RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8072
(584 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 92.2 bits (228), Expect = 2e-19
Identities = 86/651 (13%), Positives = 181/651 (27%), Gaps = 202/651 (31%)
Query: 3 KRGVDCEDASSSGQPPVKKVQFEPIRIGPISTLEEMD--IKVLKFQNKKLAQR-IEQKNQ 59
DC+D + + K + + I + + L + +++ Q+ +E+ +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 60 VEHE-LRSRIEQLEKRQTQDDAVLNV--VNRYWN-------------QLNEDIRILLQRF 103
+ ++ L S I + E+RQ + + +R +N Q +R L
Sbjct: 89 INYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE- 146
Query: 104 DAETADESES-----------KS---QAALRALDV-CAPP------AYGNTNV------- 135
K+ + V C N N
Sbjct: 147 -----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 136 ---MCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAV-----------AKII 181
+ I D N + S + +L R+ SK AK
Sbjct: 202 LQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 182 QAFD---R-LV-QRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNT 236
AF+ + L+ R +++T L +I + + LT
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAA----------------TTTHISLDHHSMTLTPDEV 303
Query: 237 K-LHAKYHSISLKISEL-QDAVNGKETE----AAELRNQIDDLQYELSKVQSRNDKLENH 290
K L KY + + +L ++ + A +R+ + DKL
Sbjct: 304 KSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKL--- 355
Query: 291 LLEATEKVKLC-QQMHTEDGKE---------KDVIKPEETMSNV-SQKKLDDLQKDLEEA 339
T ++ + + ++ P +S + D+ + +
Sbjct: 356 ----TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK- 410
Query: 340 KELANNRLQELDK------LHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTT 393
L L E + + E +E
Sbjct: 411 --LHKYSLVEKQPKESTISIPSIYLELKVKLENEY------------------------- 443
Query: 394 QLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQE-FQSHLS--ASKNNQQR 450
L R I V+ Y ++ ++ + L + F SH+
Sbjct: 444 ALHRSI--------VD--HYNIPKT-----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 451 QIEMMETEEL---MVQKKLR------GEMMQLEDALSQIRK----------EYEMLRIEF 491
++ + L +++K+R + + L Q++ +YE L
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 492 ETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQK 542
L E+ ++ L +L ++ I ++E ++Q+
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAI----------FEEAHKQVQR 589
Score = 76.0 bits (186), Expect = 2e-14
Identities = 72/456 (15%), Positives = 142/456 (31%), Gaps = 111/456 (24%)
Query: 159 KEELDE--KLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEA 216
KEE+D + V + R F L+ + E++ E+ N L
Sbjct: 48 KEEIDHIIMSKDAVSGTLRL-------FWTLLSKQEEMVQKFVEEVLRIN---YKFLMSP 97
Query: 217 VREANIEIQTENRNLTEQNTKLH------AKYH--------SISLKISELQDAVN----- 257
++ + R EQ +L+ AKY+ + + EL+ A N
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 258 ----GKETEAAE-LRNQIDDLQYELSK----VQSRNDKLENHLLEATEKVKLCQQMHTED 308
GK A + + +Q ++ + +N +LE +K L Q+
Sbjct: 158 VLGSGKTWVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQI---- 209
Query: 309 GKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREAL---KDVE 365
+ + + SN+ + + L+ L K + L +V+
Sbjct: 210 --DPNWTSRSDHSSNIKL--------RIHSIQA----ELRRLLKSK-PYENCLLVLLNVQ 254
Query: 366 KLKMDWEV--TFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIV-------ETTEY--K 414
+ + FN L+ + +T L E K
Sbjct: 255 ----NAKAWNAFNLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 415 CLQSAYSVLYNE----NQLAKTQ-AQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGE 469
L L E N + A+ + L+ N + + + T +++ L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT---IIESSLN-- 364
Query: 470 MMQLEDALSQIRKEYEMLRIEFETNLAANEQT------GPINREMRHLITSLQNHNKQIK 523
LE A RK ++ L + F + I ++ ++ L H +
Sbjct: 365 --VLEPAE--YRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--HKYSL- 416
Query: 524 GEVNRYKRKYKETSAEIQKVRISERSPWPSGYRLHA 559
+++ KE++ I + + + + Y LH
Sbjct: 417 -----VEKQPKESTISIPSIYLELKVKLENEYALHR 447
Score = 48.3 bits (114), Expect = 7e-06
Identities = 34/213 (15%), Positives = 70/213 (32%), Gaps = 71/213 (33%)
Query: 273 LQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDL 332
+ +E + Q + + + +A C+ +D K ++ EE +D +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCK--DVQD-MPKSILSKEE---------IDHI 54
Query: 333 QKDLEEAKELANNRLQELDKLHLQHREALKD--VEKLKMDWEVTFNNEISWLVWSVNPTS 390
+ RL L + E ++ E L+++++ +L+
Sbjct: 55 IM--SKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYK--------FLM------- 95
Query: 391 LTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQR 450
+ + + RQ P + T Y LYN+NQ+ F +K N R
Sbjct: 96 --SPIKTEQRQ-PS---MMTRMY---IEQRDRLYNDNQV-------F------AKYNVSR 133
Query: 451 QIEMMETEELMVQKKLRGEMMQLEDALSQIRKE 483
+ ++L AL ++R
Sbjct: 134 -------LQP---------YLKLRQALLELRPA 150
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 75.3 bits (185), Expect = 3e-14
Identities = 49/354 (13%), Positives = 130/354 (36%), Gaps = 40/354 (11%)
Query: 159 KEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVR 218
K+E ++ R Q ++ + ++ Q +L + + L+ E
Sbjct: 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY---------AEAE 912
Query: 219 EANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELS 278
E + + + + L E ++ A+ + +LQ + + +L Q+++ +
Sbjct: 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972
Query: 279 KVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEE 338
