Query psy8072
Match_columns 584
No_of_seqs 123 out of 147
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:40:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.6 0.00056 1.9E-08 65.7 35.1 22 470-491 218-239 (284)
2 1i84_S Smooth muscle myosin he 97.7 4.9E-05 1.7E-09 91.2 9.5 7 92-98 709-715 (1184)
3 1i84_S Smooth muscle myosin he 97.7 0.00012 4.2E-09 87.8 11.8 22 528-549 1141-1162(1184)
4 3o0z_A RHO-associated protein 96.6 0.052 1.8E-06 51.3 14.9 119 426-546 7-126 (168)
5 3na7_A HP0958; flagellar bioge 96.6 0.53 1.8E-05 46.9 23.4 31 407-437 86-116 (256)
6 2v71_A Nuclear distribution pr 96.4 0.55 1.9E-05 45.3 20.7 40 331-370 7-46 (189)
7 3na7_A HP0958; flagellar bioge 96.1 0.23 8E-06 49.5 17.8 117 411-537 53-170 (256)
8 2efr_A General control protein 95.4 1.7 5.9E-05 40.5 20.8 52 465-530 102-153 (155)
9 2v71_A Nuclear distribution pr 95.4 0.32 1.1E-05 46.9 14.5 72 466-540 47-118 (189)
10 2dfs_A Myosin-5A; myosin-V, in 94.7 0.18 6.2E-06 60.2 12.9 56 466-531 989-1044(1080)
11 2dfs_A Myosin-5A; myosin-V, in 94.1 3.1 0.0001 49.7 21.5 22 467-488 1022-1043(1080)
12 3vkg_A Dynein heavy chain, cyt 93.7 15 0.00052 48.6 28.2 26 216-241 1907-1932(3245)
13 3vkg_A Dynein heavy chain, cyt 93.3 22 0.00074 47.2 28.5 64 466-543 2040-2103(3245)
14 3s4r_A Vimentin; alpha-helix, 90.2 3.5 0.00012 35.1 11.3 59 224-282 28-91 (93)
15 3o0z_A RHO-associated protein 89.7 14 0.00047 34.9 20.5 130 210-370 8-140 (168)
16 3trt_A Vimentin; cytoskeleton, 89.6 3.8 0.00013 33.2 10.7 74 207-280 1-75 (77)
17 3oja_B Anopheles plasmodium-re 89.3 8.1 0.00028 42.1 16.5 32 416-447 454-485 (597)
18 3q8t_A Beclin-1; autophagy, AT 89.0 3.5 0.00012 35.4 10.4 89 329-445 6-94 (96)
19 3trt_A Vimentin; cytoskeleton, 87.0 2.9 9.8E-05 34.0 8.4 70 473-544 7-76 (77)
20 2v4h_A NF-kappa-B essential mo 85.1 11 0.00039 33.0 11.5 35 325-359 22-56 (110)
21 3ghg_A Fibrinogen alpha chain; 85.1 20 0.00069 39.3 15.9 129 330-501 49-195 (562)
22 3oja_B Anopheles plasmodium-re 84.5 28 0.00096 37.7 17.4 31 415-445 460-490 (597)
23 3tnu_B Keratin, type II cytosk 84.5 8.7 0.0003 34.3 11.0 19 466-484 80-98 (129)
24 3hnw_A Uncharacterized protein 83.8 7.9 0.00027 35.3 10.5 66 227-292 69-134 (138)
25 3u1c_A Tropomyosin alpha-1 cha 83.5 17 0.0006 31.1 12.1 66 217-282 7-72 (101)
26 1ic2_A Tropomyosin alpha chain 83.4 17 0.00059 29.8 12.0 71 468-545 6-76 (81)
27 3tnu_A Keratin, type I cytoske 83.2 7.8 0.00027 34.7 10.1 19 466-484 82-100 (131)
28 1ic2_A Tropomyosin alpha chain 83.0 12 0.00042 30.7 10.5 66 217-282 4-69 (81)
29 3mq7_A Bone marrow stromal ant 81.5 17 0.00058 32.3 11.1 60 472-548 43-102 (121)
30 3tnu_B Keratin, type II cytosk 81.4 19 0.00066 32.0 12.0 32 403-434 21-52 (129)
31 3u1c_A Tropomyosin alpha-1 cha 79.9 28 0.00096 29.8 12.5 59 228-286 25-83 (101)
32 3mq9_A Bone marrow stromal ant 79.6 44 0.0015 35.2 16.2 73 463-545 399-471 (471)
33 3tnu_A Keratin, type I cytoske 79.5 17 0.00059 32.4 11.0 32 403-434 23-54 (131)
34 2fxo_A Myosin heavy chain, car 79.3 34 0.0012 30.4 17.7 115 225-370 12-126 (129)
35 1go4_E MAD1 (mitotic arrest de 79.1 9.6 0.00033 33.0 8.7 65 465-534 16-92 (100)
36 2jee_A YIIU; FTSZ, septum, coi 78.8 9.2 0.00032 31.9 8.2 63 466-535 11-73 (81)
37 4h22_A Leucine-rich repeat fli 78.4 20 0.00069 31.2 10.5 61 441-526 21-81 (103)
38 3ghg_A Fibrinogen alpha chain; 77.6 28 0.00097 38.2 13.7 28 410-437 49-76 (562)
39 1deq_A Fibrinogen (alpha chain 76.1 31 0.0011 36.4 13.2 72 160-236 59-130 (390)
40 1deq_A Fibrinogen (alpha chain 75.9 84 0.0029 33.2 16.4 42 329-370 115-156 (390)
41 3u59_A Tropomyosin beta chain; 75.6 37 0.0013 28.9 12.1 66 217-282 7-72 (101)
42 3i00_A HIP-I, huntingtin-inter 74.0 24 0.00081 31.4 10.2 67 473-549 13-79 (120)
43 2eqb_B RAB guanine nucleotide 73.6 17 0.00057 31.4 8.6 58 222-279 8-65 (97)
44 3i00_A HIP-I, huntingtin-inter 73.3 14 0.00048 32.9 8.5 60 419-496 16-82 (120)
45 3u59_A Tropomyosin beta chain; 73.2 43 0.0015 28.5 12.5 53 230-282 27-79 (101)
46 2oto_A M protein; helical coil 71.6 55 0.0019 29.8 12.5 57 216-272 26-82 (155)
47 2xdj_A Uncharacterized protein 71.4 15 0.00053 30.6 7.8 34 251-284 24-57 (83)
48 2j69_A Bacterial dynamin-like 68.4 63 0.0022 36.4 14.6 53 484-541 437-493 (695)
49 2jee_A YIIU; FTSZ, septum, coi 68.2 49 0.0017 27.5 10.1 53 228-280 22-74 (81)
50 1jcd_A Major outer membrane li 68.0 16 0.00055 28.0 6.5 44 242-285 6-49 (52)
51 1xaw_A Occludin; coiled-coil, 67.9 43 0.0015 30.6 10.6 36 335-370 46-81 (140)
52 1wt6_A Myotonin-protein kinase 66.7 27 0.00092 29.1 8.1 33 219-251 14-49 (81)
53 3a7p_A Autophagy protein 16; c 65.9 61 0.0021 30.0 11.2 62 221-282 63-124 (152)
54 3hnw_A Uncharacterized protein 65.2 45 0.0015 30.2 10.3 55 466-527 80-134 (138)
55 3jsv_C NF-kappa-B essential mo 63.5 53 0.0018 28.1 9.6 20 431-450 46-65 (94)
56 3efg_A Protein SLYX homolog; x 62.7 14 0.00047 30.5 5.7 51 503-555 28-78 (78)
57 3q8t_A Beclin-1; autophagy, AT 62.3 61 0.0021 27.5 10.0 63 220-282 33-95 (96)
58 1x79_B RAB GTPase binding effe 61.0 87 0.003 27.6 11.3 80 465-547 10-89 (112)
59 3ol1_A Vimentin; structural ge 60.8 87 0.003 27.5 11.9 61 220-287 35-95 (119)
60 2zqm_A Prefoldin beta subunit 57.2 55 0.0019 27.8 9.0 43 507-549 67-109 (117)
61 3efg_A Protein SLYX homolog; x 56.0 18 0.0006 29.9 5.3 59 242-300 2-60 (78)
62 1m1j_A Fibrinogen alpha subuni 55.5 1.6E+02 0.0056 31.8 13.8 100 160-271 57-156 (491)
63 3oja_A Leucine-rich immune mol 55.2 2E+02 0.007 30.2 15.0 24 514-537 453-476 (487)
64 3mq9_A Bone marrow stromal ant 54.0 2.1E+02 0.0073 29.9 15.2 27 469-495 444-470 (471)
65 2v4h_A NF-kappa-B essential mo 53.4 1.2E+02 0.004 26.7 11.5 15 409-423 22-36 (110)
66 2js5_A Uncharacterized protein 51.7 58 0.002 26.5 7.5 61 222-289 6-66 (71)
67 1dip_A Delta-sleep-inducing pe 50.9 5.5 0.00019 32.6 1.4 60 502-563 14-77 (78)
68 2v66_B Nuclear distribution pr 50.5 1.3E+02 0.0045 26.4 15.0 66 224-289 33-98 (111)
69 3cvf_A Homer-3, homer protein 49.6 71 0.0024 26.4 7.9 42 243-284 30-71 (79)
70 2fxo_A Myosin heavy chain, car 49.5 1.4E+02 0.0047 26.4 14.8 55 226-280 69-123 (129)
71 3htk_A Structural maintenance 48.9 83 0.0028 23.8 7.9 25 505-529 35-59 (60)
72 3lbx_A Spectrin alpha chain, e 48.7 1.4E+02 0.0048 26.9 10.8 41 327-368 29-69 (161)
73 2lw1_A ABC transporter ATP-bin 48.7 90 0.0031 25.8 8.7 69 220-289 16-84 (89)
74 1wlq_A Geminin; coiled-coil; 2 48.5 43 0.0015 28.0 6.4 32 339-370 22-53 (83)
75 3a7p_A Autophagy protein 16; c 48.2 1.7E+02 0.0058 27.0 11.2 66 219-284 68-133 (152)
76 1go4_E MAD1 (mitotic arrest de 47.8 33 0.0011 29.7 5.9 25 348-372 19-43 (100)
77 2v66_B Nuclear distribution pr 47.7 1.4E+02 0.0049 26.1 15.8 24 469-492 78-101 (111)
78 3m91_A Proteasome-associated A 47.7 48 0.0017 25.2 6.1 31 228-258 11-41 (51)
79 1abz_A Alpha-T-alpha, ATA; de 46.7 13 0.00044 26.1 2.5 34 486-519 3-37 (40)
80 2eqb_B RAB guanine nucleotide 45.8 1.4E+02 0.0049 25.5 10.0 24 503-526 51-74 (97)
81 3etw_A Adhesin A; antiparallel 45.5 1.4E+02 0.0048 26.5 9.7 43 328-370 10-52 (119)
82 2xs1_A Programmed cell death 6 45.2 3.8E+02 0.013 30.2 23.7 45 471-520 653-698 (704)
83 2js5_A Uncharacterized protein 44.6 30 0.001 28.2 4.8 36 518-557 4-39 (71)
84 3nmd_A CGMP dependent protein 43.7 49 0.0017 27.0 5.9 26 262-287 41-66 (72)
85 2a3d_A Protein (de novo three- 42.7 23 0.0008 27.7 3.7 38 489-532 5-48 (73)
86 1m1j_C Fibrinogen gamma chain; 41.8 3.3E+02 0.011 28.9 13.7 24 257-280 101-124 (409)
87 1gk4_A Vimentin; intermediate 41.8 1.4E+02 0.0049 24.4 9.1 18 466-483 31-48 (84)
88 3u06_A Protein claret segregat 41.4 53 0.0018 34.9 7.6 53 221-273 5-57 (412)
89 4emc_A Monopolin complex subun 40.8 69 0.0024 30.7 7.4 44 40-83 22-65 (190)
90 3r6n_A Desmoplakin; spectrin r 40.1 3.7E+02 0.013 28.7 21.5 42 329-370 71-112 (450)
91 2efr_A General control protein 39.7 2.3E+02 0.0079 26.2 20.9 31 262-292 22-52 (155)
92 2w83_C C-JUN-amino-terminal ki 39.5 1.6E+02 0.0054 24.2 8.6 25 225-249 8-32 (77)
93 3iv1_A Tumor susceptibility ge 39.1 1.6E+02 0.0056 24.2 9.4 58 430-496 16-74 (78)
94 3bas_A Myosin heavy chain, str 39.1 1.7E+02 0.0057 24.3 10.9 65 228-292 16-80 (89)
95 2yy0_A C-MYC-binding protein; 38.9 46 0.0016 25.4 4.8 25 224-248 24-48 (53)
96 4gkw_A Spindle assembly abnorm 38.9 2.2E+02 0.0076 25.7 19.8 120 216-370 15-134 (167)
97 1s94_A S-syntaxin; three helix 38.5 1.9E+02 0.0066 26.5 10.2 31 421-451 39-69 (180)
98 1uii_A Geminin; human, DNA rep 38.4 1.3E+02 0.0046 25.1 7.9 32 339-370 30-61 (83)
99 2i1j_A Moesin; FERM, coiled-co 38.1 11 0.00037 41.9 1.7 26 345-370 505-533 (575)
100 1p9i_A Cortexillin I/GCN4 hybr 37.7 32 0.0011 22.9 3.2 24 506-529 2-25 (31)
101 1x79_B RAB GTPase binding effe 37.5 2.1E+02 0.0072 25.1 10.8 67 216-282 14-80 (112)
102 1x8y_A Lamin A/C; structural p 37.1 1.2E+02 0.004 25.1 7.5 18 466-483 33-50 (86)
103 3s4r_A Vimentin; alpha-helix, 37.0 1.9E+02 0.0064 24.3 11.3 69 217-287 11-82 (93)
104 3v86_A De novo design helix; c 37.0 50 0.0017 21.4 3.9 23 513-535 3-25 (27)
105 3csx_A Putative uncharacterize 36.6 24 0.00083 29.4 3.1 36 517-556 15-50 (81)
106 3lay_A Zinc resistance-associa 36.5 1.9E+02 0.0065 27.2 9.7 67 216-292 75-141 (175)
107 1m1j_A Fibrinogen alpha subuni 36.5 4.4E+02 0.015 28.5 15.8 127 330-498 50-193 (491)
108 1uii_A Geminin; human, DNA rep 36.2 58 0.002 27.2 5.4 34 503-540 46-79 (83)
109 4etp_A Kinesin-like protein KA 36.2 81 0.0028 33.3 8.0 25 225-249 9-33 (403)
110 3nmd_A CGMP dependent protein 35.9 1.1E+02 0.0039 24.8 6.9 42 329-370 21-62 (72)
