555566666666666666666666655555555533
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.82 E-value=0.2 Score=62.05 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 464 KKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 464 ~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ke 535 (584)
...+.++.+++..+.++..+.+.+..++...... ..-..+..+..+.+.+...+.+++.++...+.++++
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e--~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~ 750 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELLEELKEQLKE--LRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKE 750 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366777777888888888888777777766663 233666777777777777777777777666544444
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.80 E-value=0.19 Score=62.11 Aligned_cols=64 Identities=23% Similarity=0.427 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
..+...+...+..+...+..+..++......+...+.++.++..+++.++.++........+++
T Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le 301 (1163)
T COG1196 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555566555555555555555555555555555544444333444
No 15
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.76 E-value=0.1 Score=57.20 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=76.2
Q ss_pred hccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 399 IRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALS 478 (584)
Q Consensus 399 L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~La 478 (584)
+.-.|++. ....-+.-+|.++.++..+.-..|......|...|. .| +.|-..+..+.++...-...|+
T Consensus 135 ll~~~eda----~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~----~i----aaeq~~l~~~~~eq~~q~~kl~ 202 (420)
T COG4942 135 LLVSPEDA----QRSVRLAIYYGALNPARAERIDALKATLKQLAAVRA----EI----AAEQAELTTLLSEQRAQQAKLA 202 (420)
T ss_pred hhcChhhh----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33336654 344455566666654444444444444444443332 11 2233233345666667777888
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 479 QIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYK 530 (584)
Q Consensus 479 rvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K 530 (584)
+++.|+..+..+++..+++ -.....|++.-.++|.+.|..++.+..+-+
T Consensus 203 ~~~~E~kk~~~~l~~~l~~---~q~~l~eL~~~~~~L~~~Ias~e~~aA~~r 251 (420)
T COG4942 203 QLLEERKKTLAQLNSELSA---DQKKLEELRANESRLKNEIASAEAAAAKAR 251 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 446788999999999999999998888553
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=0.32 Score=60.90 Aligned_cols=150 Identities=12% Similarity=0.080 Sum_probs=71.9
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhh
Q psy8072 328 KLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVI 407 (584)
Q Consensus 328 k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I 407 (584)
++..+..++++.+.-...... +++.+...+...+..|..- +.+|+.|+-.-.|-.|.. +...+..+
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~i~~y~~~~~~~qL~~-~e~el~~~----- 982 (1311)
T TIGR00606 917 FLEKDQQEKEELISSKETSNK---KAQDKVNDIKEKVKNIHGY-----MKDIENKIQDGKDDYLKQ-KETELNTV----- 982 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCHHHHHH-HHHHHHHH-----
Confidence 456666666666655555544 4444444444444444432 344777776666655532 22222211
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy8072 408 VETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQ--IEMMETEELMV-QKKLRGEMMQLEDALSQIRKEY 484 (584)
Q Consensus 408 ~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~q--ie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~er 484 (584)
......+++....+-.++..++.+++.....-...++++... ...+ .+... ...++.++..+ +...+..++
T Consensus 983 --~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l--~el~~eI~~l~~~~~~~--~~~~~~~e~ 1056 (1311)
T TIGR00606 983 --NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENEL--KEVEEELKQHLKEMGQM--QVLQMKQEH 1056 (1311)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhc--cHHHHHHHH
Confidence 233455566666665555555555555544433333333222 1111 11111 11133333332 335667777
Q ss_pred HHHHHHHHHHhhh
Q psy8072 485 EMLRIEFETNLAA 497 (584)
Q Consensus 485 e~L~~E~eq~~aa 497 (584)
+.|..++....+.
T Consensus 1057 ~~l~~~~~~l~~~ 1069 (1311)
T TIGR00606 1057 QKLEENIDLIKRN 1069 (1311)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665553
No 17
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.69 E-value=0.098 Score=54.68 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKET 536 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea 536 (584)
++..+..+..++..++.....|...+.+.... -+.-...+...|..+..++..|+.++.+.-+.|.+.
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~---~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLRELEQR---LDEEREEYQAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHHHHHHH---HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666655554442 225556677778888888888888887776666654
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.58 E-value=0.45 Score=59.57 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHhhhhhc
Q psy8072 505 NREMRHLITSLQNHNKQIKGEVNRY--KRKYKETSAEIQKVRISER 548 (584)
Q Consensus 505 ~~Emr~LisSlq~~i~~LksEv~R~--K~k~kea~~e~~~lr~~~~ 548 (584)
+..++.-++.++.+-..++.++... ++.+++...+|..|..+.+
T Consensus 1000 i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606 1000 MRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555555555555555555 5666666666666665544
No 19
>KOG0976|consensus
Probab=97.54 E-value=0.2 Score=58.27 Aligned_cols=143 Identities=20% Similarity=0.260 Sum_probs=87.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHH
Q psy8072 217 VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATE 296 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale 296 (584)
++.-...+......++.++..||.++-.+..+.+.+|+.++.++..+++-+.+||.+..++.+.+. -|..|--+...
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~---eLsAk~~eIf~ 166 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED---ELSAKAHDIFM 166 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHhhhhHHHHH
Confidence 344445566667788899999999999999999999999999999999999999999888887776 44433222221
Q ss_pred HhhhhhccccCCCCCCCCCCCC-----C-CCccccc--hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 297 KVKLCQQMHTEDGKEKDVIKPE-----E-TMSNVSQ--KKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLK 368 (584)
Q Consensus 297 ~~~s~~~~~~~~~~~~~~~~p~-----~-g~~~~~~--~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk 368 (584)
. ++.-..+.+-... + .....+. ..++.+-..++|.-..-..+-.++.+-+.-.+++++++-.|-
T Consensus 167 ~--------~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLs 238 (1265)
T KOG0976|consen 167 I--------GEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLS 238 (1265)
T ss_pred H--------HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1110000000000 0 0000000 113445555666666666667777777777777777766665
Q ss_pred hh
Q psy8072 369 MD 370 (584)
Q Consensus 369 ~~ 370 (584)
..
T Consensus 239 s~ 240 (1265)
T KOG0976|consen 239 SQ 240 (1265)
T ss_pred Hh
Confidence 44
No 20
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.51 E-value=0.093 Score=51.88 Aligned_cols=176 Identities=24% Similarity=0.307 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCCCCC
Q psy8072 232 TEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKE 311 (584)
Q Consensus 232 q~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~~~~ 311 (584)
-..+.+|+.-++.+..+...++..+...+.-...|..+++++.-.+--..+ + .+.+.+++
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq----a-l~~aK~l~--------------- 66 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ----A-LQKAKALE--------------- 66 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHH---------------
Confidence 344445555555555555566666666666666666666666555544432 1 11111120
Q ss_pred CCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCc
Q psy8072 312 KDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSL 391 (584)
Q Consensus 312 ~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~ 391 (584)
..+++|+.....+.+-..+=+.+...+..+++.|..+++.|+.+
T Consensus 67 ---------------eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee--------------------- 110 (193)
T PF14662_consen 67 ---------------EELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEE--------------------- 110 (193)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 13566776666666667777777888888888888888888888
Q ss_pred ccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHh--HHHHHH-
Q psy8072 392 TTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSH------LSASKNNQQRQIEMME--TEELMV- 462 (584)
Q Consensus 392 ~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~------Lq~~R~~~~~qie~mE--~~E~~~- 462 (584)
+..+. ....-|+++...|+.+...|+.++-++..+ +-.+|+ ++++... -+|-..
T Consensus 111 ----n~kl~----------~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t---~~i~eL~~~ieEy~~~ 173 (193)
T PF14662_consen 111 ----NGKLL----------AERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERT---QQIEELKKTIEEYRSI 173 (193)
T ss_pred ----HhHHH----------HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 11122 455677888888888888888888666655 223343 3333322 123222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8072 463 QKKLRGEMMQLEDALSQI 480 (584)
Q Consensus 463 q~~l~s~v~qlE~~Larv 480 (584)
..++|.++..||..|.+.
T Consensus 174 teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 174 TEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344777777777777653
No 21
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.48 E-value=0.31 Score=55.22 Aligned_cols=173 Identities=20% Similarity=0.271 Sum_probs=79.6
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhh
Q psy8072 327 KKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESV 406 (584)
Q Consensus 327 ~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~ 406 (584)
.+.++|..++..+++....-...-....++...+..+.+.....|+-.|.. ....+..|..++
T Consensus 172 ~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~lee-----------------ae~~l~~L~~e~ 234 (522)
T PF05701_consen 172 EKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEE-----------------AEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Confidence 456777777777776555432222333333333333333333332222211 111133333333
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 407 IVETTEYKCLQSAYSVLYNENQLAKTQAQEFQS-HLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYE 485 (584)
Q Consensus 407 I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~-~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere 485 (584)
...+.|++++......+..|+.+|..+.. .+...- ..+.....+...+..++.+-+
T Consensus 235 ----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~-------------------~~~~~~~~~~~~l~s~~~ELe 291 (522)
T PF05701_consen 235 ----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEA-------------------EAKEKSSELQSSLASAKKELE 291 (522)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------------------HhhhhhhhHHHHHHHHHHHHH
Confidence 44556666666665555555666655544 111110 112222233333444444444
Q ss_pred HHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 486 MLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 486 ~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
.....++..... ..-|+..+.+|..++...+.++.++|.+...+.+.+..|..+
T Consensus 292 ~ak~~L~~~k~E-------~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~e 345 (522)
T PF05701_consen 292 EAKKELEKAKEE-------ASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAE 345 (522)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Confidence 444444444332 444555555555555555555555555555555555554443
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.44 E-value=0.099 Score=53.20 Aligned_cols=141 Identities=18% Similarity=0.293 Sum_probs=74.4
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhh
Q psy8072 328 KLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVI 407 (584)
Q Consensus 328 k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I 407 (584)
++..|+..+.+++..+..--.-++.....+..+..+++...-.. .. +...+..+-++.-
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~----e~-----------------~E~ki~eLE~el~ 151 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA----EA-----------------AESKIKELEEELK 151 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH----HH-----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh-----------------hchhHHHHHHHHH
Confidence 56777777777777777666666666666555555555544330 00 0001221112221
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 408 VETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEML 487 (584)
Q Consensus 408 ~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L 487 (584)
.-+.-.++|.......+.+...+..++......|... +.-.+.+|.. -..|..+|..++++|...+..|..+
T Consensus 152 ~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea-------E~Rae~aE~~-v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 152 SVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA-------ENRAEFAERR-VKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333444444444333333333332222221111 1111333332 3338999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy8072 488 RIEFETNLAA 497 (584)
Q Consensus 488 ~~E~eq~~aa 497 (584)
..++.+.+..
T Consensus 224 ~~eld~~l~e 233 (237)
T PF00261_consen 224 QEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 23
>KOG0977|consensus
Probab=97.42 E-value=0.21 Score=56.48 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC----chHHHHH----HHHHH---HHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTG----PINREMR----HLITS---LQNHNKQIKGEVNRYK 530 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g----~i~~Emr----~LisS---lq~~i~~LksEv~R~K 530 (584)
|+++++++|...+-+-+.-++|+..+.+....-|++- ..+++|| .|..- |-+-..+|..|+..||
T Consensus 308 Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YR 383 (546)
T KOG0977|consen 308 LRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYR 383 (546)
T ss_pred hhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHH
Confidence 8888888888888888888888887665554433332 3333333 33332 2233456777777773
No 24
>PRK11637 AmiB activator; Provisional
Probab=97.41 E-value=0.17 Score=55.75 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLL 292 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la 292 (584)
-..+..++..++..+..++.+...+..++..+..++...+.++..++.+|+.+..++...+..+..++..+.
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555555555555555555555544444433
No 25
>KOG4643|consensus
Probab=97.40 E-value=0.54 Score=56.13 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=31.5
Q ss_pred CCCchhhcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q psy8072 32 ISTLEEMDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQ 75 (584)
Q Consensus 32 vss~ee~D~~vLqfQn~kL~Q~LE~qr~~~~~LE~rieeLe~rQ 75 (584)
.+.+=.+..+.+.-.+..|+|.+|.+-.....|+..|+.|+.+.
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~ 214 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEI 214 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567788899999999999999666666666666666543
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=97.40 E-value=0.53 Score=56.02 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFET 493 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq 493 (584)
+..++..+...+.+++...++|.-.+++
T Consensus 403 l~~~i~~l~~~~~~~~~~i~eL~~~l~~ 430 (880)
T PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEE 430 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.34 E-value=0.6 Score=55.26 Aligned_cols=330 Identities=18% Similarity=0.200 Sum_probs=164.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 166 LANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSI 245 (584)
Q Consensus 166 L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~l 245 (584)
|...+..+...+..+-...+......+.|...|.+..... .+..+-.. .-.--.++...+..|+..+...-..|..+
T Consensus 133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~--~~~~~~~~-~~~~~~~~e~~~~~le~lle~~e~~~~~~ 209 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSA--EAEEEDNE-ALRRIREAEARIMRLESLLERKEKEHMEA 209 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--cchhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555555566666666666666677777775532000 00111111 11223445556666666665544444222
Q ss_pred ----HHH---------HHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCCCCCC
Q psy8072 246 ----SLK---------ISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEK 312 (584)
Q Consensus 246 ----s~e---------~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~~~~~ 312 (584)
... ..+++.-+....+++..|+..|.+++.++...+.+. +.+
T Consensus 210 r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~----------------------~~~--- 264 (775)
T PF10174_consen 210 REQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRG----------------------ELS--- 264 (775)
T ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------ccc---
Confidence 111 123444445555556666555555555554444311 110
Q ss_pred CCCCCCCC---CccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCC
Q psy8072 313 DVIKPEET---MSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPT 389 (584)
Q Consensus 313 ~~~~p~~g---~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~ 389 (584)
+.|-+. ...+-.....-++..++.++--...+..||..++.++..+..+..+++..
T Consensus 265 --~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~h------------------- 323 (775)
T PF10174_consen 265 --EADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQH------------------- 323 (775)
T ss_pred --ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------------------
Confidence 000000 00000011233555677777778888888888888888888888887666
Q ss_pred CcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHH-hHHHHHHHHH
Q psy8072 390 SLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSH---LSASKNNQQRQIEMM-ETEELMVQKK 465 (584)
Q Consensus 390 ~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~---Lq~~R~~~~~qie~m-E~~E~~~q~~ 465 (584)
+..+-++.-.--..|-.||+.+.-|..+....++++...... ++.+++.+.-.|+.| +.-+..-++.
T Consensus 324 ---------i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki 394 (775)
T PF10174_consen 324 ---------IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKI 394 (775)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443334444444566777777777766666666666555544 555555554444444 1122221111
Q ss_pred --HHHHHHHHHHHHHH----HHHHHHHHH------------HHHHHHhhhcccCCchHH--------HHHHHHHHHHHHH
Q psy8072 466 --LRGEMMQLEDALSQ----IRKEYEMLR------------IEFETNLAANEQTGPINR--------EMRHLITSLQNHN 519 (584)
Q Consensus 466 --l~s~v~qlE~~Lar----vR~ere~L~------------~E~eq~~aa~Eq~g~i~~--------Emr~LisSlq~~i 519 (584)
+..+|..|+..|.. +...++-|. ..+++.+..-+-.-..+. +...=+..+++.+
T Consensus 395 ~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~ 474 (775)
T PF10174_consen 395 NVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKEL 474 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443321 222222222 444444442111111111 2223345667777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCC
Q psy8072 520 KQIKGEVNRYKRKYKETSAEIQKVRISERSPWPS 553 (584)
Q Consensus 520 ~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~ 553 (584)
..+++++..+..++-|....+.-+|..+.+..-+
T Consensus 475 ~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~ 508 (775)
T PF10174_consen 475 KELKAKLESLQKELSEKELQLEDAKEEASKLASS 508 (775)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhc
Confidence 7777777777777777777777777766654433
No 28
>KOG0996|consensus
Probab=97.33 E-value=0.72 Score=55.95 Aligned_cols=65 Identities=17% Similarity=0.380 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh----------hcCCCCCCcccccCCCC-CcccccchhhHH
Q psy8072 511 LITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS----------ERSPWPSGYRLHAGGSG-FDSRWGRSFSLC 575 (584)
Q Consensus 511 LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~----------~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~ 575 (584)
=+..+.+..+.|.+++.+.+.++-|+.+-.++.|.+ --++..+|+---+|--| .|.+|-..||.|
T Consensus 564 ~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTa 639 (1293)
T KOG0996|consen 564 ELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTA 639 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHh
Confidence 344566666777777777777777777766665544 22356777777777654 477787777763
No 29
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.29 E-value=0.39 Score=55.58 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Q psy8072 235 NTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLE 293 (584)
Q Consensus 235 ~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ 293 (584)
+..|++..-.|...+ +......+.++.+|..++..+..+.....+++..|++.|++
T Consensus 6 l~qlq~Erd~ya~~l---k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 6 LKQLQAERDQYAQQL---KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443 23345566667777777777777777777777777766655
No 30
>KOG0250|consensus
Probab=97.27 E-value=0.8 Score=55.27 Aligned_cols=189 Identities=18% Similarity=0.289 Sum_probs=113.2
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhh
Q psy8072 328 KLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVI 407 (584)
Q Consensus 328 k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I 407 (584)
++-+.++.+.+.++-.+.+..|++.+++....+..+..+++.+ +++ .
T Consensus 317 k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~----------------------------~~~---~-- 363 (1074)
T KOG0250|consen 317 KLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE----------------------------IRE---I-- 363 (1074)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH---H--
Confidence 3455677778888888889999999999999999999888887 331 0
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 408 VETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEM 486 (584)
Q Consensus 408 ~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~ 486 (584)
...|+.+++.+..+-+.+..+++++... +...+ .|..- .+.|..+|..++..+.+||.++++
T Consensus 364 --~n~i~~~k~~~d~l~k~I~~~~~~~~~~---~~~~~------------~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 364 --ENSIRKLKKEVDRLEKQIADLEKQTNNE---LGSEL------------EERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334445555555544444444444110 11111 11111 233677888888888889888888
Q ss_pred HHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------HHHHHhhhhhcCC--CCC
Q psy8072 487 LRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETS-----------AEIQKVRISERSP--WPS 553 (584)
Q Consensus 487 L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~-----------~e~~~lr~~~~s~--~~~ 553 (584)
+.-+...--. -..+++..+..+.+.|.....+++.+|.--++.. .+|..=....+.| -|=
T Consensus 427 ~~~~~~~~~e-------e~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPl 499 (1074)
T KOG0250|consen 427 VKEKAKEEEE-------EKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPL 499 (1074)
T ss_pred HHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCc
Confidence 8766544222 2344555566667777777777777743322221 2222222222332 455
Q ss_pred CcccccCCCCCcccccchhhHHhh
Q psy8072 554 GYRLHAGGSGFDSRWGRSFSLCLM 577 (584)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~ 577 (584)
|.-+|+ -+.+|..+..-||+
T Consensus 500 G~~Vtl----~~~KWa~aIE~~L~ 519 (1074)
T KOG0250|consen 500 GKYVTL----KEPKWALAIERCLG 519 (1074)
T ss_pred cceeEe----cCcHHHHHHHHHHH
Confidence 655555 35699999999986
No 31
>KOG0977|consensus
Probab=97.20 E-value=0.64 Score=52.78 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
..-...++.++..+....+.+..+...+.....++..++.+++.+||+...-=.....+++-|-.
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lle 211 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLE 211 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455666666666666666666666666666777777777777776666555555555544443
No 32
>PRK02224 chromosome segregation protein; Provisional
Probab=97.13 E-value=1 Score=53.83 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
....+......++..+..+..+...+......+.+.+..++.++.+++.++.++..++..++.
T Consensus 315 ~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~ 377 (880)
T PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE 377 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554444444444444444444444444444444444444444444
No 33
>KOG0996|consensus
Probab=97.12 E-value=1.2 Score=54.27 Aligned_cols=230 Identities=21% Similarity=0.336 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCCCCC
Q psy8072 232 TEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKE 311 (584)
Q Consensus 232 q~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~~~~ 311 (584)
......+-.++.....+++.+.......+..++.+...+..+..+++++++...-++. +
T Consensus 376 ~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~--------------~------- 434 (1293)
T KOG0996|consen 376 KERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEK--------------A------- 434 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--------------C-------
Confidence 3333334445555666666666666666666666666666666666666662222222 0
Q ss_pred CCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhccccchhhhhhccC
Q psy8072 312 KDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDK----LHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVN 387 (584)
Q Consensus 312 ~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~----L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~ 387 (584)
|.+.. ...+.++.+++.+..+...=-.+|++ +..+-..+..++.+++-+
T Consensus 435 -----pe~~~-----~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~eke----------------- 487 (1293)
T KOG0996|consen 435 -----PEKAR-----IEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKE----------------- 487 (1293)
T ss_pred -----chhhH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-----------------
Confidence 00000 11233333333333333322222222 333333444555555555
Q ss_pred CCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy8072 388 PTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLR 467 (584)
Q Consensus 388 ~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~ 467 (584)
|..|...+..-..+-+..++++..|.+..+.+...+++....|++.++...+.--.+..-..- -..+.
T Consensus 488 -----------l~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~-l~~~k 555 (1293)
T KOG0996|consen 488 -----------LMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEE-LPSLK 555 (1293)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHH
Confidence 444455555555777788999999999999999999999999888887665542111110000 11144
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 468 GEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 468 s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~ 529 (584)
.++.+.+.+|.+++++-..|.-.+..+.+ -+.|++.-.++-++++..|++ +.|+
T Consensus 556 ~e~~~~~k~l~~~~~e~~~~~~~~~~~rq-------rveE~ks~~~~~~s~~kVl~a-l~r~ 609 (1293)
T KOG0996|consen 556 QELKEKEKELPKLRKEERNLKSQLNKLRQ-------RVEEAKSSLSSSRSRNKVLDA-LMRL 609 (1293)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhHHHHH-HHHH
Confidence 45666666666666555544444333333 467777777777777777776 3344
No 34
>KOG0995|consensus
Probab=97.09 E-value=0.81 Score=51.86 Aligned_cols=317 Identities=18% Similarity=0.246 Sum_probs=167.9
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHH
Q psy8072 158 DKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTK 237 (584)
Q Consensus 158 d~~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~ 237 (584)
+.+++++.|..|...-...++ ..|+++...++.|-..+.+.- ..|.-.+.+++.-..|..-++++|.-+..
T Consensus 214 ~~~~~~~Elk~~l~~~~~~i~---~~ie~l~~~n~~l~e~i~e~e------k~~~~~eslre~~~~L~~D~nK~~~y~~~ 284 (581)
T KOG0995|consen 214 NSSELEDELKHRLEKYFTSIA---NEIEDLKKTNRELEEMINERE------KDPGKEESLREKKARLQDDVNKFQAYVSQ 284 (581)
T ss_pred ccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 457888888888776655444 455666666666666666532 24556667777777777777777777777
Q ss_pred HHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHH-------------------------------HHhHH--
Q psy8072 238 LHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSK-------------------------------VQSRN-- 284 (584)
Q Consensus 238 L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k-------------------------------~~rr~-- 284 (584)
+..|-..|.-++..+...+...+.+++.|+.+.++++.-+++ ..+.+
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777777666666666443321 11111
Q ss_pred Hhh------------HHHHHHHHHHhhhh-hccccCCCCC-CCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHH
Q psy8072 285 DKL------------ENHLLEATEKVKLC-QQMHTEDGKE-KDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQEL 350 (584)
Q Consensus 285 ~KL------------~~~la~ale~~~s~-~~~~~~~~~~-~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~EL 350 (584)
.+| -.++.....++..+ ..- ..+-+ .+.+.+++|- .....--.-+..-+++...-...+..++
T Consensus 365 ~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~--~~n~~~~pe~~~~~~~-d~k~~V~~~l~el~~ei~~~~~~~~~~~ 441 (581)
T KOG0995|consen 365 LKLEIEDFFKELEKKFIDLNSLIRRIKLGIAEN--SKNLERNPERAATNGV-DLKSYVKPLLKELLDEISEELHEAENEL 441 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCcCCccCccccc-cchhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 11222222222221 100 00000 1111111111 1111111223334455555556666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHH
Q psy8072 351 DKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLA 430 (584)
Q Consensus 351 e~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~l 430 (584)
..|++...++---++.++-. ++ .++.++..+-.+.+.+
T Consensus 442 ~tLq~~~~~~~~~i~E~~~~----------------------------l~--------------~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 442 ETLQEHFSNKASTIEEKIQI----------------------------LG--------------EIELELKKAESKYELK 479 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------------HH--------------HHHHHHHHHHHHHHHH
Confidence 66666655555444444443 33 2333444443333333
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHH
Q psy8072 431 KTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRH 510 (584)
Q Consensus 431 k~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~ 510 (584)
+..-++..... ...++.++..=....-.+.+.|.+.+.-+.-++-+++.+-...++-+.+ +..++-+
T Consensus 480 k~e~eee~~k~-------~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~k------i~~ql~~ 546 (581)
T KOG0995|consen 480 KEEAEEEWKKC-------RKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQK------IAKQLFA 546 (581)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 33322222111 1122222221111122256666666677777777777776666665554 6778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8072 511 LITSLQNHNKQIKGEVNRYKRKYKETSAEIQ 541 (584)
Q Consensus 511 LisSlq~~i~~LksEv~R~K~k~kea~~e~~ 541 (584)
+|....+.+..+++.|.-.|..+--.-.|+.
T Consensus 547 ~i~~i~~~k~~iqs~le~~k~~~~~~~~ei~ 577 (581)
T KOG0995|consen 547 VIDQISDFKVSIQSSLENLKADLHKECEEIE 577 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988875544444443
No 35
>KOG0976|consensus
Probab=97.07 E-value=1 Score=52.71 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=53.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy8072 215 EAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKV 280 (584)
Q Consensus 215 ~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~ 280 (584)
..+++....+.+....||...+.+.++.+.+..+-+.|.|..+..+..+++++.+|++++.-.-.+
T Consensus 245 tp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a 310 (1265)
T KOG0976|consen 245 TPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRA 310 (1265)
T ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667778888888888888888888899999999999999999999999999999876544333
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.95 E-value=0.65 Score=48.53 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
+.+..+..+|+..++.++.....+..++.........++.++..|+..+++........+.+++-|.
T Consensus 64 d~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 64 DDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 3344444444444444444444444444444555555666666666666666555555555554444
No 37
>KOG0612|consensus
Probab=96.91 E-value=1.1 Score=54.55 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 234 QNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 234 ~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
+...+|-.++.+..++.....+...+++++.+++.++++++.....+.-..+|+
T Consensus 488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv 541 (1317)
T KOG0612|consen 488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKV 541 (1317)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333344556666666666666666666666666666666655555554433333
No 38
>KOG0999|consensus
Probab=96.88 E-value=0.31 Score=54.78 Aligned_cols=233 Identities=20% Similarity=0.270 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhh
Q psy8072 222 IEIQTENRNLTEQNTKL-HAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKL 300 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L-~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s 300 (584)
..|..|+.+|...++.. +++|.. ..-=+.. -.++..|+.++++++.+|+-++..++++...|+.+...
T Consensus 11 e~lr~eierLT~el~q~t~e~~qa-------AeyGL~l-LeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~--- 79 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTTEEKIQA-------AEYGLEL-LEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ--- 79 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44556666666555432 222222 2222233 34567899999999999999999888888777655421
Q ss_pred hhc-cccCCCCCCCCCCCCCCCc--cccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q psy8072 301 CQQ-MHTEDGKEKDVIKPEETMS--NVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNN 377 (584)
Q Consensus 301 ~~~-~~~~~~~~~~~~~p~~g~~--~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~ 377 (584)
++ +..++ .....+....+.. ..=-.++-+|+.++...+....+--.|.+.+...+.++..-+..+..+
T Consensus 80 -hkk~~~~g-~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~q------- 150 (772)
T KOG0999|consen 80 -HKKVARDG-EEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQ------- 150 (772)
T ss_pred -HHHhhccc-hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH-------
Confidence 11 11111 0000000000000 000134677888888777766666666777766666666555544444
Q ss_pred chhhhhhccCCCCcccccchhhccCChhhhhcChhHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHH
Q psy8072 378 EISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYK----CLQSAYSVLYNENQLAKTQAQEFQS---HLSASKNNQQR 450 (584)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk----~LqsQ~s~l~~e~~~lk~qL~e~r~---~Lq~~R~~~~~ 450 (584)
.+.+-++. .+|| -|-+.|+.|-.|...|..++--.|. .+...|.-..|
T Consensus 151 ---------------------R~rlr~el----Ke~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikR 205 (772)
T KOG0999|consen 151 ---------------------RRRLRDEL----KEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKR 205 (772)
T ss_pred ---------------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 33333333 3443 2455666676666666666544333 35566666666
Q ss_pred HHHHHh-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8072 451 QIEMME-----TEELMVQKK-LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANE 499 (584)
Q Consensus 451 qie~mE-----~~E~~~q~~-l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~E 499 (584)
..|++| .+|+.+-++ .+.++...=.+|++=|.++.-|+-|+.+-+.+++
T Consensus 206 leEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~ 260 (772)
T KOG0999|consen 206 LEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAED 260 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhh
Confidence 665542 345554333 6666666666788888999999999999887644
No 39
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.85 E-value=0.15 Score=53.97 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=80.2
Q ss_pred cCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 401 QLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQI 480 (584)
Q Consensus 401 ~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~Larv 480 (584)
+.+-..+....-+..||..+..|-.+..+| +.....|..+-..+..++.+.-.+=+..-.....+|+.|.+.|++.
T Consensus 150 ~~~~~~~~~~~~le~Lq~Klk~LEeEN~~L----R~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k 225 (306)
T PF04849_consen 150 NESSLSSQKCIQLEALQEKLKSLEEENEQL----RSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARK 225 (306)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 334444566677788888888887774444 4444445555555555533332221111222333444444444444
Q ss_pred -------HHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHhhhh
Q psy8072 481 -------RKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKE-------TSAEIQKVRIS 546 (584)
Q Consensus 481 -------R~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ke-------a~~e~~~lr~~ 546 (584)
..+---|..++-..-..--+-+.-+.|+...+.+-+.--..|.+|+.-++.||.| |+.|+..+|.+
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4444444444333222211223667777766666666667799999999999988 78888888754
No 40
>KOG0971|consensus
Probab=96.77 E-value=1.9 Score=51.24 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccC-ChhhhhcChhHHHHH
Q psy8072 339 AKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQL-PESVIVETTEYKCLQ 417 (584)
Q Consensus 339 ~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~ee~I~~S~~Yk~Lq 417 (584)
+.+=|..=-.|++.+.+.+-+|.-+++-||.+ +.+= .+--..+|-.||.|-
T Consensus 323 AEERaesLQ~eve~lkEr~deletdlEILKaE----------------------------meekG~~~~~~ss~qfkqlE 374 (1243)
T KOG0971|consen 323 AEERAESLQQEVEALKERVDELETDLEILKAE----------------------------MEEKGSDGQAASSYQFKQLE 374 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhcCCCCcccchHHHHHHH
Confidence 33334444567777777777777777777777 2221 333367788888887
Q ss_pred HHHHHH
Q psy8072 418 SAYSVL 423 (584)
Q Consensus 418 sQ~s~l 423 (584)
.|...|
T Consensus 375 qqN~rL 380 (1243)
T KOG0971|consen 375 QQNARL 380 (1243)
T ss_pred HHHHHH
Confidence 777666
No 41
>KOG0933|consensus
Probab=96.72 E-value=2 Score=51.55 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhH
Q psy8072 465 KLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITS----------LQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 465 ~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisS----------lq~~i~~LksEv~R~K~k~k 534 (584)
.+.+++..++..+..+-++.+.+..++..-++. -..+..||..++.+ ..-.++-|..+|.||++-.+
T Consensus 847 ~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k---~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~ 923 (1174)
T KOG0933|consen 847 SLKSELGNLEAKVDKVEKDVKKAQAELKDQKAK---QRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKA 923 (1174)
T ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH---HHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHH
Confidence 366677777777777777777777777766654 22344444333332 33456778899999999999
Q ss_pred HHHHHHHHhhhhhcCCCCCCcccccCCCC
Q psy8072 535 ETSAEIQKVRISERSPWPSGYRLHAGGSG 563 (584)
Q Consensus 535 ea~~e~~~lr~~~~s~~~~~~~~~~~~~~ 563 (584)
.+..++.+|.+ ..+|.++-.-|.|--|
T Consensus 924 ~~~k~v~~l~~--k~~wi~~ek~~fgk~g 950 (1174)
T KOG0933|consen 924 NARKEVEKLLK--KHEWIGDEKRLFGKKG 950 (1174)
T ss_pred HHHHHHHHHHH--hccchhHHHHhhcCCC
Confidence 99999999965 4578887777776433
No 42
>KOG0978|consensus
Probab=96.65 E-value=2.1 Score=50.06 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=126.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHH
Q psy8072 215 EAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEA 294 (584)
Q Consensus 215 ~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~a 294 (584)
..|...|..|...+..++..+..++++...|..+++.....+.-++..+..+...++...-...+..+.+...-.++
T Consensus 51 ~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~--- 127 (698)
T KOG0978|consen 51 DELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHL--- 127 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 34566788888899999999999999999999999999999999999999999999999999999998443332222
Q ss_pred HHHhhhhhccccCCCCCCCCC-CCC-CCCccc----c---chhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 295 TEKVKLCQQMHTEDGKEKDVI-KPE-ETMSNV----S---QKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVE 365 (584)
Q Consensus 295 le~~~s~~~~~~~~~~~~~~~-~p~-~g~~~~----~---~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~ 365 (584)
.- -..|....++... .+.. .+. ...++. + ..+++-++..+.+...-......+|..+-........++.
T Consensus 128 ~t-~~~~~~~~~~~~t-~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 205 (698)
T KOG0978|consen 128 NT-YGNGNGSLSGTIT-VNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELR 205 (698)
T ss_pred CC-CCCcccccCcccc-cchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 21 2221111111100 0000 000 111111 1 1235666677777777777777777777777777777744
Q ss_pred HhhhhhhhccccchhhhhhccCCCCcccccchhhccC-ChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 366 KLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQL-PESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSH 440 (584)
Q Consensus 366 ~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~ 440 (584)
-+++. -..++.+. +++.|.+ ..|..+-+-+...+++.+.+....+.....
T Consensus 206 ~~~~N------------------------E~l~~~~~~~~e~~~~-~~~~~lee~~~~~~~e~~~l~~~~e~~~~~ 256 (698)
T KOG0978|consen 206 CLQYN------------------------EELQRKTMESDEAINS-KKVIKLEEKLAQCVKEYEMLRKEFENNKSQ 256 (698)
T ss_pred HHHhh------------------------hhcccccchhhhhhcc-chHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Confidence 43321 00113322 3444444 448888888888888888886666554444
No 43
>KOG4643|consensus
Probab=96.53 E-value=2.9 Score=50.26 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh--hhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAV--NGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~--~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
+.+...+.+|..-...|++..--|..+++.++..- ...+++|-.|+..+++++.+...-+++..+|
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34666777788888888888888888888887776 8889999999999999999999999966665
No 44
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.52 E-value=2.2 Score=48.85 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=55.5
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhh
Q psy8072 328 KLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVI 407 (584)
Q Consensus 328 k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I 407 (584)
.+..+...+.++..+... -+|+.....+..+..++..|-.. +.
T Consensus 257 ~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~----------------------------le------- 299 (569)
T PRK04778 257 EIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDI----------------------------LE------- 299 (569)
T ss_pred HHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHH----------------------------HH-------
Confidence 467777777776544332 36888888888888888888766 33
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy8072 408 VETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQ 449 (584)
Q Consensus 408 ~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~ 449 (584)
.+-..++.+......+.+-..+++.+.......++..+.+|.
T Consensus 300 kE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 300 REVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 122456666666666666666667777666666666655533
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.48 E-value=3.8 Score=51.11 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q psy8072 61 EHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILL 100 (584)
Q Consensus 61 ~~~LE~rieeLe~rQ~~~D~~L~vVnr~WnQL~ddi~lL~ 100 (584)
...++.++..++.+.......+.....-|+++.+++..-.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~ 315 (1201)
T PF12128_consen 276 EQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKEL 315 (1201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777788888888888888888888888888776644
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.44 E-value=0.22 Score=52.98 Aligned_cols=165 Identities=16% Similarity=0.230 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q psy8072 353 LHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKT 432 (584)
Q Consensus 353 L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~ 432 (584)
+....-.+.+...+|+.+ -+||-|-..-. ..+-+.|. ..+..|+.....|......++.
T Consensus 119 ~m~~q~~~vK~~aRl~aK--------~~WYeWR~~ll---~gl~~~L~----------~~~~~L~~D~~~L~~~~~~l~~ 177 (325)
T PF08317_consen 119 LMDNQFQLVKTYARLEAK--------KMWYEWRMQLL---EGLKEGLE----------ENLELLQEDYAKLDKQLEQLDE 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555678888888888 68999984321 11111111 3445556666666555555544
Q ss_pred HHHHHHHH---HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHH
Q psy8072 433 QAQEFQSH---LSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMR 509 (584)
Q Consensus 433 qL~e~r~~---Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr 509 (584)
-+...+.. |..+-........+++..+...-..++.++...+.++...|.+.+.|+.+++..... +.++.
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~-------i~~~~ 250 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEK-------IEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 44433333 333333333333334444444444588888899999998888888888888876664 56666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHhhhhhcC
Q psy8072 510 HLITSLQNHNKQIKGEVNRYKRKYKE-TSAEIQKVRISERS 549 (584)
Q Consensus 510 ~LisSlq~~i~~LksEv~R~K~k~ke-a~~e~~~lr~~~~s 549 (584)
.-...+..+|..++..+... +- +..||..|++.+..
T Consensus 251 ~~k~~l~~eI~e~~~~~~~~----r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 251 EQKQELLAEIAEAEKIREEC----RGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH
Confidence 66666666666555444333 22 67778888877554
No 47
>KOG4674|consensus
Probab=96.37 E-value=5.1 Score=51.32 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIE 490 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E 490 (584)
+.+..|...++.+ ..+....+..+....+ +....+..+......+.++|.+|+++|+.+++.-..-..+
T Consensus 759 ~t~~rL~~e~~~l-------~~e~~~L~~~l~~lQt----~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~ 827 (1822)
T KOG4674|consen 759 ETEERLSQELEKL-------SAEQESLQLLLDNLQT----QKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666 4444444444333333 2233345566667778899999999999999886655555
Q ss_pred HHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 491 FETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 491 ~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
+.+---.++ -...+.+.+|..+...+..+..+|.-....+-.....+..|.....+
T Consensus 828 ~r~l~~~~~---~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 828 LRELTNSLE---KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred HHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443322 33334444444444444444444444444444444444444444443
No 48
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.29 E-value=1.6 Score=44.82 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=22.7
Q ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 406 VIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQS 439 (584)
Q Consensus 406 ~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~ 439 (584)
.|....+|..|+..+..+..+...|..++.+...
