BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8073
(593 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 124/169 (73%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A+KIV AGDAAVGKS F+ R K F + +TLGVDFQMKT+ VD LQLWDTAG
Sbjct: 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAG 86
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510
QERFRS+ K+YFR+ADGV+LLYDVT E+SF +++ WV+ +E+ ++PI++ NK D+R
Sbjct: 87 QERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
A +G KC+ GEKLA YGA+F ETS+K G NI++A++ L+R V
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 160 bits (406), Expect = 1e-39, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 117/173 (67%), Gaps = 6/173 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G D FK++ GD+ VGK+C ++RFS++ F + ST+G+DF+++TI +D + + LQ+W
Sbjct: 1 GHMDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQERFR++T Y+R A G+ML+YD+TNE+SF++++NW+ +EE + +I NK
Sbjct: 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
D+ Q + +E GEKLA YG FMETS+K+ N+ +A L+R +
Sbjct: 121 CDVNDKRQ------VSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 160 bits (405), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 116/170 (68%), Gaps = 6/170 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK++ GD+ VGK+C ++RFS++ F + ST+G+DF+++TI +D + + LQ+WDTA
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T Y+R A G+ML+YD+TNE+SF++++NW+ +EE + +I NK D+
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
Q + +E GEKLA YG FMETS+K+ N+ +A L+R +
Sbjct: 126 NDKRQ------VSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 112/169 (66%), Gaps = 7/169 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDT 448
D AFK++ GD+ VGK+C + RF FL ST+G+DF+ K + VD V LQ+WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVD 508
AGQERFRS+T Y+R A ++LLYDVTN+ SF++++ W+ + E ++ + +++ NKVD
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
+ + + RE GEKLA++YG FMETS+K+G N+ A A+++
Sbjct: 128 SAHE------RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 116/180 (64%), Gaps = 7/180 (3%)
Query: 381 NSLEPTG-EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER 439
SL P G E D FK++ G++ VGKSC + RFS + + N ST+GVDF++KT+ +D +
Sbjct: 9 GSLVPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK 68
Query: 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP 499
V LQ+WDTAGQERFR++T +Y+R + G++++YDVT++ SFN VK W++ ++ +++
Sbjct: 69 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL 128
Query: 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
++ NK DL K + ++ +V ++ A F+ETS+ N+ DA + ++R +
Sbjct: 129 KLLVGNKCDL------KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 117/185 (63%), Gaps = 9/185 (4%)
Query: 375 PLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI 434
PL S+S S+ P E D FK++ GD+ VGKSC + RF+ + + ST+GVDF+++TI
Sbjct: 2 PLGSMS-SMNP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 58
Query: 435 RVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT 494
+D + + LQ+WDTAGQERFR++T +Y+R A G++++YDVT++ SFN+VK W++ ++
Sbjct: 59 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 118
Query: 495 ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIA 554
++ ++ NK DL K +D ++ A G F+ETS+K+ N+ + +
Sbjct: 119 SENVNKLLVGNKCDLTTK------KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172
Query: 555 LSRHV 559
++ +
Sbjct: 173 MAAEI 177
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 112/180 (62%), Gaps = 8/180 (4%)
Query: 382 SLEPTGEP--DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER 439
L P G P D FK++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D +
Sbjct: 13 GLVPRGSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 72
Query: 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP 499
+ LQ+WDTAGQERFR++T +Y+R A G++++YDVT++ SFN+VK W++ ++ ++
Sbjct: 73 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 132
Query: 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
++ NK DL K +D ++ A G F+ETS+K+ N+ + + ++ +
Sbjct: 133 KLLVGNKCDLTTK------KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 117/185 (63%), Gaps = 9/185 (4%)
Query: 375 PLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI 434
PL S+S S+ P E D FK++ GD+ VGK+C + RF+ + + ST+GVDF+++TI
Sbjct: 2 PLGSMS-SMNP--EYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTI 58
Query: 435 RVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT 494
+D + + LQ+WDTAGQERFR++T +Y+R A G++++YDVT++ SFN+VK W++ ++
Sbjct: 59 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 118
Query: 495 ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIA 554
++ ++ NK DL K +D ++ A G F+ETS+K+ N+ + +
Sbjct: 119 SENVNKLLVGNKCDLTTK------KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172
Query: 555 LSRHV 559
++ +
Sbjct: 173 MAAEI 177
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 112/172 (65%), Gaps = 6/172 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK++ G++ VGKSC + RFS + + N ST+GVDF++KT+ +D + V LQ+WD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQERFR++T +Y+R + G++++YDVT++ SFN VK W++ ++ +++ ++ NK