111 4dk0_A Putative MACA; alpha-ha 35.8 2.4E+02 0.0083 28.2 11.3 36 521-556 126-165 (369)
112 3mov_A Lamin-B1; LMNB1, B-type 35.0 1.1E+02 0.0036 26.0 7.0 17 466-482 42-58 (95)
113 1x8y_A Lamin A/C; structural p 35.0 89 0.0031 25.8 6.5 23 466-488 40-62 (86)
114 1zxa_A CGMP-dependent protein 34.5 56 0.0019 26.3 4.8 46 503-548 11-56 (67)
115 2ocy_A RAB guanine nucleotide 34.4 2.8E+02 0.0096 25.6 18.2 29 412-440 45-73 (154)
116 2w6b_A RHO guanine nucleotide 34.2 1.1E+02 0.0039 23.5 6.2 43 243-289 6-48 (56)
117 1t2k_D Cyclic-AMP-dependent tr 34.2 76 0.0026 24.4 5.5 10 257-266 46-55 (61)
118 1m1j_B Fibrinogen beta chain; 34.1 4.8E+02 0.016 28.2 15.7 65 466-532 133-197 (464)
119 1wlq_A Geminin; coiled-coil; 2 34.0 59 0.002 27.2 5.0 34 504-541 39-72 (83)
120 3m91_A Proteasome-associated A 33.6 1E+02 0.0034 23.5 5.9 40 248-287 10-49 (51)
121 1ci6_A Transcription factor AT 33.5 89 0.0031 24.4 5.9 33 238-270 28-60 (63)
122 2dq0_A Seryl-tRNA synthetase; 33.3 2.8E+02 0.0096 29.6 11.7 91 466-569 36-130 (455)
123 3ol1_A Vimentin; structural ge 33.3 2.4E+02 0.0083 24.5 14.1 20 466-485 88-107 (119)
124 1wt6_A Myotonin-protein kinase 32.1 2.2E+02 0.0075 23.7 8.3 39 244-282 28-66 (81)
125 1t3j_A Mitofusin 1; coiled coi 31.6 1.9E+02 0.0066 24.7 8.0 20 217-236 45-64 (96)
126 3bas_A Myosin heavy chain, str 31.4 2.2E+02 0.0076 23.5 9.4 30 249-278 58-87 (89)
127 3hd7_B Syntaxin-1A; membrane p 31.4 2.2E+02 0.0077 24.3 8.7 60 223-282 18-77 (109)
128 1wle_A Seryl-tRNA synthetase; 31.2 1.7E+02 0.0059 31.8 9.7 60 223-282 74-144 (501)
129 3he5_B Synzip2; heterodimeric 31.1 1.6E+02 0.0054 21.7 6.4 41 230-270 7-47 (52)
130 3uun_A Dystrophin; triple heli 31.0 2.2E+02 0.0074 23.2 13.8 70 219-291 43-112 (119)
131 2yy0_A C-MYC-binding protein; 31.0 71 0.0024 24.3 4.7 26 216-241 23-48 (53)
132 3vmx_A Voltage-gated hydrogen 30.7 1.3E+02 0.0044 22.7 5.9 37 233-269 4-40 (48)
133 1gd2_E Transcription factor PA 30.6 75 0.0026 25.6 5.1 9 231-239 34-42 (70)
134 2zxx_A Geminin; coiled-coil, c 30.5 1.2E+02 0.0039 25.2 6.2 32 339-370 18-49 (79)
135 3mq7_A Bone marrow stromal ant 30.2 2.9E+02 0.0099 24.5 11.6 28 257-284 74-101 (121)
136 3iox_A AGI/II, PA; alpha helix 30.1 2.7E+02 0.0091 30.4 10.7 81 460-546 1-81 (497)
137 4aj5_1 SKA3, spindle and kinet 30.1 2.7E+02 0.0092 24.0 13.1 77 192-286 23-99 (101)
138 2dq0_A Seryl-tRNA synthetase; 30.1 1.7E+02 0.0058 31.4 9.3 60 223-282 35-97 (455)
139 2avr_X Adhesion A; antiparalle 30.0 2.7E+02 0.0091 24.7 8.9 26 415-440 68-93 (119)
140 2ocy_A RAB guanine nucleotide 29.8 3.4E+02 0.011 25.1 17.5 26 522-547 113-138 (154)
141 1m1j_C Fibrinogen gamma chain; 29.8 4.2E+02 0.014 28.0 12.2 47 247-293 84-130 (409)
142 3csx_A Putative uncharacterize 29.7 2E+02 0.0067 23.9 7.5 60 222-288 18-77 (81)
143 2w83_C C-JUN-amino-terminal ki 29.5 2.2E+02 0.0075 23.4 7.6 32 236-267 33-64 (77)
144 2e7s_A RAB guanine nucleotide 29.0 89 0.003 28.4 5.8 53 227-279 33-85 (135)
145 3uul_A Utrophin; spectrin repe 29.0 2.4E+02 0.0081 23.1 13.8 69 220-291 44-112 (118)
146 2wg5_A General control protein 28.8 38 0.0013 29.3 3.3 29 517-545 7-35 (109)
147 3cve_A Homer protein homolog 1 28.8 2.3E+02 0.008 22.9 9.7 37 247-283 28-64 (72)
148 1ez3_A Syntaxin-1A; three heli 28.8 2.7E+02 0.0092 23.6 14.5 72 421-493 8-79 (127)
149 2wvr_A Geminin; DNA replicatio 28.6 1.3E+02 0.0046 29.0 7.2 32 339-370 99-130 (209)
150 4h22_A Leucine-rich repeat fli 28.1 2.9E+02 0.01 23.9 11.0 68 424-495 11-78 (103)
151 3ghg_C Fibrinogen gamma chain; 28.0 5.7E+02 0.019 27.2 14.1 28 209-236 74-101 (411)
152 1cun_A Protein (alpha spectrin 27.9 3.4E+02 0.012 24.5 18.9 41 327-368 79-119 (213)
153 1lwu_C Fibrinogen gamma chain; 27.9 92 0.0032 32.1 6.5 44 230-273 9-52 (323)
154 3q0x_A Centriole protein; cent 27.8 2.5E+02 0.0085 27.5 9.3 55 422-491 168-222 (228)
155 3qne_A Seryl-tRNA synthetase, 27.8 5.1E+02 0.017 28.0 12.6 92 466-570 38-133 (485)
156 1l8d_A DNA double-strand break 27.8 2.7E+02 0.0092 23.3 11.5 33 257-289 67-99 (112)
157 4dzn_A Coiled-coil peptide CC- 27.7 1.3E+02 0.0043 20.3 4.8 27 506-532 5-31 (33)
158 3haj_A Human pacsin2 F-BAR; pa 27.6 5.7E+02 0.02 27.1 18.9 59 466-530 190-252 (486)
159 1lwu_C Fibrinogen gamma chain; 27.5 84 0.0029 32.4 6.1 43 240-282 5-47 (323)
160 3qne_A Seryl-tRNA synthetase, 27.4 1.8E+02 0.0062 31.6 9.0 60 223-282 37-99 (485)
161 1gk4_A Vimentin; intermediate 27.0 2.4E+02 0.0081 23.0 7.7 10 504-513 52-61 (84)
162 3fga_D Shugoshin-like 1; PP2A, 26.9 1.6E+02 0.0056 21.9 5.8 39 510-548 3-41 (47)
163 3s9g_A Protein hexim1; cyclin 26.9 2.7E+02 0.0092 24.0 8.0 20 247-266 65-84 (104)
164 3lt7_A Adhesin YADA; adhesion, 26.7 1.2E+02 0.004 24.2 5.4 38 39-76 14-51 (64)
165 3m0d_C TNF receptor-associated 26.5 2.3E+02 0.0079 22.1 8.2 53 484-546 4-56 (65)
166 1kd8_B GABH BLL, GCN4 acid bas 26.4 50 0.0017 23.4 2.8 22 512-533 10-31 (36)
167 3jsv_C NF-kappa-B essential mo 26.4 3E+02 0.01 23.4 9.7 28 466-493 45-72 (94)
168 3swf_A CGMP-gated cation chann 26.4 2.1E+02 0.007 23.4 6.9 34 257-293 17-50 (74)
169 3a7o_A Autophagy protein 16; c 26.2 32 0.0011 27.9 2.1 25 399-423 48-72 (75)
170 1ses_A Seryl-tRNA synthetase; 25.9 4E+02 0.014 28.0 11.3 61 222-282 31-92 (421)
171 3hhm_B NISH2 P85alpha; PI3KCA, 25.8 5.8E+02 0.02 26.5 16.3 41 413-453 128-168 (373)
172 3twe_A Alpha4H; unknown functi 25.8 77 0.0026 20.5 3.4 19 264-282 4-22 (27)
173 3swk_A Vimentin; cytoskeleton, 25.7 2.8E+02 0.0096 22.8 11.0 32 415-446 4-35 (86)
174 3swk_A Vimentin; cytoskeleton, 24.9 2.9E+02 0.01 22.8 11.0 59 219-284 14-72 (86)
175 4fi5_A Nucleoprotein; structur 24.5 3.2E+02 0.011 24.0 8.3 77 421-502 25-103 (113)
176 2zqm_A Prefoldin beta subunit 24.2 3.1E+02 0.011 22.9 12.1 95 403-497 5-113 (117)
177 3m9b_A Proteasome-associated A 24.2 76 0.0026 31.7 4.8 40 505-544 56-95 (251)
178 1gl2_B Syntaxin 7; membrane pr 24.1 2.5E+02 0.0086 21.7 7.7 57 225-281 8-64 (65)
179 2i1j_A Moesin; FERM, coiled-co 24.0 1E+02 0.0034 34.1 6.3 23 426-448 301-323 (575)
180 1l8d_A DNA double-strand break 23.9 3.2E+02 0.011 22.8 10.9 37 510-546 64-100 (112)
181 2dq3_A Seryl-tRNA synthetase; 23.9 1.7E+02 0.0058 31.0 7.9 60 223-282 34-96 (425)
182 1gd2_E Transcription factor PA 23.8 1.2E+02 0.0041 24.4 5.1 35 329-370 31-65 (70)
183 3etw_A Adhesin A; antiparallel 23.7 3.8E+02 0.013 23.7 14.6 31 499-529 64-94 (119)
184 1ik9_A DNA repair protein XRCC 23.6 4.1E+02 0.014 25.5 9.9 24 503-526 175-198 (213)
185 1zxa_A CGMP-dependent protein 23.6 99 0.0034 24.8 4.5 39 251-289 15-53 (67)
186 3hhm_B NISH2 P85alpha; PI3KCA, 23.4 6.4E+02 0.022 26.2 17.0 108 410-524 132-254 (373)
187 3iv1_A Tumor susceptibility ge 23.4 3.1E+02 0.011 22.6 9.5 50 225-274 17-66 (78)
188 3lay_A Zinc resistance-associa 23.4 4.6E+02 0.016 24.5 11.1 45 479-530 89-133 (175)
189 2lf0_A Uncharacterized protein 23.1 1.2E+02 0.0041 27.0 5.3 53 423-485 8-60 (123)
190 2nps_B Syntaxin 13, vesicle-as 23.1 2.7E+02 0.0093 21.8 8.7 58 225-282 5-62 (71)
191 3tul_A Cell invasion protein S 22.9 4.5E+02 0.015 24.2 12.7 75 329-435 50-124 (158)
192 1n7s_B Syntaxin 1A; neuronal s 22.6 2.7E+02 0.0093 21.6 8.3 58 224-281 10-67 (68)
193 3m9b_A Proteasome-associated A 22.0 78 0.0027 31.6 4.4 26 257-282 64-89 (251)
194 1j1d_B Troponin T, TNT; THIN f 21.7 3.9E+02 0.013 23.1 8.6 49 501-549 40-88 (106)
195 2z5i_A TM, general control pro 21.7 2.6E+02 0.009 21.0 6.4 39 457-496 9-47 (52)
196 1m1j_B Fibrinogen beta chain; 21.5 7.8E+02 0.027 26.5 17.5 31 411-441 128-158 (464)
197 2a01_A Apolipoprotein A-I; fou 21.3 5.6E+02 0.019 24.7 14.5 16 411-426 220-235 (243)
198 2zxx_A Geminin; coiled-coil, c 21.1 3.5E+02 0.012 22.3 8.8 55 209-277 13-71 (79)
199 4dk0_A Putative MACA; alpha-ha 20.9 3.9E+02 0.013 26.6 9.7 15 409-423 113-127 (369)
200 2oxj_A Hybrid alpha/beta pepti 20.8 1.2E+02 0.0042 21.1 3.8 23 470-492 3-25 (34)
201 2dgc_A Protein (GCN4); basic d 20.8 1.4E+02 0.0047 23.4 4.8 28 504-531 31-58 (63)
202 1fxk_C Protein (prefoldin); ar 20.7 2E+02 0.0068 25.0 6.5 111 248-366 2-116 (133)
203 1jth_B Syntaxin 1A; coiled-coi 20.7 3.2E+02 0.011 21.7 8.7 59 224-282 8-66 (77)
204 3mov_A Lamin-B1; LMNB1, B-type 20.6 2.7E+02 0.0091 23.5 6.9 39 244-282 34-72 (95)
205 3uul_A Utrophin; spectrin repe 20.4 3.5E+02 0.012 22.0 8.8 32 412-443 79-110 (118)
206 3swy_A Cyclic nucleotide-gated 20.3 2.5E+02 0.0085 20.9 5.8 41 251-294 2-42 (46)
207 2e7s_A RAB guanine nucleotide 20.2 4.2E+02 0.014 23.9 8.5 40 507-546 86-125 (135)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.58 E-value=0.00056 Score=65.66 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8072 470 MMQLEDALSQIRKEYEMLRIEF 491 (584)
Q Consensus 470 v~qlE~~LarvR~ere~L~~E~ 491 (584)
+..++..+..++.+++.+...+
T Consensus 218 ~~~~~~~l~~l~~~~~~~~~~~ 239 (284)
T 1c1g_A 218 EDKYEEEIKVLSDKLKEAETRA 239 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.75 E-value=4.9e-05 Score=91.23 Aligned_cols=7 Identities=57% Similarity=0.724 Sum_probs=3.5
Q ss_pred HHHHHHH
Q psy8072 92 LNEDIRI 98 (584)
Q Consensus 92 L~ddi~l 98 (584)
+++.|++
T Consensus 709 vlE~iri 715 (1184)
T 1i84_S 709 VLEGIRI 715 (1184)
T ss_dssp HHHHHHH
T ss_pred chHHHHh
Confidence 4455554
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.70 E-value=0.00012 Score=87.85 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHhhhhhcC
Q psy8072 528 RYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 528 R~K~k~kea~~e~~~lr~~~~s 549 (584)
.+....++...++..|+.....
