Query psy8072
Match_columns 584
No_of_seqs 123 out of 147
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 17:41:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8072.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8072hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 65.5 30 0.0022 27.5 11.9 61 222-282 31-92 (110)
2 d2elba1 a.238.1.1 (A:6-273) DC 60.5 58 0.0042 29.1 24.7 44 327-370 12-55 (268)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 49.4 38 0.0028 26.8 8.8 82 411-493 8-104 (107)
4 d1ez3a_ a.47.2.1 (A:) Syntaxin 47.0 66 0.0048 25.7 14.5 112 421-535 6-122 (124)
5 d1seta1 a.2.7.1 (A:1-110) Sery 43.4 71 0.0052 25.1 10.7 35 514-548 68-102 (110)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 43.0 72 0.0052 25.0 10.5 43 506-548 61-103 (107)
7 d1ivsa1 a.2.7.3 (A:797-862) Va 36.0 43 0.0032 24.2 6.4 23 348-370 4-26 (66)
8 d2ap3a1 a.24.27.1 (A:12-196) H 32.1 1.1E+02 0.0078 23.8 21.4 72 469-540 110-181 (185)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 31.2 1.2E+02 0.0088 24.2 9.5 18 335-352 85-102 (133)
10 d1ivsa1 a.2.7.3 (A:797-862) Va 26.1 1.1E+02 0.0078 21.9 7.6 62 467-528 3-64 (66)
11 d1lrza1 a.2.7.4 (A:245-309) Me 24.3 1.1E+02 0.0082 22.3 6.9 21 350-370 5-25 (65)
12 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 22.1 1.9E+02 0.014 23.5 15.0 61 222-282 45-105 (196)
13 d1fxkc_ a.2.5.1 (C:) Prefoldin 21.4 87 0.0063 25.1 6.4 40 506-545 4-46 (133)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=65.54 E-value=30 Score=27.52 Aligned_cols=61 Identities=8% Similarity=0.223 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-hhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQ-DAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~-d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
-.|..+.+.++..++.|+++...++.++.... +.......+.+.|..++.++..++..+..
T Consensus 31 ~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~ 92 (110)
T d1seta1 31 LALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEA 92 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999996432 22233445555555555555555555554
No 2
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.50 E-value=58 Score=29.11 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=30.3
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 327 KKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 327 ~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
+.|...-..+|........++..|-+.-.......+++..-+..
T Consensus 12 P~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~ 55 (268)
T d2elba1 12 PQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHL 55 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666667777777777777777777776666666665555
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=49.45 E-value=38 Score=26.83 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHhHHHHHHHHH-HHHHHHHHHH
Q psy8072 411 TEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQ--------------RQIEMMETEELMVQKK-LRGEMMQLED 475 (584)
Q Consensus 411 ~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~--------------~qie~mE~~E~~~q~~-l~s~v~qlE~ 475 (584)
..|..|+.++..+.....++.+++.+...-+......-- +-.+++. .++..+.+ ++.++..++.
T Consensus 8 ~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~-~~l~~~~e~l~~~i~~l~~ 86 (107)
T d1fxka_ 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELT-EELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 468888888888877777777777766655443332100 0000011 12222222 7777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8072 476 ALSQIRKEYEMLRIEFET 493 (584)
Q Consensus 476 ~LarvR~ere~L~~E~eq 493 (584)
.+..+..+++.++.++..
T Consensus 87 q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 87 QEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777776654
No 4
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=46.96 E-value=66 Score=25.71 Aligned_cols=112 Identities=7% Similarity=0.148 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8072 421 SVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQ 500 (584)
Q Consensus 421 s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq 500 (584)
...++++..++..++..+..+...++.|.+-+-.+-. +-.....|..-+.+.-.....|+..-+.|....++... ..