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL K + ++ +V ++ A F+ETS+ N+ DA + ++R +
Sbjct: 124 DL------KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 112/172 (65%), Gaps = 6/172 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK++ G++ VGKSC + RFS + + N ST+GVDF++KT+ +D + V LQ+WD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQERFR++T +Y+R + G++++YDVT++ SFN VK W++ ++ +++ ++ NK
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL K + ++ +V ++ A F+ETS+ N+ DA + ++R +
Sbjct: 124 DL------KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 109/172 (63%), Gaps = 6/172 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D + + LQ+WD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQERFR++T +Y+R A G++++YDVT++ SFN+VK W++ ++ ++ ++ NK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL K +D ++ A G F+ETS+K+ N+ + + ++ +
Sbjct: 122 DLTTK------KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 109/172 (63%), Gaps = 6/172 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D + + LQ+WD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQERFR++T +Y+R A G++++YDVT++ SFN+VK W++ ++ ++ ++ NK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL K +D ++ A G F+ETS+K+ N+ + + ++ +
Sbjct: 122 DLTTK------KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 104/161 (64%), Gaps = 6/161 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D + + LQ+WD
Sbjct: 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQERFR++T +Y+R A G++++YDVT++ SFN+VK W++ ++ ++ ++ NK
Sbjct: 89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
DL K +D ++ A G F+ETS+K+ N+
Sbjct: 149 DLTTK------KVVDYTTAKEFADSLGIPFLETSAKNATNV 183
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 109/170 (64%), Gaps = 7/170 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D KI+ GD+ VGKSC + RF ++ F +T+G+DF++KT+ ++ + V LQLWDTA
Sbjct: 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T Y+R A G++L+YDVT+ER+F ++K W + V E + +++ NK D+
Sbjct: 78 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ + + GE LA++ G F+E+S+K+ DN+ + L++ +
Sbjct: 138 ET-------RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 108/172 (62%), Gaps = 6/172 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D + + LQ+WD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQERFR++T +Y+R A G++++YDVT++ S+ +VK W++ ++ ++ ++ NK
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL K +D ++ A G F+ETS+K+ N+ A + ++ +
Sbjct: 125 DLTTK------KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 108/172 (62%), Gaps = 6/172 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D + + LQ+WD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQERFR++T +Y+R A G++++YDVT++ S+ +VK W++ ++ ++ ++ NK
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL K +D ++ A G F+ETS+K+ N+ A + ++ +
Sbjct: 125 DLTTK------KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 108/172 (62%), Gaps = 6/172 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D + + LQ+WD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQERFR++T +Y+R A G++++YDVT++ SFN+VK W++ ++ ++ ++ K
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKC 123
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL K +D ++ A G F+ETS+K+ N+ + + ++ +
Sbjct: 124 DLTTK------KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
KI+ GD+ VGKSC + RF ++ F +T+G+DF++KT+ ++ + V LQLWDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADA 513
FR++T Y+R A G++L+YDVT+ER+F ++K W + V E + +++ NK D+
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-- 126
Query: 514 QAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ + + GE LA++ G F+E+S+K+ DN+ + L++ +
Sbjct: 127 -----RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 109/170 (64%), Gaps = 7/170 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D KI+ GD+ VGKSC + RF ++ F +T+G+DF++KT+ ++ + V LQ+WDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T Y+R A G++L+YD+T+ER+F ++K W + V E + +++ NK D+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ + + GE LA++ G F+E+S+K+ DN+ + L++ +
Sbjct: 121 ET-------RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 111/172 (64%), Gaps = 6/172 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK++ GD+ VGKSC + RF+ + + + ST+GVDF+++TI ++ + V LQ+WD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQERFR++T +Y+R A G++++YDVT+ SF++VK W++ ++ ++ ++ NK
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKC 124
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL + + + + G +LA +G F+ETS+K+ N+ A ++ +
Sbjct: 125 DLVSK------RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 106/166 (63%), Gaps = 6/166 (3%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D + + LQ+WDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADA 513
FR++T +Y+R A G++++YDVT++ SFN+VK W++ ++ ++ ++ NK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK- 119
Query: 514 QAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