T Consensus 1141 ~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1141 KAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555444
No 4
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.60 E-value=0.052 Score=51.34 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q psy8072 426 ENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPI 504 (584)
Q Consensus 426 e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i 504 (584)
.+++|..||++...+|.++-.+..+--+. ..|+.. .+.++..+-.|.+.+..+.+.+++|.-++-..-+.-++....
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~--~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKS--HTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888877766554322 334444 334677777788888888888888888887777776677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 505 NREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 505 ~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
...+-.++.-++.+|..|..|+.|.|.++..+..|...|-..
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek 126 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM 126 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999888888877766443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.59 E-value=0.53 Score=46.89 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=19.3
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 407 IVETTEYKCLQSAYSVLYNENQLAKTQAQEF 437 (584)
Q Consensus 407 I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~ 437 (584)
+.+..+|..|+..+..+-.++..+..++.+.
T Consensus 86 v~~~kE~~aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 86 IKSERELRSLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766655555555433
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.37 E-value=0.55 Score=45.26 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 331 DLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 331 eL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
....++.-.+.+|..=.++++.++.++..-+..-..|..+
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E 46 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE 46 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666655555555555555
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.14 E-value=0.23 Score=49.50 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEMLRI 489 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~ 489 (584)
..+..++.+...+-.++..++..+..++..|...+++..-. .+.. ...+..++..+|+.+..+....+.+..
T Consensus 53 ~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~-------aL~kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 53 EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELR-------SLNIEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666665666666666666666666555422111 1111 112566777888888888888888777
Q ss_pred HHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy8072 490 EFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETS 537 (584)
Q Consensus 490 E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~ 537 (584)
.++...+. -.....++.++-..+...+..++.++..+..+-.+..
T Consensus 126 ~l~~~~~~---l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~ 170 (256)
T 3na7_A 126 KQEDLKKE---MLELEKLALELESLVENEVKNIKETQQIIFKKKEDLV 170 (256)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665553 3355556667777777777777777777755444333
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.42 E-value=1.7 Score=40.55 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 465 KLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYK 530 (584)
Q Consensus 465 ~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K 530 (584)
+|...|.++|+.|..-...|..+.-++.+++.. +++++.-+--|.++|.|+|
T Consensus 102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e--------------l~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK--------------VEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhcccchHHHHHHHHHhh
Confidence 388899999999999999999998888877764 3334666777888888885
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.40 E-value=0.32 Score=46.90 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEI 540 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~ 540 (584)
|+.+|.+++..+..++.....|..+++..+.. -..+..|.-..+++|++++.+|......++.++++.-..-
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K---~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEK---LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444333 1234446677888999999999998888887777665443
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.70 E-value=0.18 Score=60.15 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKR 531 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~ 531 (584)
++.++..++.++.+..++++.|+.+..+.. .++...+++|.+++..|+.++..+..
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~----------~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666655444433 37778888999999888888888763
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.10 E-value=3.1 Score=49.73 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLR 488 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~ 488 (584)
...|..|+.+++.+|.+.++|.
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.74 E-value=15 Score=48.63 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=15.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAK 241 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~k 241 (584)
.+.+...++.....+|+.=+++|..-
T Consensus 1907 ll~~K~~el~~~~~rl~~GL~KL~et 1932 (3245)
T 3vkg_A 1907 LINEKRDQLEEEQLHLNIGLKKLRDT 1932 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666655543
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.31 E-value=22 Score=47.23 Aligned_cols=64 Identities=11% Similarity=0.201 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKV 543 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~l 543 (584)
++.+|+++.+++.....+++.|..+.+.... =+..-..=|..|.+|-.||....++-...+..|
T Consensus 2040 le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~--------------kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2040 LEKSIATYKEEYATLIRETEQIKTESSKVKN--------------KVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 3444444445555555555555554443332 233344556777778778855555555444444
No 14
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.18 E-value=3.5 Score=35.13 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----hHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 224 IQTENRNLTEQNTKLHAKYHS-----ISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~-----ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
|..+|+.|...+..++.+... |..++..++..+..+..+..+|..+++.++.+++..+.
T Consensus 28 LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 28 LEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444433222 44555555666666666666666666666666655555
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.68 E-value=14 Score=34.90 Aligned_cols=130 Identities=19% Similarity=0.199 Sum_probs=87.2
Q ss_pred CCchHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8072 210 IPSLDEAVREANIEIQTENR---NLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDK 286 (584)
Q Consensus 210 ~~d~~~~l~~~n~~L~~E~~---~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~K 286 (584)
...+..+|.++|..|..|.. +|+...+.++.....+....+.|++.+..++.....|..++-.++..|+.-++--
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r-- 85 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR-- 85 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45577788888888877654 6777888888888888888889999999999999999999999988888766511
Q ss_pred hHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 287 LENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEK 366 (584)
Q Consensus 287 L~~~la~ale~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~ 366 (584)
.+..+.+. +. ..++..|..+++..+.--.+=..+-..|++.+..+-++...
T Consensus 86 --~q~se~~~----------el-----------------q~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 86 --GHDSEMIG----------DL-----------------QARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp --HHHHHHHH----------HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHH----------HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111110 00 01345566666666665555556666666666666666666
Q ss_pred hhhh
Q psy8072 367 LKMD 370 (584)
Q Consensus 367 Lk~~ 370 (584)
+.++
T Consensus 137 ~eid 140 (168)
T 3o0z_A 137 LEID 140 (168)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6655
No 16
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=89.58 E-value=3.8 Score=33.21 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=50.1
Q ss_pred CCCCCchHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy8072 207 GDPIPSLDEAVREANIEIQTENRNLTEQNTK-LHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKV 280 (584)
Q Consensus 207 ~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~-L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~ 280 (584)
|++++|+...|.++-.....-+.+-+..+.. .+.|..++........+.+...++++.+|+..+..++.+|+-.
T Consensus 1 ~~~~~DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 1 GGSKPDCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467888888877766666666555555544 3466666777777777777777777777777777777777654
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.34 E-value=8.1 Score=42.06 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8072 416 LQSAYSVLYNENQLAKTQAQEFQSHLSASKNN 447 (584)
Q Consensus 416 LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~ 447 (584)
++.....+-.++..++.++......++..+..
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455544444444444443
No 18
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=88.97 E-value=3.5 Score=35.37 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=67.2
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIV 408 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~ 408 (584)
.+.+..++..++.--+.=+.+|.++..+...+..++..++.+ ...+..+-..
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E----------------------------~~~L~~eE~~ 57 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAE----------------------------AERLDQEEAQ 57 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------------------HHHHhhHHHH
Confidence 366777888888888888899999999999999999999988 5555554444
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy8072 409 ETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASK 445 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R 445 (584)
-=..|..++-|+-.+.++...++.+++-....|...|
T Consensus 58 ~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 58 YQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777777777777777777777777776665544
No 19
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=87.02 E-value=2.9 Score=33.95 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8072 473 LEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVR 544 (584)
Q Consensus 473 lE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr 544 (584)
|..-|+.||.+||.+-...-.-..+ .-..-+.|+...+..-.+.+...+.|+..+|+.+.-...||.+||
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~--~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEE--WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556788899998886544332211 011345678888888888889999999999999999999998887
No 20
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.15 E-value=11 Score=33.05 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=26.3
Q ss_pred cchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 325 SQKKLDDLQKDLEEAKELANNRLQELDKLHLQHRE 359 (584)
Q Consensus 325 ~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~ 359 (584)
+...+.+|...|..+.++.+....++++|.++...
T Consensus 22 ~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 22 ASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33458899988888888888877777777776544
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.06 E-value=20 Score=39.28 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=74.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhc
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVE 409 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~ 409 (584)
+.|+..+++.-.=..+|+.+|...-++++...+++...-.. +-+.|+ ..+..
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~------------------------~~E~Lr----~rq~q 100 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTN------------------------IMEILR----GDFSS 100 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------------HHHTTS----SHHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHH------------------------HHHHHH----HHHHh
Confidence 77777777777777788887777777776666665554322 001122 11111
Q ss_pred ChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHH------
Q psy8072 410 TTEYKCLQSAYS-VLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALS-QIR------ 481 (584)
Q Consensus 410 S~~Yk~LqsQ~s-~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~La-rvR------ 481 (584)
.........||+ .|.+++.-|+..++.--..+++.|.....| +.+|.+||-++. |+|
T Consensus 101 ~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq---------------~~kIQRLEvDIdiqirsCKgsC 165 (562)
T 3ghg_A 101 ANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ---------------LVDMKRLEVDIDIKIRSCRGSC 165 (562)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHGGGTB
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhccccc
Confidence 123333344444 454555555555554444455555544444 445555665553 222
Q ss_pred ----------HHHHHHHHHHHHHhhhcccC
Q psy8072 482 ----------KEYEMLRIEFETNLAANEQT 501 (584)
Q Consensus 482 ----------~ere~L~~E~eq~~aa~Eq~ 501 (584)
+.|+.++-.++|..+.+-++
T Consensus 166 sr~~~~~vd~~sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 166 SRALAREVDLKDYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred cchheeecchHHHHHHHHHHHHHhhcccCC
Confidence 58999999999999987665
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.52 E-value=28 Score=37.71 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy8072 415 CLQSAYSVLYNENQLAKTQAQEFQSHLSASK 445 (584)
Q Consensus 415 ~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R 445 (584)
.+......+..+.......+...+..++..+
T Consensus 460 ~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~ 490 (597)
T 3oja_B 460 ELRAEVQQLTNEQIQQEQLLQGLHAEIDTNL 490 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444444444444444444444444433
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.45 E-value=8.7 Score=34.26 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEY 484 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~er 484 (584)
+...|..+|..|+++|.+-
T Consensus 80 ~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 4445555555555554443
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.76 E-value=7.9 Score=35.27 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q psy8072 227 ENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLL 292 (584)
Q Consensus 227 E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la 292 (584)
|.-.++..+..|......+..++..|...+...+-++..+..++++++.++...++++.+|+.++-
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666677777777777888888888888888888888888888888876554
No 25
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.53 E-value=17 Score=31.12 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=40.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 217 VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
+++.=..|..+..+....+..+..+.+............+..+..+++.++++||.+...|..+..
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666666666666666666666666666666666666666666666666666555
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.43 E-value=17 Score=29.78 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 468 GEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 468 s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
..|..+..+.-......+.+..++.+.-.. ....-.-|.+|+..|.+|+.++.++..++.+++..+..-+.
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~-------~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEER-------SKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555544332 34455668899999999999999999999999988765543
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.18 E-value=7.8 Score=34.71 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEY 484 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~er 484 (584)
+...|..+|..|+++|.+-
T Consensus 82 ~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 82 IQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554443
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.98 E-value=12 Score=30.69 Aligned_cols=66 Identities=11% Similarity=0.206 Sum_probs=41.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 217 VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
|++.-..|..+..+....+..+..+.+............+..+.-+++.|++++|.+...|..+..
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666666666666666666666666666666666666666666666
No 29
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.45 E-value=17 Score=32.28 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhc
Q psy8072 472 QLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISER 548 (584)
Q Consensus 472 qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~ 548 (584)
+-|.+-+-|-.--..|++-++..++. . ++++.-|++|+..++.+++++.+++..||+...
T Consensus 43 ~~eaQAaTCNqTV~tL~~SL~~ekaq---~--------------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 43 DVEAQAATANHTVMALMASLDAEKAQ---G--------------QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 34555566666666777777766653 0 567888999999999999999999999999865
No 30
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.35 E-value=19 Score=31.99 Aligned_cols=32 Identities=6% Similarity=-0.003 Sum_probs=8.6
Q ss_pred ChhhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 403 PESVIVETTEYKCLQSAYSVLYNENQLAKTQA 434 (584)
Q Consensus 403 ~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL 434 (584)
...+-.++..-+..+..+..+-..+..|..++
T Consensus 21 ~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el 52 (129)
T 3tnu_B 21 QQTAGRHGDDLRNTKHEISEMNRMIQRLRAEI 52 (129)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555533333334444
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.87 E-value=28 Score=29.81 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDK 286 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~K 286 (584)
+..++..+..+..+....-.++..|+-++..++.++..+...|.++...|+..++....
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~ 83 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555555556666666666666666666554433
No 32
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.62 E-value=44 Score=35.25 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy8072 463 QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQK 542 (584)
Q Consensus 463 q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~ 542 (584)
+..++.+|.+....+.++|++-..-..-.-. +. .-+..-++.-+++|.-|++||..+-.+++++.++|..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMA-LM---------ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335666666666666666654332221111 11 0111223334468899999999999999999999988
Q ss_pred hhh
Q psy8072 543 VRI 545 (584)
Q Consensus 543 lr~ 545 (584)
+|+
T Consensus 469 ~~~ 471 (471)
T 3mq9_A 469 LRR 471 (471)
T ss_dssp HHC
T ss_pred hcC
Confidence 874
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.46 E-value=17 Score=32.44 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=6.0
Q ss_pred ChhhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 403 PESVIVETTEYKCLQSAYSVLYNENQLAKTQA 434 (584)
Q Consensus 403 ~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL 434 (584)
...+..++..-+..+..+..+-..+..|..++
T Consensus 23 ~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el 54 (131)
T 3tnu_A 23 NREVATNSELVQSGKSEISELRRTMQNLEIEL 54 (131)
T ss_dssp ------------------CHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555533333334444
No 34
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.30 E-value=34 Score=30.42 Aligned_cols=115 Identities=22% Similarity=0.329 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhcc
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQM 304 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~ 304 (584)
..+...+...+..|..++.........+......+..++..|..+|..-+.-+..+.-+..+|...-.+ ++
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~e-Le-------- 82 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQ-LE-------- 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HH--------
Confidence 355667777777777777777777778888888889999999988888888877777766666542211 10
Q ss_pred ccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 305 HTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 305 ~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.++.++...+++.....+.=..+-.++..+...|.++++.+...