K+Q + + + + + + + + + KE+ +++ + + + ++ K+L +
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 339 AKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQ 398
K + + EL+ + ++ +++EK+K E +
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLE------------------------GE 1068
Query: 399 IRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETE 458
L E + + L++ + E Q A + ++ + KNN ++I +E+
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET----SQKNNALKKIRELESH 1124
Query: 459 ELMVQKKL---RGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMR 509
+Q+ L + + E + +E E L+ E E L +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDY 1178
Score = 54.5 bits (131), Expect = 9e-08
Identities = 44/328 (13%), Positives = 124/328 (37%), Gaps = 34/328 (10%)
Query: 225 QTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQI-------DDLQYEL 277
+ E + E+ + + ++ EL+ E L+ ++ + +
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 278 SKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLE 337
++ ++ +LE L E +++ ++ + EK K ++ M ++ +++L++ + +
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK--KMQQQMLDL-EEQLEEEEAARQ 972
Query: 338 EAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPR 397
+ + ++ K+ KL T L
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKL---------------------TKERKLLEE 1011
Query: 398 QIRQLPESVIVETTEYKCLQSAYSVLYNE-NQLAKTQAQEFQSHLSASKNNQQRQIEMME 456
++ L ++ E + K L + + ++L +E +S K ++ + E +
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
Query: 457 TEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQ 516
E + + L+ ++ +L+ L++ +E + E + RE+ I+ LQ
Sbjct: 1072 LHEQIAE--LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 517 NHNKQIKGEVNRYKRKYKETSAEIQKVR 544
+ K N+ +++ ++ S E++ ++
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALK 1157
Score = 51.4 bits (123), Expect = 8e-07
Identities = 47/324 (14%), Positives = 118/324 (36%), Gaps = 80/324 (24%)
Query: 36 EEMDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNED 95
EE + L+ + KK+ Q++ +L ++E+ E + + + ++ +D
Sbjct: 939 EEERSQQLQAEKKKMQQQML-------DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Query: 96 IRILLQRFDAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLS 155
I I+ ++ +K + L+ + T+
Sbjct: 992 ILIM---------EDQNNKLTKERKLLE------------------ERVSDLTT------ 1018
Query: 156 TWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDE 215
+ E +EK + +L ++E + L+ L +
Sbjct: 1019 --NLAEEEEK---------------AKNLTKLKNKHESMISELEVRL------------K 1049
Query: 216 AVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQY 275
++ E++ R L +++ LH + + +I+EL+ + KE E +++D
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109
Query: 276 ELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKD 335
+ + + +LE+H+ + E ++ + + K+K + ++L+ L+ +
Sbjct: 1110 QKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL----------SEELEALKTE 1159
Query: 336 LEEAKELANNRLQELDKLHLQHRE 359
LE+ + QEL + +
Sbjct: 1160 LEDTLD-TTATQQELRGSDYKDDD 1182
Score = 47.9 bits (114), Expect = 9e-06
Identities = 51/333 (15%), Positives = 116/333 (34%), Gaps = 25/333 (7%)
Query: 48 KKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRFDAET 107
+ + +++ + + + + +++LE++ TQ N++ E +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 108 AD--ESESKSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELDEK 165
A E E ++ + E + ++ L EE +
Sbjct: 920 AKKQELEEILHEMEARIE--------EEEERSQQLQAEKKKMQQQMLDL-EEQLEEEEAA 970
Query: 166 LANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKG--ELNNSNGDPIPSLDEAVREANIE 223
A KI + D ++ ++ + K L D +L E +A
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK-N 1029
Query: 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEA-------AELRNQIDDLQYE 276
+ ++L + EL+ E E+ AEL+ QI +L+ +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089
Query: 277 LSK----VQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDL 332
L+K +Q+ +LE+ + +K +++ + ++ ++ E+ N ++K+ DL
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
Query: 333 QKDLEEAKELANNRLQELDKLHLQHREALKDVE 365
++LE K + L KD +
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 2e-08
Identities = 62/382 (16%), Positives = 113/382 (29%), Gaps = 130/382 (34%)
Query: 86 NRYWNQLNE-------DIRILLQRFDA---ETADESESKSQAALRALDVCA----PPAYG 131
+ Y+ +L + + L++ E + + + L++ P
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 132 NTNVMCLAITDENEATTSF----LMQLST---------WDKEELDEKLANRVQVSKRAV- 177
+ + + S ++QL+ + EL L S+ V
Sbjct: 227 DKDYLL-------SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 178 AKII------QAFDRLVQRNEKITM--------------------ILKGELNNSNGDPIP 211
A I ++F V++ IT+ IL+ L N+ G P P
Sbjct: 280 AVAIAETDSWESFFVSVRK--AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 212 SLDEAVREANIEIQTENRNLTEQNTKLHAKYH-SISLKISELQDAVNGKETEAAELRNQI 270
L ++ E Q ++ + + N+ L A ISL VNG +N +
Sbjct: 338 ML--SISNLTQE-QVQDY-VNKTNSHLPAGKQVEISL--------VNGA-------KNLV 378
Query: 271 -----DDLQYELSKVQSRNDKLENHLLEATEKVKL---CQQMHTEDGKEKDVIK------ 316
L L L K K Q + K
Sbjct: 379 VSGPPQSLY-----------GLNLTL----RKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 317 --P--EETMSNVSQKKLDDLQKDLEE--AKELA--------NNRLQELDKLHLQHREALK 362