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~ 117 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSLEDELAELME 117 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555577888888887777777777666644433
No 49
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.18 E-value=1.8 Score=44.14 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 512 ITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 512 isSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
+..|+..|..|+.++..+|.+++.++.++...=.+
T Consensus 199 v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 199 VKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999665333
No 50
>KOG0994|consensus
Probab=96.17 E-value=1.5 Score=53.18 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH---HHHHHHHhhhhh-cccc
Q psy8072 231 LTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENH---LLEATEKVKLCQ-QMHT 306 (584)
Q Consensus 231 Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~---la~ale~~~s~~-~~~~ 306 (584)
++.....+.+.-..-..-....+|.+...-+.+...+..|+.++.++.-+++.+.--.+. |...+++++-.. +..+
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~ 1640 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSA 1640 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 333333333333333444445555555555666666666666666666666533211111 222223222211 1111
Q ss_pred CCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 307 EDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 307 ~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
++...-.+....-.......++++.|...++-...|+++|+..-...++.-..|..+-.+|=.+
T Consensus 1641 ~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~ 1704 (1758)
T KOG0994|consen 1641 EAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQ 1704 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 1100000000000111122245788999999999999999998888887777777777766555
No 51
>KOG0971|consensus
Probab=96.15 E-value=4.3 Score=48.39 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Q psy8072 217 VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENH 290 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~ 290 (584)
+.....+|+.+..+.+.+...+++-.-.+..++..+.|.+.-+--++.=.++.-|.+|.|++.+..|++-|+..
T Consensus 274 im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 274 IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777777777777777777777777777777776666666777777788888777777776643
No 52
>KOG1029|consensus
Probab=96.14 E-value=4.1 Score=47.92 Aligned_cols=163 Identities=17% Similarity=0.248 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHH
Q psy8072 344 NNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVL 423 (584)
Q Consensus 344 ~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l 423 (584)
..+-.||+.|+..++.|...+++...+ ++| .+ .+.-.+..|....
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~--------------------~tt-----~k----------t~ie~~~~q~e~~ 484 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVD--------------------ITT-----QK----------TEIEEVTKQRELM 484 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheec--------------------cch-----HH----------HHHHHhhhHHHHH
Confidence 466788999999999999999999888 222 22 2334567777888
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 424 YNENQLAKTQAQEFQSHLS---ASKNNQQRQIEMMET---EELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 424 ~~e~~~lk~qL~e~r~~Lq---~~R~~~~~qie~mE~---~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
+-++.+|++++.|++..|+ -+|.-+-.|++.+-+ .+-++...|..-....|.-..+|+..-|.|..|.+-.+..
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~e 564 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNE 564 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998855 445545555555533 2333344467666677777788888888888888777664
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8072 498 NEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVR 544 (584)
Q Consensus 498 ~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr 544 (584)
....+..|+.|-......+-+.+-...--+.++|++..-+-.|.
T Consensus 565 ---idi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~ 608 (1118)
T KOG1029|consen 565 ---IDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELI 608 (1118)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333444444444434566677776665554
No 53
>KOG0995|consensus
Probab=96.10 E-value=3.5 Score=46.91 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 235 NTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 235 ~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
...|..+...|...+..+++-......+.+.+.+.|+.+..++++-+-.+++|
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~l 313 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKL 313 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666666666666555544444
No 54
>KOG0963|consensus
Probab=96.09 E-value=3.8 Score=47.09 Aligned_cols=109 Identities=19% Similarity=0.288 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 418 SAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 418 sQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
..+...-.++.+|...+...++-+..++.+|..+|..++.. -+...+.+.+++..|.. |++||++.-|+.-.++=
T Consensus 285 ~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~----l~~~~~~leel~~kL~~-~sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 285 SVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKE----LKAKISELEELKEKLNS-RSDYEEIKKELSILKAI 359 (629)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHHh
Confidence 33333566777889999999999999999999999555442 23356667777766644 59999999988876652
Q ss_pred ----cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 498 ----NEQTGPINREMRHLITSLQNHNKQIKGEVNRYKR 531 (584)
Q Consensus 498 ----~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~ 531 (584)
++.+++-...++.|=+.|-+.|..|+.|+.-||-
T Consensus 360 ef~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~ 397 (629)
T KOG0963|consen 360 EFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRV 397 (629)
T ss_pred hcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhc
Confidence 2333444466788888888889999988888873
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.06 E-value=3.5 Score=46.48 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=19.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSH 440 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~ 440 (584)
...|-.|.++...+..++..+...+.++...
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~ 328 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEI 328 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777766666665555544433
No 56
>KOG1853|consensus
Probab=96.04 E-value=2.2 Score=44.03 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQK 542 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~ 542 (584)
++.|..++|-+-.....++.-+|++++-. .-|=-+++.|=-.+-..|--.|+|+|..+++...|+.-
T Consensus 116 eLEQaNDdLErakRati~sleDfeqrLnq-------AIErnAfLESELdEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 116 ELEQANDDLERAKRATIYSLEDFEQRLNQ-------AIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHhccHHHHhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888888888888888888763 12333455554455556666789999999999998863
No 57
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.99 E-value=4.8 Score=47.46 Aligned_cols=78 Identities=13% Similarity=0.255 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQN-------HNKQIKGEVNRYKRKYKETSA 538 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~-------~i~~LksEv~R~K~k~kea~~ 538 (584)
.-+++.++-.+|-.+|.+|+++.....+.+.. -..-+..+..-+.++.. ++..|+.+|.-...-+.|+++
T Consensus 364 av~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~---~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~ 440 (717)
T PF09730_consen 364 AVSEVIQLKAELKALKSKYNELEERYKQEKDR---LESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQG 440 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45567777777777777777777755554442 12333444444445554 888899999888877777666
Q ss_pred HHHHhhhh
Q psy8072 539 EIQKVRIS 546 (584)
Q Consensus 539 e~~~lr~~ 546 (584)
.++.....
T Consensus 441 ~LnsAQDE 448 (717)
T PF09730_consen 441 SLNSAQDE 448 (717)
T ss_pred HHHHHHHH
Confidence 66654443
No 58
>KOG4674|consensus
Probab=95.90 E-value=8.3 Score=49.51 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=55.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhcc--CChhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQ--LPESV 406 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--l~ee~ 406 (584)
+.++...++.+.+...+-...+..|..+...|-+++...+.. +.+ +.+ ..+++
T Consensus 846 i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~----~~~---------------------l~~~~~~~d~ 900 (1822)
T KOG4674|consen 846 VDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQ----LLN---------------------LDSKSSNEDA 900 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----Hhh---------------------ccccchhhhh
Confidence 566666777777766666677777777777777777777766 111 221 12333
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy8072 407 IVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASK 445 (584)
Q Consensus 407 I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R 445 (584)
-..=+.++....+..++..+..-...+..+|.......-
T Consensus 901 ~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e 939 (1822)
T KOG4674|consen 901 TILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLE 939 (1822)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344777777777775555555555555555543333
No 59
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.90 E-value=2.9 Score=44.47 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKY 533 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ 533 (584)
+...+...|-++|.++-+|..-+|+ |=.+||+.|.++|..|..+-..+..++
T Consensus 150 e~~~~q~~le~Lr~EKVdlEn~LE~-------------EQE~lvN~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 150 EKSAKQEELERLRREKVDLENTLEQ-------------EQEALVNRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHhHHHHHHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556677766665555554 345799999999999999988886553
No 60
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.89 E-value=4.3 Score=46.05 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=14.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQ 356 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e 356 (584)
.++...++-++.+...-..||.+-...
T Consensus 217 ~e~~~~l~l~~~~~~~~~~el~~Yk~k 243 (511)
T PF09787_consen 217 GELQEQLELLKAEGESEEAELQQYKQK 243 (511)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445555555555555555555533
No 61
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.88 E-value=3.9 Score=45.60 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=39.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISEL-QDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l-~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
....|..+...++..+.....+...+..+.... -+.......++..+..++..++.++..++.+...|.
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666555555554433211 112233456777777777777777777777444443
No 62
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.85 E-value=3 Score=44.04 Aligned_cols=67 Identities=24% Similarity=0.413 Sum_probs=58.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.+.+.-++|..++..+.+.-+.|.++-|.|..+.+++++...-.-.+++++++..+++-..+...++
T Consensus 24 e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~ 90 (294)
T COG1340 24 ELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRK 90 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888889999999999999999999999999999999999999999999998888888776
No 63
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.75 E-value=3.4 Score=43.92 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy8072 472 QLEDALSQIRKEYEMLRIEFETNLAANEQTGPIN--REMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEI 540 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~--~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~ 540 (584)
.|-....++-.++-.|+.++++...+--.+.+++ ......+..+..||..|..||.|+|..+--++.+.
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~ 252 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEH 252 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444666788889999988655311111332 22334456788999999999999998887776654
No 64
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.74 E-value=3.5 Score=43.88 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHH
Q psy8072 430 AKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMR 509 (584)
Q Consensus 430 lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr 509 (584)
.+.++......|..-...+.+|-+++ ..|-++|.+++..+.++-.|-|+|..-+...+..+. ....|++
T Consensus 211 An~qia~LseELa~k~Ee~~rQQEEI--------t~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~---~L~aEL~ 279 (306)
T PF04849_consen 211 ANQQIASLSEELARKTEENRRQQEEI--------TSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQR---QLQAELQ 279 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 36666555555544444333332221 227788888899999999999999888888777522 2344444
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHh
Q psy8072 510 HLITSLQNHNK---QIKGEVNRYKR 531 (584)
Q Consensus 510 ~LisSlq~~i~---~LksEv~R~K~ 531 (584)
.|=....+-++ --+.|+..||.
T Consensus 280 elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 280 ELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44333333333 34666666654
No 65
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.68 E-value=0.73 Score=47.34 Aligned_cols=129 Identities=21% Similarity=0.256 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 412 EYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEMLRIE 490 (584)
Q Consensus 412 ~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~E 490 (584)
+|.-|+.|++.+-.++..++.++...+..+.+..+.... ..+.. -..+..++..|+++|+.++.++..|..+
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~-------~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL-------RALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777666666677777777777655552211 11111 2225667777778888888777777777
Q ss_pred HHHHhhhcccCCchHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHhhhhh
Q psy8072 491 FETNLAANEQTGPINREMRHL----ITSLQNHNKQIKGEVNRYKRKY-KETSAEIQKVRISE 547 (584)
Q Consensus 491 ~eq~~aa~Eq~g~i~~Emr~L----isSlq~~i~~LksEv~R~K~k~-kea~~e~~~lr~~~ 547 (584)
++....+-....+-..+.+.- +.-....+..+.++...++.+. .++-+....+|+-.
T Consensus 126 i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~ 187 (239)
T COG1579 126 IEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Confidence 666544311111222222222 2223333334444444444332 34555555665544
No 66
>KOG0250|consensus
Probab=95.60 E-value=8 Score=47.11 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=101.6
Q ss_pred hccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 399 IRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALS 478 (584)
Q Consensus 399 L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~La 478 (584)
+..+-+++=....++.++..-+..+..+.+.++.+..+.....+..+.....-.+.+...+.+....+..++.++++.+-
T Consensus 325 i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~ 404 (1074)
T KOG0250|consen 325 IGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLE 404 (1074)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44455555566688899999999999999999988888888877766665555555555555555567777788888888
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 479 QIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 479 rvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
++-.+.+.++-....... -..+++.=+..-+.+....++++.-++++...-+.+|..|++
T Consensus 405 ~L~~evek~e~~~~~L~~-------e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 405 QLKKEVEKLEEQINSLRE-------ELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887777777764444433 345566666667777777888888888888888888888865
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.57 E-value=0.86 Score=53.52 Aligned_cols=118 Identities=20% Similarity=0.266 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 415 CLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETN 494 (584)
Q Consensus 415 ~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~ 494 (584)
.++..++.+-.+.++|...+-..-...|.+|.+. ...|-....+.+ .-..+|.+|+.-|+.|-.-+ .
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l-------~~LEkrL~eE~~-~R~~lEkQL~eErk~r~~ee-----~ 523 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSL-------QQLEKRLAEERR-QRASLEKQLQEERKARKEEE-----E 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHH-----H
Confidence 6677777776666655555555555555555322 122222111111 22245556666666653321 1
Q ss_pred hhhcccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q psy8072 495 LAANEQT-GPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISE 547 (584)
Q Consensus 495 ~aa~Eq~-g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~ 547 (584)
.++.-.+ ...++. .-..++..+..+|+.|+.++++.+|.....+..+..+.
T Consensus 524 ~aar~~~~~~~~r~--e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 524 KAARALAQAQATRQ--ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred hhhhccccchhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221101 122333 55667888889999999999888877666666555544
No 68
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.56 E-value=6.5 Score=45.78 Aligned_cols=98 Identities=19% Similarity=0.282 Sum_probs=57.2
Q ss_pred cCChHHHHHHHHh---HHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHH
Q psy8072 156 TWDKEELDEKLAN---RVQVSKRAVAKII--QAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRN 230 (584)
Q Consensus 156 s~d~~e~e~~L~~---R~~~tk~~v~~lv--~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~ 230 (584)
+-|.+.++. |.. .....+.++..|+ +.++++..-.+.+.....+.. . ...+..+...
T Consensus 152 fFDGE~I~~-la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~---------~--------~~~~~~~~~~ 213 (650)
T TIGR03185 152 FFDGEKIEA-LANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSE---------L--------PSSILSEIEA 213 (650)
T ss_pred cccHHHHHH-HhccccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc---------c--------chHHHHHHHH
Confidence 346677764 333 2334677777776 556666554555444433321 1 1334455666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHH
Q psy8072 231 LTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQID 271 (584)
Q Consensus 231 Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLe 271 (584)
|+..+..+..+...+..++..++..+...+.++.+++..+.
T Consensus 214 le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 214 LEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777777776666666666666666666444
No 69
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.38 E-value=12 Score=47.78 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCchHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q psy8072 463 QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQ---TGPINREMRHLI-----------TSLQNHNKQIKGEVNR 528 (584)
Q Consensus 463 q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq---~g~i~~Emr~Li-----------sSlq~~i~~LksEv~R 528 (584)
+...+.++..+++....++..|..++-+.++..+.=.+ --|.|..-..-+ .+-+.=+..|+..+.+
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~ 639 (1486)
T PRK04863 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLER 639 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHH
Confidence 44466666666666666655555555555543322000 114343333333 3345556677777777
Q ss_pred HHhhhHHHHHHHHHhhhhhcC--CCCCCcccccCCC
Q psy8072 529 YKRKYKETSAEIQKVRISERS--PWPSGYRLHAGGS 562 (584)
Q Consensus 529 ~K~k~kea~~e~~~lr~~~~s--~~~~~~~~~~~~~ 562 (584)
+ +++..+...+.++... -....-.-+.||.
T Consensus 640 ~----~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g~ 671 (1486)
T PRK04863 640 E----RELTVERDELAARKQALDEEIERLSQPGGSE 671 (1486)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 7 8999888888888777 3444444444443
No 70
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.29 E-value=0.017 Score=67.46 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred ChhhhhcChhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 403 PESVIVETTEYKCLQSAYSVLYNENQL---AKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQ 479 (584)
Q Consensus 403 ~ee~I~~S~~Yk~LqsQ~s~l~~e~~~---lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~Lar 479 (584)
.++.......++.|++.+..|..+... +-..++.|+.+|...- .+.++++.++..=. .+-.....+|+++.+
T Consensus 283 ~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~-~lk~qvk~Lee~N~----~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 283 NEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLE-DLKRQVKELEEDNA----VLLETKAMLEEELKK 357 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 444445556777778887777555444 3555666666654332 23344433322111 122245556666666
Q ss_pred HHH
Q psy8072 480 IRK 482 (584)
Q Consensus 480 vR~ 482 (584)
++.
T Consensus 358 ~~~ 360 (713)
T PF05622_consen 358 ARA 360 (713)
T ss_dssp ---
T ss_pred hHH
Confidence 554
No 71
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.28 E-value=0.013 Score=68.45 Aligned_cols=177 Identities=17% Similarity=0.297 Sum_probs=31.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcCh
Q psy8072 332 LQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETT 411 (584)
Q Consensus 332 L~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~ 411 (584)
|...+.....-...+...++.|..+...+..++..++.. +.... .
T Consensus 355 L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~----------------------------~~~~~-------~ 399 (722)
T PF05557_consen 355 LTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEAS----------------------------LEALK-------K 399 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHH-------H
Confidence 334444455555555666667777777777777777766 33221 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 412 EYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASK--NNQQRQIEMMETEELM---VQKKLRGEMMQLEDALSQIRKEYEM 486 (584)
Q Consensus 412 ~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R--~~~~~qie~mE~~E~~---~q~~l~s~v~qlE~~LarvR~ere~ 486 (584)
.-.-|+.|...+.+|..-|+.+|+.|-......= +....+++.++.-... ...+++.+|..++.++.........
T Consensus 400 ~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~ 479 (722)
T PF05557_consen 400 LIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNET 479 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 2246788888888888888888877766532211 1111222222221111 1223555666666666655554455
Q ss_pred HHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 487 LRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 487 L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
+..++.-.........+.+.....-++.|+.+|..|+.++.+++........+|.++
T Consensus 480 ~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 480 LEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp --------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555554322221111132333445556689999999999999988888888888773
No 72
>PRK09039 hypothetical protein; Validated
Probab=95.22 E-value=2.9 Score=45.09 Aligned_cols=117 Identities=15% Similarity=0.271 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQ 302 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~ 302 (584)
.|..++..+..+++.|+.+.-. +-+.+........+|+..|.+++.+|..++.+-.+|+..++...
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~-------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~------- 108 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAE-------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELA------- 108 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence 3444555666666655555444 44445777788888888888888888877775555655222100
Q ss_pred ccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 303 QMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 303 ~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+..+........+..+|.+.+.+.+.-..++..|+.+...|..++..|+..
T Consensus 109 -----------------~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 109 -----------------GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred -----------------hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011123455666666666666666666666666666666665555555
No 73
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.07 E-value=7.4 Score=43.53 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=102.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8072 160 EELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLH 239 (584)
Q Consensus 160 ~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~ 239 (584)
+..++.|..++... +.-|..-++++...++.|...+...- ......+.|...-..|..--.+++.-+..+.
T Consensus 252 ~~~e~Elk~~f~~~---~~~i~~~i~~lk~~n~~l~e~i~ea~------k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk 322 (622)
T COG5185 252 EPSEQELKLGFEKF---VHIINTDIANLKTQNDNLYEKIQEAM------KISQKIKTLREKWRALKSDSNKYENYVNAMK 322 (622)
T ss_pred CchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45566665555433 33444566666666666666666532 1112233344444555555666666666666
Q ss_pred HHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH----------HhhHHHHHHHHHHhhhhhccccCCC
Q psy8072 240 AKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN----------DKLENHLLEATEKVKLCQQMHTEDG 309 (584)
Q Consensus 240 ~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~----------~KL~~~la~ale~~~s~~~~~~~~~ 309 (584)
.|-..+.-.+..++..+...+.+++-|+...+.+++.+.+-.--. .+|.+. +.+ +
T Consensus 323 ~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~re----L~~------i----- 387 (622)
T COG5185 323 QKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRE----LDK------I----- 387 (622)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH----HHH------h-----
Confidence 666666666666777777777777777777766666554432211 111111 100 0
Q ss_pred CCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 310 KEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 310 ~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+ .+.+.|...+.+.+-+|.-+..+|+++-.+...|...+..-...
T Consensus 388 ---------~-------~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~ 432 (622)
T COG5185 388 ---------N-------IQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQ 432 (622)
T ss_pred ---------c-------chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 0 12467788888888888899999999998888888887766544
No 74
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.96 E-value=5.5 Score=41.58 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
-..+..+..++|.+++.|+.+.-.+..++...+.+++..+++++.|+++++++..++..-.. .|..
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~---~l~~ 105 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE---LLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 35667788888999999999988999999888888999999999999999998887766554 5554
No 75
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.88 E-value=0.0073 Score=70.55 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHH
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELR 267 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~ 267 (584)
+..++..+..++..|+.+++....+...+.-.+..++.++..|.
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~ 404 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALE 404 (713)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666333333333333333333
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.77 E-value=9.2 Score=43.14 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
...+..++..++.+..+...+..++..+++++......+..+.+.|.++..++.+++..+.+++
T Consensus 212 ~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~ 275 (562)
T PHA02562 212 GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQ 275 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666666666666666666656666666666666666666666444444
No 77
>PRK03918 chromosome segregation protein; Provisional
Probab=94.74 E-value=12 Score=44.54 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8072 505 NREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 505 ~~Emr~LisSlq~~i~~LksEv 526 (584)
+.+++.-+..+...+..++.++
T Consensus 682 ~~~l~~~i~~l~~~i~~~~~~~ 703 (880)
T PRK03918 682 LEELEKRREEIKKTLEKLKEEL 703 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 78
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.62 E-value=7.2 Score=41.28 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=27.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 332 LQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 332 L~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+.-+.+|..-|=.+--.++-.|+..|..|.+++.+.+.+
T Consensus 121 fqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK 159 (305)
T PF14915_consen 121 FQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESK 159 (305)
T ss_pred HHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHH
Confidence 445556666666666667777777777777777777766
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.60 E-value=11 Score=43.31 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELS 278 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~ 278 (584)
...+.+.++..-.+.+.+..++..+...-...+.++.+|+....+++-.+.
T Consensus 107 ~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll 157 (569)
T PRK04778 107 INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL 157 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555444443
No 80
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.53 E-value=19 Score=45.73 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 336 LEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 336 leE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
++++..-...+..++..+.++.....+.+...+..
T Consensus 795 l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~ 829 (1353)
T TIGR02680 795 AAEAERQAESAERELARAARKAAAAAAAWKQARRE 829 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555544
No 81
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.50 E-value=10 Score=42.41 Aligned_cols=88 Identities=18% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8072 161 ELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHA 240 (584)
Q Consensus 161 e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~ 240 (584)
.++..+..+...+..+..-|-+.++....+.+..-..+..=.. .+|...++-...+...-..+..+...++..+..+++
T Consensus 147 yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~-~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a 225 (498)
T TIGR03007 147 FVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ-ENGGILPDQEGDYYSEISEAQEELEAARLELNEAIA 225 (498)
T ss_pred HHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555444333332110 011122322222333334455555555555555555
Q ss_pred HHHHhHHHH
Q psy8072 241 KYHSISLKI 249 (584)
Q Consensus 241 khk~ls~e~ 249 (584)
+...+...+
T Consensus 226 ~~~~l~~~l 234 (498)
T TIGR03007 226 QRDALKRQL 234 (498)
T ss_pred HHHHHHHHh
Confidence 555555443
No 82
>KOG0999|consensus
Probab=94.42 E-value=12 Score=42.80 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=66.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhc
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVE 409 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~ 409 (584)
.-|.+++.|++.=-+.=++|--+|.+||..|++++..|+-. .|.|.- |--.++.+.
T Consensus 152 ~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s-QVEyEg-----------------lkheikRle------ 207 (772)
T KOG0999|consen 152 RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS-QVEYEG-----------------LKHEIKRLE------ 207 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh-hhhhhH-----------------HHHHHHHHH------
Confidence 35778899999888888999999999999999999999754 222222 000122222
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQR 450 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~ 450 (584)
.+--.|.+|+...++=-.=.-.||+++-..|+++|.+...
T Consensus 208 -Ee~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~a 247 (772)
T KOG0999|consen 208 -EETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNA 247 (772)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 2234567777777554444477888888889988875443
No 83
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.41 E-value=8.6 Score=41.25 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 505 NREMRHLITSLQNHNKQIKGEVNRYKR 531 (584)
Q Consensus 505 ~~Emr~LisSlq~~i~~LksEv~R~K~ 531 (584)
|+=++.=+..++++...+++-+.+||.
T Consensus 198 NRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 198 NRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444466777777777777777754
No 84
>KOG0994|consensus
Probab=94.39 E-value=17 Score=44.70 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8072 337 EEAKELANNRLQELDKLHLQ 356 (584)
Q Consensus 337 eE~k~LA~~Rl~ELe~L~~e 356 (584)
|....-|+.|+.||+...++
T Consensus 1611 E~~~~~a~q~~~eL~~~~e~ 1630 (1758)
T KOG0994|consen 1611 EKLATSATQQLGELETRMEE 1630 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555444
No 85
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.25 E-value=9 Score=40.85 Aligned_cols=67 Identities=15% Similarity=0.288 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 474 EDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 474 E~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
|..|..--.-|-+=--+|+..+.. +..+..-||.=+.-..+.|..|+.|..-||+||..+...|..+
T Consensus 211 E~~Lr~QL~~Y~~Kf~efq~tL~k---SNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m 277 (309)
T PF09728_consen 211 EKELREQLNLYSEKFEEFQDTLNK---SNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM 277 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333333444445667777776 5566666666666667889999999999999998887776654
No 86
>KOG0980|consensus
Probab=94.11 E-value=11 Score=45.05 Aligned_cols=192 Identities=18% Similarity=0.216 Sum_probs=87.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhc
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVE 409 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~ 409 (584)
.+|+.++.+++.++..-+.|-++|+.++..+...-++++-- .+-+..+......-
T Consensus 368 ~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka-------------------------~~~~ee~e~~~l~~ 422 (980)
T KOG0980|consen 368 LALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKA-------------------------QVLVEEAENKALAA 422 (980)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHhHHHHHHHH
Confidence 45555555666666666666666666655554443333322 00012222223333
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMM-----ETEELMVQKK-LRGEMMQLEDALSQIRKE 483 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~m-----E~~E~~~q~~-l~s~v~qlE~~LarvR~e 483 (584)
-..|..++.-|+.++.+...|..+.+....++.....+.-.-.++. .-++++++.. ..+......+.+-.+|.|
T Consensus 423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E 502 (980)
T KOG0980|consen 423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQE 502 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456666666677776666666666666655554444322111111 0012222111 333333444455555555
Q ss_pred HHHHHHHHHHHhhhcccCC-chHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhhhh
Q psy8072 484 YEMLRIEFETNLAANEQTG-PINREMRHLITSLQNHNKQIKGEVNRYK---RKYKETSAEIQKVRIS 546 (584)
Q Consensus 484 re~L~~E~eq~~aa~Eq~g-~i~~Emr~LisSlq~~i~~LksEv~R~K---~k~kea~~e~~~lr~~ 546 (584)
..-|..++++....-.-.. ..+.+.-+|-..+......+...+.|.- -+.+|++-.|+.|+.+
T Consensus 503 l~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~ 569 (980)
T KOG0980|consen 503 LALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELD 569 (980)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 5555555555433201111 3444444444444444444444444431 1334555555555554
No 87
>KOG4809|consensus
Probab=94.03 E-value=14 Score=42.16 Aligned_cols=285 Identities=16% Similarity=0.159 Sum_probs=138.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHH
Q psy8072 217 VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATE 296 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale 296 (584)
..+.+.+|.+.+.-||...+.--+....|-...+.|....-...++++.+.=-||.--.+..+.++ .|..|-.
T Consensus 336 ~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~-------qLkkAh~ 408 (654)
T KOG4809|consen 336 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEA-------QLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 344455555555555555555555555666666666666666666666666666655555554444 2322221
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q psy8072 297 KVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFN 376 (584)
Q Consensus 297 ~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~ 376 (584)
...++ . -.| ++. ....+|+.+..+.+.+..+ .+.+-.++..+++|++.+|++
T Consensus 409 -------~~dda---r--~~p--e~~----d~i~~le~e~~~y~de~~k----aqaevdrlLeilkeveneKnD------ 460 (654)
T KOG4809|consen 409 -------IEDDA---R--MNP--EFA----DQIKQLEKEASYYRDECGK----AQAEVDRLLEILKEVENEKND------ 460 (654)
T ss_pred -------hhHhh---h--cCh--hhH----HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcc------
Confidence 11111 0 000 110 1235555555555555443 445566788999999999999
Q ss_pred cchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHH----HHHHHHHH---HHHHHHH--HHHhHHH
Q psy8072 377 NEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYN----ENQLAKTQ---AQEFQSH--LSASKNN 447 (584)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~----e~~~lk~q---L~e~r~~--Lq~~R~~ 447 (584)
.+.-|.++. ...++|...+.| +...++.- +.+++.. -...-..
T Consensus 461 --------------------------kdkkiaele--r~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sq 512 (654)
T KOG4809|consen 461 --------------------------KDKKIAELE--RHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQ 512 (654)
T ss_pred --------------------------ccchhhhcC--chhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Confidence 555566555 566666555422 22222211 1222222 0111111
Q ss_pred HHHHHHHHhH--------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccCC---chHHHHHHHHHH
Q psy8072 448 QQRQIEMMET--------EELMV-QKKLRGEMMQLEDALSQIRKEYEM-LRIEFETNLAANEQTG---PINREMRHLITS 514 (584)
Q Consensus 448 ~~~qie~mE~--------~E~~~-q~~l~s~v~qlE~~LarvR~ere~-L~~E~eq~~aa~Eq~g---~i~~Emr~LisS 514 (584)
|..=.+.|.+ ++... -...+.-++..|.-|+++|.+|-. |..-+++..-+ +-+| +-|++.+--
T Consensus 513 hlq~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Lee~lemK~~a-~k~~i~~d~~~~~~~~--- 588 (654)
T KOG4809|consen 513 HLQIEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKKPA-WKPGIHADMWRETHKP--- 588 (654)
T ss_pred HHHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhcCCCHHHHHHHhhh---
Confidence 1111122321 11111 111444566889999999998754 44445554333 5555 334444332
Q ss_pred HHHHHHHHHHHHHHHH-hhhHHHHHHHHHhhhhhcCCCCCCcccccCCCCCccccc
Q psy8072 515 LQNHNKQIKGEVNRYK-RKYKETSAEIQKVRISERSPWPSGYRLHAGGSGFDSRWG 569 (584)
Q Consensus 515 lq~~i~~LksEv~R~K-~k~kea~~e~~~lr~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (584)
+..-+.-++.||.+.+ -+|..++.-.+-.=+.+. ..|-+|..-.|-+|...-|.
T Consensus 589 ~~~~~~k~~~ev~~~~~~k~~~~~ql~~~~~~~~~-~~~ln~~d~~~~~~~~~~~n 643 (654)
T KOG4809|consen 589 SNETVTKGSTEVTLAECLKWLTTFQLVSIGLAAVA-MDVLNTGDVVWLLNVAAEWN 643 (654)
T ss_pred hhhHHHhhHHHHHHHHHHccccHHHHHHHHHHhcc-cCCCCCCcccccccChhhhc
Confidence 3334555666666554 355666554444333322 23333333334444444443
No 88
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.99 E-value=15 Score=42.57 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELS 278 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~ 278 (584)
...-..|...|+.+++.|......+..++..+...+.....++.+...+.+++..++.
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777777666666666666655555555555555555555554444443
No 89
>KOG2129|consensus
Probab=93.94 E-value=12 Score=41.35 Aligned_cols=99 Identities=22% Similarity=0.363 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhhcccCCchH
Q psy8072 444 SKNNQQRQIEMMETEELMVQK---KLRGEMMQLEDALSQ---------------IRKEYEMLRIEFETNLAANEQTGPIN 505 (584)
Q Consensus 444 ~R~~~~~qie~mE~~E~~~q~---~l~s~v~qlE~~Lar---------------vR~ere~L~~E~eq~~aa~Eq~g~i~ 505 (584)
.++.+++.|+..|.++...|. .||.++.+||.+|-| +-.|++-|.+++.|-..+ .+.-
T Consensus 159 ~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~----p~~p 234 (552)
T KOG2129|consen 159 FVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVST----PSLP 234 (552)
T ss_pred HHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC----CCch
Confidence 345566666666666665544 266666666665543 334455555555332221 1222
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHhhhh
Q psy8072 506 REMR-------HLITSLQNHNKQIKGEVNRYKRKY----KETSAEIQKVRIS 546 (584)
Q Consensus 506 ~Emr-------~LisSlq~~i~~LksEv~R~K~k~----kea~~e~~~lr~~ 546 (584)
+.+- .-+.+..-||.-|++||.|||--+ |+++-++..+|++
T Consensus 235 rdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~E 286 (552)
T KOG2129|consen 235 RDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAE 286 (552)
T ss_pred hhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 124567778888999999998544 4444445555555
No 90
>PF13514 AAA_27: AAA domain
Probab=93.91 E-value=22 Score=44.11 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHH
Q psy8072 60 VEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQL 92 (584)
Q Consensus 60 ~~~~LE~rieeLe~rQ~~~D~~L~vVnr~WnQL 92 (584)
.+..++.++.++..+...-++-+..+..-|..+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 590 (1111)
T PF13514_consen 558 RLEEARARLARAQARLAAAEAALAALEAAWAAL 590 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666666544
No 91
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.90 E-value=8.1 Score=41.25 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 441 LSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 441 Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
+.+.++......+.|..+... +...+..+..-+.+++..++.|..++....+.
T Consensus 147 l~gl~~~L~~~~~~L~~D~~~----L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYAK----LDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333322 44555556666666666666666666665554
No 92
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.78 E-value=0.68 Score=45.69 Aligned_cols=119 Identities=23% Similarity=0.280 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhh
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKL 300 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s 300 (584)
...+...+..++..++.+|-..-.+...+..+.+.+...+.++......|.++..++...+.++..|+..+.+--
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~----- 143 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN----- 143 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 345566677888888888888888888888888888999999999999999999999888887766665443211
Q ss_pred hhccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 301 CQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 301 ~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.-++.+.+++..+..-.+.--..+.+|+.||..|++..-..++.
T Consensus 144 --------------------------k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 144 --------------------------KANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12477888888888888888888999999999999888777765
No 93
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.71 E-value=7.1 Score=41.69 Aligned_cols=164 Identities=14% Similarity=0.228 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 355 LQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQA 434 (584)
Q Consensus 355 ~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL 434 (584)
..--.+.+...+|+.+ -+||=|-+.- +.. |+ +.. ...+-.|++....|.+....++.-+
T Consensus 116 ~~Qf~lvK~~aRl~ak--------~~WYeWR~kl--leg-----Lk---~~L---~~~~~~l~~D~~~L~~~~~~l~~~~ 174 (312)
T smart00787 116 DKQFQLVKTFARLEAK--------KMWYEWRMKL--LEG-----LK---EGL---DENLEGLKEDYKLLMKELELLNSIK 174 (312)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHH--HHH-----HH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888877 5789887653 222 11 111 0334556666666666655554444
Q ss_pred HHHHHH---HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHH
Q psy8072 435 QEFQSH---LSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHL 511 (584)
Q Consensus 435 ~e~r~~---Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~L 511 (584)
...+.. |..+-+.......+|+.-+...-..++.++.....++...++..+.++.++.....+ +.+....
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~-------I~~~~~~ 247 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK-------IEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 444443 333333333343444332222223356677777777777777777777777765554 4455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 512 ITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 512 isSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
.+-+...|..++..+...| .=+..||..|++.+..
T Consensus 248 k~e~~~~I~~ae~~~~~~r---~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 248 KSELNTEIAEAEKKLEQCR---GFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHH
Confidence 5555555555555443331 1145677777766544
No 94
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.57 E-value=12 Score=40.14 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=85.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHH-
Q psy8072 219 EANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEK- 297 (584)
Q Consensus 219 ~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~- 297 (584)
.....|...|++|-.++.-.+.-.-.+--+.+.+..-+...+.|.++|+-+|++++.+.-+-+-+.+.|++.|++++.-
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq 178 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQ 178 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777776667777788888889999999999999999999999987777889999999999852
Q ss_pred --hhhhhccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 298 --VKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKL 367 (584)
Q Consensus 298 --~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~L 367 (584)
+++.++ +.+-|...+-.+|-.-+-+|+...++|..|+-.|
T Consensus 179 q~L~~eyQ------------------------------atf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 179 QELNDEYQ------------------------------ATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHhh------------------------------cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 1122223334466666777777777777666553
No 95
>KOG4360|consensus
Probab=93.51 E-value=16 Score=41.29 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHH-HHHHHHH
Q psy8072 348 QELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSA-YSVLYNE 426 (584)
Q Consensus 348 ~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ-~s~l~~e 426 (584)
..++.|++.+..+.++|..|..+ .++|+ .|. -.|-.=.+| |.++.++
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k-------------------------~~llk--~Et-----~~~~~keq~~y~~~~Ke 206 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSK-------------------------AMLLK--TET-----LTYEEKEQQLYGDCVKE 206 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHH-------------------------HHHHH--hhh-----cchhHHHHHHHHHHHHH
Confidence 44667777777777777777766 11133 222 233333222 3456666
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHH
Q psy8072 427 NQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINR 506 (584)
Q Consensus 427 ~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~ 506 (584)
.-..|++..-.+.+|+.--+..-++.| . ..+|.++|.++...+--||.+.|+|-.-+..-+.+.+ .--+
T Consensus 207 lrdtN~q~~s~~eel~~kt~el~~q~E---e-----~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~---ql~a 275 (596)
T KOG4360|consen 207 LRDTNTQARSGQEELQSKTKELSRQQE---E-----NSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQR---QLTA 275 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHH
Confidence 666799988877777765554444321 1 2347777777777777788887777665555444411 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 507 EMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 507 Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
|.+.| ++...-..+. ..||+.|+.+||..
T Consensus 276 E~~El----eDkyAE~m~~-------~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 276 ELEEL----EDKYAECMQM-------LHEAEEELKCLRSC 304 (596)
T ss_pred HHHHH----HHHHHHHHHH-------HHHHHHHHHhhccC
Confidence 33332 3333333222 27899999999865
No 96
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.49 E-value=7.8 Score=37.55 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHH
Q psy8072 346 RLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYN 425 (584)
Q Consensus 346 Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~ 425 (584)
.-.++++++-.+..+..++.+++.. |.. ...+.+ ...--.|-+|+-....+..
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~q----l~~---------------------ke~lge--~L~~iDFeqLkien~~l~~ 56 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQ----LRQ---------------------KEELGE--GLHLIDFEQLKIENQQLNE 56 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------------------HHHhcC--cccHHHHHHHHHHHHHHHH
Confidence 3457888888888888888888877 222 232222 2344678888888888877
Q ss_pred HHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 426 ENQLAKTQAQEFQSH----LSASKNNQQRQIEMMETEELMV----QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 426 e~~~lk~qL~e~r~~----Lq~~R~~~~~qie~mE~~E~~~----q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
.+..=+.+|-..+.. ++..- .+....- +-..+... -......+..++++++++..+++.++.....-...
T Consensus 57 kIeERn~eL~~Lk~~~~~~v~~L~-h~keKl~-~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 57 KIEERNKELLKLKKKIGKTVQILT-HVKEKLH-FLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777766666655544 11111 1111111 11222222 22266677889999999999999999998886654
Q ss_pred cccCC-chH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8072 498 NEQTG-PIN-REMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQ 541 (584)
Q Consensus 498 ~Eq~g-~i~-~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~ 541 (584)
...-+ |.+ ..|-.. .+.+..|+..|..|+++++.+...|.