T Consensus 83 ----------------------~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 83 ----------------------AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13566666666666666665666666777777777777766543
No 35
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=79.06 E-value=9.6 Score=33.04 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccC----C-------chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 465 KLRGEMMQLEDALSQIRKEYEMLRIEFETNL-AANEQT----G-------PINREMRHLITSLQNHNKQIKGEVNRYKRK 532 (584)
Q Consensus 465 ~l~s~v~qlE~~LarvR~ere~L~~E~eq~~-aa~Eq~----g-------~i~~Emr~LisSlq~~i~~LksEv~R~K~k 532 (584)
.++.+|..|+.+..++|.+.+.|+.+++.+. .. +.. + |...-++ +..+.+..|+.|+.|+|.+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~G-d~~~~~TKVlH~~~NPa~~a~~----~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQG-DYDQSRTKVLHMSLNPTSVARQ----RLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS-CCCTTTEEEEEESSCHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCccCeeeeecCChHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999843 22 211 1 3322222 3468888999999999776
Q ss_pred hH
Q psy8072 533 YK 534 (584)
Q Consensus 533 ~k 534 (584)
.+
T Consensus 91 v~ 92 (100)
T 1go4_E 91 LR 92 (100)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.78 E-value=9.2 Score=31.94 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~ke 535 (584)
|+++|.+.=++++-++-+.++|.-+-.... .-+.+.+.=..+|..+|.+|+.|..-|..+++.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~-------~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLS-------QEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555565555555555555555555444433 457777877888999999999999988766654
No 37
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=78.40 E-value=20 Score=31.16 Aligned_cols=61 Identities=28% Similarity=0.406 Sum_probs=43.2
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHH
Q psy8072 441 LSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNK 520 (584)
Q Consensus 441 Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~ 520 (584)
|+.+|+++.=+| +. |+..+..+|..+++++.++.+..-+++..+. .++.|+..+.
T Consensus 21 LDNEKsal~YqV------dl-----LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr--------------~~~~L~~~~~ 75 (103)
T 4h22_A 21 LDNEKTNFMYQV------DT-----LKDMLLELEEQLAESRRQYEEKNKEFEREKH--------------AHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred hccHHHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 456677777765 22 7788888888888888888887777666444 4666666666
Q ss_pred HHHHHH
Q psy8072 521 QIKGEV 526 (584)
Q Consensus 521 ~LksEv 526 (584)
.|++++
T Consensus 76 ~lk~~L 81 (103)
T 4h22_A 76 EVKEAL 81 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.63 E-value=28 Score=38.16 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEF 437 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~ 437 (584)
+..=-.|-.|-.++-++++.|+.+|+++
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 3555567888899999999999999998
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.14 E-value=31 Score=36.38 Aligned_cols=72 Identities=11% Similarity=0.249 Sum_probs=44.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHH
Q psy8072 160 EELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNT 236 (584)
Q Consensus 160 ~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~ 236 (584)
...+..+..|+...+..|..+.+.+...+.-+..|...++.... ...+.+..+.+.+++|...+..|+.-++
T Consensus 59 dk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~-----q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 59 DEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA-----KANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----hhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888887777777777777776542 1334333333444444444444444333
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.89 E-value=84 Score=33.17 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=37.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.++|+..+.-+++=....+..|..|+..+..+..++++|.++
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888889999999999999999999999
No 41
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.63 E-value=37 Score=28.92 Aligned_cols=66 Identities=8% Similarity=0.205 Sum_probs=36.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 217 VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
+++.=..|..+..+....+..+..+.+..........+.+..+.-+++.++.++|.+...|..+..
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556666666666666665555555555555555555555555555555555555554
No 42
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.03 E-value=24 Score=31.45 Aligned_cols=67 Identities=10% Similarity=0.252 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 473 LEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 473 lE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
.+..+-.+..+-+.|+.+++--+. |-+..|..|.+++.+|++|+.-.|.-..+|..|..-||.+...
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~----------E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKT----------ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777776544 6778888999999999999999987777788888888877654
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.58 E-value=17 Score=31.37 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSK 279 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k 279 (584)
..+..+...|+..+..+..+...+..++..-+......+.++..+..+||++++-|..
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777777788888888888888888877753
No 44
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=73.33 E-value=14 Score=32.93 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q psy8072 419 AYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKE-------YEMLRIEF 491 (584)
Q Consensus 419 Q~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~e-------re~L~~E~ 491 (584)
++..|+.++..|+.+++.....-+.. ...|+.+|.+||.+|+.-|+. .+.|+.++
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~------------------v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~ 77 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRV------------------VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAEL 77 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666664443222222 333666777777777766655 55566666
Q ss_pred HHHhh
Q psy8072 492 ETNLA 496 (584)
Q Consensus 492 eq~~a 496 (584)
+....
T Consensus 78 ~~l~~ 82 (120)
T 3i00_A 78 DELRR 82 (120)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65443
No 45
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=73.17 E-value=43 Score=28.51 Aligned_cols=53 Identities=13% Similarity=0.272 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 230 NLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 230 ~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.++..+..+.........++..++-++..++.++......|.+++..|+..++
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek 79 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEK 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444455555555555544444
No 46
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=71.57 E-value=55 Score=29.83 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=27.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHH
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDD 272 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee 272 (584)
.+...|+.|..++..+...+..+...+..+..++..|......++.+++.+..+++.
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~ 82 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDL 82 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444444444455555544444444444444444444433
No 47
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=71.44 E-value=15 Score=30.63 Aligned_cols=34 Identities=32% Similarity=0.591 Sum_probs=29.5
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 251 ELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 251 ~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
.++..+..++.++.+|+|++|+..+++....++-
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667778999999999999999999999998744
No 48
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=68.42 E-value=63 Score=36.42 Aligned_cols=53 Identities=11% Similarity=0.215 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhcccCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8072 484 YEMLRIEFETNLAANEQTGPINREMRHLITSL----QNHNKQIKGEVNRYKRKYKETSAEIQ 541 (584)
Q Consensus 484 re~L~~E~eq~~aa~Eq~g~i~~Emr~LisSl----q~~i~~LksEv~R~K~k~kea~~e~~ 541 (584)
++.+..+++..+.. .+..+|......+ .+-+..|..++.+|-.+|-++..++.
T Consensus 437 ~~~~~~~~~~~l~~-----~i~~~f~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (695)
T 2j69_A 437 REAFNAALQKAFEQ-----YITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQIT 493 (695)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443 4555666555544 34456688889999999999988877
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.23 E-value=49 Score=27.54 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKV 280 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~ 280 (584)
+.-||-++..|..|+-.+..+.+.++.....+..++.+|+.+...-+.+|...
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666665555555556666666666555555444443
No 50
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=67.98 E-value=16 Score=28.01 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=30.3
Q ss_pred HHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8072 242 YHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRND 285 (584)
Q Consensus 242 hk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~ 285 (584)
-..|+.+++.|-.++..+.+++..|+..+..+..|..++..|++
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455566666666667777777777777788888888887554
No 51
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=67.95 E-value=43 Score=30.65 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 335 DLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 335 eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+....++.-+.-..|-..|+.++..+.+++..|-.+
T Consensus 46 qR~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~ 81 (140)
T 1xaw_A 46 QRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKE 81 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888889999999999999999888
No 52
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=66.66 E-value=27 Score=29.11 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHH
Q psy8072 219 EANIEIQTENRN---LTEQNTKLHAKYHSISLKISE 251 (584)
Q Consensus 219 ~~n~~L~~E~~~---Lq~~~~~L~~khk~ls~e~~~ 251 (584)
.+.+.|..|++. ++.+++++.+-+..+..+++.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~e 49 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLRE 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666554 344444444444444444433
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=65.94 E-value=61 Score=30.02 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
++.+...+..|+..++.|..+.+.+..++..-...+.....++.-|.-++.-+...+.+.+.
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777777777776666444444444444444444444444444444333
No 54
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.23 E-value=45 Score=30.22 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVN 527 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~ 527 (584)
++.++..++..++.+.++--.++.++++.... +.+++.=+..|+.++.-|++++.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e-------~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKE-------IKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555655555555555554443 44455555555555555555443
No 55
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.54 E-value=53 Score=28.09 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q psy8072 431 KTQAQEFQSHLSASKNNQQR 450 (584)
Q Consensus 431 k~qL~e~r~~Lq~~R~~~~~ 450 (584)
++|++-|+.-+.++|.++.+
T Consensus 46 k~Qv~IY~~DF~aERadREk 65 (94)
T 3jsv_C 46 KAQADIYKADFQAERHAREK 65 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888874433
No 56
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=62.73 E-value=14 Score=30.54 Aligned_cols=51 Identities=8% Similarity=0.113 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCc
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGY 555 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~ 555 (584)
..+.++-..|...+..|..|+.+|..+..|+++..... ......-++|.||
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~~--~~~~~~e~~PPHY 78 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL--FADAADEPPPPHY 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCccCC
Confidence 45667777888889999999999999999998877542 1111111577776
No 57
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=62.28 E-value=61 Score=27.51 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
....+-.++..++.....|......|-.+++.++-.+...+.+..-+.++++-++.-|++.++
T Consensus 33 e~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 33 NRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566667777777777777777777777666666666666666666666666666666554
No 58
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=60.98 E-value=87 Score=27.56 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8072 465 KLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVR 544 (584)
Q Consensus 465 ~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr 544 (584)
+|..++.++..+|.+.+.++.+|...+.+...+ ..+-+.++..-+..=+..+..|+.-..-.|+...+--+.+..=|
T Consensus 10 ~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~---~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 10 KLQLMLRQANDQLEKTMKDKQELEDFIKQSSED---SSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677788888888888888888887665554 55666666666666555555565555555544444444444434
Q ss_pred hhh
Q psy8072 545 ISE 547 (584)
Q Consensus 545 ~~~ 547 (584)
.++
T Consensus 87 e~V 89 (112)
T 1x79_B 87 EQV 89 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 59
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.76 E-value=87 Score=27.46 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
.+..|..++.+++..++.+..|+..- .......++++..|+..+|++..--...+.+++-|
T Consensus 35 e~a~l~leldn~~~~~edfk~KyE~E-------~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 35 DKARVEVERDNLAEDIMRLREKLQEE-------MLQREEAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 45666666677777777666665432 23345567777777777777766555555544444
No 60
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.22 E-value=55 Score=27.82 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 507 EMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 507 Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
.....+..+.+++..++.++.++..++.....++..++.....
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666777777766666666666666655444
No 61
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.96 E-value=18 Score=29.86 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=39.0
Q ss_pred HHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhh
Q psy8072 242 YHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKL 300 (584)
Q Consensus 242 hk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s 300 (584)
|+.++..-..+.+.+..++.++.-....++++-.-+-+-.+.+++|...+....++++.
T Consensus 2 ~~~~~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 2 HEQLSPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777788888888888888888888888888778887766665555444
No 62
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=55.46 E-value=1.6e+02 Score=31.76 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=54.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8072 160 EELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLH 239 (584)
Q Consensus 160 ~e~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~ 239 (584)
...+.....|+...+..|..+.+.+...+.-...|...++... .+....++-..+-...|+..+.-|+
T Consensus 57 ~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~------------~q~~dndn~~~e~S~eLe~ri~yIK 124 (491)
T 1m1j_A 57 DDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGL------------EGAQQLDENYGHVSTELRRRIVTLK 124 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH------------hhhccchhHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777666666655555666665532 1111222333333444444444444
Q ss_pred HHHHHhHHHHHHhhhhhhhchHHHHHHHHHHH
Q psy8072 240 AKYHSISLKISELQDAVNGKETEAAELRNQID 271 (584)
Q Consensus 240 ~khk~ls~e~~~l~d~~~~~ese~~eL~~qLe 271 (584)
.+--.-...|+.||..+.....++++|+.-++
T Consensus 125 ~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 125 QRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555655555443
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.20 E-value=2e+02 Score=30.19 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q psy8072 514 SLQNHNKQIKGEVNRYKRKYKETS 537 (584)
Q Consensus 514 Slq~~i~~LksEv~R~K~k~kea~ 537 (584)
.+...+..+..++..-+.+|++|.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 453 RLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhcccHHHHHH
Confidence 334444444444444444444443
No 64
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.99 E-value=2.1e+02 Score=29.88 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEFETNL 495 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~eq~~ 495 (584)
+|..+|.++..+-++.+.+++++++.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666777777777777777777766544
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.36 E-value=1.2e+02 Score=26.68 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=10.7
Q ss_pred cChhHHHHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVL 423 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l 423 (584)
....|.||+.++...
T Consensus 22 ~~~ei~~L~~~L~~A 36 (110)
T 2v4h_A 22 ASMQLEDLRQQLQQA 36 (110)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 445788888777776
No 66
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=51.66 E-value=58 Score=26.48 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
.+|..++++|....+..-..-|.++..+ -..=.+|-++..+.=++..+|..+++++..|+.
T Consensus 6 ~eLkkevkKL~~~A~q~kmdLHDLaEdL-------P~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~~ 66 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKMDLHDLAEDL-------PTGWNRIMEVAEKTYEAYRQLDEFRKSTASLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHST-------TTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888888887776 777788888888999999999999996666653
No 67
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=50.93 E-value=5.5 Score=32.63 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC--CCCCC--cccccCCCC
Q psy8072 502 GPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS--PWPSG--YRLHAGGSG 563 (584)
Q Consensus 502 g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s--~~~~~--~~~~~~~~~ 563 (584)
+.-++.+|.-|.-|.++|.+|+.|..-||.-+-- .-+.++..+..+ ++|.. ..-|.|||+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~asp--Eql~q~q~~l~~~~~~~~~~~~~~~~~gsa 77 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLASP--EQLEKFQSRLSPEEPAPETPEAPEAPGGSA 77 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--SCSCCCSSSSCCCCCSSSCCSSCCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHhccCCCCCCCCCCCCccccCCCC
Confidence 3556778888999999999999999999432211 123333333333 33332 245788886
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.53 E-value=1.3e+02 Score=26.39 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
....+..||..++.|+..+..|...++.+.-..+-++-...-....|+|+...|..+--|..=|+.