K +D ++ A G F+ETS+K+ N+ + + ++ +
Sbjct: 120 -----KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 106/168 (63%), Gaps = 6/168 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK + GD VGKSC + +F+ + F T+GV+F + I +D + + LQ+WDTAGQE
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
FRS+T++Y+R A G +L+YD+T +FN + W+E + + +++ I++ NK DL +
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ K +E GE A+++G IFMETS+K+ N+ +A I ++ +Y
Sbjct: 131 REVK------KEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 106/168 (63%), Gaps = 6/168 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK + GD VGKSC + +F+ + F T+GV+F + + +D + + LQ+WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
FRS+T++Y+R A G +L+YD+T +FN + +W+E + + +++ I++ NK DL +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
K RE GE A+++G IFMETS+K+ N+ +A I ++ +Y
Sbjct: 142 RDVK------REEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 17/174 (9%)
Query: 382 SLEPTG---EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDE 438
L P G + D FKIV G+A VGK+C + RF++ +F G+T+GVDF +KT+ ++
Sbjct: 13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING 72
Query: 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSI 498
V LQ+WDTAGQERFRS+T++Y+R A+ ++L YD+T E SF + W+ +E+ N +
Sbjct: 73 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 132
Query: 499 PIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG----AIFMETSSKSGDNI 548
V+ NK+DL REV ++ A+++ ++ETS+K DN+
Sbjct: 133 ITVLVGNKIDLAE----------RREVSQQRAEEFSEAQDMYYLETSAKESDNV 176
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 136 bits (343), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D KI+ GD+ VGKSC + RF ++ F +T+G+DF++KT+ ++ + V LQLWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T Y+R A G++L+YDVT+ER+F ++K W + V E + +++ NK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
+ + + GE LA++ G F+E+S+K+ DN+ + L++
Sbjct: 121 E-------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 109/176 (61%), Gaps = 11/176 (6%)
Query: 386 TGEPDRA----FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
+G+PD FK+V GDA+VGK+C + RF F + GST+GVDF MKT+ + + V
Sbjct: 19 SGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV 78
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV 501
LQ+WDTAGQERFR++T++Y+R A+G +L YD+T SF SV +W+E V + ++I +
Sbjct: 79 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL 138
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALS 556
+ NK DL ++ + + LA+ Y + +ETS+K N+ +A + ++
Sbjct: 139 LIGNKSDLSE------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 135 bits (340), Expect = 6e-32, Method: Composition-based stats.
Identities = 63/168 (37%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D KI+ GD+ VGKSC + RF ++ F +T+G+DF++KT+ ++ + V LQ+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T Y+R A G++L+YD+T+ER+F ++K W + V E + +++ NK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
+ + + GE LA++ G F+E+S+K+ DN+ + L++
Sbjct: 121 E-------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 106/168 (63%), Gaps = 6/168 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK + GD VGKSC +++F+++ F+ T+GV+F + I V + + LQ+WDTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
RFR++T++Y+R A G +++YD+T ++N + +W+ +T + I++ NK DL A
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + E ++ A++ G +F+E S+K+G+N+ DA + ++ +Y
Sbjct: 136 ------RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 107/170 (62%), Gaps = 6/170 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK + G+A GKSC +++F ++ F + T+GV+F K I V + V LQ+WDTA
Sbjct: 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 67
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFRS+T++Y+R A G +L+YD+T+ ++N++ NW+ + +I I++C NK DL
Sbjct: 68 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 127
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
AD + ++ + AQ+ +F+ETS+ +G+N+ +A + +R +
Sbjct: 128 DADREVTFLEA------SRFAQENELMFLETSALTGENVEEAFVQCARKI 171
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 106/166 (63%), Gaps = 6/166 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G D FK++ G+++VGK+ F++R++ + F ST+G+DF++KT+ E+ V LQ+W
Sbjct: 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQER+R++T Y+R A G +L+YD+TNE SFN+V++W ++ + ++ +++ NK
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552
D+ + + + E G+ LA+Q G F E S+K ++ A
Sbjct: 138 CDMEEE------RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
SL P G R FKI+ GD+ VGK+C YRF F ++ +T+GVDF+ + + +D +
Sbjct: 10 SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69
Query: 442 ALQLWDTAGQERFR-SMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE-VTENSIP 499
+QLWDTAGQERFR SM ++Y+R V+ +YD+TN SF+S+ W+E ++ + N IP
Sbjct: 70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129
Query: 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547
++ NK DLR+ Q + ++ +K A + ETS+K+ ++
Sbjct: 130 RILVGNKCDLRSAIQ------VPTDLAQKFADTHSMPLFETSAKNPND 171