T Consensus 135 ~~~~~~P~ll~Dy~~~----~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 135 GGLLGVPALLRDYDKT----KEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred cCCCCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22222 544 345443 45677788888899888888876553
No 97
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.40 E-value=6 Score=36.78 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy8072 418 SAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLE---DALSQIRKEYEMLRIEFETN 494 (584)
Q Consensus 418 sQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE---~~LarvR~ere~L~~E~eq~ 494 (584)
+++..+..++..+......+...++..|.-...+.+.+.. .+.+++.+|...- ..|+.+|.+++.++.++.+.
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~----Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l 78 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQE----AQQKYERELVKHAEDIKELQQLREELQELQQEINEL 78 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666666554444322211 1333444444222 22334444444444444444
Q ss_pred hhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy8072 495 LAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAE 539 (584)
Q Consensus 495 ~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e 539 (584)
... .-.....+...=.+...+=.+|+.++.-++.++.|...-
T Consensus 79 ~~~---~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 79 KAE---AESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 223333344444555566666777777776666665543
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.09 E-value=17 Score=40.35 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=25.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 458 EELMVQK-KLRGEMMQLEDALSQIRKEYEMLRIEFETN 494 (584)
Q Consensus 458 ~E~~~q~-~l~s~v~qlE~~LarvR~ere~L~~E~eq~ 494 (584)
.|+.... .|+..|+.+|...++.|..++--++.-..+
T Consensus 227 ~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~~~ 264 (420)
T COG4942 227 EELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARA 264 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 388888888888888888887665555544
No 99
>PRK09039 hypothetical protein; Validated
Probab=92.99 E-value=7 Score=42.19 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8072 343 ANNRLQELDKLHLQHREAL 361 (584)
Q Consensus 343 A~~Rl~ELe~L~~e~~~l~ 361 (584)
.+.+-.||.+|+.+...|.
T Consensus 48 i~~~~~eL~~L~~qIa~L~ 66 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELA 66 (343)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3456666777766665543
No 100
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.96 E-value=7.5 Score=41.54 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 441 LSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 441 Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
+++.+....+.++.|..+... +...+..+..-+-.++.-++.|..++.+..+.
T Consensus 142 legLk~~L~~~~~~l~~D~~~----L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKL----LMKELELLNSIKPKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555445443332 44455556666666666666666666665554
No 101
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.94 E-value=20 Score=40.81 Aligned_cols=158 Identities=22% Similarity=0.212 Sum_probs=79.5
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIV 408 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~ 408 (584)
+..+..+|++++.-..+-..|+..|+.....|..++...|.+ +.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e----------------------------l~-------- 326 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE----------------------------LE-------- 326 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HH--------
Confidence 445555555555555555555555555555555555555544 22
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLR 488 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~ 488 (584)
.++.........+..|+.+|...+..|.+.+..-.+ .+..+..+-..|.++..+.+..+
T Consensus 327 ------~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~---------------~k~~~~~l~~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 327 ------RLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK---------------AKEAMSELPKALQQLSSEAEEAK 385 (522)
T ss_pred ------HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc---------------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445566666666666555542211 12233333444444444444444
Q ss_pred HHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 489 IEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 489 ~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
.+.+.......-.+.-+...+.-+.+.+.++....-++.--|---.-|-.+|..|
T Consensus 386 ~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 386 KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333321112234555566677777888877777777754444444444444
No 102
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.89 E-value=25 Score=41.62 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=21.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 256 VNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 256 ~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
......-..-|..+++++..++..++.++
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l 217 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEV 217 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888888888833
No 103
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.65 E-value=23 Score=40.71 Aligned_cols=228 Identities=18% Similarity=0.303 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhc-cccCCCCCCCCCCCCCCCccccchhhhHHHHhHH
Q psy8072 259 KETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQ-MHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLE 337 (584)
Q Consensus 259 ~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~-~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~ele 337 (584)
++.-+..++..+..+...++++-.-+.++...+-..++.+..|+. +...+ -..+ ...+. ..+..+...++
T Consensus 192 A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~g-----y~l~---~~~i~-~~i~~i~~~l~ 262 (560)
T PF06160_consen 192 AREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEG-----YYLE---HLDIE-EEIEQIEEQLE 262 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-----CCCC---CCCHH-HHHHHHHHHHH
Confidence 334444455555555555555554444555444444555555543 11111 1110 00111 23666776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHH
Q psy8072 338 EAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQ 417 (584)
Q Consensus 338 E~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~Lq 417 (584)
++...-. . -+|+.....+..+..++..|-.. +. -|+ ..++.+.
T Consensus 263 ~~~~~L~-~-l~l~~~~~~~~~i~~~Id~lYd~----------------------------le---~E~----~Ak~~V~ 305 (560)
T PF06160_consen 263 EALALLK-N-LELDEVEEENEEIEERIDQLYDI----------------------------LE---KEV----EAKKYVE 305 (560)
T ss_pred HHHHHHH-c-CCHHHHHHHHHHHHHHHHHHHHH----------------------------HH---HHH----HHHHHHH
Confidence 6666552 2 25777888888888888877766 33 122 5566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 418 SAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 418 sQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
.....+..-+.+++.+.......+...+.+|.-. ..|......+. ..+..+.+.++.+...++....+
T Consensus 306 ~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~-----~~e~~~~~~l~-------~~l~~l~~~~~~~~~~i~~~~~~ 373 (560)
T PF06160_consen 306 KNLKELYEYLEHAKEQNKELKEELERVSQSYTLN-----HNELEIVRELE-------KQLKELEKRYEDLEERIEEQQVP 373 (560)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----chHHHHHHHHH-------HHHHHHHHHHHHHHHHHHcCCcC
Confidence 7777776667777766666666666666555332 33443333333 33444444555544444433322
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8072 498 NEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVR 544 (584)
Q Consensus 498 ~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr 544 (584)
--+-.....++..-++.+.+.-..+...|..++...++|...+..++
T Consensus 374 yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~ 420 (560)
T PF06160_consen 374 YSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLK 420 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001222333333333444444444444444444444444444433
No 104
>KOG0964|consensus
Probab=92.62 E-value=31 Score=42.02 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 226 TENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 226 ~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.+..+|.......-.+...+...+..-+|.......++.+|+..|.-+..+.+.+..
T Consensus 237 ~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a 293 (1200)
T KOG0964|consen 237 GELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKA 293 (1200)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555555555554444444
No 105
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.57 E-value=17 Score=39.02 Aligned_cols=178 Identities=21% Similarity=0.219 Sum_probs=89.5
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChh-hh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPES-VI 407 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee-~I 407 (584)
++.-..+.++.+-+| +.|++.++.+.+....+... .++++| ....|.. -.
T Consensus 18 Le~cq~ErDqyKlMA-------EqLqer~q~LKkk~~el~~~-~~~~~d---------------------~~~~~~~~~~ 68 (319)
T PF09789_consen 18 LEKCQSERDQYKLMA-------EQLQERYQALKKKYRELIQE-AAGFGD---------------------PSIPPEKENK 68 (319)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhh-hcccCC---------------------ccCCcccchh
Confidence 344445556665553 45667777777777777755 122333 1111221 11
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-H---------hHHHHHH-HHHHHHHHHHHHHH
Q psy8072 408 VETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEM-M---------ETEELMV-QKKLRGEMMQLEDA 476 (584)
Q Consensus 408 ~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~-m---------E~~E~~~-q~~l~s~v~qlE~~ 476 (584)
.=+......+.+...|-.++..|+..+.+++......|....++.-. + |-...-. -.+++.++.+|+-+
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d 148 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERD 148 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233355555555555556666666666655556555443211 1 0111111 12266677777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhhhHHHHH
Q psy8072 477 LSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITS-----------------LQNHNKQIKGEVNRYKRKYKETSA 538 (584)
Q Consensus 477 LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisS-----------------lq~~i~~LksEv~R~K~k~kea~~ 538 (584)
+.-+-.|.+++.+|-..=+-. +-.-|.|+-++++. |+.++.+++.|+.=.|..+-..-+
T Consensus 149 ~qs~lDEkeEl~~ERD~yk~K---~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 149 LQSLLDEKEELVTERDAYKCK---AHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666554332222 22445555555443 566666666666666544333333
No 106
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.44 E-value=42 Score=43.16 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=19.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
++|...++...+-...-..++.++.++...+...++.+...
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555555544444444
No 107
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.38 E-value=18 Score=41.38 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 518 HNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 518 ~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
++..|+.++..++.++.+.+.+++..|..
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544
No 108
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.34 E-value=13 Score=37.10 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 341 ELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 341 ~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.+-+.|+..+.+|+.++..+..+++.+..+
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~E 34 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKE 34 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666665
No 109
>PRK01156 chromosome segregation protein; Provisional
Probab=92.30 E-value=32 Score=41.48 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy8072 218 REANIEIQTENRNLTEQNTKLHAKYHSISLKISEL 252 (584)
Q Consensus 218 ~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l 252 (584)
...-..+..+...+...+..|..+-+.+..++..+
T Consensus 468 ~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~ 502 (895)
T PRK01156 468 NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDL 502 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555444444433
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.28 E-value=30 Score=41.06 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~~a 496 (584)
+.+|.-++..+.+--.|..+|..++.+.+|
T Consensus 628 krq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 628 KRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444454555556666666666665
No 111
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.28 E-value=0.56 Score=55.12 Aligned_cols=127 Identities=19% Similarity=0.203 Sum_probs=59.1
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSA-----SKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKE 483 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~-----~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~e 483 (584)
.+..+..|+..+..|..+...|..++......|.. ..+.-.-+|=++...=+ ...+-+ ...+|..+++|
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~-----~~~~~~-k~~~l~~L~~E 574 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPT-----SKAEQI-KKSTLEALQAE 574 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HH-----HHHHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcH-----HHHHHH-HHHHHHHHHHH
Confidence 34566677777777766666666666555544432 00100001100101001 011111 23456677778
Q ss_pred HHHHHHHHHHHhhhcccCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8072 484 YEMLRIEFETNLAANEQTGPI-----NREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQ 541 (584)
Q Consensus 484 re~L~~E~eq~~aa~Eq~g~i-----~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~ 541 (584)
.+.|+..+...-..+.++.+. ..-+..-+..|+..+..++.-..|||.=|.....+.-
T Consensus 575 n~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr 637 (722)
T PF05557_consen 575 NEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFR 637 (722)
T ss_dssp HHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777664332222222211 1122223556677777777777777766665555543
No 112
>KOG0946|consensus
Probab=92.22 E-value=31 Score=41.17 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=51.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 215 EAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 215 ~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
+.+....-.++..+..+...+..++.+.++|..+...|..++.-..+++..|+.+++.+..+|.+++.
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~ 720 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISS 720 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34444555677777778888888888888888888888888888888888888888887777776665
No 113
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.14 E-value=8.7 Score=36.20 Aligned_cols=108 Identities=12% Similarity=0.163 Sum_probs=83.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 166 LANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSI 245 (584)
Q Consensus 166 L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~l 245 (584)
....+..+-.+|..|+...++-....+.+...+..-. .+ ...+......|...+..++..+..++.++..+
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~--------~d-~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLR--------SD-IERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677778888888888888888888877742 22 34567778888888999999999999999999
Q ss_pred HHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 246 SLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 246 s~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..++..+...+.....+++.++..+......+.--.|
T Consensus 100 ~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 100 QKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888888888888877666555444
No 114
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.03 E-value=0.044 Score=65.50 Aligned_cols=74 Identities=26% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHH
Q psy8072 218 REANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHL 291 (584)
Q Consensus 218 ~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~l 291 (584)
.+........+..+...+..|+.++-.....+..+.....++++++.+|..+|++....+..+.+....|...|
T Consensus 172 ~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qL 245 (859)
T PF01576_consen 172 QKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQL 245 (859)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555667888888888999999999999888888888888888888888888887777766444444433
No 115
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.00 E-value=11 Score=38.67 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
++.++..+...+.+++.+-+..+.++.+.+..++.......-...+..+..+....+..++...+.++......+..-|.
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555554444333332222233334444455555555555555555555555554444
Q ss_pred h
Q psy8072 546 S 546 (584)
Q Consensus 546 ~ 546 (584)
.
T Consensus 148 ~ 148 (302)
T PF10186_consen 148 Q 148 (302)
T ss_pred H
Confidence 3
No 116
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.95 E-value=45 Score=42.48 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC-CCCCCcc
Q psy8072 512 ITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS-PWPSGYR 556 (584)
Q Consensus 512 isSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s-~~~~~~~ 556 (584)
...+......++.+...+..+.++...++..+...-.. |+|...+
T Consensus 546 ~~~l~~~~~~l~~~~~~l~e~~~el~~e~~~~e~~~~~~P~~~~~R 591 (1353)
T TIGR02680 546 ADELTRERAALRLAEEVLEEERDALRTERERLEQGTDRDPPPPHTR 591 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchHHH
Confidence 44455555556666666666666666666666555444 4555554
No 117
>KOG0933|consensus
Probab=91.77 E-value=39 Score=41.31 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=46.1
Q ss_pred HHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8072 41 KVLKFQNKK-LAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRFD 104 (584)
Q Consensus 41 ~vLqfQn~k-L~Q~LE~qr~~~~~LE~rieeLe~rQ~~~D~~L~vVnr~WnQL~ddi~lL~~r~~ 104 (584)
.+.++|.-+ ..-+++..+.+.++||..|+.|+..+..|++ ++.=|+-..-++.++..|..
T Consensus 672 ~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~----l~~ql~l~~~~l~l~~~r~~ 732 (1174)
T KOG0933|consen 672 LLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRD----LKQQLELKLHELALLEKRLE 732 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 688888855 6667788888999999999999988877654 56667666777777766544
No 118
>KOG4673|consensus
Probab=91.74 E-value=32 Score=40.35 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy8072 160 EELDEKLANRVQVSKRAVAKIIQAF 184 (584)
Q Consensus 160 ~e~e~~L~~R~~~tk~~v~~lv~~~ 184 (584)
+..|..|..|...+..++...|..-
T Consensus 661 ereE~~l~~rL~dSQtllr~~v~~e 685 (961)
T KOG4673|consen 661 EREERSLNERLSDSQTLLRINVLEE 685 (961)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5668889999988888877666544
No 119
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.72 E-value=29 Score=39.87 Aligned_cols=166 Identities=13% Similarity=0.181 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHH
Q psy8072 349 ELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQ 428 (584)
Q Consensus 349 ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~ 428 (584)
-|..++..+..|..+++.++.. |.| ++.. ...++.+..|++.+.+...
T Consensus 314 ~l~~~~~~~~~l~~e~~~v~~s------------------Y~L-----------~~~e---~~~~~~l~~~l~~l~~~~~ 361 (560)
T PF06160_consen 314 YLEHAKEQNKELKEELERVSQS------------------YTL-----------NHNE---LEIVRELEKQLKELEKRYE 361 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------------------cCC-----------CchH---HHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888877 333 2211 2567888888888877777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--chHH
Q psy8072 429 LAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTG--PINR 506 (584)
Q Consensus 429 ~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g--~i~~ 506 (584)
.+...+..-..-.......+..-.+.++.-+.. |..+...+..|..+-.+.|..-..+..++...+..=+... .+-.
T Consensus 362 ~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~-q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~ 440 (560)
T PF06160_consen 362 DLEERIEEQQVPYSEIQEELEEIEEQLEEIEEE-QEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPE 440 (560)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 776666544443444443333333333222221 5557778888888888888888888888888887655555 3447
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHhhhhh
Q psy8072 507 EMRHLITSLQNHNKQIKGEVNRYK-------RKYKETSAEIQKVRISE 547 (584)
Q Consensus 507 Emr~LisSlq~~i~~LksEv~R~K-------~k~kea~~e~~~lr~~~ 547 (584)
++..+...-.++|..+..++.+.+ +.+.+|..++..|...+
T Consensus 441 ~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t 488 (560)
T PF06160_consen 441 DYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT 488 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888777554 67777777777776553
No 120
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.60 E-value=0.053 Score=64.86 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQT--------------GPINREMRHLITSLQNHNKQIKGEVNRYKR 531 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~--------------g~i~~Emr~LisSlq~~i~~LksEv~R~K~ 531 (584)
+...+..++-.-.++-.+.+++..+++...+.+.+- ..-..++..-..+.+.+...+.+++.+++.
T Consensus 340 ~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~ 419 (859)
T PF01576_consen 340 ANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKN 419 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 556666777777777777777777777655432111 123344555667888889999999999999
Q ss_pred hhHHHHHHHHHhhhhhcC
Q psy8072 532 KYKETSAEIQKVRISERS 549 (584)
Q Consensus 532 k~kea~~e~~~lr~~~~s 549 (584)
.+.++...+..|+.....
T Consensus 420 ~lee~~e~~e~lere~k~ 437 (859)
T PF01576_consen 420 ELEELQEQLEELERENKQ 437 (859)
T ss_dssp ------------------
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 998888888888776555
No 121
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.51 E-value=2.6 Score=43.53 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q psy8072 264 AELRNQIDDLQYELSKVQSRNDKLENHLLEAT 295 (584)
Q Consensus 264 ~eL~~qLee~~~eL~k~~rr~~KL~~~la~al 295 (584)
++|+.+++.+..++++.+.-+.||+..|+.+.
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888888888888888889988887655
No 122
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.50 E-value=13 Score=35.29 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKET 536 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea 536 (584)
+..+|..||.+|.+.-.......-.+.++-.+ ..+|-.-+.+|..+...++.-+.-+-.+|+++
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~-------ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVK-------AEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 66677777777777776666666666665554 23333344444445555555444444455544
No 123
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.41 E-value=23 Score=41.93 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 344 NNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 344 ~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.---.+|.+++++......+++.++.+
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456777888888888888888877
No 124
>PF13514 AAA_27: AAA domain
Probab=91.41 E-value=46 Score=41.43 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8072 472 QLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMR-------HLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVR 544 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr-------~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr 544 (584)
+++..+...+.+...+...+...+++--.-......+. .-|.++..+...+..++.+++.++.++..++..++
T Consensus 407 d~~~~~~~~~~~~~~~~~~l~~~l~~L~~w~~~~~~l~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1111)
T PF13514_consen 407 DLEARLQEAEQALEAAERRLAAALAALGPWSGDLDALAALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEELARLE 486 (1111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777778888888888776221112233332 33777777888888888888888888888888877
Q ss_pred hhhcC
Q psy8072 545 ISERS 549 (584)
Q Consensus 545 ~~~~s 549 (584)
++...
T Consensus 487 ~~~~~ 491 (1111)
T PF13514_consen 487 ARLRR 491 (1111)
T ss_pred HHHHH
Confidence 66443
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.35 E-value=21 Score=37.49 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
.-..|..||..|-..|+.|.-.-..++-++ ...+..+.-|+++|......+++.+-.+-++
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdl-------q~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDL-------QVKESQVNFLEGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999998888888888888 4455555555555555555555444433333
No 126
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.26 E-value=1.6 Score=42.01 Aligned_cols=64 Identities=22% Similarity=0.438 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 465 KLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKY 533 (584)
Q Consensus 465 ~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ 533 (584)
.++.++.+|..++..+..+.-.|++++....+. |.+.||+..|..|..++..|++.+..++...
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSE-----PTNEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 377789999999999999999999999886654 9999999999999999999999999997543
No 127
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.06 E-value=25 Score=37.78 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 472 QLEDALSQIRKEYEMLRIEFETNL 495 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~eq~~ 495 (584)
..+.++.+.+.++..++.++.+..
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~ 223 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLK 223 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 128
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.97 E-value=18 Score=36.09 Aligned_cols=85 Identities=12% Similarity=0.138 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 463 QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPI-------NREMRHLITSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 463 q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i-------~~Emr~LisSlq~~i~~LksEv~R~K~k~ke 535 (584)
++.+-++|..|....-++-.+++-+.-..++.-..+..-... +....++++..-.+|..|+.-|..|+---.+
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~tee 176 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444777888888888888888888887777753321111123 3444555667788899999999999888888
Q ss_pred HHHHHHHhhhhh
Q psy8072 536 TSAEIQKVRISE 547 (584)
Q Consensus 536 a~~e~~~lr~~~ 547 (584)
...|++.|-...
T Consensus 177 LR~e~s~LEeql 188 (193)
T PF14662_consen 177 LRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHH
Confidence 888888886554
No 129
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.96 E-value=51 Score=41.16 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcccCC-----chHHHHHHHHHH-----HHHHHHHH------------
Q psy8072 468 GEMMQLEDALSQIRKEYEMLRIEFETNL---AANEQTG-----PINREMRHLITS-----LQNHNKQI------------ 522 (584)
Q Consensus 468 s~v~qlE~~LarvR~ere~L~~E~eq~~---aa~Eq~g-----~i~~Emr~LisS-----lq~~i~~L------------ 522 (584)
.+++.|+-...|+....+.|+.-+++.+ ..|..-+ ....+++.|++. +.+...++
T Consensus 404 ~~l~~L~~~q~QL~~~~~~l~~~L~~~lFWv~s~~Pi~l~w~~~~~~~l~~l~~~~~~~~l~~~l~~~~~~~~~~~~l~~ 483 (1109)
T PRK10929 404 LELTKLKVANSQLEDALKEVNEATHRYLFWVADVSPISLSYPLEIAQDLRRLLSLDTFSQLGKASVMMLTSKETLLPLFG 483 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhhHHHHHH
Confidence 3555777777888888888887777765 2211111 345555555443 22222111
Q ss_pred --------HHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 523 --------KGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 523 --------ksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
-.--.+|+..+.....++.+++.+...
T Consensus 484 ~lll~~~~~~~r~~~~~~l~~~~~~vg~v~~D~~~ 518 (1109)
T PRK10929 484 ALLLVGFSISSRRHYHAFLERSSSRVGKVTQDHFS 518 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 111266777777888889999998776
No 130
>KOG2129|consensus
Probab=90.87 E-value=30 Score=38.37 Aligned_cols=172 Identities=22% Similarity=0.243 Sum_probs=93.0
Q ss_pred hhhhhhhchHHHHHHHHHHHHHH-HHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCccccc--hh
Q psy8072 252 LQDAVNGKETEAAELRNQIDDLQ-YELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQ--KK 328 (584)
Q Consensus 252 l~d~~~~~ese~~eL~~qLee~~-~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~--~k 328 (584)
|-+++..++.+.-.|+.-++-.+ +-..|..+++.||++.. +-+ ..+... ..
T Consensus 134 Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t---~~k-----------------------q~~leQLRre 187 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKT---LLK-----------------------QNTLEQLRRE 187 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHh-----------------------hhhHHHHHHH
Confidence 34455666666666666665555 55556666666666411 100 000000 00
Q ss_pred hhHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhh
Q psy8072 329 LDDLQKDLE-EAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVI 407 (584)
Q Consensus 329 ~eeL~~ele-E~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I 407 (584)
.-+|...+| |..+|.++=+.-+++|.+|...|++.+..= ++.|.+. +-+.++|+-
T Consensus 188 ~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqp-----------------vs~p~~p-----rdia~~~~~-- 243 (552)
T KOG2129|consen 188 AVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQP-----------------VSTPSLP-----RDIAKIPDV-- 243 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------------ccCCCch-----hhhhcCccc--
Confidence 123333333 566788888899999999998888877221 2223332 335555442
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8072 408 VETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLE 474 (584)
Q Consensus 408 ~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE 474 (584)
.-+.--.++-....|.+|+..++++|..++...+-.--.|+.....|+.+-...|.+|..+|...|
T Consensus 244 -~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRe 309 (552)
T KOG2129|consen 244 -HGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERRE 309 (552)
T ss_pred -cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334555777788888888888888887665543332222222323344433333555555554433
No 131
>PRK01156 chromosome segregation protein; Provisional
Probab=90.85 E-value=44 Score=40.29 Aligned_cols=76 Identities=11% Similarity=0.285 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccC----C-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAAN-----EQT----G-PI-NREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~-----Eq~----g-~i-~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
+...+..+...+..+..+...++..+++...+- ... | |+ -....++++....++..++.++..++.+.+
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~ 493 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVK 493 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555444433221 111 0 11 333445566555555555555555554444
Q ss_pred HHHHHHH
Q psy8072 535 ETSAEIQ 541 (584)
Q Consensus 535 ea~~e~~ 541 (584)
+.-.++.
T Consensus 494 ~l~~~~~ 500 (895)
T PRK01156 494 DIDEKIV 500 (895)
T ss_pred HHHHHHH
Confidence 4444433
No 132
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=90.79 E-value=31 Score=38.39 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhcC----CCCCCcc
Q psy8072 520 KQIKGEVNRYKRKYKETSAEIQKVRISERS----PWPSGYR 556 (584)
Q Consensus 520 ~~LksEv~R~K~k~kea~~e~~~lr~~~~s----~~~~~~~ 556 (584)
.....++...+..+..+.+.+...+..... .|-+|+-
T Consensus 287 ~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V 327 (457)
T TIGR01000 287 AKVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVL 327 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeEE
Confidence 344555555555556666666555555433 3556654
No 133
>KOG4687|consensus
Probab=90.64 E-value=25 Score=37.04 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..++..+..+.+.||.|+-.-+.-+..+...+.+.+.+...+.-..|.++..|+..++
T Consensus 8 ga~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealer 65 (389)
T KOG4687|consen 8 GAEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALER 65 (389)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 3457778888999999999999999999999999999999998888888888888877
No 134
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.39 E-value=8.5 Score=39.68 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=31.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHA-------KYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~-------khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.|...-.++..++.+|......... +...+..++..+.........+..+|+.++..++.++.++..
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666555544444 444455555455555555555555555555555555555544
No 135
>KOG4673|consensus
Probab=90.15 E-value=45 Score=39.23 Aligned_cols=118 Identities=21% Similarity=0.302 Sum_probs=77.6
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHH
Q psy8072 157 WDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNT 236 (584)
Q Consensus 157 ~d~~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~ 236 (584)
.+.+++|..+++.+..-..-+.+.-+-+...+.+.+.|-....... .+.| .+-.+|+.+|.-= -+
T Consensus 512 ~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~q------at~d------~a~~Dlqk~nrlk---Qd 576 (961)
T KOG4673|consen 512 RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQ------ATND------EARSDLQKENRLK---QD 576 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH------Hhhh------hhhhhHHHHhhhh---hh
Confidence 4678888888887777666666666666666655555544433321 0111 1112333333322 24
Q ss_pred HHHHHHHHhHHHHHHhhhhhhhchHHHH----HHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 237 KLHAKYHSISLKISELQDAVNGKETEAA----ELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 237 ~L~~khk~ls~e~~~l~d~~~~~ese~~----eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
.+.+.|-.|..++..|+..+.+.+.... .+++++++++-+|..+++|.+-|-+
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888888887654 4889999999999999998877765
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.10 E-value=2.7 Score=42.25 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
++.++.++.+.|+.++.+.+....++.+.++. ....++.|.++|..|+.|+...+.+..++.+++..++.
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~----------~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ----------SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555554443 34446668888888888888888777777777777776
Q ss_pred hhcC
Q psy8072 546 SERS 549 (584)
Q Consensus 546 ~~~s 549 (584)
+...
T Consensus 168 ~~~~ 171 (206)
T PRK10884 168 TIIM 171 (206)
T ss_pred HHHH
Confidence 6543
No 137
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=89.89 E-value=47 Score=39.11 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8072 171 QVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANI-EIQTENRNLTEQNTKLHAKYHSISLKI 249 (584)
Q Consensus 171 ~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~-~L~~E~~~Lq~~~~~L~~khk~ls~e~ 249 (584)
..-+.-|+.|-.-+....+...-|...|.+.. +.-.+..... .|..+....+.....++.+.......+
T Consensus 334 ~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~----------AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~L 403 (739)
T PF07111_consen 334 KQLRGQVASLQEEVASQQQEQAILQHSLQDKA----------AELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQL 403 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555545444444444555554432 2222222333 455555566666665555555555555
Q ss_pred HHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhh
Q psy8072 250 SELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKL 300 (584)
Q Consensus 250 ~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s 300 (584)
..+.+.+...+.- |....++++.+-.|+..|..+++=|+.+|..
T Consensus 404 k~v~eav~S~q~~-------L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~t 447 (739)
T PF07111_consen 404 KLVSEAVSSSQQW-------LESQMAKVEQALARLPSLSNRLSYAVRRVHT 447 (739)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHhcccch
Confidence 5555555544442 4444555555555666666666666655433
No 138
>KOG0612|consensus
Probab=89.84 E-value=62 Score=40.39 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=41.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHH
Q psy8072 213 LDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQY 275 (584)
Q Consensus 213 ~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~ 275 (584)
....++..-..|..++..++......-...+.++..+..++..+..+++.+..+..++..++.
T Consensus 589 ~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 589 KLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555677778888888877777777777777766666666666655555555555444
No 139
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.83 E-value=28 Score=36.38 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=87.8
Q ss_pred HHHHhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHH
Q psy8072 149 SFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTEN 228 (584)
Q Consensus 149 ~FL~~Lss~d~~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~ 228 (584)
.||..+ +..+-.+.+..=.+|-.-|..+++.++....-.+.|-...+.. -.++...|++.........
T Consensus 16 ~~L~~~----N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~--------l~~ak~eLqe~eek~e~~l 83 (258)
T PF15397_consen 16 DFLTKL----NKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQ--------LQQAKAELQEWEEKEESKL 83 (258)
T ss_pred HHHHHh----hHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHH--------HHHHHHHHHHHHHHHHhHH
Confidence 455544 4566667777777788888888887777665444444433332 2456777888889999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHh---hh--------hhhhchHHHHHHHHHHHHHHHHHHHHHhHH-HhhHHHHHHHHH
Q psy8072 229 RNLTEQNTKLHAKYHSISLKISEL---QD--------AVNGKETEAAELRNQIDDLQYELSKVQSRN-DKLENHLLEATE 296 (584)
Q Consensus 229 ~~Lq~~~~~L~~khk~ls~e~~~l---~d--------~~~~~ese~~eL~~qLee~~~eL~k~~rr~-~KL~~~la~ale 296 (584)
..|+.+++.|.++.+....+++.| .| .++.+...++.++.+-.+=..+|.+..+.+ .+|..+.-...+
T Consensus 84 ~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~ 163 (258)
T PF15397_consen 84 SKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKE 163 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887654 33 344444455555444444445555555433 355554444444
Q ss_pred Hh
Q psy8072 297 KV 298 (584)
Q Consensus 297 ~~ 298 (584)
++
T Consensus 164 ~i 165 (258)
T PF15397_consen 164 EI 165 (258)
T ss_pred HH
Confidence 43
No 140
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=89.74 E-value=11 Score=36.44 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=89.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC----CCCCCCCCchHHHHHHHhHHHHHHHHHHHHHH
Q psy8072 160 EELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELN----NSNGDPIPSLDEAVREANIEIQTENRNLTEQN 235 (584)
Q Consensus 160 ~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~----~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~ 235 (584)
.-.+..|+.+.......+......++.....++-....+..-.+ --.|+++-.+ .+...++...
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i------------~~~~~~~~~r 81 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSI------------DEYLALRRYR 81 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccH------------HHHHHHHHHH
Confidence 45566777777777777777777777776666555555544221 0001111122 3367788888
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q psy8072 236 TKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLL 292 (584)
Q Consensus 236 ~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la 292 (584)
+.|..+|..+..++..+++.+.....++......|-...+.++....|+++|..++-
T Consensus 82 ~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~e 138 (158)
T PF09486_consen 82 DVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888876543
No 141
>KOG1029|consensus
Probab=89.44 E-value=54 Score=39.13 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
.+...++.|+.++..|+.||+.++.++.-.+-.+....++|..+..+.|-...++.....|+.-+
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 36667888999999999999999999999999999999999999888777666666555555333
No 142
>KOG0804|consensus
Probab=89.20 E-value=4.4 Score=44.93 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy8072 464 KKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTG-----PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSA 538 (584)
Q Consensus 464 ~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g-----~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~ 538 (584)
+.++..+.|+...+.+|-++...++ |+.+.+.+|-++- ....-.+..+.+.+..|.-|+.||+-+ +-+=|++.
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~-E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl-mf~le~qq 455 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEER-EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL-MFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-heehhhhh
Confidence 3378889999999999999999888 8888888755552 455556667777888888888888765 44456666
Q ss_pred HHH
Q psy8072 539 EIQ 541 (584)
Q Consensus 539 e~~ 541 (584)
++.
T Consensus 456 klk 458 (493)
T KOG0804|consen 456 KLK 458 (493)
T ss_pred hhh
Confidence 664
No 143
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.96 E-value=26 Score=38.24 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 412 EYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEMLRIE 490 (584)
Q Consensus 412 ~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~E 490 (584)
.+..+...++..-+|...+|.|++.....+.+.+. + ..++.. .+..-.-|..+-.+|++|-.+.+....+
T Consensus 246 l~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~----~-----ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 246 LQQDISKTLEKIESREKYINNQLEPLIQEYRSAQD----E-----LSEVQEKYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----H-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666655555444443 1 112211 2334557778888999999999999999
Q ss_pred HHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 491 FETNLAANEQTGPINREMRHLITSLQNHNKQIKGE 525 (584)
Q Consensus 491 ~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksE 525 (584)
++++-+..-+ |.-.-.+|.-+..|.++|.+|.-.
T Consensus 317 meerg~~mtD-~sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 317 MEERGSSMTD-GSPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHhcCCCCC-CCHHHHHHHHHHHHHHHHHHhhhh
Confidence 9998765333 355567999999999999988643
No 144
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=88.71 E-value=57 Score=38.47 Aligned_cols=60 Identities=8% Similarity=0.201 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHH----hhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 483 EYEMLRIEFETN----LAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 483 ere~L~~E~eq~----~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
....|..++..+ ...+.+++.....++.+..+...=..-|.+++..+ ..|.+.|.+|-.+
T Consensus 374 ~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~v----e~a~aRL~sL~~R 437 (739)
T PF07111_consen 374 GSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKV----EQALARLPSLSNR 437 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHH
Confidence 333444444433 33344555777788888777666666677777776 6666666654444
No 145
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.52 E-value=37 Score=36.09 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHL 511 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~L 511 (584)
+--+|+.+=...-.+|++.|++..+|.+.... ..+...+|+.+
T Consensus 191 ~he~m~k~~~~~De~Rkeade~he~~ve~~~~---~~e~~ee~~~~ 233 (294)
T COG1340 191 YHEEMIKLFEEADELRKEADELHEEFVELSKK---IDELHEEFRNL 233 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHH
Confidence 45567777777778888999999988887775 33444444443
No 146
>KOG0979|consensus
Probab=88.45 E-value=70 Score=39.18 Aligned_cols=128 Identities=17% Similarity=0.251 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhcc
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQM 304 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~ 304 (584)
..+..++.+.|+.+.-...+...+..+..+++...+.++.++.++++.+.-.-++-++++.+...-+..+...+..
T Consensus 282 e~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~---- 357 (1072)
T KOG0979|consen 282 ESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE---- 357 (1072)
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 3344555555555555555555555555555555555555555555555555444444444433323222211110
Q ss_pred ccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 305 HTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 305 ~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
++.|.++. .+++++..++.+.+.=...+..+..+..........++...+.+
T Consensus 358 ---------~~~~e~~~-----~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~~~kr~ 409 (1072)
T KOG0979|consen 358 ---------TEDPENPV-----EEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLENKKRK 409 (1072)
T ss_pred ---------cCCccccc-----hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 11111221 24556666666666655556656555555555555555555544
No 147
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.38 E-value=43 Score=36.69 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=21.6
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
.....-..-|..+++++..++..++.++.++
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~f 197 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAY 197 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556778888888888888888844443
No 148
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.26 E-value=23 Score=36.56 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 506 REMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 506 ~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
++.-..|..+......-..|+.+|+.++.+|+.....-+..
T Consensus 85 ~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 85 REAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555554444433
No 149
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.22 E-value=41 Score=36.15 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEF 491 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~ 491 (584)
++...+..+.+.+.+.+.++.++
T Consensus 211 ~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 211 ELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444433333333333
No 150
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.39 E-value=88 Score=39.14 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=20.1
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 253 QDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 253 ~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
-++......+.+.++..++++-.++.++++
T Consensus 57 l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~ 86 (1109)
T PRK10929 57 LEERKGSLERAKQYQQVIDNFPKLSAELRQ 86 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344456666777777777777777777666
No 151
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.36 E-value=33 Score=34.19 Aligned_cols=119 Identities=19% Similarity=0.269 Sum_probs=75.9
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhh
Q psy8072 327 KKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESV 406 (584)
Q Consensus 327 ~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~ 406 (584)
+.+.+++..+.+++.-...-...-..+..+...+..++..+... ..
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~----------------------------A~------ 75 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ----------------------------AE------ 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HH------
Confidence 44688888888888877777777777777777777777777666 21
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 407 IVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEM 486 (584)
Q Consensus 407 I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~ 486 (584)
..|+..-.+|......-+..++.....++........+ ..+++..+.+++..+..++..+++
T Consensus 76 -------~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~-----------~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 76 -------LALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQ-----------VEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred -------HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444455554444444444433333333322211112 223778888888999999999999
Q ss_pred HHHHHHHHhhh
Q psy8072 487 LRIEFETNLAA 497 (584)
Q Consensus 487 L~~E~eq~~aa 497 (584)
|.+......+.
T Consensus 138 l~ar~~~a~a~ 148 (221)
T PF04012_consen 138 LKARENAAKAQ 148 (221)
T ss_pred HHHHHHHHHHH
Confidence 88887766654
No 152
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=86.50 E-value=19 Score=37.77 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=57.8
Q ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 210 IPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 210 ~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
...++..|+..-..+..++..++..++.|......+..++..-+..+.+.+.+++-|+.=.=..+.|+++.+..+++|
T Consensus 160 ~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 160 LNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888888888777766666666666666666665566678888888866554
No 153
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.23 E-value=39 Score=33.84 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVLYNENQLAKTQAQEFQS---HLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEML 487 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~---~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L 487 (584)
..++.++.++..+-+++..++-+-+.... .++.+|+.+.++-+.+ -.|+ +++..-+-.-||..+.-+...-|.-
T Consensus 86 ~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~-i~ev--qQk~~~kn~lLEkKl~~l~~~lE~k 162 (201)
T PF13851_consen 86 QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA-IQEV--QQKTGLKNLLLEKKLQALSEQLEKK 162 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554444444333222222 2555555555443111 1122 3334444456777777777777777
Q ss_pred HHHHHHHhhh
Q psy8072 488 RIEFETNLAA 497 (584)
Q Consensus 488 ~~E~eq~~aa 497 (584)
.+++.+.+++
T Consensus 163 eaqL~evl~~ 172 (201)
T PF13851_consen 163 EAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHH
Confidence 7888777776
No 154
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.89 E-value=25 Score=32.62 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 345 NRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 345 ~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.+-.|+..++.++..+..+-..+..+
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~E 52 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREE 52 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333
No 155
>KOG1853|consensus
Probab=85.74 E-value=49 Score=34.56 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 347 LQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 347 l~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
-.+|+.+...|..|..+++.|+++
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E 74 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTE 74 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777776
No 156
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.72 E-value=30 Score=32.10 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=60.1
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIV 408 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~ 408 (584)
+..+..++..+......-...+..++.++....+.....+.+. .+++..=.+.+
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y------------------------E~El~~Ha~~~-- 58 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKY------------------------ERELVKHAEDI-- 58 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHhHHHH--
Confidence 4566777777777777777777777777777777777777661 11111111112
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQ 451 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~q 451 (584)
.....|+.+++.+-..+..+++.++.++..|...+.++..+
T Consensus 59 --~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q 99 (132)
T PF07926_consen 59 --KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ 99 (132)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45556677777777777777777777777776666655444
No 157
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.59 E-value=33 Score=32.51 Aligned_cols=60 Identities=15% Similarity=0.326 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.|..|..+++..+..+.++.|.+-.........+..+..++..|+.+||.+...|..+..