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~ 98 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLES 98 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555555556655555555554444444
No 69
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.56 E-value=71 Score=26.44 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 243 HSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 243 k~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
+.+-..+...+.+....+++++.+-+.|+---.||-..|.-+
T Consensus 30 ~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 30 RAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344445555556666666666666666666666666633
No 70
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.54 E-value=1.4e+02 Score=26.38 Aligned_cols=55 Identities=11% Similarity=0.275 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy8072 226 TENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKV 280 (584)
Q Consensus 226 ~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~ 280 (584)
..+.+|...-..|..+.+.+...+....+....+.++.+.|..++.++.-+++..
T Consensus 69 E~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555555554444433
No 71
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.94 E-value=83 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 505 NREMRHLITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 505 ~~Emr~LisSlq~~i~~LksEv~R~ 529 (584)
...+..=+++..+.|..+++++..|
T Consensus 35 ~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 35 INEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444666677777777777665
No 72
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=48.70 E-value=1.4e+02 Score=26.91 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=34.3
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 327 KKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLK 368 (584)
Q Consensus 327 ~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk 368 (584)
.+...+....+.+..++..|...|+... ........+..+.
T Consensus 29 ~r~~~l~~rw~~L~~~a~~R~~~Le~s~-~lq~F~~d~~el~ 69 (161)
T 3lbx_A 29 ERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLG 69 (161)
T ss_dssp GHHHHGGGHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4578888899999999999999999987 6777777777765
No 73
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.67 E-value=90 Score=25.79 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=46.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
++-....|...|-..|..|.++...+..++.. -+.....-.++..+..+++++..+|+.+.-|..-|+.
T Consensus 16 LSykeqrEle~le~~Ie~LE~~i~~le~~lad-p~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 16 LSYKLQRELEQLPQLLEDLEAKLEALQTQVAD-ASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777777777776632 1222345577888888888888888888887766653
No 74
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=48.51 E-value=43 Score=28.03 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 339 AKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 339 ~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.+.||..|-.-|.+..+||..|.++++.++.+
T Consensus 22 Wk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eE 53 (83)
T 1wlq_A 22 WKEVAEQRRKALYEALKENEKLHKEIEQKDSE 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888999999998888888888777
No 75
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.18 E-value=1.7e+02 Score=27.05 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=44.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 219 EANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 219 ~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
..-..|..++..|+..+..|....+.-..-+..++|.+..++.+...++..+..++.|-...=.|+
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777666666666666777777777777777777777776665555533
No 76
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.80 E-value=33 Score=29.65 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8072 348 QELDKLHLQHREALKDVEKLKMDWE 372 (584)
Q Consensus 348 ~ELe~L~~e~~~l~~e~~~Lk~~~~ 372 (584)
.+++.|..|+..|.+++..|.++++
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888899999999999888854
No 77
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=47.70 E-value=1.4e+02 Score=26.10 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEFE 492 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~e 492 (584)
-+.++|..+-+....-=.|..|+.
T Consensus 78 SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 78 SLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444444444
No 78
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.69 E-value=48 Score=25.21 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNG 258 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~ 258 (584)
...|+..+..|-+++..|..-++..++++..
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~ 41 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLA 41 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777766444333333
No 79
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=46.74 E-value=13 Score=26.13 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhcccCC-chHHHHHHHHHHHHHHH
Q psy8072 486 MLRIEFETNLAANEQTG-PINREMRHLITSLQNHN 519 (584)
Q Consensus 486 ~L~~E~eq~~aa~Eq~g-~i~~Emr~LisSlq~~i 519 (584)
=|.+..||.+++-|.-| +++.|+|.|-.-|..+|
T Consensus 3 wlkarveqelqaleargtdsnaelrameaklkaei 37 (40)
T 1abz_A 3 WLKARVEQELQALEARGTDSNAELRAMEAKLKAEI 37 (40)
T ss_dssp HHHHHHHHHHHHHHHTCSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 35667777777767788 99999999977666554
No 80
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.76 E-value=1.4e+02 Score=25.54 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv 526 (584)
.+..|+-.|-.||=++=.-|-+.-
T Consensus 51 ~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 51 KLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444443333
No 81
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=45.54 E-value=1.4e+02 Score=26.49 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=21.3
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 328 KLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 328 k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.+..|+++++-+...=.-|..+....-+.-...+.+...|+..
T Consensus 10 ~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~ 52 (119)
T 3etw_A 10 ELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNE 52 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666665555555555555444444434444444444444
No 82
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=45.16 E-value=3.8e+02 Score=30.15 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-chHHHHHHHHHHHHHHHH
Q psy8072 471 MQLEDALSQIRKEYEMLRIEFETNLAANEQTG-PINREMRHLITSLQNHNK 520 (584)
Q Consensus 471 ~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g-~i~~Emr~LisSlq~~i~ 520 (584)
.+.+..++++...|+... ++..++. .| ....+|..++..+++...
T Consensus 653 ~~re~~~~~l~~ay~~y~-el~~~l~----eG~~FY~~L~~~~~~~~~~~~ 698 (704)
T 2xs1_A 653 NLREEVLKNLATAYDNFV-ELVANLK----EGTKFYNELTEILVRFQNKCS 698 (704)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777776332 2333333 45 667777766666665543
No 83
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=44.57 E-value=30 Score=28.16 Aligned_cols=36 Identities=8% Similarity=0.328 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCccc
Q psy8072 518 HNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYRL 557 (584)
Q Consensus 518 ~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~~~ 557 (584)
.+..|+.+|.++++++-++..+++-|=++ .|.||..
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd----LP~~w~~ 39 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED----LPTGWNR 39 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTTSGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc----chhhHHH
Confidence 46789999999999999999999999553 7777753
No 84
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.70 E-value=49 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 262 EAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 262 e~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
.|++|+.+|++...++...+..++|+
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444433333
No 85
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=42.67 E-value=23 Score=27.67 Aligned_cols=38 Identities=29% Similarity=0.526 Sum_probs=26.2
Q ss_pred HHHHHHhhhcccCCchHHHHHHH------HHHHHHHHHHHHHHHHHHHhh
Q psy8072 489 IEFETNLAANEQTGPINREMRHL------ITSLQNHNKQIKGEVNRYKRK 532 (584)
Q Consensus 489 ~E~eq~~aa~Eq~g~i~~Emr~L------isSlq~~i~~LksEv~R~K~k 532 (584)
+||.|++++ |..-+..| +.++.++|...++|++-||.|
T Consensus 5 aefkqrlaa------iktrlqalggseaelaafekeiaafeselqaykgk 48 (73)
T 2a3d_A 5 AEFKQRLAA------IKTRLQALGGSEAELAAFEKEIAAFESELQAYKGK 48 (73)
T ss_dssp HHHHHHHHH------HHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456666665 33333333 567899999999999999855
No 86
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.83 E-value=3.3e+02 Score=28.93 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=10.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKV 280 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~ 280 (584)
...++.+..|++.++..+..+...
T Consensus 101 ~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 101 LAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444444444333333
No 87
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.78 E-value=1.4e+02 Score=24.38 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKE 483 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~e 483 (584)
+...|..+|..|+++|.+
T Consensus 31 ~q~~i~~lE~eL~~~r~e 48 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 88
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.41 E-value=53 Score=34.87 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHH
Q psy8072 221 NIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDL 273 (584)
Q Consensus 221 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~ 273 (584)
...|..|+..|++.+.+|..+++.+..++..+.+++...+.+-+.|-+++.++
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777777777776666666655555555555555554444
No 89
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.85 E-value=69 Score=30.66 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhchhhHHH
Q psy8072 40 IKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLN 83 (584)
Q Consensus 40 ~~vLqfQn~kL~Q~LE~qr~~~~~LE~rieeLe~rQ~~~D~~L~ 83 (584)
+.-|+.+|..|.++|+.+..++..|+.++..++......|+.+.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 34678888999999999999999999999999999988887775
No 90
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=40.13 E-value=3.7e+02 Score=28.68 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=33.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
...|...++++.+++..|...|+.|++=+..+..+..=++-+
T Consensus 71 ~~~L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~Wi~EK 112 (450)
T 3r6n_A 71 IYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDC 112 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998877776666666555544
No 91
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=39.73 E-value=2.3e+02 Score=26.15 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q psy8072 262 EAAELRNQIDDLQYELSKVQSRNDKLENHLL 292 (584)
Q Consensus 262 e~~eL~~qLee~~~eL~k~~rr~~KL~~~la 292 (584)
++.++.+.|+.+...++.++.++..|+..|-
T Consensus 22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~ 52 (155)
T 2efr_A 22 EVARLKKLLERAEERAELSEGKSAELEEELK 52 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333666666666666666665555554443
No 92
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=39.52 E-value=1.6e+02 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKI 249 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~ 249 (584)
..|+.+|-.+.+.|.+-+-.+-.--
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk 32 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVK 32 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444
No 93
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=39.13 E-value=1.6e+02 Score=24.25 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 430 AKTQAQEFQSHLSASKNNQQRQIEMMETEELMV-QKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 430 lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~-q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~a 496 (584)
++..+..+++.|++.|.. .+|+.. +.+++..|.+++.+-+.|.+..+.|.-+.++--.
T Consensus 16 l~E~~~q~qaEl~sLrrT---------~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRT---------EEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHH---------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666677777777651 335544 6778989999999999999998888887776543
No 94
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.12 E-value=1.7e+02 Score=24.32 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q psy8072 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLL 292 (584)
Q Consensus 228 ~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la 292 (584)
...+...+..+..++-........+......+..++..|..++.++.........+-..|+..+.
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555666666666665544444444433333334444333
No 95
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.94 E-value=46 Score=25.39 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLK 248 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e 248 (584)
|..|+..|+..+..|...|.++..+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 96
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=38.90 E-value=2.2e+02 Score=25.75 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=58.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEAT 295 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~al 295 (584)
.|..-...+..|...-|.+++.+-.-..+-.-+.-.++-....-+.++..|+.++..++-.++|+.. -|.+
T Consensus 15 ~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~---~Lkr------ 85 (167)
T 4gkw_A 15 DLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQ---LLKR------ 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHH---HHHh------
Confidence 3333334444444444444443332222222333333334444455566666666666666666655 2222
Q ss_pred HHhhhhhccccCCCCCCCCCCCCCCCccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 296 EKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 296 e~~~s~~~~~~~~~~~~~~~~p~~g~~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
++..+ ..-+.+..++.+|++++.|--.+..+= .+-.-.|.+++++=+.+
T Consensus 86 ---n~~qQ----------------nQQSlDiRKLrELEADLKEKDsMVe~L-------T~TiG~LrKELEdEklK 134 (167)
T 4gkw_A 86 ---NSQQQ----------------NQQSLDMRKLGELEADLKEKDSMVESL-------TETIGILRKELENEKLK 134 (167)
T ss_dssp ---HHHHH----------------HHHHHHHHHTHHHHHTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred ---hhHHH----------------hHhhhhHHHHHHHHhHHhhhhHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 11010 011245578999999998877776554 33444444444444433
No 97
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=38.54 E-value=1.9e+02 Score=26.46 Aligned_cols=31 Identities=6% Similarity=0.196 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy8072 421 SVLYNENQLAKTQAQEFQSHLSASKNNQQRQ 451 (584)
Q Consensus 421 s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~q 451 (584)
..+++++..++..++.++..+...+..|.+-
T Consensus 39 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~ 69 (180)
T 1s94_A 39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSDI 69 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888777777665543
No 98
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.39 E-value=1.3e+02 Score=25.06 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 339 AKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 339 ~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.+.||..|-.=|.+.-+||..|.++++.|+.+
T Consensus 30 Wk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eE 61 (83)
T 1uii_A 30 WKEVAEKRRKALYEALKENEKLHKEIEQKDNE 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999998888888888877
No 99
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=38.12 E-value=11 Score=41.86 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy8072 345 NRLQELD---KLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 345 ~Rl~ELe---~L~~e~~~l~~e~~~Lk~~ 370 (584)
.|+..++ .++..++.|..+++.++.+
T Consensus 505 eR~~~~ekn~~lq~qL~~L~~el~~~r~~ 533 (575)
T 2i1j_A 505 DRRTLAERNERLHNQLKALKQDLARSCDE 533 (575)
T ss_dssp GCCCHHHHCHHHHHHHHHHHHHHHTTBCG
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 3444443 5777778888888888877
No 100
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=37.73 E-value=32 Score=22.94 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 506 REMRHLITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 506 ~Emr~LisSlq~~i~~LksEv~R~ 529 (584)
+.+..|+.||..+|+||+.-|..+
T Consensus 2 dqlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999988766
No 101
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=37.55 E-value=2.1e+02 Score=25.10 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.+..++..|.++...-..+-+.++.+-.+...+++.|.+.+...++.+.+|+...-.++.+...-..
T Consensus 14 ~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~ 80 (112)
T 1x79_B 14 MLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666677888888888899888888888888888888777766655444333
No 102
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.15 E-value=1.2e+02 Score=25.13 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKE 483 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~e 483 (584)
+...|..+|..|+++|.+
T Consensus 33 ~q~~i~~lE~el~~~r~e 50 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRAR 50 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 103
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.03 E-value=1.9e+02 Score=24.32 Aligned_cols=69 Identities=28% Similarity=0.302 Sum_probs=41.6
Q ss_pred HHHHhHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 217 VREANIEIQT---ENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 217 l~~~n~~L~~---E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
|+.+|+.|.. .+.-|..+...|..+...+..+-. ..-....+++|.+|+.+++++..+-.++.-.++.|
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666654 355566666666666655543321 12233457888888888888887766666544443
No 104
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=37.01 E-value=50 Score=21.37 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 513 TSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 513 sSlq~~i~~LksEv~R~K~k~ke 535 (584)
-.|.++.+.|++||+-+|...|+
T Consensus 3 yqlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHHhc
Confidence 35678889999999888766654
No 105
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=36.60 E-value=24 Score=29.40 Aligned_cols=36 Identities=14% Similarity=0.323 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcCCCCCCcc
Q psy8072 517 NHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYR 556 (584)
Q Consensus 517 ~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s~~~~~~~ 556 (584)
+.+..|+.+|.++++++-++..++|-|=++ .|.||.