T Consensus 6 ~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~-~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~--~~ 82 (124)
T d1ez3a_ 6 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP-DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG--LN 82 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cC
Confidence 4456666777777777777777777665443321111 11123335555555555666666666666655554222 12
Q ss_pred CC-ch----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8072 501 TG-PI----NREMRHLITSLQNHNKQIKGEVNRYKRKYKE 535 (584)
Q Consensus 501 ~g-~i----~~Emr~LisSlq~~i~~LksEv~R~K~k~ke 535 (584)
+| +. ....-.|...|.+-|...+..=..||.+||+
T Consensus 83 ~~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k~ 122 (124)
T d1ez3a_ 83 RSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 122 (124)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 22 2244466666777777777666677666654
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=43.38 E-value=71 Score=25.09 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhc
Q psy8072 514 SLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISER 548 (584)
Q Consensus 514 Slq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~ 548 (584)
.+..++..|+.++..+..+++++..++..+-....
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iP 102 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREKEARLEALLLQVP 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45566667777777777777777888777754443
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.99 E-value=72 Score=25.05 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhc
Q psy8072 506 REMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISER 548 (584)
Q Consensus 506 ~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~ 548 (584)
.....++..+.+++..|++++.++....++...++..++....
T Consensus 61 ~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 61 VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777777777776544
No 7
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=36.02 E-value=43 Score=24.23 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy8072 348 QELDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 348 ~ELe~L~~e~~~l~~e~~~Lk~~ 370 (584)
.|+.+|..+...+.+++..++..
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~k 26 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999988
No 8
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=32.10 E-value=1.1e+02 Score=23.85 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy8072 469 EMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEI 540 (584)
Q Consensus 469 ~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~ 540 (584)
.+..+...+..+...+..+.-........-......+.+++..+..+...+..|+..+..+....++...+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek 181 (185)
T d2ap3a1 110 VLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEK 181 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444443333332234466778888888888888888888888866655555443
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=31.16 E-value=1.2e+02 Score=24.17 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8072 335 DLEEAKELANNRLQELDK 352 (584)
Q Consensus 335 eleE~k~LA~~Rl~ELe~ 352 (584)
.++++.....+|+.+|++
T Consensus 85 ~~~eA~~~l~~ri~~l~~ 102 (133)
T d1fxkc_ 85 NFEDAMESIKSQKNELES 102 (133)
T ss_dssp EHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 445666666666644443
No 10
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.06 E-value=1.1e+02 Score=21.91 Aligned_cols=62 Identities=6% Similarity=0.013 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072 467 RGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNR 528 (584)
Q Consensus 467 ~s~v~qlE~~LarvR~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R 528 (584)
+.++..|+..+.++.++.+.+...+.--.=-.--+..++.+-+.-+..++..+..|+..+.+
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666554211000014578888888888888888777777654
No 11
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=24.28 E-value=1.1e+02 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy8072 350 LDKLHLQHREALKDVEKLKMD 370 (584)
Q Consensus 350 Le~L~~e~~~l~~e~~~Lk~~ 370 (584)
|..|+.+...|.+++..+..+
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~ 25 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKD 25 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888
No 12
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.10 E-value=1.9e+02 Score=23.48 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q psy8072 222 IEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQS 282 (584)
Q Consensus 222 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~r 282 (584)
..+..++..+...+..+..+.+.....+..-.........-+..|...+-++..++..+..
T Consensus 45 ~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~ 105 (196)
T d1fioa_ 45 SHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDS 105 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666555443333333344455555555555555555544
No 13
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.40 E-value=87 Score=25.14 Aligned_cols=40 Identities=8% Similarity=0.117 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHhhh
Q psy8072 506 REMRHLITSLQNHNKQIKGEVNRYKRKY---KETSAEIQKVRI 545 (584)
Q Consensus 506 ~Emr~LisSlq~~i~~LksEv~R~K~k~---kea~~e~~~lr~ 545 (584)
.|+...+..++.++..|++++.++.... ..+..-+..|..
T Consensus 4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~ 46 (133)
T d1fxkc_ 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444445555555555555555553333 444445555544
Done!