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777778888888888888877777777777777777777777777777766666
No 158
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.27 E-value=27 Score=34.81 Aligned_cols=47 Identities=9% Similarity=0.246 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
.....++..+.........|+..+.+++.|+.+.......|+++...
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777777777777777777777777666544
No 159
>PRK11281 hypothetical protein; Provisional
Probab=84.76 E-value=1.2e+02 Score=38.12 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=27.7
Q ss_pred HhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 244 SISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 244 ~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
+...+++..+..++...+.+..++++.|.++..+..++.|.+.+.+
T Consensus 132 q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 132 QTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666666666666666665555544
No 160
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.43 E-value=9.1 Score=37.79 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
++..+...+..|..++.+...|+.++..... .+.|....+..+++++..|.-++.=.-.|++....|-..|
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~-------~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEE-------ELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666666655444 3677777777777777777777777777777777666655
No 161
>PF15294 Leu_zip: Leucine zipper
Probab=84.43 E-value=20 Score=37.76 Aligned_cols=59 Identities=15% Similarity=0.334 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 464 KKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 464 ~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv 526 (584)
+.+...|.-.-.+|-++.....+-..+++.... .-+..+-|+.++++...+|..|...+
T Consensus 218 k~L~e~L~~~KhelL~~QeqL~~aekeLekKfq----qT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 218 KALEETLQSCKHELLRVQEQLSLAEKELEKKFQ----QTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcchhhHHHHhC----ccHHHHHhHHHHHhccHHHHHHHHHh
Confidence 334555554445555555554444445544333 34667889999999999998886654
No 162
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=84.43 E-value=86 Score=36.28 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 504 INREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 504 i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
+..|+-.| .....+..+|+.++.+++.+|-+++..++..|..
T Consensus 330 ~~~el~~L-~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 330 IKEELAQL-DNSEESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred HHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333 3345678889999999999999999999998876
No 163
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=84.35 E-value=62 Score=34.57 Aligned_cols=227 Identities=17% Similarity=0.249 Sum_probs=125.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHH---------
Q psy8072 215 EAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRND--------- 285 (584)
Q Consensus 215 ~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~--------- 285 (584)
..|.+.-.++..++.+++..+..++-+...+..+...++..++ +...++..||.++-+|.+.++.+-
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~----k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~e 100 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS----KAILAKSKLESLCRELQKQNKKLKEESKRRARE 100 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888777777777766666555 444666777777777777776441
Q ss_pred ------hhHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 286 ------KLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHRE 359 (584)
Q Consensus 286 ------KL~~~la~ale~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~ 359 (584)
-+..++-.++..|... +.... .+..........|...+....+.-..|-..++++.. ...
T Consensus 101 ee~kR~el~~kFq~~L~dIq~~--~ee~~-----------~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k-~ke 166 (309)
T PF09728_consen 101 EEEKRKELSEKFQATLKDIQAQ--MEEQS-----------ERNIKLREENEELREKLKSLIEQYELREEHFEKLLK-QKE 166 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhcc-----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHH
Confidence 1112222222211111 11000 000000012345555555555555566555555542 334
Q ss_pred HHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHH-------HHHHHHHHHHHHHH
Q psy8072 360 ALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQS-------AYSVLYNENQLAKT 432 (584)
Q Consensus 360 l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~Lqs-------Q~s~l~~e~~~lk~ 432 (584)
|..++...+.. ......-.+....+.++. +++.+......|+.
T Consensus 167 LE~Ql~~AKl~------------------------------q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~ 216 (309)
T PF09728_consen 167 LEVQLAEAKLE------------------------------QQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELRE 216 (309)
T ss_pred HHHHHHHHHHH------------------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 112222222344445555 77777777778888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 433 QAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 433 qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
||.-|...+...-++... +.++.. ..+.+|..+-..+-++-++...+...++..-.+
T Consensus 217 QL~~Y~~Kf~efq~tL~k------SNe~F~--tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~ 273 (309)
T PF09728_consen 217 QLNLYSEKFEEFQDTLNK------SNEVFE--TFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKA 273 (309)
T ss_pred HHHHHHHHHHHHHHHHHH------hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 888888776665554433 334432 245566666666667777777777776665543
No 164
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.13 E-value=1e+02 Score=36.82 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMM 455 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~m 455 (584)
.+-+-|+.|+..+-+|-..|...|++.+..|...+.++..+.+.+
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki 309 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKI 309 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999988888888888888888888877777664433
No 165
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.89 E-value=1.1e+02 Score=36.93 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=96.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhc-----cccCCCCCCCCCCCCCCCccccchhhhH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQ-----MHTEDGKEKDVIKPEETMSNVSQKKLDD 331 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~-----~~~~~~~~~~~~~p~~g~~~~~~~k~ee 331 (584)
.++++++.-|+.+||.+...=..++-|+.-|+-+|-+.++++..... ++... ......|+-
T Consensus 20 ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~--------------~~~s~e~e~ 85 (769)
T PF05911_consen 20 EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAV--------------AKKSKEWEK 85 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH--------------HHHhHHHHH
Confidence 67888889999999998888888888887788777777766544221 11100 000122444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcCh
Q psy8072 332 LQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETT 411 (584)
Q Consensus 332 L~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~ 411 (584)
.+.+++.-..=+..| |.++..|+..|.+-+..--.- +..|.+.--.--.
T Consensus 86 ~~~~le~~l~e~~~~---l~~~~~e~~~l~~~l~~~~~~----------------------------i~~l~~~~~~~e~ 134 (769)
T PF05911_consen 86 IKSELEAKLAELSKR---LAESAAENSALSKALQEKEKL----------------------------IAELSEEKSQAEA 134 (769)
T ss_pred HHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHh
Confidence 444444333333333 344555555554433221111 2222222223335
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy8072 412 EYKCLQSAYSVLYNENQLAKTQAQEFQSHLS---ASKNNQQRQIEMMETEELMVQKK--LRGEMMQLEDALSQIR 481 (584)
Q Consensus 412 ~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq---~~R~~~~~qie~mE~~E~~~q~~--l~s~v~qlE~~LarvR 481 (584)
.+..|+..++.+-++...||-++.-....|. .+|+ |-+ .++|++..+. .-..|+.||.+-+|+|
T Consensus 135 ~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~-~~~-----~~ae~a~kqhle~vkkiakLEaEC~rLr 203 (769)
T PF05911_consen 135 EIEDLMARLESTEKENSSLKYELHVLSKELEIRNEERE-YSR-----RAAEAASKQHLESVKKIAKLEAECQRLR 203 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888877765554432 2222 222 2556655333 3336777777776666
No 166
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=83.63 E-value=67 Score=34.47 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8072 416 LQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQ 448 (584)
Q Consensus 416 LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~ 448 (584)
..+....+-++...++.+|.+++..|...|+.+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666666666888888888877777643
No 167
>PRK00295 hypothetical protein; Provisional
Probab=83.49 E-value=4.6 Score=33.64 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCc
Q psy8072 488 RIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGY 555 (584)
Q Consensus 488 ~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~ 555 (584)
..++|.++|- -...+.++-..|...+..|..|+.+|..+..++++..+ .+.....-++|.||
T Consensus 7 i~~LE~kla~---qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~---~~~~~~~e~~PPHY 68 (68)
T PRK00295 7 VTELESRQAF---QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVG---QFGSFEEEAPPPHY 68 (68)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCCCCCCCcCCC
Confidence 3455555554 33567888888999999999999999999888888652 22222223677776
No 168
>KOG2991|consensus
Probab=83.38 E-value=63 Score=33.87 Aligned_cols=165 Identities=24% Similarity=0.259 Sum_probs=102.2
Q ss_pred HhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhc
Q psy8072 334 KDLEEAKELANNRL----QELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVE 409 (584)
Q Consensus 334 ~eleE~k~LA~~Rl----~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~ 409 (584)
..+.+..+.|..|. ..|-.-.+|.+++.-++..||.. -.|.++ ..++
T Consensus 118 ~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~q---------------q~Ps~~--------------qlR~ 168 (330)
T KOG2991|consen 118 EKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQ---------------QQPSVA--------------QLRS 168 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------hCcHHH--------------HHHH
Confidence 34455555555553 45566677888889999999877 122222 1122
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASK--------------NNQQRQIEMMETEELMVQKKLRGEMMQLED 475 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R--------------~~~~~qie~mE~~E~~~q~~l~s~v~qlE~ 475 (584)
+-.--.+.--|+.|-++..+-+..|++++..|.+-+ -..+.+ |.+|+..+. ...+|++||.
T Consensus 169 ~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~q----ENeElG~q~-s~Gria~Le~ 243 (330)
T KOG2991|consen 169 TLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQ----ENEELGHQA-SEGRIAELEI 243 (330)
T ss_pred HhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHH----HHHHHHhhh-hcccHHHHHH
Confidence 222234456677887888888888888888765422 111222 466666544 7788999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 476 ALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 476 ~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
.|+=..+.-++|+.-+++. -..+.-|.+...-|++-|-=+..++|++..+|..|.+.
T Consensus 244 eLAmQKs~seElkssq~eL--------------~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 244 ELAMQKSQSEELKSSQEEL--------------YDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred HHHHHHhhHHHHHHhHHHH--------------HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777776655442 22333344555555555555667778888887777654
No 169
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.30 E-value=58 Score=33.44 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 473 LEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 473 lE~~LarvR~ere~L~~E~eq~~a 496 (584)
....|.+|-.+++.|...+.+...
T Consensus 51 h~eeLrqI~~DIn~lE~iIkqa~~ 74 (230)
T PF10146_consen 51 HVEELRQINQDINTLENIIKQAES 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544444
No 170
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.08 E-value=28 Score=35.65 Aligned_cols=122 Identities=18% Similarity=0.276 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHH--HHHHH
Q psy8072 351 DKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVL--YNENQ 428 (584)
Q Consensus 351 e~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l--~~e~~ 428 (584)
+++++++....--++.+|+=.+ -| +.+++.+.|..--.--.++.-+..| +.+++
T Consensus 76 ~kf~eeLrg~VGhiERmK~PiG---HD---------------------vEhiD~elvrkEl~nAlvRAGLktL~~v~~~~ 131 (290)
T COG4026 76 EKFFEELRGMVGHIERMKIPIG---HD---------------------VEHIDVELVRKELKNALVRAGLKTLQRVPEYM 131 (290)
T ss_pred HHHHHHHHHhhhhhheeccCCC---CC---------------------ccccCHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 5678888888999999997610 11 5666776665444333444444444 23444
Q ss_pred HHHHHHHHHHHH---HHHhHHHHHHHHHHHhH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 429 LAKTQAQEFQSH---LSASKNNQQRQIEMMET--EELMV-QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 429 ~lk~qL~e~r~~---Lq~~R~~~~~qie~mE~--~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~a 496 (584)
.+|..+.+.+.+ ++.++..+....++.++ ++.+- -+.++-+.++|+..+-++-.++..|+..|.+.-.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 455555555554 55667766666666644 44444 3338888888888888888889889888887443
No 171
>PRK02793 phi X174 lysis protein; Provisional
Probab=82.91 E-value=3 Score=35.14 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=40.5
Q ss_pred HHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCc
Q psy8072 489 IEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGY 555 (584)
Q Consensus 489 ~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~ 555 (584)
.++|.+++- -...+.++-..|...+..|..|+.+|..++.++++..... ......-++|.||
T Consensus 11 ~~LE~~laf---Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~--~~~~~~e~~PPHY 72 (72)
T PRK02793 11 AELESRLAF---QEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN--IASQAEETPPPHY 72 (72)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--CCCCCCCCCcCCC
Confidence 344444443 2356777888888899999999999999988888754322 1112222577776
No 172
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.44 E-value=1.1e+02 Score=35.87 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=26.5
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 236 TKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 236 ~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..+..+...+..++..+.........++..++.+++++..++..++.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555566666666665555555544
No 173
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.29 E-value=27 Score=33.89 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 335 DLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 335 eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
++.+....-+.-..|++++......+..++..++.+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555
No 174
>KOG0018|consensus
Probab=81.96 E-value=1.4e+02 Score=36.96 Aligned_cols=246 Identities=16% Similarity=0.233 Sum_probs=140.5
Q ss_pred HHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH-------HhhHHHHHHHHHHhhhhhccccCCCCCCCCCCCC
Q psy8072 246 SLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN-------DKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPE 318 (584)
Q Consensus 246 s~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~-------~KL~~~la~ale~~~s~~~~~~~~~~~~~~~~p~ 318 (584)
...+..+-+.++...+++..+...++....++.+..+.. .+.+.++.+--+++.. -+.- -..+.
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-------rp~l--i~~ke 296 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-------RPEL--IKVKE 296 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHH--hhcch
Confidence 345666677778888888888888877777776665433 2233322221111111 0000 00000
Q ss_pred CCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccch-
Q psy8072 319 ETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPR- 397 (584)
Q Consensus 319 ~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 397 (584)
+. +.-..++......++..+.-+..+-.+++++..+...+..--+.+--+ .++ - + |.-+
T Consensus 297 ~~--~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~feke----i~~----~---~-------q~rg~ 356 (1141)
T KOG0018|consen 297 NA--SHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKE----IEE----R---S-------QERGS 356 (1141)
T ss_pred hh--ccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHH----H---H-------hhccc
Confidence 00 111135777777777777777778888888888776665544444333 011 0 0 0000
Q ss_pred hhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Q psy8072 398 QIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMME-TEELMVQKKLRGEMMQLEDA 476 (584)
Q Consensus 398 ~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE-~~E~~~q~~l~s~v~qlE~~ 476 (584)
.+.-.++.+ .+|-+|+.+....- +++...+ .|+ .+...+. ..+..++.+++.++.+++..
T Consensus 357 ~lnl~d~~~----~ey~rlk~ea~~~~---------~~el~~l---n~~---~r~~~~~ld~~~~~~~elE~r~k~l~~s 417 (1141)
T KOG0018|consen 357 ELNLKDDQV----EEYERLKEEACKEA---------LEELEVL---NRN---MRSDQDTLDHELERRAELEARIKQLKES 417 (1141)
T ss_pred cCCcchHHH----HHHHHHHHHHhhhh---------HHHHHHH---HHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 011113333 67888887776652 2222222 111 1112221 23444567788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 477 LSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 477 LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
+-+....++.|...+....+ +..|+++...+++......+.+-.++...+.+....++-+.++
T Consensus 418 ver~~~~~~~L~~~i~s~~~-------~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~d 480 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAKITSLSR-------SYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASAD 480 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 88888888888877766554 5788888888888888888888888777776666666655544
No 175
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=81.95 E-value=61 Score=32.74 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=88.6
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIV 408 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~ 408 (584)
+.=|+..|.|+.+=.+.+..||-.|+..+..+..++...... +..+.+..=.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~----------------------------~~~l~~~~~~ 63 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQ----------------------------IQELQDSLRT 63 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHH----------------------------HHHHHHHHHH
Confidence 455778888888888888888888888888877777776666 3333333333
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHH---hHHHHHH--------HHHHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQI----EMM---ETEELMV--------QKKLRGEMMQL 473 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qi----e~m---E~~E~~~--------q~~l~s~v~ql 473 (584)
.+.+-...+..+.-.-+++..++..+......+...|....... ..+ +.+++.. ...++.++..|
T Consensus 64 K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL 143 (202)
T PF06818_consen 64 KQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERL 143 (202)
T ss_pred hhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHH
Confidence 33444444445544555555555555554444555555444320 000 2233322 22388899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 474 EDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 474 E~~LarvR~ere~L~~E~eq~~aa 497 (584)
-.+|+..|..+|....-|++-...
T Consensus 144 ~aeL~~er~~~e~q~~~Fe~ER~~ 167 (202)
T PF06818_consen 144 RAELQRERQRREEQRSSFEQERRT 167 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999987663
No 176
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.91 E-value=67 Score=33.30 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 465 KLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 465 ~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
.....+..+.+.+++.+.+++.+..|+++.-+.
T Consensus 160 ~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~k 192 (243)
T cd07666 160 QIQAELDSKVEALANKKADRDLLKEEIEKLEDK 192 (243)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 355566677888888888888888877765554
No 177
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.68 E-value=79 Score=33.83 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy8072 412 EYKCLQSAYSVL---YNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLR---GEMMQLEDALSQIRKEYE 485 (584)
Q Consensus 412 ~Yk~LqsQ~s~l---~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~---s~v~qlE~~LarvR~ere 485 (584)
-++-|+..+..+ |+..+-.++|||-.+..|.-.-+.+...+++|+..=+..+.+++ .++..+-..+..++.+.+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566555555 77788889999888877666666666677777665454455533 345666677888888888
Q ss_pred HHHHHHHHH
Q psy8072 486 MLRIEFETN 494 (584)
Q Consensus 486 ~L~~E~eq~ 494 (584)
.|+.++.++
T Consensus 158 ~Lre~L~~r 166 (302)
T PF09738_consen 158 ELREQLKQR 166 (302)
T ss_pred HHHHHHHHH
Confidence 888888876
No 178
>KOG4005|consensus
Probab=81.60 E-value=13 Score=38.35 Aligned_cols=44 Identities=32% Similarity=0.340 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHH
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAEL 266 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL 266 (584)
+|..||.+|+.+++.|+++.|.+..+-.++...+..+..++.++
T Consensus 101 dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 101 DLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 45566777777777777777777666654444444444444444
No 179
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=81.56 E-value=1e+02 Score=35.08 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=12.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSI 245 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~l 245 (584)
....+..+...+..++..+..++..+
T Consensus 110 e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 110 ELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455544444444444
No 180
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.08 E-value=63 Score=32.30 Aligned_cols=115 Identities=20% Similarity=0.301 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------hHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy8072 412 EYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMM------ETEELMVQKK-LRGEMMQLEDALSQIRKEY 484 (584)
Q Consensus 412 ~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~m------E~~E~~~q~~-l~s~v~qlE~~LarvR~er 484 (584)
+-+.|+.++..+-.....+...+.+....|+..++....-.... |.++++.+-. +...+...+..+..+.+.-
T Consensus 69 Evr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 69 EVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333322111 2333333211 4444444444444444433
Q ss_pred HHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8072 485 EMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKET 536 (584)
Q Consensus 485 e~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea 536 (584)
+...--|...++ .|.+. +..++..+..|..||.+++.+++|-
T Consensus 149 eL~~k~~~rql~---------~e~kK-~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 149 ELENKSFRRQLA---------SEKKK-HKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHhhHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222222 22222 3345566666677777776666653
No 181
>PRK00846 hypothetical protein; Provisional
Probab=80.92 E-value=6.5 Score=33.74 Aligned_cols=51 Identities=8% Similarity=0.091 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCc
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGY 555 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~ 555 (584)
..+.++-..|...+..|..|+.++..++.++|++..... .....-++|.||
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~--~~~~dE~PPPHY 77 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLF--ADPADEPPPPHY 77 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--CCCCCCCCcCCC
Confidence 556777778888899999999999999999999874332 222223688887
No 182
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=80.40 E-value=35 Score=37.75 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 347 LQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 347 l~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+.||.++++.+..|...++.||.+
T Consensus 218 ~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777776
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.39 E-value=40 Score=36.04 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
+..++..+|.+..++..+...|+.+.++.... -.++-+..+.++-+...++.+..-++.++.-+...+.+||.
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e-------E~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEE-------EEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777777766666664432 22445556666777777777777777777888999999988
Q ss_pred h
Q psy8072 546 S 546 (584)
Q Consensus 546 ~ 546 (584)
.
T Consensus 135 t 135 (314)
T PF04111_consen 135 T 135 (314)
T ss_dssp -
T ss_pred c
Confidence 6
No 184
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.12 E-value=4.8 Score=33.50 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=30.3
Q ss_pred HHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCc
Q psy8072 489 IEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGY 555 (584)
Q Consensus 489 ~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~ 555 (584)
.++|.++|- -...+.++-..|...+..|..|+.++..++.++++....... .....-++|.||
T Consensus 7 ~~LE~~la~---qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~~~-~~~~~~~~PPHY 69 (69)
T PF04102_consen 7 EELEIKLAF---QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPSGS-ADPPEEEPPPHY 69 (69)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CCCCCCCCcCCC
Confidence 344555553 235677777888888899999999999998888886633222 222222567676
No 185
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.67 E-value=1.2e+02 Score=34.78 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETN 494 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~ 494 (584)
....+..++..+.+++.++..+-.++...
T Consensus 344 ~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 344 SDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666655555443
No 186
>KOG4593|consensus
Probab=79.67 E-value=1.4e+02 Score=35.38 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-----------Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 470 MMQLEDALSQIRKEYEMLRIEFETNLAANEQT-----------GPI-NREMRHLITSLQNHNKQIKGEVNRYKR 531 (584)
Q Consensus 470 v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~-----------g~i-~~Emr~LisSlq~~i~~LksEv~R~K~ 531 (584)
+.+....+-.++-+-++|++.++-+....+.+ ||. ..+ .+..+.+.+|+.|+.|+|.
T Consensus 505 i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~-----~~~k~~~e~LqaE~~~lk~ 573 (716)
T KOG4593|consen 505 IEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKAR-----QIKKNRLEELQAELERLKE 573 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666655542222 222 111 1345677777777777765
No 187
>PRK02119 hypothetical protein; Provisional
Probab=79.45 E-value=4.8 Score=34.01 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCc
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGY 555 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~ 555 (584)
..+.++-..|...+..|..|+.++..++.++++..... ......-++|.||
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~~--~~~~~~e~~PPHY 73 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPSN--IASQAEETPPPHY 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--CCCCCCCCCcCCC
Confidence 45677777888888999999999999988888865331 1112223577776
No 188
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.22 E-value=73 Score=31.91 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
++-+-..|+..+.+|-.|||+|...|+.....
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~e 136 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRKFESAIQE 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666778888899999999999999988774
No 189
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.10 E-value=18 Score=30.50 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 472 QLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
+||..+++-..-.--|..|+++.+..|-+-..-..+.++-..+|..+|.+||.|-.-|..+++
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666677777777764444455667788889999999999999988865554
No 190
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.01 E-value=1.5e+02 Score=35.43 Aligned_cols=79 Identities=10% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHHhHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q psy8072 217 VREANIEIQTE-NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEAT 295 (584)
Q Consensus 217 l~~~n~~L~~E-~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~al 295 (584)
|.+...-|.++ +.++...-..++.+-+.+..++....+.+...+.+++.|+..-+.+..+++.+..+-.+|..++...+
T Consensus 541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444 34444444444445555555555555555555555555555555556666666655556666555555
No 191
>KOG4438|consensus
Probab=78.89 E-value=97 Score=34.60 Aligned_cols=131 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 413 YKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMET---EELMVQKKLRGEMMQLEDALSQIRKEYEMLRI 489 (584)
Q Consensus 413 Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~---~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~ 489 (584)
|-.+++---++|++.-+...-+.+.+.++++-+.....+++.++. .+..--+.++.++.+|...|-+.-+....+++
T Consensus 122 fa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~ 201 (446)
T KOG4438|consen 122 FALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLA 201 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcccCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 490 EFETNLAANEQTG-PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 490 E~eq~~aa~Eq~g-~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
++...+-.+-+.. .+....+-||.+|+.....|++++.--=.|++++-.|..-+
T Consensus 202 e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~ 256 (446)
T KOG4438|consen 202 EYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDL 256 (446)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
No 192
>KOG0946|consensus
Probab=78.71 E-value=1.6e+02 Score=35.57 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy8072 463 QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQK 542 (584)
Q Consensus 463 q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~ 542 (584)
+++..+++.++...+++...+...+..+. .| ..+....|..--..+.+...-.++++.-|+.|.|.-...|..
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~t---sa----~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ 873 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERT---SA----AADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKE 873 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH---Hh----hhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44455566666666666555544433322 22 234555555555555555555566666665555555544444
Q ss_pred hhhh
Q psy8072 543 VRIS 546 (584)
Q Consensus 543 lr~~ 546 (584)
+-+.
T Consensus 874 ltEk 877 (970)
T KOG0946|consen 874 LTEK 877 (970)
T ss_pred Hhhh
Confidence 4333
No 193
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.56 E-value=91 Score=32.67 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHS-ISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~-ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
...|...-..+.+.++.|.-+++. +..--..|+.--.+.++++..|+.+++.+...+.++..
T Consensus 40 Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~ 102 (258)
T PF15397_consen 40 VRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQE 102 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777777777777666 44444566666677777888888888888888888877
No 194
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.53 E-value=14 Score=39.36 Aligned_cols=42 Identities=26% Similarity=0.504 Sum_probs=29.8
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
..++..+++.++.--..=++||++|..+...+.+++..|+.+
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666777888888888888888887777
No 195
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.38 E-value=57 Score=30.24 Aligned_cols=22 Identities=18% Similarity=0.587 Sum_probs=14.0
Q ss_pred hhhHHHHhHHHHHHHHHHHHHH
Q psy8072 328 KLDDLQKDLEEAKELANNRLQE 349 (584)
Q Consensus 328 k~eeL~~eleE~k~LA~~Rl~E 349 (584)
..++|++++...|++-.....+
T Consensus 97 ~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 97 EVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777666555443
No 196
>KOG0962|consensus
Probab=78.32 E-value=2e+02 Score=36.51 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITS----LQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisS----lq~~i~~LksEv~R~K~k~k 534 (584)
+.+++..++.++.+++.++-... +...... .....+=+.+++| +-.+|.++++++.+||+.++
T Consensus 1013 l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee----~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1013 LERKLKELERELSELDKQILEAD--IKSVKEE----RVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH--HHHHHHH----HHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 66677777777777766654444 2221111 1223333334443 44567777777777776665
No 197
>PLN03188 kinesin-12 family protein; Provisional
Probab=77.83 E-value=1.2e+02 Score=38.42 Aligned_cols=169 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHH--HHHHHHHHHHHHH
Q psy8072 353 LHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQ--SAYSVLYNENQLA 430 (584)
Q Consensus 353 L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~Lq--sQ~s~l~~e~~~l 430 (584)
+.+|+..|+.+-.-||.+ |...|--|.|.+. |+.+.+++ ..|+.+- ..-+++..+|.+|
T Consensus 938 ~~~~~~~~~~~~~~~~~~-------------y~~~p~~~~~~~e--~~~~~~e~----~~~~~~~d~~ErEvll~eI~dl 998 (1320)
T PLN03188 938 LEEELASLMHEHKLLKEK-------------YENHPEVLRTKIE--LKRVQDEL----EHYRNFYDMGEREVLLEEIQDL 998 (1320)
T ss_pred hhhhhhhhhhhHHHHHHH-------------hhcChhhhhhhHH--HHHHHHHH----HHHHhhccchhHHHHHHHHHHH
Q ss_pred HHHHHHH-----------------------------------------------------------------HHHHHHhH
Q psy8072 431 KTQAQEF-----------------------------------------------------------------QSHLSASK 445 (584)
Q Consensus 431 k~qL~e~-----------------------------------------------------------------r~~Lq~~R 445 (584)
+.+|.-+ |..|.+-|
T Consensus 999 r~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r 1078 (1320)
T PLN03188 999 RSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASR 1078 (1320)
T ss_pred HHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHH
Q ss_pred HHHHHHHHHH--------hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHH
Q psy8072 446 NNQQRQIEMM--------ETEELMVQKK-----LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLI 512 (584)
Q Consensus 446 ~~~~~qie~m--------E~~E~~~q~~-----l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~Li 512 (584)
.--.+..-++ |..|+....- +-.+-++|+....++-.---.++--+.+.+.|..-+|--=+| -..|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~-~~f~ 1157 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAE-SKFI 1157 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHH
Q ss_pred HHHHHHHHHHHHH-----------HHHHHhhhHHHHHHHH
Q psy8072 513 TSLQNHNKQIKGE-----------VNRYKRKYKETSAEIQ 541 (584)
Q Consensus 513 sSlq~~i~~LksE-----------v~R~K~k~kea~~e~~ 541 (584)
++|..+|..|+-| -..++-.+++|+..++
T Consensus 1158 ~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~ 1197 (1320)
T PLN03188 1158 NALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQ 1197 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
No 198
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=77.61 E-value=84 Score=31.77 Aligned_cols=64 Identities=25% Similarity=0.293 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHH
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHL 291 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~l 291 (584)
+-.|+..+-.+.++.+.....+..+++.......++..+.++|.....+.+-.+.++.+|+..+
T Consensus 33 iv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El 96 (202)
T PF06818_consen 33 IVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAEL 96 (202)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHH
Confidence 3345555555555555555566666666666666666666666666666666666555555433
No 199
>KOG0963|consensus
Probab=77.55 E-value=1.5e+02 Score=34.64 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=46.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHH
Q psy8072 219 EANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATE 296 (584)
Q Consensus 219 ~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale 296 (584)
.+..+|-+++..|...-+...-.++.+..+-.+++-. ..+...+....-|--+|.+++-+-+|-.==+..+..+.+
T Consensus 19 ~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~--~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye 94 (629)
T KOG0963|consen 19 RLQRELDAEATEIAQRQDESEISRKRLAEETREFKKN--TPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYE 94 (629)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566666777777777777777777777776665543 344455566666666777777666644333344444443
No 200
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.87 E-value=26 Score=39.75 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQ-----------TGPINREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq-----------~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
++.+|.++++.+++++.+.+-+...+.-..+-.+. .+....++..+......++..+..++..+.++.+
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665555555544332221111 1246788999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcC
Q psy8072 535 ETSAEIQKVRISERS 549 (584)
Q Consensus 535 ea~~e~~~lr~~~~s 549 (584)
+...++..|+.+...
T Consensus 156 ~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 156 ELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888654
No 201
>PRK00736 hypothetical protein; Provisional
Probab=76.78 E-value=8.9 Score=31.93 Aligned_cols=62 Identities=10% Similarity=0.158 Sum_probs=42.1
Q ss_pred HHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCc
Q psy8072 488 RIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGY 555 (584)
Q Consensus 488 ~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~ 555 (584)
..++|.+++- -...+.++-..|...+..|..|+.+|..+..++++.... ......-++|.||
T Consensus 7 i~~LE~klaf---qe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~---~~~~~~~~~PPHY 68 (68)
T PRK00736 7 LTELEIRVAE---QEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQ---AAPDVPVTKPPHW 68 (68)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCCCCCCCCcCCC
Confidence 3445555554 225677888889999999999999999999988886432 1112222577776
No 202
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.75 E-value=22 Score=29.18 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHH
Q psy8072 230 NLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQ 274 (584)
Q Consensus 230 ~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~ 274 (584)
.++.+++++++-+..+..+++.......-+..+|..|+.++++++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477777777777777777775555555555555555555555544
No 203
>KOG0964|consensus
Probab=76.66 E-value=2e+02 Score=35.55 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 415 CLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMM--------ETEELMVQKKLRGEMMQLEDALSQIRKEYEM 486 (584)
Q Consensus 415 ~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~m--------E~~E~~~q~~l~s~v~qlE~~LarvR~ere~ 486 (584)
.++.++..+-........+|+.....++.......-...++ -.+|..+-+++..+|.++-..+.+++.++=+
T Consensus 731 ~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~ 810 (1200)
T KOG0964|consen 731 TIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERID 810 (1200)
T ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555544444333322222222 2355555666888999999999999888755
No 204
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.42 E-value=1.9e+02 Score=35.25 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=23.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHh---hhhchhhHHHHHHHHHHHHHHHHHHHH
Q psy8072 50 LAQRIEQKNQVEHELRSRIEQLEK---RQTQDDAVLNVVNRYWNQLNEDIRILL 100 (584)
Q Consensus 50 L~Q~LE~qr~~~~~LE~rieeLe~---rQ~~~D~~L~vVnr~WnQL~ddi~lL~ 100 (584)
|+..++.-.....+|+.-.+++++ +-.++.....-+.+-|....+++....
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLL 283 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555555555555555555555555 333322233322244544444444443
No 205
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=76.15 E-value=15 Score=29.70 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=31.3
Q ss_pred HHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8072 241 KYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRND 285 (584)
Q Consensus 241 khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~ 285 (584)
|...|+.+++.|.++++.+..++.-|+..+..+..|..++..|++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667777777777777777777777777777777443
No 206
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=76.08 E-value=1.3e+02 Score=33.29 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHH
Q psy8072 348 QELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNEN 427 (584)
Q Consensus 348 ~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~ 427 (584)
.++-+.++++..++++-++|+.. |.++. ..|..|-.|..-||+..
T Consensus 130 ~n~~kAqQ~lar~t~Q~q~lqtr----------------------------l~~l~-------~qr~ql~aq~qsl~a~~ 174 (499)
T COG4372 130 QNLAKAQQELARLTKQAQDLQTR----------------------------LKTLA-------EQRRQLEAQAQSLQASQ 174 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888 55443 57888888888898888
Q ss_pred HHHH---HHHH
Q psy8072 428 QLAK---TQAQ 435 (584)
Q Consensus 428 ~~lk---~qL~ 435 (584)
.+|. +||+
T Consensus 175 k~LQ~s~~Qlk 185 (499)
T COG4372 175 KQLQASATQLK 185 (499)
T ss_pred HHHHHHHHHHH
Confidence 8876 5553
No 207
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.89 E-value=98 Score=31.66 Aligned_cols=62 Identities=10% Similarity=0.193 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDK 286 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~K 286 (584)
.......|..++.+...-..+..++..+...+..++..+++++..+++.+.++.....++..
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555666666666666666666666666554433
No 208
>PF15294 Leu_zip: Leucine zipper
Probab=75.84 E-value=1.1e+02 Score=32.33 Aligned_cols=56 Identities=7% Similarity=0.137 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHH
Q psy8072 343 ANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSV 422 (584)
Q Consensus 343 A~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~ 422 (584)
+...-..+..|.+.+.....++-..+..+.. ...-++.-+..|..|+.++.-+..
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~-------------------------aekeLekKfqqT~ay~NMk~~ltk 264 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLSL-------------------------AEKELEKKFQQTAAYRNMKEILTK 264 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhc-------------------------chhhHHHHhCccHHHHHhHHHHHh
Confidence 4455556777777777777777766666211 222256668889999999877666
Q ss_pred H
Q psy8072 423 L 423 (584)
Q Consensus 423 l 423 (584)
=
T Consensus 265 K 265 (278)
T PF15294_consen 265 K 265 (278)
T ss_pred c
Confidence 5
No 209
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.54 E-value=23 Score=31.33 Aligned_cols=61 Identities=26% Similarity=0.474 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh---hhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQD---AVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d---~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
-.|..+...++..++.|+++...++.++..+.. ....+..+.+.++.++.++..++..+..
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999988887 4677778888888888888888877777
No 210
>KOG3647|consensus
Probab=75.41 E-value=47 Score=34.95 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHH-------HHHHHHHHhHHHhhH
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDL-------QYELSKVQSRNDKLE 288 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~-------~~eL~k~~rr~~KL~ 288 (584)
|..-+++.+..+.++.++......+..+|..++.+...++.+++..|+.+ ..+|++.+.+++||-
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly 181 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLY 181 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34447777777777777777788888888888899999999999999987 479999999998874
No 211
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.39 E-value=1.9e+02 Score=34.65 Aligned_cols=29 Identities=7% Similarity=0.284 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKR 531 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~ 531 (584)
...+.++..+...-.+|..|-.+|++++.
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777777754
No 212
>KOG3433|consensus
Probab=75.36 E-value=26 Score=34.79 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
.++....|+.+|+..+...-.|.--+|-+++.++.+.....|+....+++++.+..|+-++..++.---.+-..+..+++
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K 158 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEK 158 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 35556677777777777777777788888888888888899999999999999999999999986444444444444443
No 213
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=75.26 E-value=1.3e+02 Score=32.85 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHH
Q psy8072 348 QELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNEN 427 (584)
Q Consensus 348 ~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~ 427 (584)
..|+.+....+.|..+++.+.-. -....... ...+.+..||.-.
T Consensus 261 ~~Ld~i~~rl~~L~~~~~~l~~~----------------------------~~~~~~~~--------~~e~KI~eLy~~l 304 (388)
T PF04912_consen 261 AKLDSIERRLKSLLSELEELAEK----------------------------RKEAKEDA--------EQESKIDELYEIL 304 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----------------------------cccccccc--------cchhHHHHHHHHH
Confidence 35888889999999999888755 22111110 1224444555444
Q ss_pred HHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q psy8072 428 QLA---KTQAQEFQSHLSASKNNQQRQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGP 503 (584)
Q Consensus 428 ~~l---k~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~ 503 (584)
..+ ...|=..-..|.+.+.=|. ++.+... -..+++...++...+.+...--+.++..|.+++..
T Consensus 305 ~~~~~~~~~lP~lv~RL~tL~~lH~------~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~------ 372 (388)
T PF04912_consen 305 PRWDPYAPSLPSLVERLKTLKSLHE------EAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMET------ 372 (388)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 443 2333223333444444222 2223332 33367777777777777777777777777777765
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy8072 504 INREMRHLITSLQNHNKQI 522 (584)
Q Consensus 504 i~~Emr~LisSlq~~i~~L 522 (584)
|..-+..+..||..|
T Consensus 373 ----i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 373 ----IEKNVKKLEERIAKL 387 (388)
T ss_pred ----HHHHHHHHHHHHhcc
Confidence 566666777777665
No 214
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.25 E-value=90 Score=30.93 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVN 527 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~ 527 (584)
++.++.+|+..++.++..++.+...+++.++. ...-...=|..|...|.+|+.++.
T Consensus 132 L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~------~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKNKCEQLEKREEELRQE------EEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666666666666666555543 112223333445555555555553
No 215
>KOG0982|consensus
Probab=74.96 E-value=1.5e+02 Score=33.29 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 348 QELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 348 ~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+|++.|+++|..|..+++.|++.