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 109/177 (61%), Gaps = 8/177 (4%)
Query: 385 PTGEP--DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVA 442
P G D FK + G+A GKSC +++F ++ F + T+GV+F K I V + V
Sbjct: 2 PLGSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 61
Query: 443 LQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVI 502
LQ+WDTAGQERFRS+T++Y+R A G +L+YD+T+ ++N++ NW+ + +I I++
Sbjct: 62 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 121
Query: 503 CANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
C NK DL AD + ++ + AQ+ +F+ETS+ +G+++ +A + +R +
Sbjct: 122 CGNKKDLDADREVTFLE------ASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 105/168 (62%), Gaps = 6/168 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK + GD VGKSC +++F+++ F+ T+GV+F + I V + + LQ+WDTAGQ
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
RFR++T++Y+R A G +++YD+T ++N + +W+ +T + I++ NK DL A
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + E ++ A++ G +F+E S+K+G+N+ DA + ++ +Y
Sbjct: 151 ------RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 6/162 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G P R FK+VF G+ +VGK+ I RF + F N +T+G+DF KT+ +++R V LQLW
Sbjct: 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQERFRS+ +Y R + +++YD+TN SF+ W++ V + + I++ NK
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
DL Q + E GE+ A++ +F+ETS+K+G N+
Sbjct: 129 TDLSDKRQ------VSTEEGERKAKELNVMFIETSAKAGYNV 164
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 103/159 (64%), Gaps = 6/159 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FKI+ G+++VGK+ F++R++ + F ST+G+DF++KTI +++ + LQ+WDTA
Sbjct: 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQER+R++T Y+R A G +L+YD+TNE SFN+V++W ++ + ++ +++ NK D+
Sbjct: 63 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
+ + + E G +LA G F E S+K N+
Sbjct: 123 EDE------RVVSSERGRQLADHLGFEFFEASAKDNINV 155
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 6/170 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK + G+A GKSC +++F ++ F + T+GV+F K I V + V LQ+WDTA
Sbjct: 6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
G ERFRS+T++Y+R A G +L+YD+T+ ++N++ NW+ + +I I++C NK DL
Sbjct: 66 GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
AD + ++ + AQ+ +F+ETS+ +G+++ +A + +R +
Sbjct: 126 DADREVTFLE------ASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 128 bits (321), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/162 (39%), Positives = 99/162 (61%), Gaps = 6/162 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G P R FK+VF G+ +VGK+ I RF + F N +T+G+DF KT+ +++R + LQLW
Sbjct: 1 GSPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQERFRS+ +Y R + +++YD+TN SF W++ V + + I++ NK
Sbjct: 61 DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
DL Q + E GE+ A++ +F+ETS+K+G N+
Sbjct: 121 TDLADKRQ------VSIEEGERKAKELNVMFIETSAKAGYNV 156
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 6/162 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G P R FK+VF G+ +VGK+ I RF + F N +T+G+DF KT+ +++R V LQLW
Sbjct: 1 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAG ERFRS+ +Y R + +++YD+TN SF W++ V + + I++ NK
Sbjct: 61 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
DL AD + + E GE+ A++ +F+ETS+K+G N+
Sbjct: 121 TDL-ADKRQVSI-----EEGERKAKELNVMFIETSAKAGYNV 156
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 100/162 (61%), Gaps = 6/162 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G P R FK+VF G+ +VGK+ I RF + F N +T+G+DF KT+ +++R + LQLW
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAG ERFRS+ +Y R + +++YD+TN SF W++ V + + I++ NK
Sbjct: 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
DL AD + + E GE+ A++ +F+ETS+K+G N+
Sbjct: 128 TDL-ADKRQVSI-----EEGERKAKELNVMFIETSAKAGYNV 163
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 6/162 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G P R FK+VF G+ +VGK+ I RF + F N +T+G+DF KT+ +++R V LQLW
Sbjct: 11 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAG ERFRS+ +Y R + +++YD+TN SF W++ V + + I++ NK
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 130
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
DL AD + + E GE+ A++ +F+ETS+K+G N+
Sbjct: 131 TDL-ADKRQVSI-----EEGERKAKELNVMFIETSAKAGYNV 166
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 10/170 (5%)
Query: 380 SNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER 439
S L P R FKI+ GD+ VGK+C YRF F ++ +T+GVDF+ + + +D
Sbjct: 19 SGCLPPARS--RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGE 76
Query: 440 NVALQLWDTAGQERFR-SMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE-VTENS 497
+ +QLWDTAGQERFR SM ++Y+R V+ +YD TN SF+S+ W+E ++ + N
Sbjct: 77 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND 136
Query: 498 IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547
IP ++ NK DLR+ Q + ++ +K A + ETS+K+ ++
Sbjct: 137 IPRILVGNKCDLRSAIQ------VPTDLAQKFADTHSXPLFETSAKNPND 180