P + S DL K+ AK++ + L+ L E +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS---ERIV 480
Query: 363 D-VEKLKMDWEVTFNNEISWLV 383
D + +L + WE T + + ++
Sbjct: 481 DCIIRLPVKWETTTQFKATHIL 502
Score = 54.3 bits (130), Expect = 1e-07
Identities = 74/445 (16%), Positives = 137/445 (30%), Gaps = 141/445 (31%)
Query: 205 SNGD-----PIPSLD----EAVRE---ANIEIQTENRNLTEQNT---KLHAKYHSISLKI 249
S+G +P+ ++E + TE ++ T +L K+ +
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYVS 69
Query: 250 SELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDG 309
S ++ + G+ + L + + + + ND H L A L Q+ T
Sbjct: 70 SLVEPSKVGQFDQV--LNLCLTEFE---NCYLEGNDI---HALAAK----LLQENDTTLV 117
Query: 310 KEKDVIK--------PEETMSNVSQKKLDDLQKDLEEAKELA-------NNR--LQELDK 352
K K++IK + S L + E +L N +EL
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 353 LH-----------LQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTS------LT--- 392
L+ E L ++ + +D E F ++ L W NP++ L
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 393 --------TQL-------------PRQIRQL-------PESVIV-------ETTE--YKC 415
QL P ++R + ++ ++ E +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 416 LQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEE-LMVQKKLRGEMMQLE 474
++ A +VL+ + E + S + + +E E M+ + + E
Sbjct: 296 VRKAITVLF----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML--SISN--LTQE 347
Query: 475 DALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQ--IKGE------V 526
+ K TN P + + SL N K + G +
Sbjct: 348 QVQDYVNK----------TN-----SHLPAG---KQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 527 NRYKRKYKETSAEIQ-KVRISERSP 550
N RK K S Q ++ SER
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKL 414
Score = 43.1 bits (101), Expect = 2e-04
Identities = 80/563 (14%), Positives = 149/563 (26%), Gaps = 181/563 (32%)
Query: 33 STLEEMDIKVLKFQNKKLAQRIEQKNQVEHELRSR----IEQL--EKRQTQDDAVLNVVN 86
S L+E K+L + A E E L + + L + Q D VLN+
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAE--LVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 87 RYWNQ--L-NEDIRILLQRFDAETADESESKSQAALR----ALDVCAPPAYGNTNVMCLA 139
+ L DI L + E D + K++ ++ A + P +N
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQEN-DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 140 ITDENEATTSFLM---Q--LSTWDKEELDEKLANRVQVSKRAVAKII----QAFDRLVQR 190
E A + Q + +E L + Q V +I + L++
Sbjct: 148 AVGEGNAQL-VAIFGGQGNTDDY----FEE-LRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 191 NEKITMILKGELNN----SNGDPIPS---LDEA---------VREANIEIQTENRNLTEQ 234
+ LN N P L ++ A+ + + T
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 235 NTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEA 294
L + + L A A +++ S +
Sbjct: 262 E--LRSYLKGATGHSQGLVTA-------VA------------IAETDSWESFFVS----V 296
Query: 295 TEKVKL-------CQQMH----TEDGKEKDVIKPEET----MSNVSQKKLDDLQKDLEEA 339
+ + + C + + +D ++ E M ++S + +Q + +
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 340 KELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQI 399
N+ L ++ + +L + N LV S P SL
Sbjct: 357 ----NSHLPAGKQVEI----SLVN----------GAKN----LVVSGPPQSL-------- 386
Query: 400 RQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEE 459
Y + L K A Q +I
Sbjct: 387 --------------------YGL---NLTLRK---------AKAPSGLDQSRIPFS---- 410
Query: 460 LMVQKKLRGEMMQ------------LEDALSQIRKEYEMLRIEFE----------TNLAA 497
++KL+ + L A I K+ + F T +
Sbjct: 411 ---ERKLKFSN-RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 498 N--EQTGPINREMRHLITSLQNH 518
+ +G I+ + I L
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVK 489
Score = 42.7 bits (100), Expect = 4e-04
Identities = 36/263 (13%), Positives = 81/263 (30%), Gaps = 98/263 (37%)
Query: 96 IRILLQRFDAETADESESKSQAALRALDVCAPPA--YGNTNVMCLAITDENEATTS---F 150
IR ET + + K++ + ++ + + L+ T + T
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL--LSAT-QF---TQPALT 1737
Query: 151 LMQLSTWDKEELDEK-------------------LANRVQVSKRAVAKIIQAFD---RLV 188
LM+ + + E+L K LA ++A ++ + + +V
Sbjct: 1738 LMEKAAF--EDLKSKGLIPADATFAGHSLGEYAALA--------SLADVM-SIESLVEVV 1786
Query: 189 -QRNEKITMIL-KGELNNSNG-----DP---IPSLD-EAVREANIEIQTE--------NR 229
R + + + + EL SN +P S EA++ + N
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 230 NLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLEN 289
N+ Q Q G + A +D + L+ ++ + +
Sbjct: 1847 NVENQ------------------QYVAAG-DLRA------LDTVTNVLNFIKLQKIDI-- 1879
Query: 290 HLLEATEKVKLCQQMHTEDGKEK 312
++L + + E+ +
Sbjct: 1880 --------IELQKSLSLEEVEGH 1894
Score = 32.7 bits (74), Expect = 0.41
Identities = 47/304 (15%), Positives = 90/304 (29%), Gaps = 99/304 (32%)
Query: 114 KSQAALRAL----DVCAPPAYGNTNVMCLAITDEN--EATTSFLMQLSTWDKEELDEK-L 166
S+AA + + D YG + L I N T F + + + E
Sbjct: 1638 TSKAA-QDVWNRADNHFKDTYGFS---ILDIVINNPVNLTIHFGGEKG----KRIRENYS 1689
Query: 167 ANRVQVSKRAVAKIIQAFDRLVQRNEKITMIL----KGELNNSNGDPIPSLDEAVREANI 222
A + K + F + NE T KG L+
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEI---NEHSTSYTFRSEKGLLS------------------- 1727
Query: 223 EIQTEN-------------RNLTEQNTKLHAKY---HSI-----------SLKISELQDA 255
T+ +L + HS+ + I L +
Sbjct: 1728 --ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 256 VN--GKETEAAELRNQIDDLQYELSKVQSRNDKLENHL-LEATEKVKLCQQMHTEDGKEK 312
