RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8072
(584 letters)
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage
SPO1 [TaxId: 10685]}
Length = 99
Score = 29.4 bits (66), Expect = 0.37
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 159 KEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVR 218
K EL + +A +++ +V+K++ +F+ + IT + GD +
Sbjct: 3 KTELIKAIAQDTGLTQVSVSKMLASFE------KIITETVA------KGDKVQLTGFLNI 50
Query: 219 EANIEIQTENRNLTEQNTKLHAKYHSISLKIS-ELQDAVNGKETE 262
+ + N Q A +S+K L+ A G + E
Sbjct: 51 KPVARQARKGFNPQTQEALEIAPSVGVSVKPGESLKKAAEGLKYE 95
>d2oeqa1 a.281.1.2 (A:3-115) YheA-like protein {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 113
Score = 28.9 bits (65), Expect = 0.61
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 404 ESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQ 463
E I + ++ L+ AY + ++ A + Q R ++ +E+
Sbjct: 11 EQAIRASEPFQQLKRAYEDV-RRDETAYRMFANVRDIQLRLHEKQMRGAAILP-DEIEQA 68
Query: 464 KKLRGEMMQLEDALSQIRKEYEM 486
+K Q E + E +M
Sbjct: 69 QKAMALAQQNEKLARLMALEQQM 91
>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain
{Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Length = 140
Score = 29.0 bits (65), Expect = 0.71
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 441 LSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQ 500
+ N Q + ++EL+++ RG+ Q+ +++ E L T +E
Sbjct: 10 WQTAFNRQAHHTDKFSSQELILR---RGQNFQVLMIMNKGLGSNERLEFIVSTGPYPSES 66
Query: 501 TG 502
Sbjct: 67 AM 68
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus
subtilis [TaxId: 1423]}
Length = 123
Score = 29.0 bits (65), Expect = 0.74
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 404 ESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQ 463
+I ET E + A + + NEN T + ++ + N + + +
Sbjct: 16 AKMISETEEVDFFKRAEAQI-NENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKI 74
Query: 464 KKLRGEMMQLEDALSQIRKEYEM 486
L+ E+ ++ + E+
Sbjct: 75 DALQEELEEIPVIQEFRDSQMEV 97
>d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 485
Score = 30.1 bits (66), Expect = 0.90
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 307 EDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEK 366
D +++ L DL KD E L + +ALK ++
Sbjct: 388 SDTTADPACHASSSLTAHEPPLLYDLSKDPGENYNLLGGVAGA----TPEVLQALKQLQL 443
Query: 367 LKMDWEVTFNNEISWLVWSVNPT 389
LK + S + +P
Sbjct: 444 LKAQLDAAVTFGPSQVARGEDPA 466
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus
subtilis [TaxId: 1423]}
Length = 110
Score = 27.7 bits (62), Expect = 1.6
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 404 ESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQ 463
E+ + + E+ L++ Y + N ++ AK + F+ + Q E+ + EE+
Sbjct: 11 ENALRGSEEFTRLKNLYDEV-NADESAKRMFENFRDVQLRLQQKQMAGEEITQ-EEVTQA 68
Query: 464 KKLRGEMMQLEDALSQIRKEYEM 486
+K + Q E + E M
Sbjct: 69 QKTVALVQQHEKISQLMEAEQRM 91
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 111
Score = 27.3 bits (61), Expect = 2.0
Identities = 7/83 (8%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Query: 404 ESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQ 463
+ EYK +++A + + A ++ + + +M +
Sbjct: 12 SRGLRGLPEYKAVKAAKDAI-AADAEASKIFTDYLA-FQEEIQKLAQTGQMPDASFQAKM 69
Query: 464 KKLRGEMMQLEDALSQIRKEYEM 486
+ ++ K+ ++
Sbjct: 70 EGFGKQIQGNSLLSEFFTKQQQL 92
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Length = 90
Score = 25.9 bits (57), Expect = 4.0
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 159 KEELDEKLANRVQVSKRAVAKIIQAF 184
K +L + +A + ++SK +++
Sbjct: 3 KTQLIDVIAEKAELSKTQAKAALEST 28
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 27.5 bits (60), Expect = 4.8
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 84 VVNRYWNQLNEDIRILLQRFDAETADESESKSQAALRALDVCAPPAYG 131
+++ D +L +R A + + PP G
Sbjct: 275 ILSGAQRI--HDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAG 320
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum
sativum) [TaxId: 3888]}
Length = 340
Score = 27.2 bits (60), Expect = 5.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 489 IEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNR 528
I + L EQ G I+ E+ +++S+ KQI V R
Sbjct: 2 ITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQR 41
>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus
abyssi [TaxId: 29292]}
Length = 93
Score = 25.8 bits (57), Expect = 5.1
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 38 MDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKR 74
M+IK+ + + KL R E ++ H + + +
Sbjct: 1 MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVK 37
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli,
beta-isoform [TaxId: 562]}
Length = 90
Score = 25.6 bits (56), Expect = 5.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 159 KEELDEKLANRVQVSKRAVAKIIQAF 184
K +L +K+A +SK A + + A
Sbjct: 3 KSQLIDKIAAGADISKAAAGRALDAI 28
>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean
(Glycine max), beta-conglycinin alpha prime subunit
[TaxId: 3847]}
Length = 185
Score = 26.9 bits (59), Expect = 6.1
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 8/91 (8%)
Query: 101 QRFDAETADESESKSQAALRALDVCAPPAY--------GNTNVMCLAITDENEATTSFLM 152
QR E K +A L D+ PA + N I EN
Sbjct: 86 QRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAENNQRNFLAG 145
Query: 153 QLSTWDKEELDEKLANRVQVSKRAVAKIIQA 183
+ + S + + +I++
Sbjct: 146 SKDNVISQIPSQVQELAFPGSAKDIENLIKS 176
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId:
2336]}
Length = 90
Score = 25.5 bits (56), Expect = 6.3
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 159 KEELDEKLANRVQVSKRAVAKIIQAF 184
K+EL +++A + K+ V I+
Sbjct: 3 KKELIDRVAKKAGAKKKDVKLILDTI 28
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 90
Score = 25.1 bits (55), Expect = 7.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 159 KEELDEKLANRVQVSKRAVAKIIQAF 184
K EL +A +SK+ K + A
Sbjct: 3 KTELINAVAETSGLSKKDATKAVDAV 28
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 26.6 bits (57), Expect = 8.3
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 464 KKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIK 523
+LR E QL++ + RK T P+ R +L+ H +I
Sbjct: 5 DQLRQEAEQLKNQIRDARKA-----CADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 524 G 524
Sbjct: 60 A 60
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 24.8 bits (54), Expect = 9.4
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 40 IKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLE 72
I+ ++ +N Q I+ + L ++ L
Sbjct: 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 26.4 bits (58), Expect = 9.6
Identities = 4/36 (11%), Positives = 15/36 (41%)
Query: 312 KDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRL 347
+ ++ +M + +D ++ +E +L +
Sbjct: 37 TNAVEEVSSMPGSFRFTIDRAVEECKELYDLGIQGI 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.127 0.347
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,980,203
Number of extensions: 90605
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 63
Length of query: 584
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 494
Effective length of database: 1,171,896
Effective search space: 578916624
Effective search space used: 578916624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.2 bits)