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 100/159 (62%), Gaps = 6/159 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FKI+ G+++VGK+ F++R++ + F ST+G+DF++KTI +++ + LQ+WDTA
Sbjct: 6 DYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 65
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
G ER+R++T Y+R A G +L YD+TNE SFN+V++W ++ + ++ +++ NK D
Sbjct: 66 GLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDX 125
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
+ + + E G +LA G F E S+K N+
Sbjct: 126 EDE------RVVSSERGRQLADHLGFEFFEASAKDNINV 158
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 8/158 (5%)
Query: 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451
KI+ G++ VGKS + RF+ + F +L +T+GVDF++KTI VD L +WDTAGQ
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE-VTENSIPIVICANKVDLR 510
ERFR++T +Y+R A GV+L+YDVT +F + NW+ +E T N I + NK+D
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-- 132
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
K + +DR G K A+++ +F+E S+K+ D +
Sbjct: 133 -----KENREVDRNEGLKFARKHSXLFIEASAKTCDGV 165
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 105/180 (58%), Gaps = 8/180 (4%)
Query: 382 SLEPTGE--PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER 439
L P G D FK + G A GKSC +++F + F T+GV+F + + V +
Sbjct: 13 GLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK 72
Query: 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP 499
V LQ+WDTAGQERFRS+T++Y+R A G +L+YD+T+ ++NS+ W+ + +I
Sbjct: 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV 132
Query: 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+++C NK DL + + ++ + AQ+ +F+ETS+ +G+N+ +A + +R +
Sbjct: 133 VILCGNKKDLDPEREVTFLEA------SRFAQENELMFLETSALTGENVEEAFLKCARTI 186
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 125 bits (314), Expect = 6e-29, Method: Composition-based stats.
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 3/168 (1%)
Query: 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451
+ K+V G+AAVGKS + RF F T+G F + + ++E V ++WDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511
ERF S+ Y+R A +++YDVT +SF ++WV+ + E I I + NK+D
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX-- 120
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
Q G + + RE GEKLA++ G +F ETS+K+G+N+ D + + +
Sbjct: 121 -LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 103/167 (61%), Gaps = 7/167 (4%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
L P G D FK++ G+++VGK+ F++R++ + F ST+G+DF++KT+ ++ +
Sbjct: 13 GLVPRGS-DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI 71
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV 501
LQ+WDTAGQER+R++T Y+R A G +L+YD+ N+ SF +V++W ++ + ++ ++
Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI 131
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
+ NK DL + + + E G +LA G F E S+K N+
Sbjct: 132 LVGNKCDLEDE------RVVPAEDGRRLADDLGFEFFEASAKENINV 172
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 124 bits (311), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 6/156 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+VF G+ AVGK+ I RF + F N ST+G+DF KT+ +DE V LQLWDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
RFRS+ +Y R + +++YD+TN +SF + W++ + + I + NK DL
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL--- 118
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
++ + E G + AQ+Y F ETS+K+G NI
Sbjct: 119 ---GDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNI 151
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 6/156 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+VF G+ +VGK+ I RF + F N +T+G+DF KT+ +++R V LQLWDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
RFRS+ +Y R + +++YD+TN SF W++ V + + I++ NK DL AD
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDL-AD 121
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
+ I E GE+ A++ +F+ETS+K+G N+
Sbjct: 122 K-----RQITIEEGEQRAKELSVMFIETSAKTGYNV 152
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 102/178 (57%), Gaps = 10/178 (5%)
Query: 382 SLEPTGEP---DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDE 438
L P G P D +++ G VGK+ + RF+ + F ST+GVDF++KT+ +
Sbjct: 13 GLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG 72
Query: 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSI 498
+ + LQ+WDTAGQERF S+T Y+R A G++L+YD+T + +F+ + W++ +++
Sbjct: 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132
Query: 499 PIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDNILDALIAL 555
+++ NK+D D + I R+ GEK AQQ G F E S+K N+ + + L
Sbjct: 133 ELLLVGNKLDCETDRE------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 6/156 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+VF G+ +VGK+ I RF + F N +T+G+DF KT+ +++R V LQLWDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
RFRS+ +Y R + +++YD+TN SF W++ V + + I++ NK DL AD
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-AD 120
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