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEd----LP~~w~ 50 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEG----LPTDYE 50 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHH----TTTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chhhHH
Confidence 567789999999999999999999999665 677764
No 106
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.46 E-value=1.9e+02 Score=27.16 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=43.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLL 292 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la 292 (584)
+++++-.+...+...|+. +-...-.+++.+-..-+-+++++..|..++.+++.++...+- +....++
T Consensus 75 ql~~I~~e~r~~~~~Lr~-------ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~---k~~~em~ 141 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQ-------QLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV---KRDVAMA 141 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 444444444444444433 333344455556666678899999999999999999998876 5555443
No 107
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=36.46 E-value=4.4e+02 Score=28.49 Aligned_cols=127 Identities=11% Similarity=0.105 Sum_probs=80.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhhc
Q psy8072 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVE 409 (584)
Q Consensus 330 eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~~ 409 (584)
+.|+..++++..=..+|..+|...-.++....+.....=.. +.
T Consensus 50 CrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~----------------------------~~--------- 92 (491)
T 1m1j_A 50 CRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVE----------------------------TI--------- 92 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH----------------------------HH---------
T ss_pred cchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHH----------------------------HH---------
Confidence 77777777777777777777776666655444444333322 22
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIR-------- 481 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR-------- 481 (584)
...+.-+.|....-|.++++..+|+.-..-|+-.-+....+|..+.. ....++.+|.+||.++.--+
T Consensus 93 -~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~----~l~~q~skIQRLE~dI~~q~~~Cr~pC~ 167 (491)
T 1m1j_A 93 -NILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQN----SIQEQVVEMKRLEVDIDIKIRACKGSCA 167 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTTTTBS
T ss_pred -HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 34445566777777777777777776666666655555555422211 12236778888888876543
Q ss_pred ---------HHHHHHHHHHHHHhhhc
Q psy8072 482 ---------KEYEMLRIEFETNLAAN 498 (584)
Q Consensus 482 ---------~ere~L~~E~eq~~aa~ 498 (584)
+.|+.++-.+++..+.+
T Consensus 168 r~~~y~VD~~~Ye~~QKqLeQv~a~d 193 (491)
T 1m1j_A 168 RSFDYQVDKEGYDNIQKHLTQASSID 193 (491)
T ss_dssp SCCCCCCCTTTTHHHHHHHHHHTTCC
T ss_pred hhHHhhhcHHHHHHHHHHHHHhhccc
Confidence 47899999999986654
No 108
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.23 E-value=58 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEI 540 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~ 540 (584)
.-|.+++..|.+++++|..||.++.++ ++.+..+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL----~elae~~ 79 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKEL----AEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 347788889999999999999999999 5554443
No 109
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.17 E-value=81 Score=33.31 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKI 249 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~ 249 (584)
..++.+|+..+..|....+.+..++
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~ 33 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGM 33 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333333333
No 110
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.95 E-value=1.1e+02 Score=24.82 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=22.6
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+.+|+..+.+-.+--..+-.-++.+..++...-.++..|+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444433344444555555666666666666655
No 111
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=35.75 E-value=2.4e+02 Score=28.16 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhcC----CCCCCcc
Q psy8072 521 QIKGEVNRYKRKYKETSAEIQKVRISERS----PWPSGYR 556 (584)
Q Consensus 521 ~LksEv~R~K~k~kea~~e~~~lr~~~~s----~~~~~~~ 556 (584)
..+.++...+..++.++.++..++..... .|-+|+-
T Consensus 126 ~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V 165 (369)
T 4dk0_A 126 NAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTV 165 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEE
Confidence 33444444444445556666666555433 3445543
No 112
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.03 E-value=1.1e+02 Score=26.04 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRK 482 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ 482 (584)
+...|..+|..|+++|.
T Consensus 42 ~q~~i~~lE~eL~~~r~ 58 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRD 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 113
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=34.97 E-value=89 Score=25.85 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLR 488 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~ 488 (584)
++.++.++..++++...+|.+|-
T Consensus 40 lE~el~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 40 KEREMAEMRARMQQQLDEYQELL 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777776653
No 114
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=34.46 E-value=56 Score=26.27 Aligned_cols=46 Identities=7% Similarity=0.198 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhc
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISER 548 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~ 548 (584)
++..++..++.....+|..|+.++........+....+++++.-..
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778888888888999999988888887777777888877765543
No 115
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.44 E-value=2.8e+02 Score=25.60 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 412 EYKCLQSAYSVLYNENQLAKTQAQEFQSH 440 (584)
Q Consensus 412 ~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~ 440 (584)
.|..|....+++-.+...|...|.+.+..
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~ 73 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENEL 73 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 45555566666655555555555544443
No 116
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=34.19 E-value=1.1e+02 Score=23.54 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=30.6
Q ss_pred HHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 243 HSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 243 k~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
|.+..-.=+++|.+..++.+.+.|...+|+- .++|+++.++-+
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEeE----qkARk~LE~~vr 48 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEEE----QRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4455555578888888888888888888765 478886555544
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.18 E-value=76 Score=24.42 Aligned_cols=10 Identities=30% Similarity=0.225 Sum_probs=3.7
Q ss_pred hhchHHHHHH
Q psy8072 257 NGKETEAAEL 266 (584)
Q Consensus 257 ~~~ese~~eL 266 (584)
..++.++..|
T Consensus 46 ~~L~~e~~~L 55 (61)
T 1t2k_D 46 TLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 118
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.13 E-value=4.8e+02 Score=28.17 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRK 532 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k 532 (584)
.+.++..++..+.....+.|.+...+.+.... +....++.++.++..+...|..|++.+.-+..+
T Consensus 133 ~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~--~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 133 TQKQRKDNDIILSEYNTEMELHYNYIKDNLDN--NIPSSLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666667777777777777777665542 122567777778888888888888887655433
No 119
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.95 E-value=59 Score=27.18 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8072 504 INREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQ 541 (584)
Q Consensus 504 i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~ 541 (584)
-|..++..|+.++++|..|+.+..++ ++.+..+.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L----~elA~~~q 72 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 47778888999999999999999999 55554443
No 120
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.58 E-value=1e+02 Score=23.46 Aligned_cols=40 Identities=15% Similarity=0.347 Sum_probs=21.8
Q ss_pred HHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8072 248 KISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287 (584)
Q Consensus 248 e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL 287 (584)
.+..++..+..+-.++.+|...|.++..+|.+....+++|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555555556666666666666665555544443
No 121
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.51 E-value=89 Score=24.38 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=14.7
Q ss_pred HHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHH
Q psy8072 238 LHAKYHSISLKISELQDAVNGKETEAAELRNQI 270 (584)
Q Consensus 238 L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qL 270 (584)
|+.+++.+..+-..|...++.++.++..|++-|
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344344444455555555555444
No 122
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.34 E-value=2.8e+02 Score=29.64 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
++.+--++..++..+|++++.+.-++.+.+.+ |.-..+ +..++..|+.++..+..++++...++..+=.
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~----~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKRRKK----GEPVDE-------LLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCCTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667778888898888888876653 322223 3334444455555554444555655554422
Q ss_pred hhcCCCCCCcccccCCCCCc----cccc
Q psy8072 546 SERSPWPSGYRLHAGGSGFD----SRWG 569 (584)
Q Consensus 546 ~~~s~~~~~~~~~~~~~~~~----~~~~ 569 (584)
.. |-..|-++-.|..-.| .+||
T Consensus 105 ~i--pN~~~~~vP~g~~e~~n~~~~~~g 130 (455)
T 2dq0_A 105 RL--PNITHPSVPVGKDENDNVPIRFWG 130 (455)
T ss_dssp TS--CCCCCTTSCCCSSGGGCEEEEEES
T ss_pred hC--CCCCCccCCCCCCCCCCEEEEEcC
Confidence 22 4444455566655444 3476
No 123
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=33.34 E-value=2.4e+02 Score=24.53 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYE 485 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere 485 (584)
++++|.-|.++|.=+++-++
T Consensus 88 LE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455544444444444443
No 124
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.14 E-value=2.2e+02 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=25.4
Q ss_pred HhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 244 SISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 244 ~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.++.+++..++..-..++++++.+..-.++..++.+.++
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666
No 125
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=31.64 E-value=1.9e+02 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q psy8072 217 VREANIEIQTENRNLTEQNT 236 (584)
Q Consensus 217 l~~~n~~L~~E~~~Lq~~~~ 236 (584)
+-....+|..|++.|...+.
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33345556666666666655
No 126
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.42 E-value=2.2e+02 Score=23.51 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q psy8072 249 ISELQDAVNGKETEAAELRNQIDDLQYELS 278 (584)
Q Consensus 249 ~~~l~d~~~~~ese~~eL~~qLee~~~eL~ 278 (584)
+....+.+..+.....+|.+.|.++..+++
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666677777777777788888877776653
No 127
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=31.35 E-value=2.2e+02 Score=24.30 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
+-..++.+++.-+..|+.-++.+..-.......++..+.-+.....-++....+|.++.+
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999888888888888888888888888888888864
No 128
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=31.23 E-value=1.7e+02 Score=31.82 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-----------hhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQDA-----------VNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~-----------~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.|..+-+.++..++.|+++...++.++..+... ...+..+.++|+.++.++..++..++.
T Consensus 74 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888888765422 223445555555555555555554444
No 129
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.10 E-value=1.6e+02 Score=21.68 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHH
Q psy8072 230 NLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQI 270 (584)
Q Consensus 230 ~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qL 270 (584)
.|+..+..|...+-.+...-+.+..-++-++.++.+|++++
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444443433333444444445555555555556665554
No 130
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=30.97 E-value=2.2e+02 Score=23.23 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=31.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHH
Q psy8072 219 EANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHL 291 (584)
Q Consensus 219 ~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~l 291 (584)
+....+..++..-+..+..+...-..+...-....+.....+.++..|...++.+......-.+ +|+..|
T Consensus 43 ~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~---~Le~aL 112 (119)
T 3uun_A 43 HTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQS---NLHRVL 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3344555555555555555555444443322111122233444555555555555444433333 555444
No 131
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.97 E-value=71 Score=24.34 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=11.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8072 216 AVREANIEIQTENRNLTEQNTKLHAK 241 (584)
Q Consensus 216 ~l~~~n~~L~~E~~~Lq~~~~~L~~k 241 (584)
.|+..|++|..++..|...+..|.++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 132
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=30.71 E-value=1.3e+02 Score=22.69 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHH
Q psy8072 233 EQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQ 269 (584)
Q Consensus 233 ~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~q 269 (584)
..+.+|..-+..+..++.+++..++..+.||.+|..-
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3455666666666777777777777777777766543
No 133
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.57 E-value=75 Score=25.62 Aligned_cols=9 Identities=33% Similarity=0.335 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy8072 231 LTEQNTKLH 239 (584)
Q Consensus 231 Lq~~~~~L~ 239 (584)
|...+..|.
T Consensus 34 LE~~v~~le 42 (70)
T 1gd2_E 34 LETQVVTLK 42 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 134
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.55 E-value=1.2e+02 Score=25.21 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 339 AKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 339 ~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.+.||..|-.=|.+.-+||..|-++++.++.+
T Consensus 18 Wk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eE 49 (79)
T 2zxx_A 18 WKEVAEQRRKALYEALKENEKLHKEIEQKDSE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888999999999999999888877
No 135
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.19 E-value=2.9e+02 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=13.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
..++-||+.|...|.++.+++++.++..
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444555555555555555555433
No 136
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=30.10 E-value=2.7e+02 Score=30.40 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy8072 460 LMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAE 539 (584)
Q Consensus 460 ~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e 539 (584)
+.....+.+.++.-..+|+||.++...+.++.+..+++ ...-+.++++=-.+.+.+|..-|... ..++..-+.+
T Consensus 1 a~~~a~yq~~la~yq~elarvqkana~aka~Ye~~~ae---~~a~n~~i~aeNeaikkrNa~aka~Y---e~~l~kY~~d 74 (497)
T 3iox_A 1 AANEADYQAKLTAYQTELARVQKANADAKAAYEAAVAA---NNAANAALTAENTAIKKRNADAKADY---EAKLAKYQAD 74 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred HHHhhhh
Q psy8072 540 IQKVRIS 546 (584)
Q Consensus 540 ~~~lr~~ 546 (584)
+.+.+++
T Consensus 75 lakY~~~ 81 (497)
T 3iox_A 75 LAKYQKD 81 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 137
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=30.07 E-value=2.7e+02 Score=24.03 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHH
Q psy8072 192 EKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQID 271 (584)
Q Consensus 192 e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLe 271 (584)
..|-.+|.+.. .+.+..--.+--+|..|+..|...+..++.|++.=+.++....-....+..+
T Consensus 23 a~L~~al~~ed--------sd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~r--------- 85 (101)
T 4aj5_1 23 ARLQRALDGEE--------SDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEK--------- 85 (101)
T ss_dssp HHHHHHHHTCS--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHhcccc--------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---------
Confidence 44556777653 2444444455678899999999999999999988888886665555544444
Q ss_pred HHHHHHHHHHhHHHh
Q psy8072 272 DLQYELSKVQSRNDK 286 (584)
Q Consensus 272 e~~~eL~k~~rr~~K 286 (584)
...++.+++...+|
T Consensus 86 -ns~DI~~ire~fqK 99 (101)
T 4aj5_1 86 -NSMDIMKIREYFQK 99 (101)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHH
Confidence 34466666654444
No 138
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.06 E-value=1.7e+02 Score=31.35 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh---hhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQD---AVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d---~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.|..+-+.++..++.|+++...++.++..+.. ....+..+.++|+.++.++..++..++.
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888889999999999999876532 2344556666667776666666666665
No 139
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=29.97 E-value=2.7e+02 Score=24.75 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 415 CLQSAYSVLYNENQLAKTQAQEFQSH 440 (584)
Q Consensus 415 ~LqsQ~s~l~~e~~~lk~qL~e~r~~ 440 (584)
-.+++|..|.+++..+..+|+..-..