V G + A R+++ Y + + ++ EA + V +++ G
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAI--NPGRVAASFSQEALQYV--VERVGKRTGWLV 1841
Query: 313 DVIKPEETMSN---------VSQKKLDDLQKDLEEAKELAN-NRLQELDKLHLQHREALK 362
+++ N + + L+ + N +LQ++D + LQ +L+
Sbjct: 1842 EIV-------NYNVENQQYVAAGDL-----RALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Query: 363 DVEK 366
+VE
Sbjct: 1890 EVEG 1893
Score = 30.8 bits (69), Expect = 1.7
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 28/102 (27%)
Query: 423 LYNENQLAK---TQA-QEFQSHLSAS-----KNNQQRQIEMMETEELMVQKKLRGEMMQL 473
LY ++ A+ +A F+ S NN L + GE +
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN---------PVNLTIH--FGGEKGK- 1682
Query: 474 EDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSL 515
+IR+ Y + FET + +T I +E+ TS
Sbjct: 1683 -----RIRENY--SAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 51.3 bits (123), Expect = 8e-07
Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 34/276 (12%)
Query: 214 DEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQID-- 271
+ +R+A I +Q R +N S+ I + + L+ +
Sbjct: 835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894
Query: 272 -DLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLD 330
+ ++K + + K+E +E +K+ + + K+
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLH--IGL---------------------ENKIM 931
Query: 331 DLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTS 390
LQ+ ++E + + L++++ L + + + + ++ N T+
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA-------KNATN 984
Query: 391 LTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQR 450
L +I +L + + TE K ++ +E + ++ +E + L K R
Sbjct: 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
Query: 451 QIEMMETE-ELMVQKKLRGEMMQLEDALSQIRKEYE 485
+I E ++KKL E QLE L+ R Y+
Sbjct: 1045 RIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 51.3 bits (123), Expect = 9e-07
Identities = 51/330 (15%), Positives = 114/330 (34%), Gaps = 36/330 (10%)
Query: 44 KFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRF 103
K+ + A Q+ H+ R L + R + + R+ + R
Sbjct: 786 KYMRMRRAAITIQRYVRGHQARCYATFLRRT------------RAAIIIQKFQRMYVVRK 833
Query: 104 DAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELD 163
+ ++ QA LR V + I + + K +
Sbjct: 834 RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLA-RVHYHRTLKAIVY 892
Query: 164 EKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIE 223
+ R ++KR K ++ R V+R +K+ + L+ ++ ++ E
Sbjct: 893 LQCCYRRMMAKRE-LKKLKIEARSVERYKKLHIGLENKI------------MQLQRKIDE 939
Query: 224 IQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSR 283
E ++L E+ L Y + + K+ + + E EA N++ LQ E++K++
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999
Query: 284 NDKLENHLLEATEKV-KLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKEL 342
+ + E K + + K+ +T +++ D K++ E E
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME- 1058
Query: 343 ANNRLQELDKLHLQHREALKDVEKLKMDWE 372
KL + ++ D+ ++ ++
Sbjct: 1059 --------KKLVEETKQLELDLNDERLRYQ 1080
Score = 36.6 bits (85), Expect = 0.022
Identities = 24/200 (12%), Positives = 72/200 (36%), Gaps = 24/200 (12%)
Query: 35 LEEMDIKVLKFQNKKLAQRIEQKNQVE---HELRSRIEQLEKRQTQDDAVLNVVNRYWNQ 91
+ + ++K LK + + + + + +E +L+ +I++ K +N + ++
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Query: 92 LNEDIRILLQRFDAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFL 151
E +R ++ ++E + + +L +E L
Sbjct: 961 ETEKLRSDVE--RLRMSEEEAKNATNRVLSLQ------------------EEIAKLRKEL 1000
Query: 152 MQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIP 211
Q T +K+ ++E +++ V+++ + L E++ + +
Sbjct: 1001 HQTQT-EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059
Query: 212 SLDEAVREANIEIQTENRNL 231
L E ++ +++ E
Sbjct: 1060 KLVEETKQLELDLNDERLRY 1079
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 40.7 bits (94), Expect = 0.001
Identities = 22/217 (10%), Positives = 61/217 (28%), Gaps = 8/217 (3%)
Query: 160 EELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVRE 219
+ +D+ + ++ +R + ++ L + + P L + +R
Sbjct: 437 QTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRA 496
Query: 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVN--------GKETEAAELRNQID 271
+T + + ++ Y S I L + + ++
Sbjct: 497 EGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVN 556
Query: 272 DLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDD 331
L+ LS + + E + + VI E +
Sbjct: 557 VLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGG 616
Query: 332 LQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLK 368
L ++E+ + L+ + H + + + +
Sbjct: 617 LTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEAN 653
Score = 30.3 bits (67), Expect = 1.9
Identities = 32/308 (10%), Positives = 88/308 (28%), Gaps = 53/308 (17%)
Query: 47 NKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRFDAE 106
++ + + E + L + L++ + D+ + W + + R +
Sbjct: 440 DQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGT 499
Query: 107 TADESESKSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELDEKL 166
K+ + + T + L + EL+ +
Sbjct: 500 NFRTVLDKAV---------------QADGQVKECYQSHRDT----IVLLCKPEPELNAAI 540
Query: 167 ANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQT 226