T Consensus 410 qevkrLrq~nr~l~eqneelngt 432 (502)
T KOG0982|consen 410 QEVKRLRQPNRILSEQNEELNGT 432 (502)
T ss_pred HHHHHhccccchhhhhhhhhhhh
Confidence 45677889999999999999988
No 216
>PF15456 Uds1: Up-regulated During Septation
Probab=74.89 E-value=49 Score=30.82 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHh-----------hhhhhhchHHHHHHHHHHHHHHHHHHHHHhH
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYH------SISLKISEL-----------QDAVNGKETEAAELRNQIDDLQYELSKVQSR 283 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk------~ls~e~~~l-----------~d~~~~~ese~~eL~~qLee~~~eL~k~~rr 283 (584)
.++|+.|...|...|..+..++. ....-+..+ .+.....+.++..+...+|++..+|.++++|
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R 103 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENR 103 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555555555555555554444 433333333 2345667788888889999999999999998
Q ss_pred HHhhH----HHHHHHH
Q psy8072 284 NDKLE----NHLLEAT 295 (584)
Q Consensus 284 ~~KL~----~~la~al 295 (584)
...+. .|.|.++
T Consensus 104 ~~~~~~rLLeH~AavL 119 (124)
T PF15456_consen 104 LAEVRQRLLEHTAAVL 119 (124)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 85544 5555544
No 217
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=74.84 E-value=1.8e+02 Score=34.10 Aligned_cols=58 Identities=12% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..+...-+..+..|+.....+..++..+.+.+......++++..+++....+....+.
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666666666555555555555555555555555555444443
No 218
>KOG0804|consensus
Probab=74.70 E-value=1e+02 Score=34.76 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~~a 496 (584)
...+..++..+...+..+|.-..++++.+.
T Consensus 416 ~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 416 RGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554443
No 219
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.69 E-value=20 Score=30.90 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 471 MQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 471 ~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
.+||..+++-.....-|+-|+++.+..|.+-..-+.++++==++|..+|.+|+.|-.-|..+++
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666677777767664444444555555556689999999999998866654
No 220
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=74.54 E-value=1.7e+02 Score=33.66 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=24.3
Q ss_pred HhHHHHHHhhhhhhhchHHHHHHH--HHHHHHHHHHHHHHhHHH
Q psy8072 244 SISLKISELQDAVNGKETEAAELR--NQIDDLQYELSKVQSRND 285 (584)
Q Consensus 244 ~ls~e~~~l~d~~~~~ese~~eL~--~qLee~~~eL~k~~rr~~ 285 (584)
-|..+++...+++++++.|.+.+. .||+ +..|++-.+|+.
T Consensus 306 ~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~--kIKLEKEnkRia 347 (518)
T PF10212_consen 306 GLAQQVQQSQEKIAKLEQEKEHWMLEAQLA--KIKLEKENKRIA 347 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 456667777777777777777644 4444 345555555443
No 221
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.52 E-value=53 Score=31.52 Aligned_cols=56 Identities=23% Similarity=0.455 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..+..++..|+.++..|....+.+..++..+....+. .+|...++.+..++...+.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHH
Confidence 4455668888888888888888888888777666543 3455666666666666665
No 222
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.38 E-value=82 Score=30.04 Aligned_cols=71 Identities=27% Similarity=0.326 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
+.+.+.+++.+|.-||++++.|--+++.-... +.|+..+.+++.+.+.-.+.+-...+ .++.+.+..|-+
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k-------v~eLE~~~~~~~~~l~~~E~ek~q~~---e~~~~~ve~L~~ 133 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEK-------VSELESLNSSLENLLQEKEQEKVQLK---EESKSAVEMLQK 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 66677778888888888888887777775554 78888888888888888888843332 334444555544
Q ss_pred h
Q psy8072 546 S 546 (584)
Q Consensus 546 ~ 546 (584)
+
T Consensus 134 q 134 (140)
T PF10473_consen 134 Q 134 (140)
T ss_pred H
Confidence 4
No 223
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.09 E-value=69 Score=30.03 Aligned_cols=84 Identities=12% Similarity=0.268 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8072 170 VQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKI 249 (584)
Q Consensus 170 ~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~ 249 (584)
+=.||+.|+..+..+..+- ..+.+.|......|...+.+|-..++...+-.+.
T Consensus 34 M~vTrr~m~~A~~~v~kql----------------------~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~----- 86 (126)
T PF07889_consen 34 MFVTRRSMSDAVASVSKQL----------------------EQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQ----- 86 (126)
T ss_pred HHHHHHhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----
Confidence 3467777776666665432 2344455555555665565555555533333333
Q ss_pred HHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 250 SELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 250 ~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
.+.++.++++.++.+..++......+.-|+.
T Consensus 87 ---------i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 87 ---------IKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred ---------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 224
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=73.90 E-value=1.7e+02 Score=33.38 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhc
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVE 409 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~ 409 (584)
.+-...+.+.+.-....-.+|..++.++..+..++..++.. +.....+..+..=.=
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~------------------------le~~~~~~~ek~~~l 104 (475)
T PRK10361 49 KQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTR------------------------MEAAQQHADDKIRQM 104 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHH
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSH---------LSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQI 480 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~---------Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~Larv 480 (584)
...=..|+.+|..|-+++..-|.+-...+.. |...=..|..+++.++..++..+..|..+|..|-....++
T Consensus 105 ~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i 184 (475)
T PRK10361 105 INSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQM 184 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q psy8072 481 RKEYEML 487 (584)
Q Consensus 481 R~ere~L 487 (584)
..+=.-|
T Consensus 185 ~~ea~nL 191 (475)
T PRK10361 185 AQEAINL 191 (475)
T ss_pred HHHHHHH
No 225
>KOG0018|consensus
Probab=73.82 E-value=2.4e+02 Score=35.13 Aligned_cols=92 Identities=15% Similarity=0.313 Sum_probs=64.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCccccchhhhHHHHhH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDL 336 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~el 336 (584)
.-.+.++.+++..+++++-+++...++++.....+++. +++.. .+.+++++++.+.
T Consensus 803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-----------------------k~k~~~~~~~~e~ 858 (1141)
T KOG0018|consen 803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-----------------------KNKSKFEKKEDEI 858 (1141)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-----------------------HHHHHHHHHHHHH
Confidence 33455566666666666666666666555555544443 22111 1135689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8072 337 EEAKELANNRLQELDKLHLQHREALKDVEKLKMDWE 372 (584)
Q Consensus 337 eE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~ 372 (584)
.|.+..+..=..++.+|..+...+..+++++..+|-
T Consensus 859 ~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~ 894 (1141)
T KOG0018|consen 859 NEVKKILRRLVKELTKLDKEITSIESKIERKESERH 894 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999988753
No 226
>PF14992 TMCO5: TMCO5 family
Probab=73.43 E-value=82 Score=33.35 Aligned_cols=65 Identities=12% Similarity=0.329 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ke 535 (584)
+...++.+|..+++|..+|+.. ..+... +++ ....+..-++-| .. ..+|..|..+|.+|......
T Consensus 121 l~~~~~~qE~ei~kve~d~~~v-~~l~eD-q~~-~i~klkE~L~rm-E~-ekE~~lLe~el~k~q~~~s~ 185 (280)
T PF14992_consen 121 LLESCASQEKEIAKVEDDYQQV-HQLCED-QAN-EIKKLKEKLRRM-EE-EKEMLLLEKELSKYQMQDSQ 185 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHH-HHHHHHHHHHHH-HH-HHHHHHHHHHHHHHhchhhc
Confidence 5667777777888887777653 112211 110 011222233222 23 77888899999888665333
No 227
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.36 E-value=48 Score=33.45 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=14.7
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhH
Q psy8072 254 DAVNGKETEAAELRNQIDDLQYELSKVQSR 283 (584)
Q Consensus 254 d~~~~~ese~~eL~~qLee~~~eL~k~~rr 283 (584)
+.+..++.+.++|+.+++.++.+++.++..
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555554443
No 228
>PRK04406 hypothetical protein; Provisional
Probab=73.30 E-value=15 Score=31.33 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETS 537 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~ 537 (584)
..+.++-..|...+..|..|+.++..+++++++..
T Consensus 25 ~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 25 QTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55677777888888999999999999988887754
No 229
>KOG0243|consensus
Probab=73.19 E-value=2.4e+02 Score=34.99 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
+..+...++..|...-.+...+.-++.+..+.-.-.-.++..+..+-..+.++ ...+++-+.+++.+++.|-.
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~-------a~~l~~~~~~s~~d~s~l~~ 553 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDR-------ATKLRRSLEESQDDLSSLFE 553 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 55566666677776666666666666665553001114555555555555555 34445566888888888877
Q ss_pred hhcC
Q psy8072 546 SERS 549 (584)
Q Consensus 546 ~~~s 549 (584)
..++
T Consensus 554 kld~ 557 (1041)
T KOG0243|consen 554 KLDR 557 (1041)
T ss_pred Hhhh
Confidence 7655
No 230
>PRK11281 hypothetical protein; Provisional
Probab=72.80 E-value=2.6e+02 Score=35.18 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=25.2
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8072 252 LQDAVNGKETEAAELRNQIDDLQYELSKVQSRND 285 (584)
Q Consensus 252 l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~ 285 (584)
+-++....+.+.++++.+++++..++..+.++++
T Consensus 71 ~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le 104 (1113)
T PRK11281 71 LLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344567777888888888888888888888433
No 231
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.62 E-value=81 Score=28.80 Aligned_cols=74 Identities=24% Similarity=0.262 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEAT 295 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~al 295 (584)
++|..+...|...+..|++........+..++.+++-+...+..-+....+++.++.|+++.-.=|+-+|+++.
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e~~ 106 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAEAK 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhc
Confidence 33444444455555555555555555554444444555555555444455555666666665445566666553
No 232
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=71.08 E-value=1.5e+02 Score=31.51 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 431 KTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEF 491 (584)
Q Consensus 431 k~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~ 491 (584)
+..|+..+..|..+=....-++ -.-|.+... .+..|..|+.++.+|+.+.|-.+-..
T Consensus 76 c~~lek~rqKlshdlq~Ke~qv---~~lEgQl~s-~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 76 CENLEKTRQKLSHDLQVKESQV---NFLEGQLNS-CKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHhhHHHhhhHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666666554433333333 222333222 56688899999999999888655443
No 233
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.01 E-value=49 Score=28.60 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHH
Q psy8072 350 LDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQL 429 (584)
Q Consensus 350 Le~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~ 429 (584)
|++|....+.+...+.=|||+ +. -|+.+...|..+.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmE----------------------------ie--------------ELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQME----------------------------IE--------------ELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------------HH--------------HHHHHHHHHHHHHHH
Confidence 677788888888888888888 44 455566666555555
Q ss_pred H---HHHHHHHHHHHHHhHHHHHHHH
Q psy8072 430 A---KTQAQEFQSHLSASKNNQQRQI 452 (584)
Q Consensus 430 l---k~qL~e~r~~Lq~~R~~~~~qi 452 (584)
+ +..|...-..|+.+++++..++
T Consensus 44 ~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 44 AQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3345555555666666666555
No 234
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.90 E-value=56 Score=38.76 Aligned_cols=112 Identities=9% Similarity=0.203 Sum_probs=64.1
Q ss_pred hhhhhcChhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 404 ESVIVETTEYKCLQSA--YSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMET-EELMVQKKLRGEMMQLEDALSQI 480 (584)
Q Consensus 404 ee~I~~S~~Yk~LqsQ--~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~-~E~~~q~~l~s~v~qlE~~Larv 480 (584)
+.+|..+-..|.-..+ ...+-++...++.+|+.+...|+..|..+. -+.. .++ +. +-.++.+++.+++.+
T Consensus 251 ~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~----~~d~~~ea--~~-~l~~~~~l~~ql~~l 323 (726)
T PRK09841 251 NNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRD----SVDLNLEA--KA-VLEQIVNVDNQLNEL 323 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCCCCHHH--HH-HHHHHHHHHHHHHHH
Confidence 3334344444443333 666777777778888888777877776431 1111 111 11 223566666666666
Q ss_pred HHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 481 RKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 481 R~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~ 529 (584)
+.....|...+ . ...|.+..++.-+.+++.++..+++++..+
T Consensus 324 ~~~~~~l~~~~----~---~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~ 365 (726)
T PRK09841 324 TFREAEISQLY----K---KDHPTYRALLEKRQTLEQERKRLNKRVSAM 365 (726)
T ss_pred HHHHHHHHHHh----c---ccCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 65554443322 1 122888888888888888877777766654
No 235
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=70.40 E-value=1.7e+02 Score=32.04 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=10.7
Q ss_pred cChhHHHHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVL 423 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l 423 (584)
.+|..+.++.|...+
T Consensus 280 ~hP~v~~l~~~i~~l 294 (444)
T TIGR03017 280 NHPQYKRAQAEINSL 294 (444)
T ss_pred CCcHHHHHHHHHHHH
Confidence 347777777777777
No 236
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=69.75 E-value=43 Score=32.48 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=56.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 214 DEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 214 ~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
...+..+-+.+..+++.|+..+..|++..+.+..++.++.+....++..-.+|...+..++...-...+
T Consensus 77 e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~ 145 (158)
T PF09744_consen 77 EEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLR 145 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 334455567888899999999999999999999999999999888888888888888887776666665
No 237
>KOG1937|consensus
Probab=69.54 E-value=2e+02 Score=32.51 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=31.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8072 332 LQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDW 371 (584)
Q Consensus 332 L~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~ 371 (584)
+..-+.|...-.-+..+++.++..+-..|++|...+...+
T Consensus 387 ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 387 YTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666777889999999999999999998883
No 238
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.83 E-value=40 Score=35.02 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=33.0
Q ss_pred HHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 249 ISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 249 ~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
+-.++..+..++.+|.+|+|++|+.+++++.+.+|-.-+-
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3466777799999999999999999999999988664433
No 239
>KOG2010|consensus
Probab=68.79 E-value=44 Score=36.01 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8072 419 AYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAAN 498 (584)
Q Consensus 419 Q~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~ 498 (584)
.++.=|+..+-+++|| +.++++++-++ +. |+.++..+|..|+--+.+|+++-.||+-.
T Consensus 123 EveekykkaMvsnaQL-------DNEKsnl~YqV------Dt-----LKD~LeE~eeqLaeS~Re~eek~kE~er~---- 180 (405)
T KOG2010|consen 123 EVEEKYKKAMVSNAQL-------DNEKNNLIYQV------DT-----LKDVLEEQEEQLAESYRENEEKSKELERQ---- 180 (405)
T ss_pred HHHHHHHHHHHHHHhh-------cccccceeeeH------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444455556666666 56778777775 22 78899999999999999999999999864
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCcccccCCCC
Q psy8072 499 EQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYRLHAGGSG 563 (584)
Q Consensus 499 Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~~~~~~~~~ 563 (584)
||+++.||-.+.+||.++..- .+.-.+ +-|+. +-..+|+|..+|---+|
T Consensus 181 ----------Kh~~s~Lq~~~~elKe~l~QR----deliee-~Gl~~-I~~~t~~g~~s~~~v~g 229 (405)
T KOG2010|consen 181 ----------KHMCSVLQHKMEELKEGLRQR----DELIEE-HGLVI-IPDGTPNGDVSHEPVAG 229 (405)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHH----HHHHHH-cCeEe-ccCCCCCcccccCcccc
Confidence 567999999999999888443 222222 22221 11246677777754443
No 240
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=68.52 E-value=2.6e+02 Score=33.31 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=33.9
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHH
Q psy8072 212 SLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELR 267 (584)
Q Consensus 212 d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~ 267 (584)
++.+......+.-..++.-|+..++.--.+.+.+...++..++.++.++.......
T Consensus 226 ~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~ 281 (786)
T PF05483_consen 226 DLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQH 281 (786)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555666666666666666667777777777777666665544433
No 241
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=68.18 E-value=90 Score=29.28 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q psy8072 431 KTQAQEFQSHLSASKNNQQRQIEMM 455 (584)
Q Consensus 431 k~qL~e~r~~Lq~~R~~~~~qie~m 455 (584)
-++|+..-.-|...|..+..||..+
T Consensus 49 ~kql~~vs~~l~~tKkhLsqRId~v 73 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKKHLSQRIDRV 73 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666444
No 242
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=67.91 E-value=87 Score=35.18 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 417 QSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 417 qsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~a 496 (584)
.++..+.-.+.......+.+++..|...|+.+.-- .-+..... .-.-|..|+.+|+..+.+...|+.- ..
T Consensus 241 ~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvl-----DP~~~a~~-~~~lI~~Le~qLa~~~aeL~~L~~~----~~ 310 (434)
T PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDI-----DPKETITA-IYQLIAGFETQLAEAKAEYAQLMVN----GL 310 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----ChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh----cC
Confidence 56666776666666777777777777777733211 11222122 3346778888888887777766442 11
Q ss_pred hcccCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 497 ANEQTGPINREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 497 a~Eq~g~i~~Emr~LisSlq~~i~~LksEv 526 (584)
...|.+.-++.=|.+|+.+|...++.+
T Consensus 311 ---p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 311 ---DQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 123666666666666666666655555
No 243
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=67.27 E-value=96 Score=27.95 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhH
Q psy8072 431 KTQAQEFQSHLSASKNNQQRQIEMMET 457 (584)
Q Consensus 431 k~qL~e~r~~Lq~~R~~~~~qie~mE~ 457 (584)
+.++...+..|.+-|..+.++.+.+..
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~ 32 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQ 32 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666667777666666544433
No 244
>KOG1916|consensus
Probab=66.73 E-value=3.2e+02 Score=33.75 Aligned_cols=150 Identities=18% Similarity=0.164 Sum_probs=81.2
Q ss_pred hhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy8072 371 WEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEY-KCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQ 449 (584)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Y-k~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~ 449 (584)
+|-|+++||-+-|------++ +++ +..+.-++|.....+ +..+.-+..|-|-.+-.-+=-+..+..+|+.=.-..
T Consensus 971 ~e~ti~~El~~tv~P~v~rs~-~p~---~~q~~~s~itkl~~~eg~~kenI~ql~KSknl~dtvar~i~~~~Qtsg~lQ~ 1046 (1283)
T KOG1916|consen 971 FEKTIKKELAKTVGPCVARSV-EPV---IEQTVSSAITKLFQREGIGKENINQLLKSKNLEDTVARQIQAQFQTSGPLQE 1046 (1283)
T ss_pred HHHHHHHHHHhhcchhhhhhh-HHH---HHHHHHHHHHHHHHhhchHHHHHHHHHhhccHHHHHHHHHHHHHhccchHHH
Confidence 445777877774421111111 111 222245566666666 555555555544333222222333333443311122
Q ss_pred HHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCC---chHHHHHHHHHHHHHHHHHHH
Q psy8072 450 RQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANE--QTG---PINREMRHLITSLQNHNKQIK 523 (584)
Q Consensus 450 ~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~E--q~g---~i~~Emr~LisSlq~~i~~Lk 523 (584)
..++.|++.-.-. -+.+.++..|+++.++.=..+|-. +|+.-...-- +++ +++..++-|+.+++.-++++.
T Consensus 1047 a~resm~SsviPafEKScqaMF~Qi~daF~~Gi~e~~~---q~~s~~~s~~qr~a~nrE~~~~ql~~L~~t~~sa~~~~~ 1123 (1283)
T KOG1916|consen 1047 ALRESMESSVIPAFEKSCQAMFQQIDDAFQKGIQEHTQ---QLISSASSVPQRQALNRELAEAQLNGLALTAASATEQGS 1123 (1283)
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCC
Confidence 3346676655544 444888999999999999998865 3333222212 222 788888888888887776666
Q ss_pred HHHH
Q psy8072 524 GEVN 527 (584)
Q Consensus 524 sEv~ 527 (584)
.++-
T Consensus 1124 ~pl~ 1127 (1283)
T KOG1916|consen 1124 NPLV 1127 (1283)
T ss_pred cchH
Confidence 5543
No 245
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=66.56 E-value=60 Score=27.22 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
|..++..||..++.+-.|.-.+-..+..+....+.....+.....+.+++..+++..++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555
No 246
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=65.41 E-value=91 Score=27.98 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHH
Q psy8072 335 DLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYK 414 (584)
Q Consensus 335 eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk 414 (584)
+....++.-+.-..|-..|+.+...+.+.+..|..+ |..+|. .|.+|+
T Consensus 9 qR~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~----------------------------l~~l~~----~s~ey~ 56 (101)
T PF07303_consen 9 QRQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSE----------------------------LKRLPP----GSQEYK 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHS-T----TSHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCC----CCcHHH
Confidence 455666777777888888899999999999999988 666666 667777
Q ss_pred HHHHHHHHHHHHH
Q psy8072 415 CLQSAYSVLYNEN 427 (584)
Q Consensus 415 ~LqsQ~s~l~~e~ 427 (584)
.+. ++..-|++.
T Consensus 57 ~i~-~I~~eY~k~ 68 (101)
T PF07303_consen 57 RIA-QILQEYNKK 68 (101)
T ss_dssp HHH----HHHHHH
T ss_pred HHH-HHHHHHHHH
Confidence 776 544444444
No 247
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=65.10 E-value=1.9e+02 Score=30.61 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 345 NRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 345 ~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.+|.|+-.+++++.++.-|++-|+.+
T Consensus 51 s~L~QIt~iQaeI~q~nlEielLkle 76 (277)
T PF15003_consen 51 SRLRQITNIQAEIDQLNLEIELLKLE 76 (277)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 57888999999999999999999987
No 248
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=64.98 E-value=1.5e+02 Score=29.34 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 417 QSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQK-KLRGEMMQLEDALSQIRKEYEMLRIEFETNL 495 (584)
Q Consensus 417 qsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~-~l~s~v~qlE~~LarvR~ere~L~~E~eq~~ 495 (584)
..|+..|-.|..+|+.-|++++.-|.-.=+.|+.++... ....+ .....+......+..+-.....-..|+....
T Consensus 69 n~qi~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l----~~~~k~~~~~~~~~~~~~~~~~~~~~~~kI~EM~~vM 144 (181)
T PF05769_consen 69 NRQIRQLQQENRELRQSLEEHQSALELIMSKYREQMSQL----MMASKFDDTEPYLEANEQLSKEVQSQAEKICEMAAVM 144 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345567788888889999999999888888777776322 11111 1222222334444444444444444555443
Q ss_pred hhcccCC-chHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 496 AANEQTG-PINREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 496 aa~Eq~g-~i~~Emr~LisSlq~~i~~LksEv 526 (584)
......+ ....+....|..|..+|..|..-+
T Consensus 145 ~~ai~~de~~~~~~qe~i~qL~~EN~~LRelL 176 (181)
T PF05769_consen 145 RKAIELDEENSQEEQEIIAQLETENKGLRELL 176 (181)
T ss_pred HHHHhcchhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 3322233 333566677777777777765544
No 249
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=64.91 E-value=2.3e+02 Score=31.50 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q psy8072 415 CLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQ 463 (584)
Q Consensus 415 ~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q 463 (584)
.|+++.-.||.++.++ +.....|+.-+++...+.+++-.-+++.|
T Consensus 183 Qlk~~~~~L~~r~~~i----eQ~~~~la~r~~a~q~r~~ela~r~aa~Q 227 (499)
T COG4372 183 QLKSQVLDLKLRSAQI----EQEAQNLATRANAAQARTEELARRAAAAQ 227 (499)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777787776553 22223345555555555555544444443
No 250
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.66 E-value=32 Score=38.27 Aligned_cols=98 Identities=20% Similarity=0.401 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
+.++..++..+..+..+.+.|...+...... ...+....+.+.+...+......|..++..++.++++...++......
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 411 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKL-KKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERSYKE 411 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3344445555555555555555555444432 113355667888888888899999999999999999888888887222
Q ss_pred ----hcCCCCCCcccccCCCCCc
Q psy8072 547 ----ERSPWPSGYRLHAGGSGFD 565 (584)
Q Consensus 547 ----~~s~~~~~~~~~~~~~~~~ 565 (584)
+....-+|+..|.|+..+-
T Consensus 412 ~~I~v~~~vypgv~i~i~~~~~~ 434 (451)
T PF03961_consen 412 ARIKVRKRVYPGVEIHIGNKSYK 434 (451)
T ss_pred eEEEECCEEECCEEEEECCEEEE
Confidence 2234667899999876543
No 251
>KOG0962|consensus
Probab=64.51 E-value=4e+02 Score=34.06 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=44.1
Q ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 406 VIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEY 484 (584)
Q Consensus 406 ~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~er 484 (584)
.+.....|+.|.+|.+++..++..+-.|.-+.......++-..+.... ...-+....+..++.++++...+.+.+-
T Consensus 1003 ~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~---~~l~se~~~~lg~~ke~e~~i~~~k~eL 1078 (1294)
T KOG0962|consen 1003 NLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEER---EKLSSEKNLLLGEMKQYESQIKKLKQEL 1078 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344457899999999999888888876665555333333322222211 1122223446667777777666655543
No 252
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.35 E-value=81 Score=26.42 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKV 280 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~ 280 (584)
+..|...+..+...+..-+...+.+..+-......+..+-.++.+|+.+++.+.-+|+..
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555555555555555554444455555555555555555555554443
No 253
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=64.09 E-value=3.7e+02 Score=33.53 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=5.9
Q ss_pred hhHHHHhHHHHHH
Q psy8072 329 LDDLQKDLEEAKE 341 (584)
Q Consensus 329 ~eeL~~eleE~k~ 341 (584)
+..+...++++..
T Consensus 532 l~~~~~~~~~~~~ 544 (1047)
T PRK10246 532 LDALEKEVKKLGE 544 (1047)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 254
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=64.03 E-value=1.3e+02 Score=29.78 Aligned_cols=63 Identities=19% Similarity=0.356 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~ 529 (584)
++..+..+..++..++.....|..+++..+...+.+. --.++-.-+..|+.++..|+.++..|
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~-eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESE-EREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556666655555554433331 11222223344455555555555544
No 255
>PRK10869 recombination and repair protein; Provisional
Probab=63.58 E-value=2.8e+02 Score=31.99 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=18.0
Q ss_pred HHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 242 YHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 242 hk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
++....+++.+...+...+....+...++|-+++.++++..
T Consensus 159 ~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 159 MRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 33333344333333344444444444455555554444443
No 256
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.57 E-value=3.1e+02 Score=32.57 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=24.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8072 252 LQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDK 286 (584)
Q Consensus 252 l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~K 286 (584)
+.++......-++-|..+|+++..+|..++.+++.
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~ 292 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNV 292 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666788888888888888888883333
No 257
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.57 E-value=1.5e+02 Score=31.58 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=28.0
Q ss_pred HHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 246 SLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 246 s~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
-.++.+-++.+.--++||.+|+.||-.++.|..+-++
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEEC 110 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEEC 110 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566789999999999999999888776
No 258
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=63.49 E-value=1.5e+02 Score=28.83 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy8072 431 KTQAQEFQSHLS 442 (584)
Q Consensus 431 k~qL~e~r~~Lq 442 (584)
++.+.+.+..++
T Consensus 57 ~a~~~eLr~el~ 68 (177)
T PF07798_consen 57 KAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 259
>KOG4677|consensus
Probab=63.05 E-value=2.7e+02 Score=31.58 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=34.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh------cccCC--chHHHHHHHHHH
Q psy8072 450 RQIEMMETEELMVQKKLRGEMMQLEDALSQIRK-------EYEMLRIEFETNLAA------NEQTG--PINREMRHLITS 514 (584)
Q Consensus 450 ~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~-------ere~L~~E~eq~~aa------~Eq~g--~i~~Emr~LisS 514 (584)
.++..||+.....+...++++..+....+-+-+ .|+-+.+|++-.... .-|++ +--.|++.|++-
T Consensus 337 s~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~ 416 (554)
T KOG4677|consen 337 SQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAAR 416 (554)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHH
Confidence 355555554444444445555544444443333 333344443322221 11223 445688999887
Q ss_pred HHHHH
Q psy8072 515 LQNHN 519 (584)
Q Consensus 515 lq~~i 519 (584)
|.+++
T Consensus 417 l~~r~ 421 (554)
T KOG4677|consen 417 LKLRA 421 (554)
T ss_pred HHHHh
Confidence 76664
No 260
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.71 E-value=54 Score=33.71 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHH
Q psy8072 219 EANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDD 272 (584)
Q Consensus 219 ~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee 272 (584)
+.+.+|..++..|+..+..++...+.+..+.+.|.....++.-++.+|+..+++
T Consensus 149 ~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 334444444444444444444444444444433333333333333333333333
No 261
>KOG0979|consensus
Probab=62.27 E-value=3.9e+02 Score=33.20 Aligned_cols=111 Identities=19% Similarity=0.329 Sum_probs=72.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHH
Q psy8072 166 LANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNL--TEQNTKLHAKYH 243 (584)
Q Consensus 166 L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~L--q~~~~~L~~khk 243 (584)
+-++.+.|+.-+..||..|.-+ .+.||+-|.-+. |++--+-.-..|..|..+. -.++..-|.+-.
T Consensus 118 ~iN~~a~t~s~i~elv~~fNIQ---i~NLCqFLpQDk----------V~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~ 184 (1072)
T KOG0979|consen 118 FINDSATTKSEIEELVAHFNIQ---IDNLCQFLPQDK----------VKEFARLSPIELLVETEKAIGAEELLQYHIELM 184 (1072)
T ss_pred eeccchhhhHHHHHHHHHHhcc---cCchhhhccHHH----------HHHHHcCChHHHHHHHHHhcCchhhHHHHHHHH
Confidence 3355677777888888777643 456666655432 2211111122333333332 223455666666
Q ss_pred HhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 244 SISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 244 ~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
++..+...+.+.++.....+..|+.+.+.+.-+.++.+.|..++..
T Consensus 185 ~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~ 230 (1072)
T KOG0979|consen 185 DLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSK 230 (1072)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888889999999999999999999999999999987766553
No 262
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=62.12 E-value=3.3e+02 Score=32.24 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETNLAANE--QTG-PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQK 542 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~E--q~g-~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~ 542 (584)
+-++..+...+.-++.+...|.--++++..+-. +.+ .-|.+|+.|++.+++.|..|--.-.-.|..+.....|+..
T Consensus 357 ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~ 435 (632)
T PF14817_consen 357 ELEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQE 435 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHH
Confidence 335555566666666666666666665554411 122 7789999999999999988877666666666655555544
No 263
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.89 E-value=1.9e+02 Score=29.53 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=20.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+.+.....+....+..--...+++.++...+..++..|+.+
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e 64 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLERE 64 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555555555555555555544
No 264
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.90 E-value=1e+02 Score=34.88 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEML 487 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L 487 (584)
+|.++..+..+..++++|-+.|
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444444444444444
No 265
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=60.40 E-value=1.9e+02 Score=29.03 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=47.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHhHHHH--------HHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 215 EAVREANIEIQTENRNLTEQNTKLHA---KYHSISLKI--------SELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 215 ~~l~~~n~~L~~E~~~Lq~~~~~L~~---khk~ls~e~--------~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
..|+..|..|+.+|+.|+.+|--|-- |-+.++.+- +.++..+...+.++++|+...+++.-+-....
T Consensus 58 R~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK 135 (195)
T PF10226_consen 58 RGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK 135 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 57888999999999999999866543 555566553 34677777778888877777666655544443
No 266
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=59.22 E-value=1.7e+02 Score=27.91 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC---------------------Cch-HHHHHHHHHHHHHHHHHHHHHH
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEFETNLAANEQT---------------------GPI-NREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~---------------------g~i-~~Emr~LisSlq~~i~~LksEv 526 (584)
.+.+++.+......+++...-+....++-.... +.+ -.|+..++..+.+|+..|.+-.
T Consensus 63 ~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~~hl~s~~~n~ 142 (160)
T PF13094_consen 63 YLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPELPQKSLLEASESRFAPTLCDEELLPLLKQLNKHLESMQNNL 142 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhccccccccccccccccccccccccccCcccchHHHHHHHHHHHHHHHHHHccH
Confidence 566666666666666666666655544431111 123 5799999999999999999988
Q ss_pred HHHHhhhHHHHHHHHHhhh
Q psy8072 527 NRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 527 ~R~K~k~kea~~e~~~lr~ 545 (584)
..+ +...-.|...++
T Consensus 143 ~~l----~~~~~~ie~~~~ 157 (160)
T PF13094_consen 143 QQL----KGLLEAIERSYA 157 (160)
T ss_pred HHH----HHHHHHHHHHHH
Confidence 776 555555554443
No 267
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.13 E-value=1.7e+02 Score=27.96 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 415 CLQSAYSVLYNENQLAKTQAQEF 437 (584)
Q Consensus 415 ~LqsQ~s~l~~e~~~lk~qL~e~ 437 (584)
+|+.+++.+..+.+++..+|+-.
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 268
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.08 E-value=2.2e+02 Score=29.22 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 465 KLRGEMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 465 ~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
.++..|..|+..+..++...+++.+.....++.
T Consensus 117 ~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~ 149 (225)
T COG1842 117 KLKKQLAALEQKIAELRAKKEALKARKAAAKAQ 149 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999998888774
No 269
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.75 E-value=87 Score=32.53 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=18.5
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 251 ELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 251 ~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.++.++..+++++.+.+.-++.+..||.++..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555556666666666666666666553
No 270
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.20 E-value=91 Score=36.35 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Q psy8072 260 ETEAAELRNQIDDLQYELSKVQSRNDKLENHLLE 293 (584)
Q Consensus 260 ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ 293 (584)
..++..+..+++.+.-+|....++.+.|+..|+.
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666655554
No 271
>PRK11519 tyrosine kinase; Provisional
Probab=58.15 E-value=1.9e+02 Score=34.30 Aligned_cols=112 Identities=13% Similarity=0.224 Sum_probs=56.4
Q ss_pred hhhhhcChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 404 ESVIVETTEYKC--LQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIR 481 (584)
Q Consensus 404 ee~I~~S~~Yk~--LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR 481 (584)
+..|..+-..|. .+.....+-++...++.+|+.+...|+..|..+.- +.. +...+..+ ..+..++.++..++
T Consensus 251 ~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~----vd~-~~ea~~~l-~~~~~l~~ql~~l~ 324 (719)
T PRK11519 251 RNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS----VDL-PLEAKAVL-DSMVNIDAQLNELT 324 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCc-hHHHHHHH-HHHHHHHHHHHHHH
Confidence 333433333333 35566677777777788888888888887764321 111 11111112 23445555555554
Q ss_pred HHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 482 KEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNR 528 (584)
Q Consensus 482 ~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R 528 (584)
.....|... ... .-|.+..++.-..+|+.++..+++++..
T Consensus 325 ~~~~~l~~~----y~~---~hP~v~~l~~~~~~L~~~~~~l~~~~~~ 364 (719)
T PRK11519 325 FKEAEISKL----YTK---EHPAYRTLLEKRKALEDEKAKLNGRVTA 364 (719)
T ss_pred HHHHHHHHH----hcc---cCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444333221 110 1155555555556666666665554443
No 272
>KOG0980|consensus
Probab=58.07 E-value=4.3e+02 Score=32.38 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=19.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLE 293 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ 293 (584)
...+..+..|.+++++.+...++++-..++|...++.
T Consensus 361 ~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq 397 (980)
T KOG0980|consen 361 EQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ 397 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544443
No 273
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.79 E-value=1.2e+02 Score=27.43 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLL 292 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la 292 (584)
|...+.-|...+-.=|++...+ .+.+-..++.+..+..++|.+.+.-....+|+.-|...+.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L-------~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAEL-------KEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444 4444777888888888888888888888888877776554
No 274
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.56 E-value=1.6e+02 Score=27.36 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=30.9
Q ss_pred CChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 402 LPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSH 440 (584)
Q Consensus 402 l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~ 440 (584)
+|-++=.-...|..|+.+++.++-+..++.++|.+...-
T Consensus 4 lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~a 42 (119)
T COG1382 4 LPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKA 42 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556789999999999999999998888776544
No 275
>KOG2264|consensus
Probab=57.49 E-value=53 Score=37.92 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
-+....|...|+..-.+|+....++-.++.+++..+...+.++.+|+++++.++-.+++++.+.
T Consensus 88 ~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3333444445555555555555566666666666668888888888888888888887777644
No 276
>KOG2391|consensus
Probab=57.24 E-value=1.5e+02 Score=32.24 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8072 431 KTQAQEFQSHLSASKNNQQRQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQ 500 (584)
Q Consensus 431 k~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq 500 (584)
...+++.-..++++-.+..|+ .+|+.. +++|+.++..||.+++.+-+..|.|-...++++.+-+.
T Consensus 220 R~r~eeeme~~~aeq~slkRt-----~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRT-----EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 455555556677777777777 445555 77799999999999999999999999999997665443
No 277
>PRK11519 tyrosine kinase; Provisional
Probab=56.30 E-value=4.1e+02 Score=31.57 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=23.3
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8072 254 DAVNGKETEAAELRNQIDDLQYELSKVQSRNDK 286 (584)
Q Consensus 254 d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~K 286 (584)
++....+.-+.=|+.+++++..+|+.++++++.
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777888888888888888884333
No 278
>KOG2991|consensus
Probab=56.03 E-value=2.7e+02 Score=29.38 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=50.3
Q ss_pred hhhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhh
Q psy8072 328 KLDDLQKDLEEAKE-LANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESV 406 (584)
Q Consensus 328 k~eeL~~eleE~k~-LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~ 406 (584)
|..-|..+.+|+=. .++-|+.+|+--..=.+.-..|+-.-+.. |+|.+..|+++|
T Consensus 218 KCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~e------------------------L~dfm~eLdedV 273 (330)
T KOG2991|consen 218 KCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEE------------------------LYDFMEELDEDV 273 (330)
T ss_pred HHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHH------------------------HHHHHHHHHHHH
Confidence 45666666666543 45678887765444333333444444444 555566677777
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 407 IVETTEYKCLQSAYSVLYNENQLAKTQAQ 435 (584)
Q Consensus 407 I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~ 435 (584)
=..-...-.||.++..-.+||.+|+..+.
T Consensus 274 EgmqsTiliLQq~Lketr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 274 EGMQSTILILQQKLKETRKEIQRLKKGLE 302 (330)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555566677777777777777766553
No 279
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=55.94 E-value=56 Score=26.76 Aligned_cols=54 Identities=22% Similarity=0.264 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8072 478 SQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKET 536 (584)
Q Consensus 478 arvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea 536 (584)
.+++.-++.+..+.+++++. -..++.+++.|+.+.. ....-.++..+...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~n~~~---K~~Li~~~~~l~~~~d--~~~~~~~~k~l~~~Wk~i 69 (77)
T PF03993_consen 16 DRRKEFFEEQDAEREENLEK---KEALIEEAEALAESED--WKEAAEEIKELQQEWKEI 69 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHc
Confidence 56666777777788877774 4489999999988766 666666676676666654
No 280
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=55.89 E-value=2e+02 Score=27.94 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv 526 (584)
.-++.-+...-.++|.-||+|+..+.....-=+-+......|...++=|...+..+-..+
T Consensus 90 Q~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~ 149 (159)
T PF05384_consen 90 QVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQI 149 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334555555666777788888777665544322233444444444444444444443333
No 281
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=55.74 E-value=3.1e+02 Score=29.98 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 506 REMRHLITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 506 ~Emr~LisSlq~~i~~LksEv~R~ 529 (584)
-|=+.++..+|.-|+.|++-|+.+
T Consensus 190 ~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 190 VEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHH
Confidence 355788999999999999988764
No 282
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=55.71 E-value=75 Score=25.80 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHH
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQY 275 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~ 275 (584)
+..|-..+..|..|.-.|+.++..++..+.....|..+....||....