T Consensus 68 ~yK~eY~~L~KkYk~~~~~Ld~eI~~ 93 (119)
T 2avr_X 68 FYKSQYQELASKYEDALKKLEAEMEQ 93 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555546666544333
No 140
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.81 E-value=3.4e+02 Score=25.08 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhh
Q psy8072 522 IKGEVNRYKRKYKETSAEIQKVRISE 547 (584)
Q Consensus 522 LksEv~R~K~k~kea~~e~~~lr~~~ 547 (584)
++-.+..++..++|+..-+..+...+
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666665555443
No 141
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.76 E-value=4.2e+02 Score=28.04 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=27.5
Q ss_pred HHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Q psy8072 247 LKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLE 293 (584)
Q Consensus 247 ~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ 293 (584)
.+.+.+.+++..+++.+..-..++..++..|...+.+++.|...+..
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~ 130 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQ 130 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444555556666666666666666666666666655555544433
No 142
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=29.67 E-value=2e+02 Score=23.95 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~ 288 (584)
.+|..++++|.......--.-|.++.++ -..=.+|-++..+.=++..+|..+++++..++
T Consensus 18 ~eLkkevkKL~~~A~q~kmdLHDLaEdL-------P~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 18 ADLKKKVRKLNSKAGQMKMDLHDLAEGL-------PTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHT-------TTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888776 77777888888888888889999888554443
No 143
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.45 E-value=2.2e+02 Score=23.42 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhchHHHHHHH
Q psy8072 236 TKLHAKYHSISLKISELQDAVNGKETEAAELR 267 (584)
Q Consensus 236 ~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~ 267 (584)
++|-++--+++-+...++..+...+.-..+++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333333333333333333333333
No 144
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.02 E-value=89 Score=28.38 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy8072 227 ENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSK 279 (584)
Q Consensus 227 E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k 279 (584)
+...|...+..+..+...+..++..-+......+.++..+..+||++++-|..
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 85 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555556566666666777777777777777776653
No 145
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=28.95 E-value=2.4e+02 Score=23.06 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHH
Q psy8072 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHL 291 (584)
Q Consensus 220 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~l 291 (584)
....+..++..-+..++.+...-..+...-....+.....+.++..|...++.+......-.+ +|+..|
T Consensus 44 ~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~---~L~~aL 112 (118)
T 3uul_A 44 THETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQS---RLHDAL 112 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 334455555555555555555444443322111112233444444444444444433333222 555444
No 146
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=28.79 E-value=38 Score=29.33 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 517 NHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 517 ~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
-+|.+|+.+...+++++++...++..|+.
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999976
No 147
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.76 E-value=2.3e+02 Score=22.93 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=21.9
Q ss_pred HHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhH
Q psy8072 247 LKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSR 283 (584)
Q Consensus 247 ~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr 283 (584)
..+...+.+....+++++.+-+.|+---.+|-..+.-
T Consensus 28 ~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~ 64 (72)
T 3cve_A 28 QRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDN 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555555666666666666666666666666653
No 148
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.75 E-value=2.7e+02 Score=23.64 Aligned_cols=72 Identities=8% Similarity=0.213 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 421 SVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFET 493 (584)
Q Consensus 421 s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq 493 (584)
..+++++..++..++.++..+...+..|.+-+-.+..++ .....++.-+.+.-.....|+..-+.|....+.
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~-~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDE-KTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888888888877777766543222211 223334444444444555555555555554443
No 149
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=28.63 E-value=1.3e+02 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 339 AKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 339 ~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.+.||..|-.=|.+..+||..|.++++.|+.+
T Consensus 99 Wk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eE 130 (209)
T 2wvr_A 99 WKEVAEKRRKALYEALKENEKLHKEIEQKDNE 130 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888999999999998888888877
No 150
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=28.10 E-value=2.9e+02 Score=23.87 Aligned_cols=68 Identities=7% Similarity=0.180 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 424 YNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNL 495 (584)
Q Consensus 424 ~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~ 495 (584)
|+..+-.++|||-.++-|.=.-+.+...+++++..=++.+.+++ ..-.++.+.+...+.|..++....
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~----eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYE----EKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666678888877776444444444466666554444333322 223334455555555555554433
No 151
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=28.03 E-value=5.7e+02 Score=27.15 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=17.5
Q ss_pred CCCchHHHHHHHhHHHHHHHHHHHHHHH
Q psy8072 209 PIPSLDEAVREANIEIQTENRNLTEQNT 236 (584)
Q Consensus 209 ~~~d~~~~l~~~n~~L~~E~~~Lq~~~~ 236 (584)
+.++.+..+.+.+..+..|..+++..+.
T Consensus 74 ~~~~n~~~~~q~Skkml~~~~~~~~~~~ 101 (411)
T 3ghg_C 74 SKPNMIDAATLKSRKMLEEIMKYEASIL 101 (411)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666655544
No 152
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=27.93 E-value=3.4e+02 Score=24.51 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=29.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 327 KKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLK 368 (584)
Q Consensus 327 ~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk 368 (584)
.++.+|......+..++..|...|+.... .......+..+.
T Consensus 79 ~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-~~~f~~~~~e~~ 119 (213)
T 1cun_A 79 QRLAQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEEEE 119 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 35788888899999999999999998764 334444444433
No 153
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.89 E-value=92 Score=32.11 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHH
Q psy8072 230 NLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDL 273 (584)
Q Consensus 230 ~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~ 273 (584)
+|.+++.+|.........++..|+..+...+++|.+|+.+|.++
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444445555554444433
No 154
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=27.84 E-value=2.5e+02 Score=27.54 Aligned_cols=55 Identities=18% Similarity=0.348 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 422 VLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEF 491 (584)
Q Consensus 422 ~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~ 491 (584)
.+..+++.+|..+......|+.++. | ...+.+.+++....+|++|..||.+..|.
T Consensus 168 yLa~R~~~lK~kl~~l~~~L~~~~~------------e---~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T 3q0x_A 168 FLAFRLSEVKGTCHDLSDDLSRTRD------------D---RDSMVAQLAQCRQQLAQLREQYDKHLLEV 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------H---HHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 3334444456666555555555543 1 22256677777888899999999887764
No 155
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.84 E-value=5.1e+02 Score=28.05 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRI 545 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~ 545 (584)
++.+--++..++..+|++++.+.-++-+.+.+.+.. ..+..++..|+.++..+..++++...++..+=.
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~-----------~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDA-----------KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566678888888888887776642222 223334444455555554444555555554322
Q ss_pred hhcCCCCCCcccccCCCCCcc----cccc
Q psy8072 546 SERSPWPSGYRLHAGGSGFDS----RWGR 570 (584)
Q Consensus 546 ~~~s~~~~~~~~~~~~~~~~~----~~~~ 570 (584)
.. |-..+-++-.|....|. +||-
T Consensus 107 ~i--PN~~~~~vP~g~~e~~n~~v~~~g~ 133 (485)
T 3qne_A 107 QV--GNIVHESVVDSQDEENNELVRTWTP 133 (485)
T ss_dssp TS--CCCCCTTSCCCSCGGGCEEEEEECC
T ss_pred hC--CCCCCccCCCCCCccCCEEEEEeCC
Confidence 22 43344455556554443 5763
No 156
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.77 E-value=2.7e+02 Score=23.32 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=17.1
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
...+.++..+..++.++..++...++.+..|..
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444443
No 157
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.72 E-value=1.3e+02 Score=20.35 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 506 REMRHLITSLQNHNKQIKGEVNRYKRK 532 (584)
Q Consensus 506 ~Emr~LisSlq~~i~~LksEv~R~K~k 532 (584)
.-++.-|.+|.++|..|+=|+.-+|+.
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 335555677777777777777766554
No 158
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=27.58 E-value=5.7e+02 Score=27.06 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQ----NHNKQIKGEVNRYK 530 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq----~~i~~LksEv~R~K 530 (584)
++..+.+....+...+.+|......++.. ......+|..++..+| +||..|+.-+..|-
T Consensus 190 ~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~------~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~ 252 (486)
T 3haj_A 190 LQDKIEKCKQDVLKTKEKYEKSLKELDQG------TPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQ 252 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555554444443322 1245556666655554 46666666666654
No 159
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.48 E-value=84 Score=32.41 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=22.1
Q ss_pred HHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 240 AKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 240 ~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.|...|..++..++..+...++++..|++.|+.....|.....
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555444444444
No 160
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.41 E-value=1.8e+02 Score=31.57 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh---hhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQD---AVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d---~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.|..+-+.++..++.|+++...++.++..+.. ....+..+.++|+.++.++..++..++.
T Consensus 37 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888866542 2344556666777777766666666665
No 161
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.00 E-value=2.4e+02 Score=23.04 Aligned_cols=10 Identities=30% Similarity=0.404 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q psy8072 504 INREMRHLIT 513 (584)
Q Consensus 504 i~~Emr~Lis 513 (584)
..+|+..|.+
T Consensus 52 q~~EYq~Lln 61 (84)
T 1gk4_A 52 HLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555544
No 162
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=26.91 E-value=1.6e+02 Score=21.93 Aligned_cols=39 Identities=26% Similarity=0.258 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhc
Q psy8072 510 HLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISER 548 (584)
Q Consensus 510 ~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~ 548 (584)
.++.+.|..|.+|---++-=|.|.|+|+.-|-.||.+-+
T Consensus 3 t~LK~~Q~NNr~LalALe~Ek~Kvr~Aq~~ILqLkrE~q 41 (47)
T 3fga_D 3 TLLKNYQDNNKMLVLALENEKSKVKEAQDIILQLRKECY 41 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888887777778899999999999998743
No 163
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.88 E-value=2.7e+02 Score=23.99 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=7.5
Q ss_pred HHHHHhhhhhhhchHHHHHH
Q psy8072 247 LKISELQDAVNGKETEAAEL 266 (584)
Q Consensus 247 ~e~~~l~d~~~~~ese~~eL 266 (584)
.++++|.+++.++.++.+.|
T Consensus 65 ~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 164
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=26.72 E-value=1.2e+02 Score=24.19 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q psy8072 39 DIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQT 76 (584)
Q Consensus 39 D~~vLqfQn~kL~Q~LE~qr~~~~~LE~rieeLe~rQ~ 76 (584)
|.+|-.+.+..+.+.-.|--...+.|..||+.+++|-.
T Consensus 14 D~~v~n~t~~~l~~AN~YTD~KF~qL~nKi~k~~kr~~ 51 (64)
T 3lt7_A 14 DVTVSNSTKKAIRESNQYTDHKFHQLENRLDKLEKRLL 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 67788888999999999998889999999999988753
No 165
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=26.49 E-value=2.3e+02 Score=22.11 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 484 YEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 484 re~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
++.|.+++++.+. .|..+++++...+..+..++..|.+..+..+.-|..|..+
T Consensus 4 ~~~~~~~le~kl~----------~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~k 56 (65)
T 3m0d_C 4 KEKLLAELEGKLR----------VFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQR 56 (65)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455666655554 3777777777788888888888877766666666666553
No 166
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.41 E-value=50 Score=23.38 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy8072 512 ITSLQNHNKQIKGEVNRYKRKY 533 (584)
Q Consensus 512 isSlq~~i~~LksEv~R~K~k~ 533 (584)
+.-|-.++.-|+.||.|+|..+
T Consensus 10 VEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 10 VEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 4445555666666666665443
No 167
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=26.40 E-value=3e+02 Score=23.43 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 466 LRGEMMQLEDALSQIRKEYEMLRIEFET 493 (584)
Q Consensus 466 l~s~v~qlE~~LarvR~ere~L~~E~eq 493 (584)
|+.++.--..|+..=|.+|+.+.-+.++
T Consensus 45 Lk~Qv~IY~~DF~aERadREkl~~eKe~ 72 (94)
T 3jsv_C 45 LKAQADIYKADFQAERHAREKLVEKKEY 72 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555556666666666655554333
No 168
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.37 E-value=2.1e+02 Score=23.44 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=15.1
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLE 293 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ 293 (584)
..++++.++|=.+++..+. |...|+.+|+..+..
T Consensus 17 d~LQTrfARLLaEy~ssQ~---KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 17 DLLQTRFARILAEYESMQQ---KLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcc
Confidence 3333444444333344432 233455566655544
No 169
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=26.24 E-value=32 Score=27.93 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=13.9
Q ss_pred hccCChhhhhcChhHHHHHHHHHHH
Q psy8072 399 IRQLPESVIVETTEYKCLQSAYSVL 423 (584)
Q Consensus 399 L~~l~ee~I~~S~~Yk~LqsQ~s~l 423 (584)
...++||.|.=.-+--.|++.+..+
T Consensus 48 ~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 48 TERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 5566666665555555666655555
No 170
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.86 E-value=4e+02 Score=28.04 Aligned_cols=61 Identities=8% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISE-LQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~-l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
-.|..+-+.++..++.|+++...++.++.. -......+..+.+.|+.++.++..++..++.
T Consensus 31 ~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 31 LALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888999999999999999998864 1112233444555555555555555544444
No 171
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=25.79 E-value=5.8e+02 Score=26.51 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8072 413 YKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIE 453 (584)
Q Consensus 413 Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie 453 (584)
++-+..||....++..++-.+......++|.-|++.....+
T Consensus 128 l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~ 168 (373)
T 3hhm_B 128 LHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNE 168 (373)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 33345555555555555555555555555555555555543
No 172
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.77 E-value=77 Score=20.51 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy8072 264 AELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 264 ~eL~~qLee~~~eL~k~~r 282 (584)
.+|-.+||+++..|.+.++
T Consensus 4 delykeledlqerlrklrk 22 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677789999999999988
No 173
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.71 E-value=2.8e+02 Score=22.85 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 415 CLQSAYSVLYNENQLAKTQAQEFQSHLSASKN 446 (584)
Q Consensus 415 ~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~ 446 (584)
-|+.|+..+..+..++-.+++..+....-.|.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~ 35 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 35 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766666666666665555555554
No 174
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=24.89 E-value=2.9e+02 Score=22.75 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8072 219 EANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRN 284 (584)
Q Consensus 219 ~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~ 284 (584)
..+..|..|..+++..+..+..|+-.= .......++++.-|+.-+|++..--...+.++
T Consensus 14 ~e~~~l~~e~dn~~~~~edfk~KyE~E-------~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kv 72 (86)
T 3swk_A 14 NDKARVEVERDNLAEDIMRLREKLQEE-------MLQREEAENTLQSFRQDVDNASLARLDLERKV 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345556666666666666666555432 23336666777777777777665555555533
No 175
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.55 E-value=3.2e+02 Score=23.95 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8072 421 SVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKK--LRGEMMQLEDALSQIRKEYEMLRIEFETNLAAN 498 (584)
Q Consensus 421 s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~--l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~ 498 (584)
..|..++...-.||-.++.+|...-.++.. .-+|+..+.- =+..|..+++.|++++..--+...--.+..++.