+ ++++ L+ + E++
Sbjct: 541 PSANPAKTMQGSEVVNVLKSLLSNLD------------------------------EVKK 570
Query: 227 ENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDK 286
E L ++ S L +N + EL L ++ + + +
Sbjct: 571 EREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEG 630
Query: 287 LENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNR 346
L ++ + ++ +Q + E ++V+K T + +L +L+E + N
Sbjct: 631 LLKNIQVSHQEFSKMKQSNNEANLREEVLKNLAT----AYDNFVELVANLKEGTKFYNEL 686
Query: 347 LQELDKLH 354
+ L +
Sbjct: 687 TEILVRFQ 694
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 35.2 bits (82), Expect = 0.014
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287
NR+ TE + KY + D + + E +E+ I L+ E+ V+ + L
Sbjct: 3 NRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANL 62
Query: 288 ENHLLEA 294
+N + +A
Sbjct: 63 QNAIADA 69
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 34.0 bits (79), Expect = 0.034
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 228 NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKL 287
+N + K ++ +++ + V ++E +ELR + +L+ EL S L
Sbjct: 5 EKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASL 64
Query: 288 ENHLLEA 294
EN L E
Sbjct: 65 ENSLEET 71
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.50
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 293 EATEKVKLCQQMHTEDGKEKDVI--KPEETMSNVSQKKLDDLQKDLEE--AKELANNRLQ 348
+ E ++ ++ + +E D E+ ++K L++ + E K NNR+
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 349 ELDKLHLQHREA 360
+ K Q +A
Sbjct: 142 D--KAFYQQPDA 151
Score = 29.0 bits (64), Expect = 3.7
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 16/67 (23%)
Query: 35 LEEMDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNR-----YW 89
L+E+D + R + K +E + + EQ+EK + NR ++
Sbjct: 98 LQELDAASKV---MEQEWREKAKKDLEEWNQRQSEQVEKNKIN--------NRIADKAFY 146
Query: 90 NQLNEDI 96
Q + DI
Sbjct: 147 QQPDADI 153
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 31.7 bits (71), Expect = 0.53
Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 7/153 (4%)
Query: 229 RNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288
+ + KL ++ + + + DA A R ++ L+++ R+ +E
Sbjct: 34 EDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIE 93
Query: 289 NHLLEATEKVKLCQQMHTEDGKEKD---VIKPEETMSNVSQKKLDDLQKDLEEAKEL--- 342
L + + + C ++ E+ + ++ + +K +++K + +L
Sbjct: 94 AKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKK 153
Query: 343 -ANNRLQELDKLHLQHREALKDVEKLKMDWEVT 374
Q + Q AL+DV + E T
Sbjct: 154 AKKVDAQGRGDIQPQLDSALQDVNDKYLLLEET 186
>2ga0_A Surface protein VSPA; helical bundle, NI(II) binding sites, immune
system; 2.70A {Borrelia turicatae}
Length = 181
Score = 31.1 bits (70), Expect = 0.64
Identities = 18/147 (12%), Positives = 52/147 (35%), Gaps = 14/147 (9%)
Query: 209 PIPSLDEAVREANIEIQTEN-RNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELR 267
+ S+DE + +I ++N KL + +S+ + ++ K + +L+
Sbjct: 31 LVKSIDELAKAIGKKIGANGLETDADKNAKLISGAYSVISAVDTKLASLEKKVGISDDLK 90
Query: 268 NQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQK 327
+I ++ + S K ++ + L + + + + + + +
Sbjct: 91 GKITTVK---NASTSFLTKAKS------KTADLGKDDVKDADAKTAIDIADTGAKDKGAE 141
Query: 328 KLDDLQKDLEE----AKELANNRLQEL 350
+L L ++ A+ + L
Sbjct: 142 ELIKLNTAIDALLTSAEAAVTAAINAL 168
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 30.7 bits (69), Expect = 0.66
Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 231 LTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENH 290
L ++ +L +K + + +++ L+ + E A + +L+ EL V + LE
Sbjct: 5 LEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQ 64
Query: 291 LLEATEKV-KLCQQMHTEDGKEKDV---IKPEETMSNVSQKKLDDLQKDLEEAKELANNR 346
+ ++K K +++ K K+ + E +K +DDL+ +L K
Sbjct: 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124
Query: 347 LQELDKLHLQHREALKDVEKLK 368
+E+ +L + E L L+
Sbjct: 125 SEEMKQLEDKVEELLSKNYHLE 146
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.4 bits (72), Expect = 1.0
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 27/106 (25%)
Query: 263 AAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMS 322
AA LR ++ E+ ++ + +LE E+ L KEKD
Sbjct: 389 AARLRMALESAPEEIDALERKKLQLE------IEREAL--------KKEKD--------- 425
Query: 323 NVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLK 368
SQ++L ++ ++ + E + +L + RE L+ + + +
Sbjct: 426 PDSQERLKAIEAEIAKLTE----EIAKLRAEWEREREILRKLREAQ 467
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 30.7 bits (70), Expect = 1.4
Identities = 15/94 (15%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 199 KGELNNSNGDPIPSLDEAVREANIEIQTENRNL-TEQNTKLHAKYHSISLKISELQDAVN 257
KGEL + + I S + +R +++ + R+L E+ + ++ + ++
Sbjct: 61 KGELRSKDLPGIISTWQELR----QLREQIRSLEEEKEA--VTE--AVRALVVNQDNSQV 112
Query: 258 GKETEAAELRNQIDDLQYELSKVQSRNDKLENHL 291
++ + LR + +++ +L+ + + +LE
Sbjct: 113 QQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 30.5 bits (70), Expect = 1.5
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 199 KGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNG 258
+ + S D + LD+ RE ++ L ++ + +S +I +L+ G
Sbjct: 21 RDKELVSLVDKVLELDKRRREIIKRLEA-----------LRSERNKLSKEIGKLKR--EG 67
Query: 259 KETEA-----AELRNQIDDLQYELSKVQSRNDKLENHLLE 293