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 556666667777777777777777777777777777777777766543
No 283
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.52 E-value=3.3e+02 Score=30.30 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHH
Q psy8072 500 QTGPINREMRHLITSLQNHNKQIK 523 (584)
Q Consensus 500 q~g~i~~Emr~LisSlq~~i~~Lk 523 (584)
|+-+-.++|...++++|+||..|+
T Consensus 295 qs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 295 QSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444677899999999999999999
No 284
>KOG4302|consensus
Probab=54.89 E-value=4.3e+02 Score=31.41 Aligned_cols=199 Identities=19% Similarity=0.198 Sum_probs=96.4
Q ss_pred HHHHhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHH
Q psy8072 149 SFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTEN 228 (584)
Q Consensus 149 ~FL~~Lss~d~~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~ 228 (584)
.+|..| ..++-+-....+..+....++|...+.........|+..|+.....- ..+.-.+.-|+..-..+....
T Consensus 39 ~~l~~l----e~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~--~~~~k~e~tLke~l~~l~~~l 112 (660)
T KOG4302|consen 39 KKLLRL----EQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIG--EISDKIEGTLKEQLESLKPYL 112 (660)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc--ccccccCccHHHHHHHHHHHH
Confidence 455555 23444445566777888888999999999999999999998864211 000011112222222233333
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhh---------------hhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH---HH
Q psy8072 229 RNLTEQNTKLHAKYHSISLKISELQ---------------DAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE---NH 290 (584)
Q Consensus 229 ~~Lq~~~~~L~~khk~ls~e~~~l~---------------d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~---~~ 290 (584)
.-|+.+.+.=-+.++++..+++.+- |.......++.++++.|-+++.++..=-+++..+. ..
T Consensus 113 e~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~ 192 (660)
T KOG4302|consen 113 EGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKS 192 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333322 23333346666777777777665543333222222 11
Q ss_pred HHHHHHHhhhhhccccCCCCCCCCCCC--CCC--CccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 291 LLEATEKVKLCQQMHTEDGKEKDVIKP--EET--MSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREA 360 (584)
Q Consensus 291 la~ale~~~s~~~~~~~~~~~~~~~~p--~~g--~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l 360 (584)
|...| |. .-..+...-.+.. .++ +..++..-+.-|..-+..+++.-..|+..|+.|......|
T Consensus 193 l~~~L-----g~--~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~L 259 (660)
T KOG4302|consen 193 LCSVL-----GL--DFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLEL 259 (660)
T ss_pred HHHHh-----CC--CcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11212 11 1110000000000 011 1223333466666777777777888888877777766555
No 285
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.78 E-value=1.7e+02 Score=26.75 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy8072 352 KLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 352 ~L~~e~~~l~~e~~~Lk~~ 370 (584)
.++..+..|...++..|..
T Consensus 13 el~n~La~Le~slE~~K~S 31 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTS 31 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3556677777777777766
No 286
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=54.59 E-value=1.4e+02 Score=32.61 Aligned_cols=109 Identities=22% Similarity=0.345 Sum_probs=56.2
Q ss_pred ChhhhhcChhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8072 403 PESVIVETTEYKCLQSAYSVL------YNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDA 476 (584)
Q Consensus 403 ~ee~I~~S~~Yk~LqsQ~s~l------~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~ 476 (584)
+.+++.....|+.|-..+..| |++...+..++..++..|....+.- |+ .-.+.+
T Consensus 25 ~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~e-----------------m~---ema~~E 84 (363)
T COG0216 25 DPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPE-----------------MR---EMAEEE 84 (363)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH-----------------HH---HHHHHH
Confidence 455788888888886655544 3444444445544444444333211 11 112344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 477 LSQIRKEYEMLRIEFETNLAANEQTG--PINREMRHLITSLQNHNKQIKGEVNRYKRKY 533 (584)
Q Consensus 477 LarvR~ere~L~~E~eq~~aa~Eq~g--~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ 533 (584)
+..+....+.|..++...+--.+... +++=|+|.=. ==++-.---+.+-|.=.+|
T Consensus 85 i~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagt--GGdEAalFagDLfrMY~rY 141 (363)
T COG0216 85 IKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGT--GGDEAALFAGDLFRMYSRY 141 (363)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCC--CchHHHHHHHHHHHHHHHH
Confidence 55566667777777777776433332 6666666422 1223333445555543333
No 287
>KOG3850|consensus
Probab=54.51 E-value=3.4e+02 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 344 NNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 344 ~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+.=+.||++..+-+..|....+.||.+
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~ 289 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQ 289 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777888888888877
No 288
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=54.38 E-value=4.9e+02 Score=31.93 Aligned_cols=261 Identities=19% Similarity=0.176 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHH-------HHHHHHHHHHhHHHhhHHHHHH
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQID-------DLQYELSKVQSRNDKLENHLLE 293 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLe-------e~~~eL~k~~rr~~KL~~~la~ 293 (584)
...+...-..++..++.+.+++..+.-.+..-.+...-.+++..++-.++- +...++--+.+-+.++.++.++
T Consensus 552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~E 631 (984)
T COG4717 552 QSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAE 631 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888999999999988888886666665555555555543321 1233333334333344444444
Q ss_pred HHHHhhh------hh--ccccCCCCCCCCCCCCCCCccccc--hh-hhHHHHhHHHHHHHH---HHHHHHHH-HHHHHHH
Q psy8072 294 ATEKVKL------CQ--QMHTEDGKEKDVIKPEETMSNVSQ--KK-LDDLQKDLEEAKELA---NNRLQELD-KLHLQHR 358 (584)
Q Consensus 294 ale~~~s------~~--~~~~~~~~~~~~~~p~~g~~~~~~--~k-~eeL~~eleE~k~LA---~~Rl~ELe-~L~~e~~ 358 (584)
-.-++.. .+ .+.|-.+.. -+..+..+... ++ .-+.+...|+++--+ --|..||. .|+++..
T Consensus 632 L~~q~~~L~ee~~af~~~v~~l~~~~----e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~ 707 (984)
T COG4717 632 LTHQVARLREEQAAFEERVEGLLAVL----EAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELE 707 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh----hcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3322211 00 011111000 10111111110 11 223333344444312 23566666 6677766
Q ss_pred HHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy8072 359 EALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEF- 437 (584)
Q Consensus 359 ~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~- 437 (584)
.-.+++.+|=.- .|..+ -+++...-..|+.+++-.+.+ ..+.++++..
T Consensus 708 ~~~kei~dLfd~--~~~~~-------------------------ed~F~e~A~~~qq~~q~~srl----~~~~aql~~v~ 756 (984)
T COG4717 708 LHRKEILDLFDC--GTADT-------------------------EDAFREAAREEQQLTQRESRL----ESLEAQLEGVA 756 (984)
T ss_pred HHHHHHHHHHhh--cccCc-------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCC
Confidence 667777766443 11222 344555556666665544433 5556666521
Q ss_pred --HHHHHHhHHH------HHHHHH-HHh-----HHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8072 438 --QSHLSASKNN------QQRQIE-MME-----TEELMVQ-KKLRGEMMQLE--DALSQIRKEYEMLRIEFETNLAANEQ 500 (584)
Q Consensus 438 --r~~Lq~~R~~------~~~qie-~mE-----~~E~~~q-~~l~s~v~qlE--~~LarvR~ere~L~~E~eq~~aa~Eq 500 (584)
+-.|.+.=+. -....| .++ -.|...+ ..+-.+|.++| .+++-+|..|++|...+++.-..
T Consensus 757 ~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~--- 833 (984)
T COG4717 757 AEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARK--- 833 (984)
T ss_pred chhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH---
Confidence 1111111000 000001 110 0222221 11444555555 35677777888887777775544
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q psy8072 501 TGPINREMRHLITSLQNHNKQIK 523 (584)
Q Consensus 501 ~g~i~~Emr~LisSlq~~i~~Lk 523 (584)
|..++....-+++.|..++
T Consensus 834 ----Wasl~~~~~vl~e~l~~~k 852 (984)
T COG4717 834 ----WASLRLAVQVLEEALRLFK 852 (984)
T ss_pred ----HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777665
No 289
>PRK00846 hypothetical protein; Provisional
Probab=54.15 E-value=1e+02 Score=26.58 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=32.8
Q ss_pred hHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhh
Q psy8072 245 ISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKL 300 (584)
Q Consensus 245 ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s 300 (584)
++..-..+.+.+..+++++.-.+..+|++-..+-+..+.+++|...+.-..++++.
T Consensus 4 ~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 4 LSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666666666666666666666666666555444444444
No 290
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.15 E-value=49 Score=25.51 Aligned_cols=40 Identities=30% Similarity=0.645 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 472 QLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRK 532 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k 532 (584)
|+|.+..-++..||.|..+++- |..++..|++||.+++.+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~---------------------L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDS---------------------LKKENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHh
Confidence 4666666666666666666554 344566666666666544
No 291
>KOG0993|consensus
Probab=54.03 E-value=3.6e+02 Score=30.26 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q psy8072 422 VLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMET 457 (584)
Q Consensus 422 ~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~ 457 (584)
+|.++|..|+.+|++.+..-+..+-.+.-.++....
T Consensus 438 ~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~ 473 (542)
T KOG0993|consen 438 DLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSN 473 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777888887776655555544444444333
No 292
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.75 E-value=42 Score=25.85 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFET 493 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq 493 (584)
++....|-.+...+.+|.+.|++++..
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 293
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.65 E-value=4.8e+02 Score=31.60 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=18.4
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhcCC
Q psy8072 525 EVNRYKRKYKETSAEIQKVRISERSP 550 (584)
Q Consensus 525 Ev~R~K~k~kea~~e~~~lr~~~~s~ 550 (584)
|+..-=.|+-|-|-=|..|-.+.+|.
T Consensus 734 EiaaAA~KLAECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444456677777788898898883
No 294
>KOG2391|consensus
Probab=53.45 E-value=68 Score=34.84 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy8072 485 EMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQK 542 (584)
Q Consensus 485 e~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~ 542 (584)
+.+.++++..++-.|.-.....||+.++.+|.-++..|+..+.=|++|.+||..+...
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 3344444444443222335677888899999999999999999999999997776654
No 295
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.44 E-value=89 Score=33.87 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
..+|...|+.....|++.|+.|..++.++....+.--+.+..-+.++.++...+.+..
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466788888888888899998888877777766666666666666666666666663
No 296
>PRK10780 periplasmic chaperone; Provisional
Probab=52.71 E-value=2.2e+02 Score=27.31 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=30.2
Q ss_pred ChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy8072 403 PESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQ 451 (584)
Q Consensus 403 ~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~q 451 (584)
++.++.+++.|+.++.+++.. ......+|+..+..++.....+.+.
T Consensus 31 ~q~il~~~p~~k~~~~~le~~---~~~~q~el~~~~~elq~~~~~~q~~ 76 (165)
T PRK10780 31 MGSIFQQVPQRTGVSKQLENE---FKGRASELQRMETDLQAKMQKLQRD 76 (165)
T ss_pred HHHHHHHCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356888999999887766644 4444666666666666666555554
No 297
>KOG1850|consensus
Probab=52.16 E-value=3.5e+02 Score=29.47 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQ 541 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~ 541 (584)
++.+.|..|..--+.|-.=--||...++. +.....-|+.=++-..++|..++-|.-=||.||..+..-+-
T Consensus 212 ~~~~~e~qlK~ql~lY~aKyeefq~tl~K---SNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL 281 (391)
T KOG1850|consen 212 EMKQVEGQLKEQLALYMAKYEEFQTTLAK---SNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVL 281 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55566666666666777777788888887 65666666777777788999999999999999888765543
No 298
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.10 E-value=1.8e+02 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8072 514 SLQNHNKQIKGEVNRYKRKYKETSAEIQKVR 544 (584)
Q Consensus 514 Slq~~i~~LksEv~R~K~k~kea~~e~~~lr 544 (584)
+..+.+..++.||..+..=++.=..++..||
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555566666666555566667777665
No 299
>KOG0249|consensus
Probab=52.04 E-value=5e+02 Score=31.27 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=29.6
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEAT 295 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~al 295 (584)
+-..+...++...+.++.-++.++.--..+|+....++-
T Consensus 24 a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~ 62 (916)
T KOG0249|consen 24 APLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAM 62 (916)
T ss_pred CCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHH
Confidence 666778888888999999888888877777776554433
No 300
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.67 E-value=3.3e+02 Score=32.94 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=10.0
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHHH
Q psy8072 211 PSLDEAVREANIEIQTENRNLTEQNT 236 (584)
Q Consensus 211 ~d~~~~l~~~n~~L~~E~~~Lq~~~~ 236 (584)
++++..|..+...+..-...++..+.
T Consensus 147 d~aS~eL~~iR~~~~~~~~~i~~~l~ 172 (782)
T PRK00409 147 DSASEKLRGIRRQLRRKKSRIREKLE 172 (782)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333333333
No 301
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=51.58 E-value=2e+02 Score=26.51 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 465 KLRGEMMQLEDALSQIRKEYEML-RIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 465 ~l~s~v~qlE~~LarvR~ere~L-~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
.|+-+|.+||.+|.+++..+++- .+|+|.=+.. +..|++. ..+|-..+.|-..++-|+...+.--
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkql------y~eElk~--------r~SLs~kL~ktnerLaevstkLl~E 69 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQL------YLEELKL--------RKSLSNKLNKTNERLAEVSTKLLVE 69 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHH------HHHHHHH--------HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46678999999999999777777 8888877665 5566654 4567788889999999999999988
Q ss_pred hhhhcC
Q psy8072 544 RISERS 549 (584)
Q Consensus 544 r~~~~s 549 (584)
+.+..|
T Consensus 70 keq~rs 75 (111)
T PF12001_consen 70 KEQNRS 75 (111)
T ss_pred HHhccc
Confidence 888666
No 302
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.50 E-value=2.1e+02 Score=26.81 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=23.6
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+-+|-..++.....-..=...+.++..++..+...++.|+.+
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~ 81 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQ 81 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345555555555555555555556666666666666666655
No 303
>KOG1962|consensus
Probab=51.45 E-value=95 Score=31.73 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 231 LTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 231 Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
|.+..+++.++-..+..++++.+.++...+.+...|+-|.|+.+.|++..-...++|..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44555555555566666666666777777777777888888877777777665555544
No 304
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.09 E-value=3.3e+02 Score=32.92 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=4.3
Q ss_pred HHHHHHHHHhh
Q psy8072 534 KETSAEIQKVR 544 (584)
Q Consensus 534 kea~~e~~~lr 544 (584)
+++...+.+++
T Consensus 610 ~~~~~~l~~~~ 620 (782)
T PRK00409 610 IEARKRLNKAN 620 (782)
T ss_pred HHHHHHHHHhh
Confidence 33333344433
No 305
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=51.04 E-value=1.3e+02 Score=34.98 Aligned_cols=88 Identities=17% Similarity=0.303 Sum_probs=56.2
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIV 408 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~ 408 (584)
.++++..+++...--..|..+|.. .++.....+.+..++-. . ++
T Consensus 166 ~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~---~------------------------ik-------- 209 (555)
T TIGR03545 166 AEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKK---D------------------------IK-------- 209 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhc---c------------------------CC--------
Confidence 578888888888888888888864 55666666666666543 1 22
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQI 452 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qi 452 (584)
+=..+...+.++..|.+++...+..+..+...|+..+.....++
T Consensus 210 ~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~ 253 (555)
T TIGR03545 210 NPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADL 253 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11234455556666666665556666666666677666555554
No 306
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.97 E-value=1.6e+02 Score=33.51 Aligned_cols=61 Identities=30% Similarity=0.458 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHL 291 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~l 291 (584)
..+|+.|..+...|+.+...+...++ ...+++-.++..+.+.+..+....+..++.|..+|
T Consensus 79 ~~~N~~l~~eN~~L~~r~~~id~~i~------~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 79 ISENEALKAENERLQKREQSIDQQIQ------QAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443 23334445555566666666666665555555544
No 307
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.82 E-value=3.5e+02 Score=32.67 Aligned_cols=12 Identities=8% Similarity=0.219 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhh
Q psy8072 534 KETSAEIQKVRI 545 (584)
Q Consensus 534 kea~~e~~~lr~ 545 (584)
+++..++..++.
T Consensus 599 ~~~~~~~~~~~~ 610 (771)
T TIGR01069 599 IKSIEDLVKLKE 610 (771)
T ss_pred HHHHHHHHHHHH
Confidence 334344444433
No 308
>KOG4360|consensus
Probab=50.69 E-value=4.5e+02 Score=30.35 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=32.8
Q ss_pred HHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q psy8072 240 AKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLL 292 (584)
Q Consensus 240 ~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la 292 (584)
.+-..++.+++..-+.+++...++.-|-++|-|++.++-.++....-+..||-
T Consensus 212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666777777777777777777666664445555554
No 309
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=50.64 E-value=1.7e+02 Score=30.39 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 464 KKLRGEMMQLEDALSQIRKEYEMLRIEFET 493 (584)
Q Consensus 464 ~~l~s~v~qlE~~LarvR~ere~L~~E~eq 493 (584)
..+..+...|+..++++..+-+-|+.||+-
T Consensus 217 ~~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 217 QHYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334445555555566666666667776653
No 310
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=50.60 E-value=91 Score=33.55 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
..+....+..+...+.+-..+..++..++........+..+|+.+++..+..|..+.+-+.-|
T Consensus 227 ~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 227 EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
Confidence 334444555555666666677777777777778888888888888888888888888655333
No 311
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.55 E-value=1.5e+02 Score=25.09 Aligned_cols=54 Identities=24% Similarity=0.393 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
+..|+.+-.+|-.+...+..-+..|+....-.+..+..+...+++...++...+
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444444444444433333334444444444444444444443333
No 312
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=50.04 E-value=1.4e+02 Score=24.99 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=8.6
Q ss_pred hHHHHHHhhhhhhhchHHHHHH
Q psy8072 245 ISLKISELQDAVNGKETEAAEL 266 (584)
Q Consensus 245 ls~e~~~l~d~~~~~ese~~eL 266 (584)
+..+-..+.++...+.++|+-|
T Consensus 33 ~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 33 WREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444433
No 313
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.74 E-value=2.5e+02 Score=32.94 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNL 495 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~ 495 (584)
++.+|..|+..|..-....++|..+|++.+
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777766
No 314
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=48.73 E-value=1.7e+02 Score=24.90 Aligned_cols=67 Identities=22% Similarity=0.311 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhhcccCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8072 472 QLEDALSQIRKEYEMLRIEF---ETNLAANEQTG-PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQ 541 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~---eq~~aa~Eq~g-~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~ 541 (584)
..|..+.++++|==.|..++ ++++.. .+ ..+.++-.----|.-.+..|+.|+.+++..+++|..++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~---~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQK---LGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777766665554 344442 33 344443333334778888888888888888888887763
No 315
>KOG1899|consensus
Probab=48.37 E-value=3.8e+02 Score=31.73 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 516 QNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 516 q~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
+...++|.+|-.-|--|+|-+..+++.||+.
T Consensus 216 ~~kv~e~~~erlqye~klkstk~e~a~L~Eq 246 (861)
T KOG1899|consen 216 QSKVGEVVQERLQYETKLKSTKGEMAPLREQ 246 (861)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence 3444555666666666666666666666654
No 316
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=48.24 E-value=44 Score=27.96 Aligned_cols=36 Identities=17% Similarity=0.414 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCcc
Q psy8072 517 NHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYR 556 (584)
Q Consensus 517 ~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~~ 556 (584)
+.+..|+.+|.++++++-++..++|-|=++ .|.||.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd----LP~~w~ 37 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED----LPTNWE 37 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TTTTGG
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchhHH
Confidence 467889999999999999999999999554 677664
No 317
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.22 E-value=3.6e+02 Score=28.49 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..+-...++.++.....+.-++..+..++.....++.+++.+++....++.+.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444
No 318
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=48.09 E-value=2.2e+02 Score=29.81 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 260 ETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 260 ese~~eL~~qLee~~~eL~k~~r 282 (584)
..+++++..+++.++.++...+.
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~ 156 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEK 156 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 319
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.88 E-value=3.8e+02 Score=28.73 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q psy8072 350 LDKLHLQHREALKDVEKLKMDWE 372 (584)
Q Consensus 350 Le~L~~e~~~l~~e~~~Lk~~~~ 372 (584)
|.+|-.++..|+.+|.+||.+|+
T Consensus 221 LkKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777778888888888743
No 320
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.77 E-value=1.5e+02 Score=28.47 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8072 262 EAAELRNQIDDLQYELS 278 (584)
Q Consensus 262 e~~eL~~qLee~~~eL~ 278 (584)
.+.+|+.++++++.++.
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45555555555555555
No 321
>KOG1103|consensus
Probab=47.60 E-value=4.2e+02 Score=29.15 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH-HhhHHHHH
Q psy8072 221 NIEIQTENRNLTEQ----NTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN-DKLENHLL 292 (584)
Q Consensus 221 n~~L~~E~~~Lq~~----~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~-~KL~~~la 292 (584)
-+.+...|++.|.- +..+..||+.+..++ ...+....+-..+=||+.+-|+|-|.++ +.++.++.
T Consensus 91 L~~mM~qcKnmQe~~~s~LaAaE~khrKli~dL-------E~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~ 160 (561)
T KOG1103|consen 91 LDKMMAQCKNMQENAASLLAAAEKKHRKLIKDL-------EADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIE 160 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777754 445566888888877 4445555555667788888888888855 33454443
No 322
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=46.87 E-value=4e+02 Score=28.65 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy8072 229 RNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSK 279 (584)
Q Consensus 229 ~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k 279 (584)
..-..++..|-+++..+..++..=...-.++++++.-....|..+--+.+.
T Consensus 59 ~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dq 109 (305)
T PF14915_consen 59 FQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQ 109 (305)
T ss_pred HHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444555555555555333333444444444444444444444443
No 323
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.61 E-value=1e+02 Score=30.10 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
.+..|+..|+.++..|+.+++.+..++ ..+..++..++..++.+..=++++|
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~-------~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKEL-------EKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665555555555554 3333333444444444444444444
No 324
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.58 E-value=75 Score=26.38 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=22.4
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHH
Q psy8072 254 DAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATE 296 (584)
Q Consensus 254 d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale 296 (584)
+.+..+++++.-....++++..-+-.-.+.+++|...+....+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555544444333
No 325
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.52 E-value=4.3e+02 Score=28.97 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=16.5
Q ss_pred HhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 244 SISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 244 ~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.+..+++..++.++..+.+.+++.+-+.+.+.+|.++--
T Consensus 270 ~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 270 PLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444333
No 326
>PF13166 AAA_13: AAA domain
Probab=46.44 E-value=5.4e+02 Score=30.07 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=6.7
Q ss_pred CCCcccccCC
Q psy8072 552 PSGYRLHAGG 561 (584)
Q Consensus 552 ~~~~~~~~~~ 561 (584)
-.||.++..|
T Consensus 484 ~~~y~l~~~~ 493 (712)
T PF13166_consen 484 DKGYKLQRKG 493 (712)
T ss_pred CCeEEEEECC
Confidence 4577777755
No 327
>PLN02939 transferase, transferring glycosyl groups
Probab=46.43 E-value=6.8e+02 Score=31.22 Aligned_cols=198 Identities=15% Similarity=0.250 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhc-----------ChhHHH
Q psy8072 347 LQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVE-----------TTEYKC 415 (584)
Q Consensus 347 l~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~-----------S~~Yk~ 415 (584)
+.+|++...|...|+.++.-|.|.|--| | -+..+++.--.=+.-+..||..+.-+.+.. +.++-.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSET--D--ARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDV 230 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhh--h--hhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHH
Confidence 3455666677777888888888773211 1 111111111000001223333322222221 456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHhHHHHHHHHH----------------------HH
Q psy8072 416 LQSAYSVLYNENQLAKTQAQEFQSH------LSASKNNQQRQIEMMETEELMVQKK----------------------LR 467 (584)
Q Consensus 416 LqsQ~s~l~~e~~~lk~qL~e~r~~------Lq~~R~~~~~qie~mE~~E~~~q~~----------------------l~ 467 (584)
|+...-.|-+.+.-+|+++.+.... |..+|.-...-+.++|+-=+..|.. ++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 231 LKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 7777777777777778877655543 4444444333333333211111100 00
Q ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy8072 468 G------EMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINR----EMRHLITSLQNHNKQIKGEVNRYKRKYKETS 537 (584)
Q Consensus 468 s------~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~----Emr~LisSlq~~i~~LksEv~R~K~k~kea~ 537 (584)
. ..+-.=+..+-+|+.-|.|+.-++++... .-.-..++ .++-+=+-++.....+.++++-|..-.++-+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (977)
T PLN02939 311 RATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVS-KFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQ 389 (977)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHh-hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 0 01111223455677788888888877663 11112222 2344455677778899999999999999999
Q ss_pred HHHHHhhhhhcC
Q psy8072 538 AEIQKVRISERS 549 (584)
Q Consensus 538 ~e~~~lr~~~~s 549 (584)
.-+.+|..+.+.
T Consensus 390 ~~~~~~~~~~~~ 401 (977)
T PLN02939 390 DTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHhhhhc
Confidence 999999988766
No 328
>PRK09343 prefoldin subunit beta; Provisional
Probab=46.39 E-value=2.4e+02 Score=25.93 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=53.9
Q ss_pred cCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHH-HH-HHHHHH----hHHH----HHHHHH-H
Q psy8072 401 QLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSH---LSASKNN-QQ-RQIEMM----ETEE----LMVQKK-L 466 (584)
Q Consensus 401 ~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~---Lq~~R~~-~~-~qie~m----E~~E----~~~q~~-l 466 (584)
++|.++-.....|+.++.++..+......+..++.+...- |...-.. -. .-+=-| .-+| +..+.+ +
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 3566666677889999999999988888887777665444 2221110 00 000000 1122 222222 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~~a 496 (584)
+.+|..+|.....+++....++..|.+.++
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666555
No 329
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=46.31 E-value=3.5e+02 Score=27.84 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhH
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSR 283 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr 283 (584)
.+.+.-+.|..|-...-+++-.+|.....|..-+...++.....+..+.++.+++.-+..++++.++-
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566666666666666666666666666666677766666666666666653
No 330
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=46.20 E-value=3.7e+02 Score=28.09 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQ-----TGPINREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq-----~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
+..++..++.++..+..+.+.+..+..-....... .||...+-+..+...+.+...+++++.....++.
T Consensus 140 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 140 LDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444444444444444444333333322111 2399999999999999888888888776665555
No 331
>KOG4593|consensus
Probab=45.89 E-value=6e+02 Score=30.39 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy8072 463 QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQT 501 (584)
Q Consensus 463 q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~ 501 (584)
...+.+.+-.++.+|.++-..+--+..+......+.+-.
T Consensus 379 ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~ 417 (716)
T KOG4593|consen 379 ITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGS 417 (716)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444677777777777777766666666555555544433
No 332
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=44.79 E-value=3e+02 Score=26.69 Aligned_cols=65 Identities=15% Similarity=0.311 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8072 463 QKKLRGEMMQLEDALSQIRKE-YEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKET 536 (584)
Q Consensus 463 q~~l~s~v~qlE~~LarvR~e-re~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea 536 (584)
...++.++..-.....+++.+ ++.+.++.+...++ ...++ ..++..+|.-|...+..+|+.++|.
T Consensus 64 ~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~------~ea~L---~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (155)
T PRK06569 64 NKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKN------LEQDL---KNSINQNIEDINLAAKQFRTNKSEA 129 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444777888888888889888 99999988887776 33333 3444556666666666666666654
No 333
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=44.21 E-value=3.6e+02 Score=27.44 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 505 NREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 505 ~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
..+...-+.........+..++.+-|+.+=.-...|--++..
T Consensus 121 ~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 121 LEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceee
Confidence 344445555555666667777766666666666667777543
No 334
>KOG3091|consensus
Probab=44.21 E-value=5.5e+02 Score=29.48 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=37.5
Q ss_pred HHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHh
Q psy8072 248 KISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKV 298 (584)
Q Consensus 248 e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~ 298 (584)
+...+++.+.....++.+|+..=-++...++++++|...|..++..++-++
T Consensus 349 ~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 349 EVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666777777888887777788888999998888888777766543
No 335
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=44.20 E-value=2.6e+02 Score=25.84 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=57.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 215 EAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 215 ~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
+.....-..+..+...++..+.+++.-+..-..+...+.......+.++..++.+++++..+|..++.
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777888888888888888888888899999999999999999999999999999999887
No 336
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=44.18 E-value=4.9e+02 Score=28.95 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 513 TSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 513 sSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
+.....+...+.++...+-.+..+...+....-.
T Consensus 287 ~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~ 320 (457)
T TIGR01000 287 AKVKQEITDLNQKLLELESKIKSLKEDSQKGVIK 320 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 3445555556666666665556666555544433
No 337
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.14 E-value=2.4e+02 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLS 442 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq 442 (584)
...|+.++.++..+......+..++.+...-+.
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~ 41 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALE 41 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888888777776665533
No 338
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.52 E-value=3.1e+02 Score=33.10 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=14.1
Q ss_pred CChhhhhcChhH-HHHHHHHHHHHHHHHHHHHHHH
Q psy8072 402 LPESVIVETTEY-KCLQSAYSVLYNENQLAKTQAQ 435 (584)
Q Consensus 402 l~ee~I~~S~~Y-k~LqsQ~s~l~~e~~~lk~qL~ 435 (584)
+|.++|.....| .....++..++......+.+++
T Consensus 494 lp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e 528 (771)
T TIGR01069 494 IPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELE 528 (771)
T ss_pred cCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455555444433 2233344444444333333333
No 339
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.50 E-value=2e+02 Score=24.27 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 233 EQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 233 ~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..|..|...=..|+..-..+...+-++++.++++..++.++...++....
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444
No 340
>PRK11020 hypothetical protein; Provisional
Probab=42.67 E-value=2e+02 Score=26.66 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q psy8072 424 YNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGP 503 (584)
Q Consensus 424 ~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~ 503 (584)
-+|+.+|+..||.++..+.+... ..+.....+...++..++..+++++..+..-...-.+.+. .=|
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~----------rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~----~lp 69 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASL----------RGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLM----KLP 69 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC
Confidence 45666678888877777665543 2233334556667778888888887776543333222222 125
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCcccccCCCCCcccccchhhHHhhhhc
Q psy8072 504 INREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYRLHAGGSGFDSRWGRSFSLCLMFGV 580 (584)
Q Consensus 504 i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (584)
..+++- |.-|++..+|++.+.-.-.-|--|- .||...|--|-|+
T Consensus 70 F~R~iT------------------------K~EQADMGkLKKSVrGLVVVHPMTa---------LGrEmgLk~mTGf 113 (118)
T PRK11020 70 FSRAIT------------------------KKEQADMGKLKKSVRGLVVVHPMTA---------LGREMGLKEMTGF 113 (118)
T ss_pred cchhcc------------------------HHHHHhHHHHhhcccceeEecCchH---------HHHHcCcceeccc
Confidence 554432 4557788888888776433332232 3455555555554
No 341
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=42.60 E-value=1.3e+02 Score=28.13 Aligned_cols=83 Identities=23% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 464 KKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 464 ~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
..+.+++.+||.++.++...-+.--.++.+....-++.-.-..+++.=+..+-..+.++ ++++=||..|++-......+
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~-~~~r~yk~eYk~llk~y~~~ 101 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD-SKVRWYKDEYKELLKKYKDL 101 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q psy8072 544 RISE 547 (584)
Q Consensus 544 r~~~ 547 (584)
+...
T Consensus 102 ~~~L 105 (126)
T PF09403_consen 102 LNKL 105 (126)
T ss_dssp HHHH
T ss_pred HHHH
No 342
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=42.40 E-value=5.5e+02 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=25.1
Q ss_pred HhhhhchhhHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 72 EKRQTQDDAVLNVVNRYWNQLNEDIRILLQR 102 (584)
Q Consensus 72 e~rQ~~~D~~L~vVnr~WnQL~ddi~lL~~r 102 (584)
++|+..|+..+.-+...-+++..|++-++..
T Consensus 3 e~rr~rh~~~~~~~~~e~~~i~~e~e~~i~~ 33 (473)
T PF14643_consen 3 ERRRERHEKALESFHEELASISEEVEPLILE 33 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888887753
No 343
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=42.23 E-value=2.1e+02 Score=26.70 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=27.6
Q ss_pred ChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy8072 403 PESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQR 450 (584)
Q Consensus 403 ~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~ 450 (584)
.+.++.+++.|+.++.++.... ....++++..+..++.....+..
T Consensus 24 ~~~v~~~~~~~k~~~~~l~~~~---~~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 24 VDKVFQESPAGKDAQAKLQEKF---KALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888877776663 33455555555555555544433
No 344
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.08 E-value=3.6e+02 Score=26.74 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRK 532 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k 532 (584)
+..++..++.++..+......|..+.+..... ....+.....-.++++..|+-+-..+|..
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~------~~e~~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKR------EEELRQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665555554332 11122222333444555555544444433
No 345
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=41.50 E-value=2.4e+02 Score=24.66 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=23.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEAT 295 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~al 295 (584)
...+.+++.|......+-.+|++++.|..+|+..-.++.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs 73 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVS 73 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666664333333
No 346
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.23 E-value=3.4e+02 Score=26.20 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=57.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
+|+-.|..|...+..=-..+..|..++.....-+..++.++.-...+...++.+|.+....+.+++..+.++.
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666677888888888888899999999999999999999999999888888765554
No 347
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.99 E-value=4.9e+02 Score=28.00 Aligned_cols=71 Identities=20% Similarity=0.327 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
.+.++..++..|+.++.+|+....+....... +..+..-+..-..=+..|.+|-.||.....+....+..|
T Consensus 240 ~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~-------~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 240 KQAELAELEEKLAALQKEYEEAQKEKQELEEE-------IEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhccc
Confidence 45566666666777777766655554433322 233333344555567777888888866666665555555
No 348
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=40.58 E-value=7.5e+02 Score=30.05 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEAT 295 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~al 295 (584)
.|+.+|-.|+...+........|+.|+-+|..-+..+++..-+....+++=..+|-+.....+--.- |+.-.+.+|+
T Consensus 431 sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~---rik~ev~eal 507 (861)
T PF15254_consen 431 SLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETT---RIKIEVEEAL 507 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHH
Q ss_pred HHhhhhhccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 296 EKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKL 367 (584)
Q Consensus 296 e~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~L 367 (584)
-.+++.. -+++..+.+---+..-...|-.|+.+|++=...|+.-..+|
T Consensus 508 ~~~k~~q------------------------~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 508 VNVKSLQ------------------------FKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHh------------------------hhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 349
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=40.37 E-value=36 Score=30.44 Aligned_cols=29 Identities=38% Similarity=0.743 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8072 508 MRHLITSLQNHNKQIKGEVNRYKRKYKET 536 (584)
Q Consensus 508 mr~LisSlq~~i~~LksEv~R~K~k~kea 536 (584)
||-=++-+.++|.+|..|+.|||.++.+.
T Consensus 20 lRRkl~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 20 LRRKLSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45556778899999999999997765543
No 350
>PRK04325 hypothetical protein; Provisional
Probab=40.35 E-value=85 Score=26.56 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=33.4
Q ss_pred HHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy8072 488 RIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETS 537 (584)
Q Consensus 488 ~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~ 537 (584)
..++|.++|- -...+.++-..|...+..|..|+.++..+..++++..
T Consensus 11 i~~LE~klAf---QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAF---QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455553 2245677777888888889999999988888887753
No 351
>PRK10869 recombination and repair protein; Provisional
Probab=40.28 E-value=6.4e+02 Score=29.13 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHH
Q psy8072 230 NLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDL 273 (584)
Q Consensus 230 ~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~ 273 (584)
.+...+..+-.+++.+..++..++........++.-|+-+++++
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555666666666666666666666666666
No 352
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=40.15 E-value=2.3e+02 Score=23.96 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 504 INREMRHLITSLQNHNKQIKGEVNRYKRK 532 (584)
Q Consensus 504 i~~Emr~LisSlq~~i~~LksEv~R~K~k 532 (584)
...+++++.+.-+.++.+|..+|..+-++
T Consensus 29 sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~q 57 (70)
T PF04899_consen 29 SYADLQHMFEQTSQENAALSEQVNNLSQQ 57 (70)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 353
>PRK10722 hypothetical protein; Provisional
Probab=39.99 E-value=1.7e+02 Score=30.53 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=33.0
Q ss_pred HhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 244 SISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 244 ~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
.++.|-..++-.....++++..|..+.-+++++|+...+|++.|..
T Consensus 159 ~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTd 204 (247)
T PRK10722 159 ALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTD 204 (247)
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444445556799999999999999999999995544443
No 354
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.64 E-value=1.8e+02 Score=28.56 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
...|...+..| ..|..+..+|..|+..+..+...++.+-.+|.++..+|..+-
T Consensus 11 d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 11 DDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555533 557777778877777777777777777777777777776664
No 355
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.58 E-value=3.2e+02 Score=25.48 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
....|+..=++.|..|+..|+.+-.+++.++++.+++|.+.
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777888888888888877777777777665
No 356
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.33 E-value=2.7e+02 Score=24.59 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHH----------------------HHHHHHHHHHHHHH
Q psy8072 468 GEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHL----------------------ITSLQNHNKQIKGE 525 (584)
Q Consensus 468 s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~L----------------------isSlq~~i~~LksE 525 (584)
.++.++..++..+-..+..|...+.+...+ ..|+..| +..+.+++..|+.+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v-------~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~ 78 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKA-------LEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELR 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHHHhhhhh
Q psy8072 526 VNRYKRKYKETSAEIQKVRISE 547 (584)
Q Consensus 526 v~R~K~k~kea~~e~~~lr~~~ 547 (584)
+.++..++++...++..++...