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~-----DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~~~k~~ 99 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKVRDAEKQYEK-----DPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKNLGKEQ 99 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 456677777788888888887655543322 3466654222 344566777777777766655555555554544
Q ss_pred ccCC
Q psy8072 499 EQTG 502 (584)
Q Consensus 499 Eq~g 502 (584)
+.+|
T Consensus 100 DPTG 103 (113)
T 4fi5_A 100 DPTG 103 (113)
T ss_dssp ----
T ss_pred CCCC
Confidence 5555
No 176
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.21 E-value=3.1e+02 Score=22.88 Aligned_cols=95 Identities=12% Similarity=0.179 Sum_probs=51.6
Q ss_pred ChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-H-HHH-------hHHHH----HH-HHHHHH
Q psy8072 403 PESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQ-I-EMM-------ETEEL----MV-QKKLRG 468 (584)
Q Consensus 403 ~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~q-i-e~m-------E~~E~----~~-q~~l~s 468 (584)
|.++-.-...|..++.++..+...+..+..++.+...-+.....---.. + ..+ .-+++ .. ...++.
T Consensus 5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~ 84 (117)
T 2zqm_A 5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEV 84 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHH
Confidence 3344344457777788888877777777666665544422111100000 0 000 11111 11 222777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEFETNLAA 497 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~eq~~aa 497 (584)
.|..++..+..+..+.+.+...+.+..+.
T Consensus 85 ~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 85 RLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77777777777777777777777776653
No 177
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.21 E-value=76 Score=31.66 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8072 505 NREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVR 544 (584)
Q Consensus 505 ~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr 544 (584)
+++++.-+.+|..+|.-|+.+++++|+++.....|+.+|+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555666666666666666666555555555555554
No 178
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=24.05 E-value=2.5e+02 Score=21.68 Aligned_cols=57 Identities=14% Similarity=0.297 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
..++.+|+.-+..|+.-++.|+.=.......+...+.-+.....-++....+|.++.
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345788888888899988888888877777777777777777777777777766654
No 179
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.00 E-value=1e+02 Score=34.14 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q psy8072 426 ENQLAKTQAQEFQSHLSASKNNQ 448 (584)
Q Consensus 426 e~~~lk~qL~e~r~~Lq~~R~~~ 448 (584)
++.++|++..+.+..-+.+|..+
T Consensus 301 e~qqm~~~a~e~~~~~~~e~~~l 323 (575)
T 2i1j_A 301 DVQQMKAQAREEKLAKQAQREKL 323 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888777666543
No 180
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.92 E-value=3.2e+02 Score=22.85 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 510 HLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 510 ~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
.++.....++..+..++..++.+..+...++..|+..
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555555555443
No 181
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.87 E-value=1.7e+02 Score=31.00 Aligned_cols=60 Identities=25% Similarity=0.429 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh---hhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 223 EIQTENRNLTEQNTKLHAKYHSISLKISELQ---DAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 223 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~---d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.|..+-+.++..++.|+++...++.++..+. .....+..+.+.|+.++.++..++..++.
T Consensus 34 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2dq3_A 34 ELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEE 96 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678889999999999999999987653 23456678888888888888888877777
No 182
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.83 E-value=1.2e+02 Score=24.41 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=17.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+.+|+..+.++...... +..+|..|..++..|..+
T Consensus 31 i~~LE~~v~~le~~~~~-------l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 31 LKALETQVVTLKELHSS-------TTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 45666665555544333 344444555555555444
No 183
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=23.68 E-value=3.8e+02 Score=23.68 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=23.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 499 EQTGPINREMRHLITSLQNHNKQIKGEVNRY 529 (584)
Q Consensus 499 Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~ 529 (584)
........+|..|++.+++--..|+.++.+-
T Consensus 64 ~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~q 94 (119)
T 3etw_A 64 ANTRFYKSQYQELASKYEDALKKLEAEMEQQ 94 (119)
T ss_dssp TTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888888777777777777665
No 184
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.63 E-value=4.1e+02 Score=25.54 Aligned_cols=24 Identities=0% Similarity=0.194 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 503 PINREMRHLITSLQNHNKQIKGEV 526 (584)
Q Consensus 503 ~i~~Emr~LisSlq~~i~~LksEv 526 (584)
....-|-.|+++....|..|+..|
T Consensus 175 ~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 175 DLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455567889999999999888665
No 185
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.59 E-value=99 Score=24.84 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.2
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q psy8072 251 ELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289 (584)
Q Consensus 251 ~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~ 289 (584)
.+...+......+.+|+-.|++...++...++.++|+..
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555677788888888899999999998887777776
No 186
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.40 E-value=6.4e+02 Score=26.18 Aligned_cols=108 Identities=18% Similarity=0.232 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH---------------HHHHHHHHHHH
Q psy8072 410 TTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQ---------------KKLRGEMMQLE 474 (584)
Q Consensus 410 S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q---------------~~l~s~v~qlE 474 (584)
-..|+-...++..+|.+.+....+++--+.-+.+...+..-.++++..-|-... ..+..-...|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~ 211 (373)
T 3hhm_B 132 NTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLK 211 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHH
Confidence 377777888888888888888888877777777777776666655533332110 00111122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHH
Q psy8072 475 DALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKG 524 (584)
Q Consensus 475 ~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~Lks 524 (584)
.-|..++..+..|..++....+. ++|+-.-++++.=.+.+|.-
T Consensus 212 ~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 212 SRISEIIDSRRRLEEDLKKQAAE-------YREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhccChHHHHHHH
Confidence 44444555555555555554443 45555555666655544443
No 187
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.40 E-value=3.1e+02 Score=22.55 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHH
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQ 274 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~ 274 (584)
.+.+..-|.++..|.--+-+|-.--+.+.+.++.++.+..+|...++-+.
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444433
No 188
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.39 E-value=4.6e+02 Score=24.48 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 479 QIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYK 530 (584)
Q Consensus 479 rvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K 530 (584)
.+|.+.-..+.++.....+ ..|-...++.| .++|..|++++...|
T Consensus 89 ~Lr~ql~akr~EL~aL~~a---~~~DeakI~aL----~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 89 ALRQQLISKRYEYNALLTA---SSPDTAKINAV----AKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTS---SSCCHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCCHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444455555566555554 33444444444 456666666665443
No 189
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.12 E-value=1.2e+02 Score=26.98 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 423 LYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYE 485 (584)
Q Consensus 423 l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere 485 (584)
+-+|+.+|+..||.++..+.+... ..+.........++..|...+++++..+.
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~----------rgd~~~i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSL----------VEAADKYAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCT----------TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 190
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=23.11 E-value=2.7e+02 Score=21.77 Aligned_cols=58 Identities=10% Similarity=0.226 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 225 ~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..++.+|..-+..|+.-++.|+.=+......++..+.-+.....-++....+|.++.+
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 62 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAY 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999888888888888888888888888888888877765
No 191
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=22.95 E-value=4.5e+02 Score=24.20 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=51.3
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhccCChhhhh
Q psy8072 329 LDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIV 408 (584)
Q Consensus 329 ~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ee~I~ 408 (584)
|...-.+-.++.++...-+.-+.........+.+.++.++.+ |..+..+.
T Consensus 50 Fqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~k----------------------------L~~L~P~~-- 99 (158)
T 3tul_A 50 FQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNK----------------------------LQSLDPAD-- 99 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HTTC------
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH----------------------------HhcCCCCC--
Confidence 454555556677777777788889999999999999999999 77776655
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVLYNENQLAKTQAQ 435 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l~~e~~~lk~qL~ 435 (584)
|.|..++.-...+.++...++.-++
T Consensus 100 --P~Yak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 100 --PGYAQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888555555544443
No 192
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=22.56 E-value=2.7e+02 Score=21.57 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~ 281 (584)
-..++.++..-+..|+.-++.|+.=.......+...+.-+.....-++....+|.++.
T Consensus 10 R~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 10 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566888899999999999999988877777777777777777777777777777764
No 193
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.97 E-value=78 Score=31.61 Aligned_cols=26 Identities=8% Similarity=0.233 Sum_probs=12.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 257 NGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 257 ~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..+.+++..|...|.++..++.+.+.
T Consensus 64 ~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 64 DSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555
No 194
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=21.72 E-value=3.9e+02 Score=23.08 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072 501 TGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS 549 (584)
Q Consensus 501 ~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s 549 (584)
.+-...+++.++.-|.++|..|++|---+-.+.+.---||.-|+.++.-
T Consensus 40 d~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 40 DHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88 (106)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 3445678999999999999999999888877778888899999998765
No 195
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.66 E-value=2.6e+02 Score=21.04 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8072 457 TEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLA 496 (584)
Q Consensus 457 ~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~a 496 (584)
.+|.+. +++..+|.+||++|..-...|-.+.-++.+...
T Consensus 9 fAERsV-~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~ 47 (52)
T 2z5i_A 9 HLENEV-ARLKKLVDDLEDELYAQKLKYKAISEELDHALN 47 (52)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334433 338889999999999888888888888887664
No 196
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.50 E-value=7.8e+02 Score=26.49 Aligned_cols=31 Identities=6% Similarity=-0.236 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVLYNENQLAKTQAQEFQSHL 441 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~L 441 (584)
..|+..+.|....++-+++...+|++....+
T Consensus 128 ~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 128 NKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 3455666666666555555566665544443
No 197
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=21.32 E-value=5.6e+02 Score=24.70 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVLYNE 426 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l~~e 426 (584)
+.+..++.++.-++..
T Consensus 220 p~~e~~~~~l~~~~e~ 235 (243)
T 2a01_A 220 PVLESFKVSFLSALEE 235 (243)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665433
No 198
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.08 E-value=3.5e+02 Score=22.30 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=28.2
Q ss_pred CCCchHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHH
Q psy8072 209 PIPSLDEAVREAN----IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYEL 277 (584)
Q Consensus 209 ~~~d~~~~l~~~n----~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL 277 (584)
|+...++.|.... .+...||.+|...+. ..+..+..++.++..|..-++.+++=.
T Consensus 13 Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie--------------~~~eEi~~LkeEN~~L~el~~~~~~la 71 (79)
T 2zxx_A 13 PSSQYWKEVAEQRRKALYEALKENEKLHKEIE--------------QKDSEIARLRKENKDLAEVAEHVQYMA 71 (79)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777776663322 333444444444444 444444555556555555555554433
No 199
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.93 E-value=3.9e+02 Score=26.58 Aligned_cols=15 Identities=0% Similarity=-0.028 Sum_probs=6.6
Q ss_pred cChhHHHHHHHHHHH
Q psy8072 409 ETTEYKCLQSAYSVL 423 (584)
Q Consensus 409 ~S~~Yk~LqsQ~s~l 423 (584)
+-..|...+.++...
T Consensus 113 s~~~~~~a~~~~~~a 127 (369)
T 4dk0_A 113 SLDTLNTAKATLNNA 127 (369)
T ss_dssp CGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 334444444444444
No 200
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.79 E-value=1.2e+02 Score=21.15 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 470 MMQLEDALSQIRKEYEMLRIEFE 492 (584)
Q Consensus 470 v~qlE~~LarvR~ere~L~~E~e 492 (584)
|.|||+..-.+..+.++|+.|.+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 44455544444444444444443
No 201
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.77 E-value=1.4e+02 Score=23.40 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 504 INREMRHLITSLQNHNKQIKGEVNRYKR 531 (584)
Q Consensus 504 i~~Emr~LisSlq~~i~~LksEv~R~K~ 531 (584)
.+.++..=+..|..+|..|.+++.++|.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666666666666643
No 202
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.69 E-value=2e+02 Score=25.02 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhh--hhhccccCCCCC--CCCCCCCCCCcc
Q psy8072 248 KISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVK--LCQQMHTEDGKE--KDVIKPEETMSN 323 (584)
Q Consensus 248 e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~--s~~~~~~~~~~~--~~~~~p~~g~~~ 323 (584)
+++.+.......+.++..|..++..+...+.+..+ =++. ++.++ .+..+.-+-+.+ .++..+.....-
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~---~~e~-----l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~ 73 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEI---LEKT-----LSDIQGKDGSETLVPVGAGSFIKAELKDTSEVI 73 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----HHHHTTCTTCEEEEEEETTEEEEEECCSTTEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----HHhcccCCCCeEEEEcCCCcEEEEEECCCCEEE
Q ss_pred ccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 324 VSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEK 366 (584)
Q Consensus 324 ~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~ 366 (584)
++..--=-++..++++.++...|+..|++..+....-...+..
T Consensus 74 v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~ 116 (133)
T 1fxk_C 74 MSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITD 116 (133)
T ss_dssp EEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 203
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=20.66 E-value=3.2e+02 Score=21.66 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 224 L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
-..++.+|..-+..|+.-++.|+.=.......++..+.-+.....-++....+|.++.+
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999988888887888888887777777777777777764
No 204
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.63 E-value=2.7e+02 Score=23.53 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=25.5
Q ss_pred HhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 244 SISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 244 ~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
.+..++..++..+..+++++.+++.+++.-..+|.....
T Consensus 34 ~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 72 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLD 72 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777776666555554443
No 205
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=20.40 E-value=3.5e+02 Score=21.98 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 412 EYKCLQSAYSVLYNENQLAKTQAQEFQSHLSA 443 (584)
Q Consensus 412 ~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~ 443 (584)
....++.++..+..+...|+....+-+..|+.
T Consensus 79 ~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~ 110 (118)
T 3uul_A 79 EEFEIQEQMTLLNARWEALRVESMERQSRLHD 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888888877777777777665555543
No 206
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.28 E-value=2.5e+02 Score=20.87 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHH
Q psy8072 251 ELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEA 294 (584)
Q Consensus 251 ~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~a 294 (584)
.+.+++.++++-+.-|+..+..+-+++..+.. ||-+++...
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~---KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQM---KMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
No 207
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.21 E-value=4.2e+02 Score=23.94 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8072 507 EMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546 (584)
Q Consensus 507 Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~ 546 (584)
|-..||+.-...-..++-.+..++..++|+..-|..+..+
T Consensus 86 EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~Q 125 (135)
T 2e7s_A 86 EANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQ 125 (135)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333444444555555556655544444433
Done!