K+T EL+ +ID L+ EL KV+ ++L+N LL
Sbjct: 68 KDTTEIQNRVKELKEEIDRLEEELRKVE---EELKNTLLW 104
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A
{Pyrococcus abyssi} SCOP: d.12.1.3
Length = 107
Score = 29.1 bits (65), Expect = 1.5
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 32 ISTLEEMDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQ 75
+ + EM+IK+ + + KL R E ++ H + + +
Sbjct: 3 LYFMLEMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKG 46
>1yjg_A Surface protein VSPA; helical bundle, immune system; 2.22A
{Borrelia turicatae}
Length = 158
Score = 29.5 bits (66), Expect = 1.6
Identities = 14/121 (11%), Positives = 43/121 (35%), Gaps = 13/121 (10%)
Query: 234 QNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLE 293
+N KL + +S+ + ++ K + +L+ +I ++ + S K ++
Sbjct: 46 KNAKLISGAYSVISAVDTKLASLEKKVGISDDLKGKITTVK---NASTSFLTKAKS---- 98
Query: 294 ATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEE----AKELANNRLQE 349
+ L + + + + + + ++L L ++ A+ +
Sbjct: 99 --KTADLGKDDVKDADAKTAIDIADTGAKDKGAEELIKLNTAIDALLTSAEAAVTAAINA 156
Query: 350 L 350
L
Sbjct: 157 L 157
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 30.6 bits (68), Expect = 1.7
Identities = 14/120 (11%), Positives = 39/120 (32%)
Query: 447 NQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINR 506
+Q+ +E + + L +M +E+ Y+ L+ + + +
Sbjct: 13 EKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQ 72
Query: 507 EMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYRLHAGGSGFDS 566
+M+ L L ++ + V+ + + E + W ++ G +
Sbjct: 73 KMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNI 132
Score = 29.0 bits (64), Expect = 5.5
Identities = 15/117 (12%), Positives = 42/117 (35%)
Query: 234 QNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLE 293
+ K + + +++ V E + + N DD + ++S+ D + +
Sbjct: 7 TAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNN 66
Query: 294 ATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQEL 350
+ + QQ+ + + + ++ +QK L + + R Q++
Sbjct: 67 QSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQI 123
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.4 bits (69), Expect = 1.7
Identities = 8/115 (6%), Positives = 32/115 (27%), Gaps = 13/115 (11%)
Query: 251 ELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGK 310
Q V ++ +++ + + + ++L+ + + ++ +
Sbjct: 149 VFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHG 208
Query: 311 EKDVIKPEETMSNVSQKKLDDLQK-------------DLEEAKELANNRLQELDK 352
E K + + L+ ++ N+ ++ K
Sbjct: 209 ELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKK 263
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 28.3 bits (64), Expect = 2.2
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 229 RNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLE 288
R L +QN L A+ LK + E E ELR Q+D L + ++V+ D L
Sbjct: 26 RFLEQQNKILLAELEQ--LKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 30.3 bits (67), Expect = 2.2
Identities = 25/161 (15%), Positives = 64/161 (39%), Gaps = 2/161 (1%)
Query: 212 SLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQID 271
L+E V+ R ++ L KY+ K + ++ + + + I
Sbjct: 417 PLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAIL 476
Query: 272 DLQYELSKVQSR--NDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKL 329
L++ + ++++ +A+ K+ Q E E+ +E + +++K
Sbjct: 477 QTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME 536
Query: 330 DDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMD 370
+D + L+E + +LQE ++L + + + K ++
Sbjct: 537 NDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 577
Score = 29.5 bits (65), Expect = 3.3
Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 22/265 (8%)
Query: 284 NDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELA 343
++ + TE ++ +H + +E + + +V +L LE+ ++
Sbjct: 336 EQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDF 395
Query: 344 NNRLQE---------LDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNP-TSLTT 393
+ QE L + E +K K F ++ L
Sbjct: 396 CKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGI 455
Query: 394 QLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIE 453
Q ++ +S T + E ++ + +A+ Q+ Q++ +
Sbjct: 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 515
Query: 454 MMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLIT 513
MME +E Q+ L+ ++E + L E E LA Q + + L
Sbjct: 516 MMEQKERSYQEHLKQLTEKME-------NDRVQLLKEQERTLALKLQ-----EQEQLLKE 563
Query: 514 SLQNHNKQIKGEVNRYKRKYKETSA 538
Q ++ +K E+ + K + A
Sbjct: 564 GFQKESRIMKNEIQDLQTKMRRRKA 588
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 29.5 bits (65), Expect = 2.9
Identities = 17/160 (10%), Positives = 51/160 (31%), Gaps = 12/160 (7%)
Query: 409 ETTEYKCLQSAYSVLYNE------------NQLAKTQAQEFQSHLSASKNNQQRQIEMME 456
+ +Y ++ A+ +E L ++ ++ + + Q
Sbjct: 79 KGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKET 138
Query: 457 TEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQ 516
E +K + + + +K + E + ++ + + LQ
Sbjct: 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQ 198
Query: 517 NHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYR 556
+ ++ K +V + K KY+++ E+ + +
Sbjct: 199 DKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 238