T Consensus 79 i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 79 IKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 357
>PRK15396 murein lipoprotein; Provisional
Probab=39.31 E-value=1.1e+02 Score=26.39 Aligned_cols=28 Identities=7% Similarity=0.249 Sum_probs=14.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
+.+.+.+..++..+..+..|-.++..|+
T Consensus 42 dql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 42 DQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555533
No 358
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=39.28 E-value=4e+02 Score=26.55 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 464 KKLRGEMMQLEDALSQIRKEYEMLRIEFET 493 (584)
Q Consensus 464 ~~l~s~v~qlE~~LarvR~ere~L~~E~eq 493 (584)
.++++.|.++|..+-+++.+...+..+.+.
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~ 156 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEA 156 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777777777776666555554443
No 359
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.27 E-value=1.9e+02 Score=28.29 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=16.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 255 AVNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 255 ~~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
.......++++|+.+|++...+++...++.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666555555533
No 360
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=39.12 E-value=2.7e+02 Score=24.48 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 465 KLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYK 530 (584)
Q Consensus 465 ~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K 530 (584)
.+..+.-++-..+..+|++++.+--++.+.+.+ |.-..+++.-+..+.+++..++.++..+.
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~----~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKA----GEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT----TCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777778888999999888887774 45555666666666777777777765553
No 361
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=39.12 E-value=96 Score=27.23 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=18.4
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 251 ELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 251 ~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
.+..+++.+..+++.++...+.+..|-.+++.|+
T Consensus 35 ~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 35 TLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344445555555556666666666666644
No 362
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=38.98 E-value=4.1e+02 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=13.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.....+|.+|+...+.+..++..++.
T Consensus 155 e~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 155 EAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555554
No 363
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=38.80 E-value=1.2e+02 Score=26.56 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHH
Q psy8072 227 ENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQY 275 (584)
Q Consensus 227 E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~ 275 (584)
++..|+..+..|..|.-.++.+.+..+........|-.+...+||...+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~ 73 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDY 73 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3778888899999999999999999999999999999999998887653
No 364
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=38.58 E-value=3e+02 Score=24.90 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC----------chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTG----------PINREMRHLITSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g----------~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ke 535 (584)
....+...+..|..+...++.....+..... .| .++.-+...|...+..+..++.+|...+..|.+
T Consensus 25 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~ 100 (141)
T TIGR02473 25 AQAEFERLETQLQQLIKYREEYEQQALEKVG----AGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLE 100 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777665433 33 233444444555556666666777777777777
Q ss_pred HHHHHHHh
Q psy8072 536 TSAEIQKV 543 (584)
Q Consensus 536 a~~e~~~l 543 (584)
|..+..++
T Consensus 101 a~~~~k~l 108 (141)
T TIGR02473 101 ARRELKAL 108 (141)
T ss_pred HHHHHHHH
Confidence 77665544
No 365
>PRK11546 zraP zinc resistance protein; Provisional
Probab=37.71 E-value=3.6e+02 Score=25.92 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=48.9
Q ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 210 IPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 210 ~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
+|+=...++++.++...+...|+..+- .-..|++.+-..-.-++.+|..|..++.+++..|..-+- ++..
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~-------aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~---~~~~ 114 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLV-------SKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV---KRDI 114 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 444455666666666666666665544 333455566666688888899999999999988887766 5555
Q ss_pred HHH
Q psy8072 290 HLL 292 (584)
Q Consensus 290 ~la 292 (584)
.++
T Consensus 115 ~~~ 117 (143)
T PRK11546 115 AMA 117 (143)
T ss_pred HHH
Confidence 444
No 366
>PRK15396 murein lipoprotein; Provisional
Probab=37.65 E-value=1.1e+02 Score=26.32 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHH
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYEL 277 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL 277 (584)
+..|+.++..|..|.-.+......++..+.....|..+...+||....-|
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66778888888888888888888888888888888888888888765433
No 367
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.59 E-value=3.6e+02 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Q psy8072 518 HNKQIKGEVNRYKRKYKETSAEI 540 (584)
Q Consensus 518 ~i~~LksEv~R~K~k~kea~~e~ 540 (584)
=++.+..-+.+||.++|+...+|
T Consensus 92 ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 92 LLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhHHHHHHHHHHHHHHcCCCc
Confidence 35677888899999999887665
No 368
>PLN02939 transferase, transferring glycosyl groups
Probab=37.44 E-value=9.2e+02 Score=30.15 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=13.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
.+..+++..|++++.-+.-.|.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (977)
T PLN02939 159 EKILTEKEALQGKINILEMRLSETD 183 (977)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhhhh
Confidence 4455555555555555555555543
No 369
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=36.86 E-value=5.2e+02 Score=27.15 Aligned_cols=28 Identities=4% Similarity=0.054 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETN 494 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~ 494 (584)
+.++.+.+.++...+.+++..+..+...
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 171 (331)
T PRK03598 144 ANDLENARSSRDQAQATLKSAQDKLSQY 171 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555666655555443
No 370
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=36.56 E-value=7.9e+02 Score=29.14 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 331 DLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 331 eL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.+..-++|..+-....+.+...++.+.+.+..++..+--.
T Consensus 301 sv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e 340 (632)
T PF14817_consen 301 SVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEE 340 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888889999999999999999999998888766
No 371
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.52 E-value=3.9e+02 Score=28.20 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=38.7
Q ss_pred HHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 238 LHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 238 L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
|......+..+++..+..+....++-+.|...++.-..||+++++|+.-|.+
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555666777777888888889999999999999999995555544
No 372
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=36.28 E-value=3.3e+02 Score=24.72 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 232 TEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 232 q~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
|.....|...-|.-...++.++..++.+.=+.++|.-.++.+|.|++...
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555556666666666667777777777777776443
No 373
>PRK10132 hypothetical protein; Provisional
Probab=36.28 E-value=3.3e+02 Score=24.77 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cccCCchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHhhhhh
Q psy8072 472 QLEDALSQIRKEYEMLRIEFETNLAA-NEQTGPINREMRHLITSLQNHNKQIKGEVN---RYKRKYKETSAEIQKVRISE 547 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~eq~~aa-~Eq~g~i~~Emr~LisSlq~~i~~LksEv~---R~K~k~kea~~e~~~lr~~~ 547 (584)
++|.+..+++.+-..|-..+|+.+.. -+.+|+-..++|.=+. ......+.-+. ....++|++.. ..+.-+
T Consensus 9 ~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~---~~L~~ar~~l~~~~~~~~~~~~a~~---~~~~~V 82 (108)
T PRK10132 9 DVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQ---ALLKETRARMHGRTRVQQAARDAVG---CADTFV 82 (108)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHH
Confidence 45566666666667777777766653 1122233344444433 33333333222 22233344333 445556
Q ss_pred cC-CCC
Q psy8072 548 RS-PWP 552 (584)
Q Consensus 548 ~s-~~~ 552 (584)
+. ||-
T Consensus 83 ~~~Pw~ 88 (108)
T PRK10132 83 RERPWC 88 (108)
T ss_pred HhCcHH
Confidence 65 664
No 374
>KOG4196|consensus
Probab=36.04 E-value=48 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8072 510 HLITSLQNHNKQIKGEVNRYKRKYKETSAEIQ 541 (584)
Q Consensus 510 ~LisSlq~~i~~LksEv~R~K~k~kea~~e~~ 541 (584)
.=|..|..+|..|.-|+.-||-||.-++.-+.
T Consensus 88 qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 88 QQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33555667788888888888888888776655
No 375
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=35.82 E-value=4.2e+02 Score=25.70 Aligned_cols=65 Identities=25% Similarity=0.257 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 424 YNENQLAKTQAQEFQSHLSASKNN--QQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETN 494 (584)
Q Consensus 424 ~~e~~~lk~qL~e~r~~Lq~~R~~--~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~ 494 (584)
-.+...|..++++.+.--++.=.. .++...+||..|+ -.++...-..|+++.+|||+|+-++=+.
T Consensus 84 ~~rV~~Lqd~~~~hksa~~aLas~L~~Lr~q~e~e~kea------a~qL~~~~a~L~~v~~ERD~Lr~kLlqa 150 (152)
T PF15186_consen 84 ARRVQWLQDQAEEHKSAAWALASELKRLREQREMERKEA------AFQLQLTQAALQEVQKERDLLRWKLLQA 150 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555444432221111 1122244555555 4566677788999999999999887553
No 376
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.27 E-value=1.2e+02 Score=24.49 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 505 NREMRHLITSLQNHNKQIKGEVNRYKR 531 (584)
Q Consensus 505 ~~Emr~LisSlq~~i~~LksEv~R~K~ 531 (584)
+.++..-+..|...|..|+.++..|+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 377
>PRK02119 hypothetical protein; Provisional
Probab=35.23 E-value=2.8e+02 Score=23.45 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=26.6
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHh
Q psy8072 251 ELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKV 298 (584)
Q Consensus 251 ~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~ 298 (584)
.+.+.+..++.++.-.+..++++-.-+-+-.+.+++|...+....+++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665555555555555554444433333
No 378
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.23 E-value=1.2e+02 Score=29.57 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=29.0
Q ss_pred HHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q psy8072 239 HAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELS 278 (584)
Q Consensus 239 ~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~ 278 (584)
.++...+..++..+..++...+.++..|+.|.+.++.||+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455566667777777777788888888888888777653
No 379
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.23 E-value=2.4e+02 Score=23.53 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=13.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDK 286 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~K 286 (584)
..+..+...+..+-..+....+.++.|++.
T Consensus 24 ~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 24 RLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555553333
No 380
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=35.17 E-value=1.1e+02 Score=24.03 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=24.1
Q ss_pred HHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHhhh
Q psy8072 41 KVLKFQNKK--LAQRIEQKNQVEHELRSRIEQLEKRQ 75 (584)
Q Consensus 41 ~vLqfQn~k--L~Q~LE~qr~~~~~LE~rieeLe~rQ 75 (584)
.++.||++- +-|.|-.+ .+++-.|++.||.++
T Consensus 13 slv~FQ~~v~~~lq~Lt~k---L~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 13 SLVAFQNKVTSALQSLTQK---LDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcc
Confidence 589999965 55666533 677889999998875
No 381
>KOG4005|consensus
Probab=35.12 E-value=1.7e+02 Score=30.47 Aligned_cols=79 Identities=18% Similarity=0.295 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHH
Q psy8072 264 AELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELA 343 (584)
Q Consensus 264 ~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA 343 (584)
++-+..|+-+.||=..-|| ||.++.|.-. .. ...+.+.++|+.++.++.+--
T Consensus 55 ~rKr~RL~HLS~EEK~~Rr---KLKNRVAAQt---------aR----------------DrKKaRm~eme~~i~dL~een 106 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRR---KLKNRVAAQT---------AR----------------DRKKARMEEMEYEIKDLTEEN 106 (292)
T ss_pred HHHHHhhcccCHHHHHHHH---HHHHHHHHhh---------hh----------------hHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888777777 8887665322 00 112223677777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 344 NNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 344 ~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
..=..|=+.|+..+..|+-++..|-+.
T Consensus 107 ~~L~~en~~Lr~~n~~L~~~n~el~~~ 133 (292)
T KOG4005|consen 107 EILQNENDSLRAINESLLAKNHELDSE 133 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 666677788888888888888888888
No 382
>KOG0239|consensus
Probab=34.79 E-value=8.6e+02 Score=29.03 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=47.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 217 VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
+........+++..|+.++..|..+++.+......+...+......+..+..+|++....|..-.
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666788888888888888888888877777777777777777777777776666444
No 383
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.74 E-value=1.8e+02 Score=27.88 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=29.5
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhchHHHHHHH-------HHHHHHHHHHHHHHh
Q psy8072 236 TKLHAKYHSISLKISELQDAVNGKETEAAELR-------NQIDDLQYELSKVQS 282 (584)
Q Consensus 236 ~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~-------~qLee~~~eL~k~~r 282 (584)
+.++.-|.++..+...+++++-..++|+.-|- ..+..++-|+...+.
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 33444455566666677777777777777764 235666666666666
No 384
>KOG2264|consensus
Probab=34.51 E-value=3.1e+02 Score=32.09 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=23.3
Q ss_pred ccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHH
Q psy8072 385 SVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVL 423 (584)
Q Consensus 385 ~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l 423 (584)
-+-||-|+| +...+.-.|...+.|-.-=+.|+..
T Consensus 45 ~~a~~~lt~-----~qdA~~~~~~~~~p~~~s~~~~s~~ 78 (907)
T KOG2264|consen 45 FSAPSWLTT-----LQDALKQNIENLDPYDASCSGYSIG 78 (907)
T ss_pred cccceeeec-----ccccchhcccccCcccccccchhHH
Confidence 456888888 7766777777777776555555544
No 385
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=34.47 E-value=5.3e+02 Score=26.47 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy8072 173 SKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISEL 252 (584)
Q Consensus 173 tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l 252 (584)
...+...|+.-.+..-...+.++..|.+.. +..|...+..+..--|.+......+
T Consensus 63 ~~~sW~~iL~ete~~A~~~~~~ae~l~~~i-------------------------~~~l~~l~~~~~~~rK~~~~~~~kl 117 (237)
T cd07657 63 ISKSWKEIMDSTDQLSKLIKQHAEALESGT-------------------------LDKLTLLIKDKRKAKKAYQEERQQI 117 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCccccchhhhHH
Q psy8072 253 QDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDL 332 (584)
Q Consensus 253 ~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL 332 (584)
++.+...-.++...+...+.+..+.+.++.+.++... ..+.+
T Consensus 118 ~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~----------------------------~~~~~---------- 159 (237)
T cd07657 118 DEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV----------------------------KGGRG---------- 159 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------hcccc----------
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChh
Q psy8072 333 QKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTE 412 (584)
Q Consensus 333 ~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~ 412 (584)
..+++.++.=...+..++...+.+-...+......+.+ |....=|..|+. |..+.|+.|.....
T Consensus 160 ~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~-----------yY~~~lP~ll~~-----lQ~l~E~ri~~~k~ 223 (237)
T cd07657 160 GRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEED-----------YRTLLLPGLLNS-----LQSLQEEFITQWKK 223 (237)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHH-----HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q psy8072 413 YKCLQSAYSVLYNE 426 (584)
Q Consensus 413 Yk~LqsQ~s~l~~e 426 (584)
+-.-=..++.+..+
T Consensus 224 ~l~~~~~~~~~~~~ 237 (237)
T cd07657 224 ILQEYLRYSDLTTD 237 (237)
T ss_pred HHHHHHHhhhhccC
No 386
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=34.42 E-value=5.2e+02 Score=26.37 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=50.8
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHH--------H----------HHHHHHHHH
Q psy8072 212 SLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEA--------A----------ELRNQIDDL 273 (584)
Q Consensus 212 d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~--------~----------eL~~qLee~ 273 (584)
...+.|++....+.......+..+......|.....+.+..|-.++.+-++. . .++....++
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~a 111 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEA 111 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4456677777777777777777777777777766666665555555444331 1 134455566
Q ss_pred HHHHHHHHhHHHhhHHHHHHHH
Q psy8072 274 QYELSKVQSRNDKLENHLLEAT 295 (584)
Q Consensus 274 ~~eL~k~~rr~~KL~~~la~al 295 (584)
..+|..++..++++...|..++
T Consensus 112 k~~l~~aE~~~e~~~~~L~~~I 133 (207)
T PF05546_consen 112 KEALEEAEEKVEEAFDDLMRAI 133 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667766666555554444
No 387
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=34.41 E-value=2.6e+02 Score=27.14 Aligned_cols=84 Identities=11% Similarity=0.247 Sum_probs=43.9
Q ss_pred HHHHHhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHH
Q psy8072 148 TSFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTE 227 (584)
Q Consensus 148 ~~FL~~Lss~d~~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E 227 (584)
..|...+.+-+.++|-..+..-...--.-+..++.. |...|.. .+|.+.+.+..++..|.+-
T Consensus 14 ~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~----------l~eeik~--------~n~~~~e~l~~~~~kl~et 75 (155)
T PF07464_consen 14 EQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSS----------LQEEIKD--------ANPEAEEALKQLKTKLEET 75 (155)
T ss_dssp HHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHH----------HHHHHTT---------SSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHh--------cChhHHHHHHHHHHHHHHH
Confidence 355555555555666665555444433333333333 3333444 3678888888887776666
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKI 249 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~ 249 (584)
...|+...-.+..+-..|..++
T Consensus 76 ~~~L~k~~Pev~~qa~~l~e~l 97 (155)
T PF07464_consen 76 AEKLRKANPEVEKQANELQEKL 97 (155)
T ss_dssp HHGGGG-SHHHHHT-SSSHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHH
Confidence 6666665555555555555554
No 388
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=34.28 E-value=3.8e+02 Score=26.26 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhch
Q psy8072 227 ENRNLTEQNTKLHAKYHSISLKISELQDAVNGKE 260 (584)
Q Consensus 227 E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~e 260 (584)
.+..|+..+..-+.+-..+..++..+++.+..+.
T Consensus 111 ~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~ 144 (184)
T PF05791_consen 111 IIEDLQDQIQKNQDKVQALINELNDFKDKLQKDS 144 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
No 389
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=34.08 E-value=6.7e+02 Score=27.57 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhc
Q psy8072 180 IIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGK 259 (584)
Q Consensus 180 lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ 259 (584)
++..++....+.+.|...|.++. ...+.. .+ ..+..|-..|+. +..++++|..-...+.+.-..+
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~------v~~d~~-~~----~~lske~a~l~~----iv~~~~~~~~~~~~l~~a~~~l 69 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPE------VISDPD-EY----RKLSKEYAELEP----IVEKYREYKKAQEDLEDAKEML 69 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc------cccCHH-HH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777777777753 233321 12 233334444444 3344444443333333333322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q psy8072 260 ETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEAT 295 (584)
Q Consensus 260 ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~al 295 (584)
..+ .-.+..+-++.|+..++.++.+|+..|.-.|
T Consensus 70 ~~~--~D~em~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 70 AEE--KDPEMREMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred hcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 221 0111122355566666666666665554444
No 390
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.06 E-value=1.3e+02 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q psy8072 511 LITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISE 547 (584)
Q Consensus 511 LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~ 547 (584)
-+..+.+++..+..+..+++.++++...++..|+.+.
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3777888899999999999999999999999998764
No 391
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=34.06 E-value=4e+02 Score=24.97 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHH
Q psy8072 344 NNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVL 423 (584)
Q Consensus 344 ~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l 423 (584)
+.|+.++++++......++++ ++.+...++..+ .-|..+.+.+...
T Consensus 39 ~~~~~~f~~~~~~~~~~L~~v------------------------------V~eh~q~Fn~sI----~sy~~i~~~i~~s 84 (142)
T PF04048_consen 39 AHRYQEFEELKKRIEKALQEV------------------------------VNEHYQGFNSSI----GSYSQILSSISES 84 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8072 424 YNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLED 475 (584)
Q Consensus 424 ~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~ 475 (584)
..++..+|..|..++..|..-|...... ..+....+++-.-+.++|.
T Consensus 85 q~~i~~lK~~L~~ak~~L~~~~~eL~~L-----~~~s~~~~~mi~iL~~Ie~ 131 (142)
T PF04048_consen 85 QERIRELKESLQEAKSLLGCRREELKEL-----WQRSQEYKEMIEILDQIEE 131 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHHHHHHHHHHHHHH
No 392
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=34.01 E-value=6e+02 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=18.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 258 GKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 258 ~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
..+..+..++.+++.++..+..+++..++..
T Consensus 111 ~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~ 141 (346)
T PRK10476 111 AERSNAASANEQVERARANAKLATRTLERLE 141 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677777777777776444433
No 393
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=33.83 E-value=5.8e+02 Score=26.76 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=20.3
Q ss_pred hHHHHHhhccCChHHHHHHHHhHH-HHHHHHHHHHHHHHHH
Q psy8072 147 TTSFLMQLSTWDKEELDEKLANRV-QVSKRAVAKIIQAFDR 186 (584)
Q Consensus 147 ~~~FL~~Lss~d~~e~e~~L~~R~-~~tk~~v~~lv~~~d~ 186 (584)
..+|+..+.+.+.+.++.++..=. .....++..-+..+..
T Consensus 14 ~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~ 54 (297)
T PF02841_consen 14 VKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEE 54 (297)
T ss_dssp HHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666777777665443 2334444444444443
No 394
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=33.72 E-value=3.5e+02 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCC
Q psy8072 515 LQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSP 550 (584)
Q Consensus 515 lq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~ 550 (584)
.+.+...|-.==.+|-..+.+|.+++..||.++.++
T Consensus 26 ~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG 61 (125)
T PF03245_consen 26 MQQRQQALAALDAKYTKELADAKAEIDRLRADLAAG 61 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence 334444444444577777888888888888887663
No 395
>KOG4572|consensus
Probab=33.41 E-value=1e+03 Score=29.38 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-chHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTG-PINREMRHLITS-----LQNHNKQIKGEVNRYK 530 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g-~i~~Emr~LisS-----lq~~i~~LksEv~R~K 530 (584)
.++++..+-..+.++..+.++|.+++-|-+. | -|..||+++=.| +..+....+++..+.|
T Consensus 1007 hrselEe~kKe~eaiineiee~eaeIiQekE-----~el~e~efka~d~Sd~r~kie~efAa~eaemdeik 1072 (1424)
T KOG4572|consen 1007 HRSELEEKKKELEAIINEIEELEAEIIQEKE-----GELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIK 1072 (1424)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHhccc-----chHHHHHhhhccccCcchhHHHHHHHHHhhhhhhh
Confidence 4556666667777777777777777665333 3 445555555322 3444444444444443
No 396
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=33.18 E-value=1.8e+02 Score=24.91 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-----chHHHHHHHHHHHHHHHHHH
Q psy8072 470 MMQLEDALSQIRKEYEMLRIEFETNLAANEQTG-----PINREMRHLITSLQNHNKQI 522 (584)
Q Consensus 470 v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g-----~i~~Emr~LisSlq~~i~~L 522 (584)
|..|+|++.++.-++..|..++.+--.+ .| ....+++.|+..+...-.|+
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d~s---~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMDPS---LGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc---cChHHHHHHHHHHHHHHHHHHHHHHHH
No 397
>KOG4403|consensus
Probab=32.33 E-value=7.9e+02 Score=27.90 Aligned_cols=60 Identities=13% Similarity=0.273 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh--------chHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNG--------KETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~--------~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
......||..+.+-+.+|+....+-..|+.+... --.+......+||-++..|.++++++
T Consensus 258 Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888877777777666651 12233344457777888888888755
No 398
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.13 E-value=2.2e+02 Score=29.15 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8072 469 EMMQLEDALSQIRKEYEMLRI 489 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~ 489 (584)
.+..+|.+|.++|.+-|.++.
T Consensus 163 d~l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 163 DLLEIERELSRVRSEIEQLEG 183 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444433
No 399
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=32.11 E-value=5.6e+02 Score=26.03 Aligned_cols=109 Identities=17% Similarity=0.286 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIE 490 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E 490 (584)
..|..|+++|+...+....+...++....--.+.-+.+...++...+.. ||. .-+..|++.|..|..|..-
T Consensus 64 ~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~s------LR~---~S~~kL~~tr~~Y~~L~~a 134 (201)
T PF11172_consen 64 DKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNAS------LRR---ASEQKLAETRRRYAQLIKA 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHH---HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999777777777766665555555443333333333322 332 3345677888888888887
Q ss_pred HHHHhhhcccCCchHHHHHHH------------HHHHHHHHHHHHHHHHHHHh
Q psy8072 491 FETNLAANEQTGPINREMRHL------------ITSLQNHNKQIKGEVNRYKR 531 (584)
Q Consensus 491 ~eq~~aa~Eq~g~i~~Emr~L------------isSlq~~i~~LksEv~R~K~ 531 (584)
+..+-.+ =.|...-||-- |.||+.+...++++|.++=.
T Consensus 135 M~~Ae~k---m~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~ 184 (201)
T PF11172_consen 135 MRRAESK---MQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIK 184 (201)
T ss_pred HHHHHHh---cChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665554 33666666543 66777777778877777733
No 400
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.04 E-value=3.3e+02 Score=23.38 Aligned_cols=40 Identities=10% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q psy8072 508 MRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISE 547 (584)
Q Consensus 508 mr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~ 547 (584)
...++..+.+++..++.++..++.+.+.....+..+++..
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666777777666666666666665543
No 401
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=31.97 E-value=5e+02 Score=25.46 Aligned_cols=66 Identities=9% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
|..++....+....+..+-..++..+..-... =+....++...+.+-...|..|+.++.+++...+
T Consensus 115 L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~---l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 115 LQDQIQKNQDKVQALINELNDFKDKLQKDSRN---LKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666655554443 2355667777777777888888888888865544
No 402
>PRK04325 hypothetical protein; Provisional
Probab=31.81 E-value=3.2e+02 Score=23.12 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=23.5
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhh
Q psy8072 254 DAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKL 300 (584)
Q Consensus 254 d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s 300 (584)
+.+..++.++.-.+..++++-.-+-+-.+.+++|...+....+++++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555444443444333
No 403
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.46 E-value=3.2e+02 Score=24.56 Aligned_cols=52 Identities=27% Similarity=0.420 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHh--hhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 231 LTEQNTKLHAKYHSISLKISEL--QDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 231 Lq~~~~~L~~khk~ls~e~~~l--~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
+...++.....--.+..++.++ ++.+..++-++.+++|++..+...+.-..+
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333444455555 555677777777777777777777766665
No 404
>KOG3647|consensus
Probab=31.43 E-value=1.4e+02 Score=31.48 Aligned_cols=53 Identities=19% Similarity=0.369 Sum_probs=45.4
Q ss_pred HHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 237 KLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 237 ~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
.|++..+.+..+++..+++++-.-++...|...|+.-..+|+..++|+.+|.+
T Consensus 109 vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 109 VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666777888888889999999999999999999999999999997666665
No 405
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.29 E-value=1.8e+02 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRI 489 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~ 489 (584)
...+.+|+..+..+-.+.+.|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444444443
No 406
>KOG1899|consensus
Probab=31.22 E-value=9.7e+02 Score=28.56 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 232 TEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 232 q~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
|+.+..|.-.-..+.++++-|-|.+.---.+|.+|+.=|++-+..|-..+.
T Consensus 110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEE 160 (861)
T KOG1899|consen 110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEE 160 (861)
T ss_pred HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHH
Confidence 333333333334444555555555566666677777766665555544444
No 407
>PRK00736 hypothetical protein; Provisional
Probab=31.11 E-value=3.1e+02 Score=22.79 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=23.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhh
Q psy8072 255 AVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKL 300 (584)
Q Consensus 255 ~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s 300 (584)
.+..++.++.-.+..+|++-.-+-+-.+.+++|...+....+++..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555444444444433
No 408
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=31.09 E-value=3.4e+02 Score=23.30 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhc---hHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHH
Q psy8072 231 LTEQNTKLHAKYHSISLKISELQDAVNGK---ETEAAELRNQIDDLQYELSKVQSRNDKLENHL 291 (584)
Q Consensus 231 Lq~~~~~L~~khk~ls~e~~~l~d~~~~~---ese~~eL~~qLee~~~eL~k~~rr~~KL~~~l 291 (584)
|+..+..+..+...+...++..-..+... ...-...+.+.+.+.-++..+-...+++.+..
T Consensus 31 lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~ 94 (102)
T PF14523_consen 31 LREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRY 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433333333332 33444445555555555555555554444433
No 409
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=31.08 E-value=2.1e+02 Score=23.72 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIE 490 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E 490 (584)
.|...+..|..+..-.+.+.+|
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E 47 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 410
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=30.90 E-value=5.7e+02 Score=27.90 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
....-|..|+++....|..|+..|...+..-+
T Consensus 180 ~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 180 DLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Confidence 34556778888888888888888877754333
No 411
>KOG4196|consensus
Probab=30.53 E-value=4.8e+02 Score=24.80 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 441 LSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 441 Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~a 496 (584)
-+.=|.....|-.++|.+-. .+..+|.+|..++++++-|+|-++..++....
T Consensus 65 A~sCR~KRv~Qk~eLE~~k~----~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 65 AQSCRVKRVQQKHELEKEKA----ELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455333333222 27778999999999999999999999987654
No 412
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.52 E-value=1.1e+03 Score=28.89 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=25.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhh-chhhHHHHHHHHHHHHHHH
Q psy8072 50 LAQRIEQKNQVEHELRSRIEQLEKRQT-QDDAVLNVVNRYWNQLNED 95 (584)
Q Consensus 50 L~Q~LE~qr~~~~~LE~rieeLe~rQ~-~~D~~L~vVnr~WnQL~dd 95 (584)
|-+...+-......++.+++.|+.+.. ..+..-..+.+.|..+...
T Consensus 169 ~e~~~~~l~e~~~~~~~~~e~l~~~~~~~~e~~~~~~~~~~~e~~~~ 215 (908)
T COG0419 169 YEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKEL 215 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 444444444455566667777776666 3333333466666666555
No 413
>KOG4603|consensus
Probab=30.24 E-value=2.4e+02 Score=28.07 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=25.1
Q ss_pred HHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHH--HHHHHHHHHHHh
Q psy8072 238 LHAKYHSISLKISELQDAVNGKETEAAELRNQI--DDLQYELSKVQS 282 (584)
Q Consensus 238 L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qL--ee~~~eL~k~~r 282 (584)
|-.+.-.|..+.+++++.+.-.+++|++|..-| +++|.++.+..+
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~k 130 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKK 130 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 444444555555666666666666666666543 445555544443
No 414
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=30.17 E-value=3.1e+02 Score=29.37 Aligned_cols=69 Identities=13% Similarity=0.288 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETS 537 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~ 537 (584)
.+.++..++..++.....++.+++......+..++....|...+.....++..|+....+.+..++++.
T Consensus 275 ~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~ 343 (370)
T PF02181_consen 275 SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLL 343 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666665554433445599999999999999999999988888865555543
No 415
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.11 E-value=2.6e+02 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=8.8
Q ss_pred HhHHHHHHhhhhhhhchHHHHHH
Q psy8072 244 SISLKISELQDAVNGKETEAAEL 266 (584)
Q Consensus 244 ~ls~e~~~l~d~~~~~ese~~eL 266 (584)
.+..++..+++.+..+-.|..+|
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333333333333333
No 416
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.98 E-value=5.7e+02 Score=28.99 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=17.1
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVLYNENQLAKTQAQEF 437 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~ 437 (584)
.++..+.|+.++..+..+...+..+++..
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 97 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDAL 97 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777755554444444333
No 417
>KOG0249|consensus
Probab=29.79 E-value=1.1e+03 Score=28.64 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.2
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
.-.+..+..|..++++.-.+|..++. |++.
T Consensus 159 ~~~eer~~kl~~~~qe~naeL~rarq---reem 188 (916)
T KOG0249|consen 159 GNIEERTRKLEEQLEELNAELQRARQ---REKM 188 (916)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 44567888899999999999999998 5554
No 418
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=29.65 E-value=7e+02 Score=26.42 Aligned_cols=54 Identities=26% Similarity=0.400 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv 526 (584)
+..-+.+||..|.-+....+.|+..++.- .....|=..|..|+..+-..|+.++
T Consensus 94 lqkl~~eLe~vLs~~q~KnekLke~LerE-------q~wL~Eqqql~~sL~~r~~elk~~~ 147 (268)
T PF11802_consen 94 LQKLISELEMVLSTVQSKNEKLKEDLERE-------QQWLDEQQQLLESLNKRHEELKNQV 147 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555555444432 2467777778888888877777776
No 419
>KOG0240|consensus
Probab=29.61 E-value=9.8e+02 Score=28.09 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQI 452 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qi 452 (584)
..|-.+|.+......+....+.++.+.-..|...+.++-+..
T Consensus 463 ~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~ 504 (607)
T KOG0240|consen 463 RLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKS 504 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 567777777776655444445555455455555555555554
No 420
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=29.52 E-value=4e+02 Score=25.57 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=48.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKV 280 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~ 280 (584)
..+.+..++......+..|..++...+.+-..+.+.++.+-.+-.+|..-.+++...|.-=
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 75 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYF 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455667788888889999999999999999999999998888888887777766655433
No 421
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=29.49 E-value=3.4e+02 Score=22.78 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDK 286 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~K 286 (584)
.+|..++++|....+..--.-|.++.++ -..=.+|-++....=++..++..+++++..
T Consensus 5 ~eLk~evkKL~~~A~~~kmdLHDLaEdL-------P~~w~~i~~vA~~ty~a~~~l~~ak~~L~~ 62 (66)
T PF05082_consen 5 EELKKEVKKLNRKATQAKMDLHDLAEDL-------PTNWEEIPEVAQKTYDAYAELDEAKAELKA 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCT-------TTTGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888887776 777778888888888888888888884433
No 422
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=29.46 E-value=77 Score=36.29 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC--CCCCCcccccCC
Q psy8072 515 LQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS--PWPSGYRLHAGG 561 (584)
Q Consensus 515 lq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s--~~~~~~~~~~~~ 561 (584)
++.++.+|.....|+-..+++|..+|.+|++++.. .||++|-|-++-
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 54 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQT 54 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEe
Confidence 34555555666666666668888888888888877 689998876654
No 423
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=29.13 E-value=6.7e+02 Score=26.07 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=17.1
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDK 286 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~K 286 (584)
...+.++..++.+++.++.++..++..+++
T Consensus 104 ~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r 133 (334)
T TIGR00998 104 QQLQAKVESLKIKLEQAREKLLQAELDLRR 133 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455556666666666666666663333
No 424
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.10 E-value=2.6e+02 Score=31.20 Aligned_cols=60 Identities=25% Similarity=0.416 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh---hhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDA---VNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~---~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.|..+-..++.+++.|+.+...++.++...... ...+..+.++|+.++..+..++..++.
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888888888888888663222 234555666666666666666666665
No 425
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.03 E-value=2.5e+02 Score=25.44 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 334 KDLEEAKELANNRLQELDKLHLQH 357 (584)
Q Consensus 334 ~eleE~k~LA~~Rl~ELe~L~~e~ 357 (584)
..++++.....+|+..|++..+++
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l 106 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKL 106 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888887775554443
No 426
>KOG4603|consensus
Probab=28.98 E-value=3e+02 Score=27.35 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
-|-.++..|+..+..|+.-+..+..++..|.+.++. .+|+.++.++.-+.-.-+.
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~-----eemQe~i~~L~kev~~~~e 137 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT-----EEMQEEIQELKKEVAGYRE 137 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHH
Confidence 355667788888888888888888888888887764 3445555555555555555
No 427
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=28.80 E-value=5.1e+02 Score=24.52 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=31.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAKYH-------SISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~khk-------~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.++..+.-+-.|.++|-..-.....+.. .+..++++++..+...+.-+++|+.++..-..++...+.
T Consensus 42 ~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~ 115 (131)
T PF04859_consen 42 KIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLRE 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443332222221 223444455555555555555555555555555555555
No 428
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=28.66 E-value=7e+02 Score=26.13 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8072 511 LITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 511 LisSlq~~i~~LksEv~R~ 529 (584)
|...++.+...|+.|+..+
T Consensus 278 l~e~~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 278 LKEGFQEEAEKLQKEIQDL 296 (297)
T ss_dssp HHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3334555555555555544
No 429
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=28.60 E-value=2.8e+02 Score=24.35 Aligned_cols=30 Identities=37% Similarity=0.485 Sum_probs=26.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHRE 359 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~ 359 (584)
.+++.++.+.+..+.+=-.+|..|+.||..
T Consensus 39 ~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 39 RSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 677889999999999999999999998864
No 430
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.34 E-value=3.8e+02 Score=29.93 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 413 YKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFE 492 (584)
Q Consensus 413 Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~e 492 (584)
+..|+.++..+..+...++.++.+....+...+.... ...+...-....+.+.....++...+.++..+...|..+++
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK--QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777766666667777666666544443111 00011122222344566666777777777777777777666
Q ss_pred HH
Q psy8072 493 TN 494 (584)
Q Consensus 493 q~ 494 (584)
..
T Consensus 407 ~~ 408 (451)
T PF03961_consen 407 RS 408 (451)
T ss_pred hh
Confidence 65
No 431
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.33 E-value=4.8e+02 Score=25.08 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=27.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKN 446 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~ 446 (584)
...|...+++|..+..+...+++||..+...|...+.
T Consensus 12 gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 12 GKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455567888888888888888888887777777666
No 432
>PLN02678 seryl-tRNA synthetase
Probab=28.08 E-value=4.2e+02 Score=29.94 Aligned_cols=92 Identities=18% Similarity=0.148 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
++.+.-++-.++..+|++++.+-.++...+.. +.-..++..-+..+.++|..|+.++..+ ..++..+-.
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~----~~~~~~l~~~~~~Lk~ei~~le~~~~~~-------~~~l~~~~~ 106 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIA----KEDATELIAETKELKKEITEKEAEVQEA-------KAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 33344444555566777777777777654332 2223344444445555666666655444 444443322
Q ss_pred hhcCCCCCCcccccCCCCCc----ccccc
Q psy8072 546 SERSPWPSGYRLHAGGSGFD----SRWGR 570 (584)
Q Consensus 546 ~~~s~~~~~~~~~~~~~~~~----~~~~~ 570 (584)
.. |-..+-++-.||...+ ..||.
T Consensus 107 ~i--PNi~~~~VP~G~de~~n~~vr~~g~ 133 (448)
T PLN02678 107 TI--GNLVHDSVPVSNDEANNAVVRTWGE 133 (448)
T ss_pred hC--CCCCCccCCCCCCcCCCEEEEEEcC
Confidence 22 3333444556665544 34663
No 433
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=27.90 E-value=4.1e+02 Score=23.84 Aligned_cols=61 Identities=26% Similarity=0.343 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 472 QLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ke 535 (584)
.|...+..-|+-...|..|+++-..| +...-.|-=.||.-||++-..++-|..-|||=..|
T Consensus 3 ~Lr~~v~~er~~~~~L~~ELEeER~A---aAsAA~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EE 63 (94)
T PF04576_consen 3 RLRRAVEAERKALAALYAELEEERSA---AASAASEAMAMILRLQEEKAAVEMEARQYQRMAEE 63 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445555666777788888877776 66667777788888888888888888888865544
No 434
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.89 E-value=5.9e+02 Score=27.24 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8072 415 CLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQI-EMMETEELMV-QKKLRGEMMQLEDALSQIRK 482 (584)
Q Consensus 415 ~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qi-e~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ 482 (584)
-|+..+....++...=-+++++.+.+|--.|. .|| |+.-..|++. -|+.|.+|.||.+.+--+|.
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMrE---DWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMRE---DWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555556666666666666665 333 3344456665 55577777766655544443
No 435
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.76 E-value=3.8e+02 Score=22.77 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-hhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 227 ENRNLTEQNTKLHAKYHSISLKISE-LQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 227 E~~~Lq~~~~~L~~khk~ls~e~~~-l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
.+.+|+.++=.|..+.+-+...+.. .-+....+-.++-+|+.+++.++-++....+.+.+++.
T Consensus 8 ~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543 23334455666667777777777777777765555444
No 436
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.75 E-value=3.5e+02 Score=28.25 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHS 244 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ 244 (584)
.|..++..+|.....|+.+-+.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~ 75 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVED 75 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333
No 437
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=27.60 E-value=6.8e+02 Score=25.64 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 474 EDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 474 E~~LarvR~ere~L~~E~eq~~a 496 (584)
+..+.++....+.++-.-..++.
T Consensus 58 e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 58 ERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334333333333
No 438
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=27.57 E-value=5.2e+02 Score=24.30 Aligned_cols=72 Identities=22% Similarity=0.389 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHH-HHHHHHHHHHHHHHHHHHhHHHhhHHHH
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEA-AELRNQIDDLQYELSKVQSRNDKLENHL 291 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~-~eL~~qLee~~~eL~k~~rr~~KL~~~l 291 (584)
.+..+..++..|+..........-.....+..++.....+..+. +.++.+++++-.=+.-...++.|+-.+|
T Consensus 35 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rL 107 (136)
T PF04871_consen 35 ENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERL 107 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444333333333333333333433334444334 5666677776555555555444555444
No 439
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.51 E-value=6.1e+02 Score=25.08 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 337 EEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 337 eE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+++..+-+.=-.+|+.++..|..|..++.+|..+
T Consensus 77 ~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 77 EELAQVNALLREQLEQARKANEALQEDLQKLTQD 110 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333445777777777777777777777
No 440
>KOG0982|consensus
Probab=27.48 E-value=9.5e+02 Score=27.26 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=31.0
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 328 KLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 328 k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+.+-|..+..+++.+++.=..-.++|-.+.+....+++.+...
T Consensus 305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlq 347 (502)
T KOG0982|consen 305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQ 347 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3456666777777777777777777777777777777777665
No 441
>KOG1962|consensus
Probab=27.38 E-value=6.9e+02 Score=25.63 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 515 LQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 515 lq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
.+++...|+.+.....+.|--...|.++|+.+..+
T Consensus 177 ~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 177 AQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 34555555556655555555566677777776655
No 442
>KOG2751|consensus
Probab=27.35 E-value=9.5e+02 Score=27.20 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=17.9
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLK 368 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk 368 (584)
+++..++++.+.--.+-+++|+++..+...+-.++..++
T Consensus 179 ~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~ 217 (447)
T KOG2751|consen 179 EDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELE 217 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444444444444444455555444444444444443
No 443
>KOG3564|consensus
Probab=27.32 E-value=2.1e+02 Score=32.72 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELS 278 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~ 278 (584)
..|.-+|.....+.++|.+.+..++..++|.+.+.+++...|...|-.++.-+.
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vd 80 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVD 80 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Confidence 346888999999999999999999999999999999999999888888765443
No 444
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=27.31 E-value=5.1e+02 Score=24.08 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=59.8
Q ss_pred hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 405 SVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEY 484 (584)
Q Consensus 405 e~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~er 484 (584)
..|...+.++.++.....+.+....+-...-..+..|.. +++++..+=..+..+..+|
T Consensus 21 ~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~----------------------~r~~l~~~~~~~~~L~~~~ 78 (150)
T PF07200_consen 21 AFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEE----------------------LRSQLQELYEELKELESEY 78 (150)
T ss_dssp HHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHH----------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 356666778888888888866655443322222222222 3444444444555555555
Q ss_pred HHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 485 EMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQI-------KGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 485 e~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~L-------ksEv~R~K~k~kea~~e~~~lr~ 545 (584)
+.+..++...... =.+..+..-+++.+......=..| +.+|.-+-.+|++.....|.-|+
T Consensus 79 ~~k~~~~~~l~~~-~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~ 145 (150)
T PF07200_consen 79 QEKEQQQDELSSN-YSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRRA 145 (150)
T ss_dssp HHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5555554444221 112244444555544444444344 55666777777888887777664
No 445
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=27.21 E-value=3.3e+02 Score=24.13 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=28.4
Q ss_pred cCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 401 QLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSA 443 (584)
Q Consensus 401 ~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~ 443 (584)
.++.+.+..+..|-.++.+.+.|-.+++.++.+-......++.
T Consensus 63 ~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 63 SLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred CCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888888888866666665555444444443
No 446
>PRK10698 phage shock protein PspA; Provisional
Probab=27.21 E-value=6.7e+02 Score=25.43 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=29.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+.+++.++.+.+...+.-+..-..+..+...+...+.++..+
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888887777776666666666666666666666554
No 447
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=27.20 E-value=3.3e+02 Score=22.17 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
++..|..+|+..+.+++.....+..+++.-.=--.-=..=+..-+..++++..++.+....+..|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 448
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=27.18 E-value=5.1e+02 Score=28.28 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=9.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q psy8072 259 KETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 259 ~ese~~eL~~qLee~~~eL~k~~ 281 (584)
++.++.++..+||++...-+..+
T Consensus 156 L~~e~~~~~~qlE~~v~~K~~~E 178 (342)
T PF06632_consen 156 LESEANKLLKQLEKFVNAKEEHE 178 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 449
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=26.99 E-value=5.1e+02 Score=24.01 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=41.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAK----TQAQEFQSHLSASKNNQQRQIEMM-ETEELMVQKKLRGEMMQLEDALSQIRKEY 484 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk----~qL~e~r~~Lq~~R~~~~~qie~m-E~~E~~~q~~l~s~v~qlE~~LarvR~er 484 (584)
|..|-.=-..|..+++.+..+- ..++..+-.-=+.|| +++.+ +..+.. +..+...|......|-|++.+|
T Consensus 29 c~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN----~l~s~~k~R~~~-~q~lq~~I~Ek~~eLERl~~E~ 103 (120)
T PF14931_consen 29 CKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARN----LLKSEAKQREAQ-QQQLQALIAEKKMELERLRSEY 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544442 222322223335555 22222 112222 3348889999999999999999
Q ss_pred HHHHH
Q psy8072 485 EMLRI 489 (584)
Q Consensus 485 e~L~~ 489 (584)
+-|..
T Consensus 104 ~sL~k 108 (120)
T PF14931_consen 104 ESLQK 108 (120)
T ss_pred HHHHH
Confidence 98863
No 450
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.96 E-value=5.9e+02 Score=24.69 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~~a 496 (584)
+++++.+..+..+++.+.+.|+.++.+-..
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666665555443
No 451
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=26.93 E-value=6.9e+02 Score=25.45 Aligned_cols=31 Identities=10% Similarity=0.367 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 504 INREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 504 i~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
....++.++.-..++|-.|++++-+|-.||=
T Consensus 58 ~~~~L~~~LrEkEErILaLEad~~kWEqkYL 88 (205)
T PF12240_consen 58 NASNLKELLREKEERILALEADMTKWEQKYL 88 (205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999988873
No 452
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=26.88 E-value=6.8e+02 Score=25.35 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHhhh
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKY-KETSAEIQKVRI 545 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~-kea~~e~~~lr~ 545 (584)
.++...+...++-+..+-+||+.++.-+-.-.+=..--.+....=+.-++.++..|+..+.+.|+.. ..+..+...+..
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~~a~~~~~ 228 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAVEEAEQLQE 228 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666655433222111123344555557778889999999998887654 445555666655
Q ss_pred h
Q psy8072 546 S 546 (584)
Q Consensus 546 ~ 546 (584)
.
T Consensus 229 ~ 229 (240)
T PF12795_consen 229 E 229 (240)
T ss_pred H
Confidence 4
No 453
>PRK14127 cell division protein GpsB; Provisional
Probab=26.63 E-value=2.1e+02 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 512 ITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 512 isSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
...+..+|..|+.++.+++.++.+.+..+...+..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34667788888888888888888888777755444
No 454
>KOG2629|consensus
Probab=26.56 E-value=5.2e+02 Score=27.72 Aligned_cols=43 Identities=7% Similarity=0.149 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQI 452 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qi 452 (584)
...=+.|.+||..+-+..+.|.+++.+.+.++-...+-+-+.+
T Consensus 121 e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L 163 (300)
T KOG2629|consen 121 EADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRAL 163 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999999988888777666555444443
No 455
>KOG0288|consensus
Probab=26.43 E-value=3.1e+02 Score=30.72 Aligned_cols=77 Identities=22% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 458 EELMVQKK-LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 458 ~E~~~q~~-l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
..+..++. .+.++++++..|+++-+.+..+.++.--..|+.+-...+..+....+.-||+++.+|--+.-+..-.++
T Consensus 2 ~~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~ 79 (459)
T KOG0288|consen 2 APLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEK 79 (459)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=26.37 E-value=4.5e+02 Score=29.26 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPI-NREMRHLITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i-~~Emr~LisSlq~~i~~LksEv~R~ 529 (584)
++.+..++..++..+|++++.+-.++.+.+.+ +.- ..+++.-+..+.++|..|+.++..+
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 95 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQIGKAKGQ----KKDKIEEIKKELKELKEELTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556667777777777777664432 211 3344444444444454444444333
No 457
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.23 E-value=3.2e+02 Score=25.07 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy8072 225 QTENRNLTEQNT 236 (584)
Q Consensus 225 ~~E~~~Lq~~~~ 236 (584)
+..+..|...+.
T Consensus 7 fd~l~~le~~l~ 18 (110)
T PRK13169 7 FDALDDLEQNLG 18 (110)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 458
>smart00340 HALZ homeobox associated leucin zipper.
Probab=26.15 E-value=1.5e+02 Score=22.90 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=18.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8072 214 DEAVREANIEIQTENRNLTEQNTKLHA 240 (584)
Q Consensus 214 ~~~l~~~n~~L~~E~~~Lq~~~~~L~~ 240 (584)
++-|+.-.+.|..||.+||.++..|.+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666667777777777777765543
No 459
>PRK00295 hypothetical protein; Provisional
Probab=26.14 E-value=3.8e+02 Score=22.24 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=20.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHh
Q psy8072 256 VNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKV 298 (584)
Q Consensus 256 ~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~ 298 (584)
+..++.++.-.+..++++-.-+-+-.+.+++|...+.....++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444444444445544444333333
No 460
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=26.08 E-value=1.5e+02 Score=28.29 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=21.8
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHh
Q psy8072 73 KRQTQDDAVLNVVNRYWNQLNEDIRILLQ 101 (584)
Q Consensus 73 ~rQ~~~D~~L~vVnr~WnQL~ddi~lL~~ 101 (584)
.+..+.+....+.|..|+|+|.++-+--+
T Consensus 70 g~~~~~~~~~q~~~qvW~~~V~~~ll~~e 98 (145)
T PF13623_consen 70 GRSPTEQEQNQIRNQVWNQMVQNILLEQE 98 (145)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566678999999999999877543
No 461
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=26.08 E-value=6.8e+02 Score=25.10 Aligned_cols=167 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIV 408 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~ 408 (584)
+.++..++.+++.-.+.-...-..+..+...+...+.++...
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~-------------------------------------- 74 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK-------------------------------------- 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLR 488 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~ 488 (584)
.-..|+.--+.|.++...-+....+....|+........+ ..++++.+.+|+..+..++..++.|.
T Consensus 75 ---A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~-----------v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 75 ---AELALSKGREDLARAALIEKQKAQELAEALERELAAVEET-----------LAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred ---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh-----------hcccCCchHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhHHHHHHHHHhhhhhc
Q psy8072 489 IEFETNLA-----------ANEQTGPINREMRHLITSLQNHNKQ--------IKGEVNRYKRKYKETSAEIQKVRISER 548 (584)
Q Consensus 489 ~E~eq~~a-----------a~Eq~g~i~~Emr~LisSlq~~i~~--------LksEv~R~K~k~kea~~e~~~lr~~~~ 548 (584)
+....+.+ ....+......|..=|.....+... |..++.-+ .+-..+..++..|++..+
T Consensus 141 ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~~~~~~l~~~l~~l-~~~~~vd~eLa~LK~~~~ 218 (219)
T TIGR02977 141 IRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDLGRKPSLEDEFAEL-EADDEIERELAALKAKMK 218 (219)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHh-cCCChHHHHHHHHHhhhC
No 462
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=25.87 E-value=1e+03 Score=27.21 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 227 ENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 227 E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
|--.|-+.+-+|..-+|.-...|+.|+-...-++.++++|+-..-.-+.=++-++
T Consensus 311 edmaLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiin 365 (527)
T PF15066_consen 311 EDMALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIIN 365 (527)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3344556666666677777777777777777778888887776666555555554
No 463
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=25.84 E-value=4.5e+02 Score=22.91 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8072 463 QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQ-TGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKET 536 (584)
Q Consensus 463 q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq-~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea 536 (584)
+..++.+|.+|+..|..=+.=+..|+.=+.-....--. +..+-..++.|| .+|.+++.||.++..+.-+-
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL----~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELL----EEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888877666666666554442221000 013334555554 67888888888886555443
No 464
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=25.84 E-value=9.4e+02 Score=26.69 Aligned_cols=184 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhc
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVE 409 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~ 409 (584)
..+....+..+.....-..+|..++.........++....+ .+ +......-+..
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~---------------------~~-----l~~~~~~~~~~ 237 (458)
T COG3206 184 DQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQ---------------------HG-----LTDAARGQLLS 237 (458)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------cC-----CcccccchhHH
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRI 489 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~ 489 (584)
...=..+..|+.....+.-+..+.+.-.....-..+....... ..+......++.+..++...++.+..++-.-..
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~----~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p 313 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALRE----VLESPTIQDLRQQYAQVRQQIADLSTELGAKHP 313 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhH----HhccHHHHHHHHHHHHHHHHHHHHHHhhcccCh
Q ss_pred HHHHHhhhcccCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 490 EFETNLAANEQTG-PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 490 E~eq~~aa~Eq~g-~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
++....+.-.... .+..|++.++.++.++...++.+..-+..+.......+..+
T Consensus 314 ~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~ 368 (458)
T COG3206 314 QLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKL 368 (458)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
No 465
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.78 E-value=6.3e+02 Score=24.61 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 422 VLYNENQLAKTQAQEFQSH---LSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFET 493 (584)
Q Consensus 422 ~l~~e~~~lk~qL~e~r~~---Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq 493 (584)
..|.....+..+|--.|.. |..-|+.+.+++.. +...|...|.-..||.-..+-|...+.+
T Consensus 81 ~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~-----------l~~tierAE~l~sqi~vvl~yL~~dl~~ 144 (159)
T PF05384_consen 81 EAYEEAHELQVRLAMLREREKQLRERRDELERRLRN-----------LEETIERAENLVSQIGVVLNYLSGDLQQ 144 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4555556665555444443 44555544444322 3334444444444444444444444443
No 466
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.73 E-value=3.2e+02 Score=22.62 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHH
Q psy8072 231 LTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYEL 277 (584)
Q Consensus 231 Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL 277 (584)
++..+..+..+.+.+...+..+....+..+..++.+..+|+++..-+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555665555555666666666666665554443
No 467
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.68 E-value=1.4e+03 Score=28.50 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTG-PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVR 544 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g-~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr 544 (584)
+..++..++.++.+....++.+...|...+....-.. ....++..... -...+..++.++..|...++.....+..+-
T Consensus 727 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 805 (1042)
T TIGR00618 727 SSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQ-TGAELSHLAAEIQFFNRLREEDTHLLKTLE 805 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999988622212 32344443222 335578888889999888888888888876
Q ss_pred hhhcC
Q psy8072 545 ISERS 549 (584)
Q Consensus 545 ~~~~s 549 (584)
.....
T Consensus 806 ~~~~~ 810 (1042)
T TIGR00618 806 AEIGQ 810 (1042)
T ss_pred HHhhC
Confidence 66555
No 468
>KOG0244|consensus
Probab=25.63 E-value=1.4e+03 Score=28.44 Aligned_cols=267 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH----HH
Q psy8072 217 VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENH----LL 292 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~----la 292 (584)
+...-+.|..||..|.+.++.++-.-++.-..+...--.....+..+..+...+++....+..... .+... |-
T Consensus 354 ~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~---~~~~~~~~~L~ 430 (913)
T KOG0244|consen 354 LDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSN---EDASDKSASLP 430 (913)
T ss_pred chhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHh---HHhhhccccCC
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8072 293 EATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWE 372 (584)
Q Consensus 293 ~ale~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~ 372 (584)
...+.+.++..--+......++.....+..... +...-...+.--....++|+.+.+.+......-..+++.++-.
T Consensus 431 ~~~~~v~~~~~e~~~~~~~~~~e~~~~~~~~~~--~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~-- 506 (913)
T KOG0244|consen 431 KPLEPVDSGTEEIGMNTDTSGDEAAEKELSETI--GHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQ-- 506 (913)
T ss_pred ccccccccccccccccccCCCchhhhcccccCc--cchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHH--
Q ss_pred hccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8072 373 VTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQI 452 (584)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qi 452 (584)
.. ..-.+|-.+.+.+-.|-..+..++......-+...+.+..++
T Consensus 507 --------------------------~e----------~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qkl 550 (913)
T KOG0244|consen 507 --------------------------YE----------SDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKL 550 (913)
T ss_pred --------------------------Hh----------hhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 453 EMMETEELMVQKKLRGEMM------QLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 453 e~mE~~E~~~q~~l~s~v~------qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv 526 (584)
..+|....-..+.+.++.. .-+...++++.+-.++..-+-+.... -..--.-|+.-=....++..+|+++-
T Consensus 551 k~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~---~~~d~ekfr~~K~~~~Ke~~qlk~~~ 627 (913)
T KOG0244|consen 551 KSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRV---MKEDAEKFRQWKDRTEKEWNQLKGQE 627 (913)
T ss_pred HHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HHH
Q psy8072 527 NRY 529 (584)
Q Consensus 527 ~R~ 529 (584)
.++
T Consensus 628 rk~ 630 (913)
T KOG0244|consen 628 RKS 630 (913)
T ss_pred hhh
No 469
>KOG4302|consensus
Probab=25.48 E-value=1.2e+03 Score=27.82 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=31.2
Q ss_pred ccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 324 VSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKD 363 (584)
Q Consensus 324 ~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e 363 (584)
++..+++++...|.+++..=..|+.+...+..++..|...
T Consensus 157 lsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~ 196 (660)
T KOG4302|consen 157 LSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSV 196 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4447899999999999999999998877777666555443
No 470
>KOG3156|consensus
Probab=25.36 E-value=7.5e+02 Score=25.39 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHH
Q psy8072 431 KTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRH 510 (584)
Q Consensus 431 k~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~ 510 (584)
.+|.+.....+-..-+--...+ +.+...+.+++.-+.|...+|+++|++-.-+.--==-+++
T Consensus 61 ~kQAETIt~aiT~v~ndsl~~v----sk~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr-------------- 122 (220)
T KOG3156|consen 61 SKQAETITSAITTVLNDSLETV----SKELVTKAQQEKVSYQQKVDFAKIRSELVSIERSEFANLR-------------- 122 (220)
T ss_pred hhhHHHHHHHHHHHHcccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 511 LITSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 511 LisSlq~~i~~LksEv~R~K~k~ke 535 (584)
+++..|++++.|+|..+++
T Consensus 123 ------~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 123 ------AENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred ------HHHHHHHHHHHHHHHHHHH
No 471
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=25.25 E-value=5e+02 Score=23.27 Aligned_cols=69 Identities=16% Similarity=0.331 Sum_probs=46.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 218 REANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 218 ~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
......+..+..+++...-.+..+.+++..++..+......... -.++..+|+.++.++.+.+++..-+
T Consensus 9 ~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~ 77 (106)
T PF05837_consen 9 QQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVM 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666777777777777666665555444 5677888888888888888854333
No 472
>KOG4343|consensus
Probab=25.10 E-value=4.2e+02 Score=30.73 Aligned_cols=78 Identities=26% Similarity=0.233 Sum_probs=48.9
Q ss_pred CCCCCCCcccCCCccccCCCCCc-hhhcHHHHHHHHH-----HHHHHHHHHhHH-HHHHHHHHHHHHhhhhchhhHHHHH
Q psy8072 13 SSGQPPVKKVQFEPIRIGPISTL-EEMDIKVLKFQNK-----KLAQRIEQKNQV-EHELRSRIEQLEKRQTQDDAVLNVV 85 (584)
Q Consensus 13 ~~~~pp~KK~~~epi~i~~vss~-ee~D~~vLqfQn~-----kL~Q~LE~qr~~-~~~LE~rieeLe~rQ~~~D~~L~vV 85 (584)
..+.||.|+...+|+.+.+.+.. -.+|++|+.=|-+ -++++=.-||+| .-.||.||..|.+. .+.|..=
T Consensus 249 p~sn~~vr~ks~~p~~vl~~stp~~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~E----ne~Lk~E 324 (655)
T KOG4343|consen 249 PSSNSPVRGKSSVPKPVLQSSTPNVGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSE----NEQLKKE 324 (655)
T ss_pred CCCCcccccccccccccccCCCCCCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhh
Confidence 45678888788788888877766 5889999874333 334433333333 34588888888754 4456665
Q ss_pred HHHHHHHHH
Q psy8072 86 NRYWNQLNE 94 (584)
Q Consensus 86 nr~WnQL~d 94 (584)
|....+=++
T Consensus 325 NatLk~qL~ 333 (655)
T KOG4343|consen 325 NATLKRQLD 333 (655)
T ss_pred hHHHHHHHH
Confidence 655544333
No 473
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.07 E-value=4.7e+02 Score=22.89 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=27.8
Q ss_pred HHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHh
Q psy8072 250 SELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKV 298 (584)
Q Consensus 250 ~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~ 298 (584)
..+...+..+...-.+|..+||.+..+..+.+.-..-+..+|..+.+.+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666555544434445555555444
No 474
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=24.99 E-value=1.1e+03 Score=27.20 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=22.1
Q ss_pred hccCChhhhhcChhHHHHHHHHHHHHHH
Q psy8072 399 IRQLPESVIVETTEYKCLQSAYSVLYNE 426 (584)
Q Consensus 399 L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e 426 (584)
|..++.....++..|+.|+.++..+...
T Consensus 138 L~~l~~~~~~~~~i~~~Lk~e~~~lr~~ 165 (593)
T PF06248_consen 138 LDDLKSSKFEELKILKLLKDEYSELREN 165 (593)
T ss_pred HHhcCcCcccccHHHHHHHHHHHHHHHH
Confidence 7766666677789999999999888444
No 475
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=24.98 E-value=8e+02 Score=25.56 Aligned_cols=31 Identities=10% Similarity=0.248 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8072 422 VLYNENQLAKTQAQEFQSHLSASKNNQQRQI 452 (584)
Q Consensus 422 ~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qi 452 (584)
.+..++..++.++...+..+...+..+.|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~ 124 (327)
T TIGR02971 94 KLFKDVAAQQATLNRLEAELETAQREVDRYR 124 (327)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456666666666666665555553
No 476
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.97 E-value=1.7e+02 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 468 GEMMQLEDALSQIRKEYEMLRIEFET 493 (584)
Q Consensus 468 s~v~qlE~~LarvR~ere~L~~E~eq 493 (584)
.+|..+|..+++||..-|.+...+.-
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~ 30 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRR 30 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcc
Confidence 47889999999999999887776543
No 477
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.94 E-value=1.8e+02 Score=28.43 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----ccchhhh---hhccCCC
Q psy8072 334 KDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTF----NNEISWL---VWSVNPT 389 (584)
Q Consensus 334 ~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~----~~~~~~~---~~~~~~~ 389 (584)
.+.+|++.-..+=..|+..|++-+..-.+....||-+|++|. +..|.+- |-.++.|
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY 91 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAY 91 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHH
Confidence 445566665556677888888888888888889998877664 4444443 4445555
No 478
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=24.80 E-value=4.7e+02 Score=22.78 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHH------------------HHHHhhhhhhhchHHHHHHHHHHHHHHHHH
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISL------------------KISELQDAVNGKETEAAELRNQIDDLQYEL 277 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~------------------e~~~l~d~~~~~ese~~eL~~qLee~~~eL 277 (584)
.-..|..++.+||..+..=..-|..+.. +.+.+-..++.++.+|..|+..+.++.+.+
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776654444444332 444555555566666666665555555544
No 479
>PLN02678 seryl-tRNA synthetase
Probab=24.64 E-value=4.1e+02 Score=30.08 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhh---hhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQ---DAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~---d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
|..+-..++.+++.|+++...++.++..+. +..+.+..+.++|+.++..+..++..++.
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~ 99 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKA 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888888888886532 22233444556666666666666555555
No 480
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.61 E-value=5.4e+02 Score=23.90 Aligned_cols=19 Identities=26% Similarity=0.155 Sum_probs=10.0
Q ss_pred hcChhHHHHHHHHHHHHHH
Q psy8072 408 VETTEYKCLQSAYSVLYNE 426 (584)
Q Consensus 408 ~~S~~Yk~LqsQ~s~l~~e 426 (584)
.....|+.|+.+|..+.++
T Consensus 66 ~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 66 ELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3335555666666666333
No 481
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.52 E-value=7e+02 Score=24.70 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8072 477 LSQIRKEYEMLRIEFE 492 (584)
Q Consensus 477 LarvR~ere~L~~E~e 492 (584)
+..++.+...|..+++
T Consensus 112 l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 112 LEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555555
No 482
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=24.51 E-value=1e+03 Score=26.73 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHH
Q psy8072 351 DKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLA 430 (584)
Q Consensus 351 e~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~l 430 (584)
.+|..+-..|+..+++||.- +..|--+|+. .-.+-...|+..+.+++..+
T Consensus 209 ~~L~~~sd~Ll~kVdDLQD~----------------------------VE~LRkDV~~--RgvRp~~~qle~v~kdi~~a 258 (424)
T PF03915_consen 209 KKLSEESDRLLTKVDDLQDL----------------------------VEDLRKDVVQ--RGVRPSPKQLETVAKDISRA 258 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHH--H-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHH--cCCcCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 431 KTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKK---LRGEMMQLEDALSQIRKEYEMLR 488 (584)
Q Consensus 431 k~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~---l~s~v~qlE~~LarvR~ere~L~ 488 (584)
...|.....-+..++..+...-|.--..-+..|+- -+.-+.+|.++|.++-.-+.-+.
T Consensus 259 ~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lve 319 (424)
T PF03915_consen 259 SKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVE 319 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.50 E-value=3.7e+02 Score=24.45 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=3.9
Q ss_pred hHHHHHHHHHH
Q psy8072 260 ETEAAELRNQI 270 (584)
Q Consensus 260 ese~~eL~~qL 270 (584)
-.++.+|+.++
T Consensus 21 ~~~~~~LK~~~ 31 (107)
T PF06156_consen 21 LEELEELKKQL 31 (107)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 484
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=24.35 E-value=1.7e+02 Score=29.73 Aligned_cols=10 Identities=40% Similarity=0.355 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q psy8072 1 MSKRGVDCED 10 (584)
Q Consensus 1 m~~~~~~~~~ 10 (584)
||+||..|.+
T Consensus 1 MSgRGggrg~ 10 (233)
T PF11705_consen 1 MSGRGGGRGG 10 (233)
T ss_pred CCCCCCCCCC
Confidence 9988877754
No 485
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.16 E-value=6.3e+02 Score=24.03 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
|...+...+..+...+.........|..+.......+..-.+|..+++.+...+...++++.+|-
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~ 88 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLK 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555566666666666667777777788888888877777777666654
No 486
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=24.13 E-value=5.7e+02 Score=23.57 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=41.0
Q ss_pred CCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 207 GDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 207 ~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
++...++...+++++..+..-.+.++.++.. .|..+.... ..+..++.-+..++..++.++.-+.+.++++
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~---~~~~LL~q~----~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTS---NHEDLLSQA----SSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHh---CHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357788888888888888888888877663 333333222 2223333345555555555555555555433
No 487
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.09 E-value=1.1e+02 Score=30.10 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 517 NHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 517 ~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
++-..|.-+|+|+|+.++|...|+ .++..
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek 52 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQEK 52 (166)
T ss_dssp HHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 445567778888888888888888 55443
No 488
>PLN02320 seryl-tRNA synthetase
Probab=24.04 E-value=7.2e+02 Score=28.65 Aligned_cols=53 Identities=8% Similarity=0.114 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 472 QLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~ 529 (584)
++..++..+|++++.+-.++.+ +. .+.-..+++.-+..+.+++..|+.++..+
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~-~~----~~~~~~~l~~~~k~lk~~i~~le~~~~~~ 156 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKG-KL----EPSERQALVEEGKNLKEGLVTLEEDLVKL 156 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677777777777766 22 12233455554555566666666666554
No 489
>PF14282 FlxA: FlxA-like protein
Probab=24.04 E-value=5.3e+02 Score=23.12 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 475 DALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 475 ~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ke 535 (584)
..+.+|.+....|.-++...... .+-...+-+.-+..|+..|.+|++++.++.....+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~---~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD---SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555543332 22233444667778899999999999888544433
No 490
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=23.90 E-value=4.6e+02 Score=22.34 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 259 KETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 259 ~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
...++..++.++..+...+.++.+|..+|
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444445555544443
No 491
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.90 E-value=4.5e+02 Score=24.88 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=24.4
Q ss_pred chHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8072 503 PINREMRHLITS-------LQNHNKQIKGEVNRYKRKYKETSAEIQKVR 544 (584)
Q Consensus 503 ~i~~Emr~LisS-------lq~~i~~LksEv~R~K~k~kea~~e~~~lr 544 (584)
..+.|.++++.+ |+.++..=.+|+.++|.++.++...-.+|-
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666544 455555555556666666666666555553
No 492
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.89 E-value=2e+02 Score=26.19 Aligned_cols=37 Identities=11% Similarity=0.304 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 505 NREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 505 ~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
...++..+..++.++..|...+.+| ..+...+..|..
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~----~~~~~~l~~l~~ 44 (129)
T cd00584 8 LQVLQQEIEELQQELARLNEAIAEY----EQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 4456666677777777777777777 666666666644
No 493
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.76 E-value=3.8e+02 Score=29.77 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh----hhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDA----VNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~----~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.+..+-+.++.+++.|+++....+.++...... .+.+..+.++|+.++..+...+..++.
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557778888888888888888888663322 233444555555555555555544444
No 494
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.74 E-value=1e+02 Score=30.28 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=19.1
Q ss_pred hhHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 329 LDDLQKDLEEAKE---LANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 329 ~eeL~~eleE~k~---LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
++|++..|..+.+ |.+.=+.|=+.|+.++|.|..|+.+||.+
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqE 46 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQE 46 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666665554 55555667777888888888888888877
No 495
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=23.61 E-value=2.1e+02 Score=33.34 Aligned_cols=335 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHH-----------HHHHh-------hccCCCCCCCCCchHHH---------HHHHhHHHHHHHHH
Q psy8072 178 AKIIQAFDRLVQRNEKI-----------TMILK-------GELNNSNGDPIPSLDEA---------VREANIEIQTENRN 230 (584)
Q Consensus 178 ~~lv~~~d~~~~~~e~l-----------~~~l~-------~~~~~~~~~~~~d~~~~---------l~~~n~~L~~E~~~ 230 (584)
..|.+.|.......+.| +..|+ ... ...+.... |...-..|..+...
T Consensus 29 ~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~------~~~~~~~~~~L~~~~~~L~~~le~l~~~~~e 102 (619)
T PF03999_consen 29 ARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEK------DILQLEKSMPLKEQLPKLRPQLEELRKEKEE 102 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhccccccccccc------chhhhcccccchhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHH--HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCC
Q psy8072 231 LTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELR--NQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTED 308 (584)
Q Consensus 231 Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~--~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~ 308 (584)
=..++..|..+...|..++.............-..+- .+|+.++..+...+.....-...+......+......-|-.
T Consensus 103 R~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~ 182 (619)
T PF03999_consen 103 RMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGID 182 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q ss_pred C--CCCCCCCCC----CCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhh
Q psy8072 309 G--KEKDVIKPE----ETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWL 382 (584)
Q Consensus 309 ~--~~~~~~~p~----~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~ 382 (584)
+ ......... .....++..-++.|..-++++.+.-..|...++.|......|=..+..-..+ ++.+
T Consensus 183 ~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee--------~~~F 254 (619)
T PF03999_consen 183 PERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEE--------REAF 254 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--------HHHH
Q ss_pred hhccCCCCcccccchhhccCChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q psy8072 383 VWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMV 462 (584)
Q Consensus 383 ~~~~~~~~~~~~~~~~L~~l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~ 462 (584)
|-..+-++..| +..+-.|+ .....|+.+ .+-.=+..+..+|.++-..+.-.-.....+.-.+...-.
T Consensus 255 ~~~~~~ls~~~-----i~~l~~El----~RL~~lK~~--~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~-- 321 (619)
T PF03999_consen 255 LEENSGLSLDT-----IEALEEEL----ERLEELKKQ--NLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT-- 321 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccCcchHHH-----HHHHHHHH----HHHHHHHHH--hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhHHH
Q psy8072 463 QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITS------LQNHNKQIKGEVNRYKRKYKET 536 (584)
Q Consensus 463 q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisS------lq~~i~~LksEv~R~K~k~kea 536 (584)
+.-+..+|.++.+++..|+.-.--|+-.-. =...+.++..|-.+ +-+|.+.|=-|=..-|+=.++.
T Consensus 322 ----E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k----~~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkEEk~rk~i~k~l 393 (619)
T PF03999_consen 322 ----EELLELHEEEIERLKEEYESRKPILELVEK----WESLWEEMEELEESSKDPSRLNNRGGHLLKEEKERKRIQKKL 393 (619)
T ss_dssp -----------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-CCGG------HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcChhhhcccccHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHhhhhh
Q psy8072 537 SAEIQKVRISE 547 (584)
Q Consensus 537 ~~e~~~lr~~~ 547 (584)
-.=...|++.+
T Consensus 394 Pkle~~L~~~l 404 (619)
T PF03999_consen 394 PKLEEELKKKL 404 (619)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
No 496
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.38 E-value=1.2e+03 Score=26.86 Aligned_cols=199 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHH
Q psy8072 157 WDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNT 236 (584)
Q Consensus 157 ~d~~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~ 236 (584)
++..++=..|..-...-...|-.|...=-.+..+++.|...+...- .+..+-+.|..-+..|-..--
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQq-------------vfvDiinkLk~niEeLIedKY 379 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQ-------------VFVDIINKLKENIEELIEDKY 379 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhh-------------HHHHHHHHHHHHHHHHHHhHh
Q ss_pred HHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH-HHHHHHHHHhhh---hhccccCCCCCC
Q psy8072 237 KLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE-NHLLEATEKVKL---CQQMHTEDGKEK 312 (584)
Q Consensus 237 ~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~-~~la~ale~~~s---~~~~~~~~~~~~ 312 (584)
.+-..-..+--.++.|+..++-.+..+++-+.+-+.++.++.|+.--...|+ +|.++..++-++ +..+.++-
T Consensus 380 ~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~L---- 455 (527)
T PF15066_consen 380 RVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTL---- 455 (527)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----
Q ss_pred CCCCCCCCCccccchhhhHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhh
Q psy8072 313 DVIKPEETMSNVSQKKLDDLQ--------KDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLV 383 (584)
Q Consensus 313 ~~~~p~~g~~~~~~~k~eeL~--------~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~ 383 (584)
+...-...++..++ ..|+-++.--..|-+|+--|++|.+.-.+++-.=+-+ |+--+.|+|
T Consensus 456 -------skKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqk----LKs~leKLv 523 (527)
T PF15066_consen 456 -------SKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQK----LKSRLEKLV 523 (527)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHH
No 497
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.12 E-value=4.8e+02 Score=22.30 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8072 161 ELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHA 240 (584)
Q Consensus 161 e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~ 240 (584)
++=++|..+++..-.++.-+.--++.+..++..|..-..+ .....++|...|..|+.|-..-|..+-.|..
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~---------~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN---------AQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q psy8072 241 K 241 (584)
Q Consensus 241 k 241 (584)
|
T Consensus 75 k 75 (79)
T COG3074 75 K 75 (79)
T ss_pred h
No 498
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=22.85 E-value=4.2e+02 Score=23.85 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8072 475 DALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKET 536 (584)
Q Consensus 475 ~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea 536 (584)
..+.+++.+.+.+.--+.+....+..-.....+.|.+++..+....+++.+....++++|.+
T Consensus 25 ~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 25 QRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG4421|consensus
Probab=22.81 E-value=1.1e+03 Score=26.32 Aligned_cols=141 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhh-hhccccC
Q psy8072 229 RNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKL-CQQMHTE 307 (584)
Q Consensus 229 ~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s-~~~~~~~ 307 (584)
++|-.++++|.+..+-+..-.-+-+.+.+++..+++.-..-+-.++++-+-.-=|.+.|+++.....-.++. ......+
T Consensus 18 qklaqeysklraqakvlke~viee~gk~~kl~eelk~k~a~irrieaendsl~frndql~rrvenfqfe~pt~~aa~k~~ 97 (637)
T KOG4421|consen 18 QKLAQEYSKLRAQAKVLKEAVIEEQGKEAKLREELKQKAASIRRIEAENDSLGFRNDQLERRVENFQFEIPTHEAAKKKD 97 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccCCCCCccccccc
Q ss_pred CCCCCCCCCCCCCCccccchh--------hhHHHH-----hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q psy8072 308 DGKEKDVIKPEETMSNVSQKK--------LDDLQK-----DLEEAKELANNRLQEL-DKLHLQHREALKDVEKLKM 369 (584)
Q Consensus 308 ~~~~~~~~~p~~g~~~~~~~k--------~eeL~~-----eleE~k~LA~~Rl~EL-e~L~~e~~~l~~e~~~Lk~ 369 (584)
..+|+..|..+++.......- |+..+. ++-|+...-+.-+.|| +++-.+...|..+...+.|
T Consensus 98 ~~k~~~~~tqsdsaaaaaarid~~ee~l~~~~aq~erlvgeiaenerqhavemaelsekia~emr~lede~~r~~m 173 (637)
T KOG4421|consen 98 KDKGGRRGTQSDSAAAAAARIDAAEEALIFEEAQKERLVGEIAENERQHAVEMAELSEKIADEMRDLEDETERIAM 173 (637)
T ss_pred cccCCCCCCCCCcccccccccchHHHHHHHHHHHhhHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=22.72 E-value=1.2e+03 Score=26.60 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy8072 415 CLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYE--------- 485 (584)
Q Consensus 415 ~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere--------- 485 (584)
.+...+..+-.....+..++++..+.++........|++.|.......+..+...+.++-+...+=..+-.
T Consensus 56 ~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~ 135 (448)
T COG1322 56 QLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLK 135 (448)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHhhhcccCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8072 486 ---MLRIEFETNLAANEQTG-PINREMRHLITSLQNHNKQIKGEVNRYKRKYK 534 (584)
Q Consensus 486 ---~L~~E~eq~~aa~Eq~g-~i~~Emr~LisSlq~~i~~LksEv~R~K~k~k 534 (584)
+....|++.+..+...- .-..+..+=|..++..|.+|..|+.-+..-+|
T Consensus 136 ~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk 188 (448)
T COG1322 136 PLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALK 188 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Done!