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 29.1 bits (64), Expect = 4.1
Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 16/217 (7%)
Query: 165 KLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEI 224
K +++ + +I +A +++ + + + P V
Sbjct: 165 KAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNVRKFDVDVEQFHY 224
Query: 225 QT---ENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQ 281
+ N+ Y + + D V+ K E E+ + E +
Sbjct: 225 LVVLDDYGNVLSVTRTGVRPYVGSEKAKAGIMDKVDHKTPE--EIYEALGFNNEEPQRQN 282
Query: 282 SRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIK-PEETMSNVSQKKLDDL-QKDLEEA 339
+ + D + DV+ E +S++ K D L A
Sbjct: 283 QAKKAAYDVFYSFSMN---------RDRIQSDVLNKAAEVISDIGNKVGDYLGDAYKSLA 333
Query: 340 KELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFN 376
+E+A++ K + +A+ + K+ + FN
Sbjct: 334 REIADDVKNFQGKTIRSYDDAMASLNKVLSNPGFKFN 370
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.9 bits (62), Expect = 4.1
Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 247 LKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHT 306
LK +E + + + E L+ ++ + +++ + L EK L Q+
Sbjct: 6 LKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLL------QEKNDLQLQVQA 59
Query: 307 EDGKEKDVIKPEETMSNVSQ---KKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKD 363
E D + + + K+ ++ K LE+ +E+ + KL + E +D
Sbjct: 60 EQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119
Query: 364 VEKLKM 369
++ L++
Sbjct: 120 IDDLEL 125
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 29.0 bits (64), Expect = 4.5
Identities = 14/130 (10%), Positives = 42/130 (32%)
Query: 427 NQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEM 486
L ++ ++ + + Q E +K + + + +K +
Sbjct: 109 ASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHA 168
Query: 487 LRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRIS 546
E + ++ + + LQ+ ++ K +V + K KY+++ E+ +
Sbjct: 169 ACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQ 228
Query: 547 ERSPWPSGYR 556
+
Sbjct: 229 YMENMEQVFE 238
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 29.1 bits (64), Expect = 4.6
Identities = 21/162 (12%), Positives = 61/162 (37%), Gaps = 9/162 (5%)
Query: 215 EAVREANIEIQTENRNLTEQNTKLHAKYHSI--------SLKISELQDAVNGKETEAAEL 266
V++ + I+ E ++L + + K ++ + S+ + + L
Sbjct: 12 RNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLML 71
Query: 267 RNQIDDLQYELSKVQSRNDKLENHLL-EATEKVKLCQQMHTEDGKEKDVIKPEETMSNVS 325
N+ ++ +++ ++ + + +N L+ + + K QQ G + + +
Sbjct: 72 DNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIV 131
Query: 326 QKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKL 367
+ L +++ L++ +EL E D + + L
Sbjct: 132 AESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSL 173
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.0 bits (64), Expect = 4.7
Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 11/147 (7%)
Query: 409 ETTEYKCLQSAYSVLYNE--------NQLAKTQAQEFQSHLSASKNNQQRQIEMMETEEL 460
+ EY ++A+ + E ++ + S + + M E
Sbjct: 58 KGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERK 117
Query: 461 MVQ---KKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQN 517
++ KK + +L + + + +Y + + + + +
Sbjct: 118 DLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHD 177
Query: 518 HNKQIKGEVNRYKRKYKETSAEIQKVR 544
++ K +V + + KY++ AEI K
Sbjct: 178 RVQKTKDQVQKCREKYEQAIAEITKYN 204
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 29.2 bits (65), Expect = 4.8
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 433 QAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFE 492
+ F + + ++ ++Q +++ K L E +Q+ + ++KE R E
Sbjct: 129 EVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKE-IGERTHAE 187
Query: 493 TNLAANEQTGPINREMRHLITSLQN 517
T + E R I +L+N
Sbjct: 188 TVMVK---------EYRDKIDALKN 203
Score = 28.4 bits (63), Expect = 7.5
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 9/134 (6%)
Query: 208 DPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELR 267
DP+ + ++ E++ E RN + ++ E+ + +NG+ E
Sbjct: 86 DPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDE 145
Query: 268 NQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQK 327
Q D L ++ + E + +L + E G+ E M +
Sbjct: 146 KQFDILNKAVTSYNKILTE------EDLQMRRLATALQKEIGERTHA---ETVMVKEYRD 196
Query: 328 KLDDLQKDLEEAKE 341
K+D L+ +E ++
Sbjct: 197 KIDALKNAIEVERD 210
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 28.5 bits (63), Expect = 5.7
Identities = 23/158 (14%), Positives = 65/158 (41%), Gaps = 3/158 (1%)
Query: 215 EAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQ 274
+ EA + Q + ++ T A S++ +I ++ ++ + A ++++ +
Sbjct: 58 DKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE 117
Query: 275 YELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQK 334
+ + +E+ + EK+ + + + K + + + +KL ++
Sbjct: 118 KAADESERGMKVIESRAQKDEEKM---EIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 174
Query: 335 DLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWE 372
DLE A+E A + +L + + +++ L+ E
Sbjct: 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAE 212
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 28.6 bits (64), Expect = 6.0
Identities = 5/49 (10%), Positives = 17/49 (34%)
Query: 251 ELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVK 299
++ + + E + I LQ + + L+ + + + +
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 28.6 bits (63), Expect = 6.1
Identities = 17/148 (11%), Positives = 47/148 (31%), Gaps = 12/148 (8%)
Query: 409 ETTEYKCLQSAYSVLYNE------------NQLAKTQAQEFQSHLSASKNNQQRQIEMME 456
+ +Y L+ A+ + +L ++ ++ + +
Sbjct: 70 KGPQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRAS 129
Query: 457 TEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQ 516
+K + ++ + +K Y R + +T + + + LQ
Sbjct: 130 RAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQ 189
Query: 517 NHNKQIKGEVNRYKRKYKETSAEIQKVR 544
+ E + K +Y++T AE+ +
Sbjct: 190 ERVGRCTKEAEKMKTQYEQTLAELNRYT 217
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 28.7 bits (65), Expect = 6.3
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 213 LDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETE-AAELRNQID 271
+DEA + + T NL E KL ++ E AV +E E AA LR+
Sbjct: 378 IDEAGSKVRLRSFTTPPNLKELEQKL------DEVRK-EKDAAVQSQEFEKAASLRDTEQ 430
Query: 272 DLQYELSKVQSR-NDKLENHLLEATE 296
L+ ++ + +K E T
Sbjct: 431 RLREQVEDTKKSWKEKQGQENSEVTV 456
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 28.7 bits (65), Expect = 6.6
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 213 LDEA---VREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETE-AAELRN 268
+DEA VR + + L ++ ++ E AV +E E AA LR+
Sbjct: 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEV----------RKEKDAAVQSQEFEKAASLRD 427
Query: 269 QIDDLQYELSKVQSR-NDKLENHLLEATE 296
L+ ++ + +K E T
Sbjct: 428 TEQRLREQVEDTKKSWKEKQGQENSEVTV 456
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A
{Saccharomyces cerevisiae} PDB: 3onx_A
Length = 141
Score = 27.6 bits (61), Expect = 6.9
Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 220 ANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAE-----LRNQIDDLQ 274
+ + + + + T+L ++ K+ +LQD + + AE + +++ +
Sbjct: 1 GSAKNSSNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVS 60
Query: 275 YELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQK 334
+L Q+ KL+ + K + E D + E+ + ++ + DL++
Sbjct: 61 KDLENAQADVLKLQEFIDTEKPHWKKTWE------AELDKVCEEQQFLTLQEELILDLKE 114
Query: 335 DLEEAKE 341
DL +A E
Sbjct: 115 DLGKALE 121
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 27.8 bits (61), Expect = 7.3
Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 3/136 (2%)
Query: 231 LTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENH 290
L + +T++ + ELQ+ E ++ LQ L +
Sbjct: 32 LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM 91
Query: 291 LLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQEL 350
+ + ++ + E K ++ E +Q L+ +K+ + N +L+ L
Sbjct: 92 IGDLQARI---TSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL 148
Query: 351 DKLHLQHREALKDVEK 366
+ Q K +
Sbjct: 149 QQRLEQEVNEHKVTKA 164
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 28.3 bits (64), Expect = 7.4
Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 208 DPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQ-DAVNGKETEAAEL 266
+ + +LD V+E +Q + + + ++ ++ + + L
Sbjct: 28 EALLALDREVQELKKRLQE-----------VQTERNQVAKRVPKAPPEEKEALIARGKAL 76
Query: 267 RNQIDDLQYELSKVQSRNDKLENHLLE 293
+ L+ L + + +LE LL+
Sbjct: 77 GEEAKRLEEALREKE---ARLEALLLQ 100
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 27.9 bits (62), Expect = 8.7
Identities = 5/77 (6%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 326 QKKLDDLQKDLEEAKELANNRL-QELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVW 384
L ++ + N ++L+ + + ++ ++ +
Sbjct: 7 DPPLSSFWTKVQYQRLKELNASGEQLEMGFSDALSRDRAFQGIEHQL-MSQGKRHLEQLR 65
Query: 385 SVNPTSLTTQLPRQIRQ 401
+V +L ++ +
Sbjct: 66 TVKHRPALLELEEKLAK 82
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Length = 77
Score = 26.0 bits (58), Expect = 9.1
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 209 PIPSLDEAVREANIEIQTE---NRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAE 265
P A+R+ + Q E +NL E +K+ +S + DA+ + E+ E
Sbjct: 3 SKPDCTAAMRD--VRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTE 60
Query: 266 LRNQIDDLQYEL 277
R Q+ L E+
Sbjct: 61 YRRQVQSLTMEV 72
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
regulation, thioredoxin, allostery, hydrolase; 2.20A
{Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Length = 357
Score = 28.2 bits (63), Expect = 9.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 471 MQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNR 528
M +++A S+ +K I + L EQ G I+ E+ +++S+ KQI V R
Sbjct: 1 MAVKEATSETKKRSGYEIITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQR 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.127 0.347
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,269,213
Number of extensions: 481248
Number of successful extensions: 1664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1537
Number of HSP's successfully gapped: 273
Length of query: 584
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 485
Effective length of database: 3,937,614
Effective search space: 1909742790
Effective search space used: 1909742790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.6 bits)