+ + E GE+ A++ +F+ETS+K+G N+
Sbjct: 121 KRQVSI-----EEGERKAKELNVMFIETSAKAGYNV 151
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 106/180 (58%), Gaps = 6/180 (3%)
Query: 381 NSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN 440
SL P G D FK+V GD+ VGKS + RF++ F + ST+GV+F ++I+VD +
Sbjct: 9 GSLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 68
Query: 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPI 500
+ Q+WDTAGQER+R++T Y+R A G +L+YD+ ++ +V+ W++ + + +++I I
Sbjct: 69 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 128
Query: 501 VICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
++ NK DLR ++ + + A++ G F+ETS+ N+ A + +Y
Sbjct: 129 MLVGNKSDLRH------LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 121 bits (304), Expect = 9e-28, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 83/115 (72%)
Query: 395 IVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454
++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D + + LQ+WDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
R++T +Y+R A G++++YDVT++ SFN+VK W++ ++ ++ ++ NK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 103/173 (59%), Gaps = 6/173 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK+V GD+ VGKS + RF++ F + ST+GV+F ++I+VD + + Q+WD
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAGQER+R++T Y+R A G +L+YD+ ++ +V+ W++ + + +++I I++ NK
Sbjct: 85 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
DLR ++ + + A++ G F+ETS+ N+ A + +Y
Sbjct: 145 DLRH------LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 105/177 (59%), Gaps = 17/177 (9%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI--RVDE------ 438
G+ D K + GD+ VGK+ +Y+++ F +K +T+G+DF+ K + R +
Sbjct: 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVG 65
Query: 439 --RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN 496
+ + LQLWDTAG ERFRS+T +FR A G +LL+D+TNE+SF +V+NW+ ++ +
Sbjct: 66 RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125
Query: 497 SIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552
P IV+C NK DL + + E +LA++YG + ETS+ +G NI A+
Sbjct: 126 ENPDIVLCGNKSDLEDQ------RAVKEEEARELAEKYGIPYFETSAANGTNISHAI 176
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++AVGKS + RF K F ST+G F +T+ +D+ V ++WDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL--- 123
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 124 ---ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++AVGKS + RF K F ST+G F +T+ +D+ V ++WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK DL
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL--- 124
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 125 ---ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 7/159 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK++ GD+ VGKS + RF+ F +T+GVDF+++T+ ++ V LQ+WDTA
Sbjct: 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T Y+R GV+++YDVT+ SF +VK W+ + + ++ I++ NK D
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILV-GNKND- 124
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
D + K ++ E K A Q G ETS+K N+
Sbjct: 125 --DPER---KVVETEDAYKFAGQMGIQLFETSAKENVNV 158
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 14/173 (8%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R K+ GD VGKS ++RF ++ F + T+G F KT++ +WDTAG
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510
QERFR++ Y+R + +++YD+T E +F+++KNWV + + SI + I NK DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL- 122
Query: 511 ADAQAKGVKCIDREVGEKLAQQYG----AIFMETSSKSGDNILDALIALSRHV 559
D REV E+ A+ Y AIF+ETS+K+ NI + I +SR +
Sbjct: 123 TDV---------REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++AVGKS + RF K F ST+G F +++ +D+ V ++WDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TN+ +F K WV+ ++ SI I + NK DL
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ E + A +FMETS+K+ N+ D +A+++ +
Sbjct: 129 ------RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 106/185 (57%), Gaps = 25/185 (13%)
Query: 386 TGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN----- 440
+G+ D K++ GD+ VGK+ F+YR++ F K +T+G+DF+ K + + +
Sbjct: 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78
Query: 441 -----VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE 495
V LQLWDTAGQERFRS+T +FR A G +L++D+T+++SF +V+NW+ ++
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 496 NSIP-IVICANKVDLRADAQAKGVKCIDREVGEK----LAQQYGAIFMETSSKSGDNILD 550
P IV+ NK DL REV E+ LA +YG + ETS+ +G N+
Sbjct: 139 CENPDIVLIGNKADLPD----------QREVNERQARELADKYGIPYFETSAATGQNVEK 188
Query: 551 ALIAL 555
A+ L
Sbjct: 189 AVETL 193
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++ VGKS + RF K F ST+G F +T+ +D+ V ++WDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL--- 123
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 124 ---ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 6/179 (3%)
Query: 381 NSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN 440
SL P G +FK+V G+ VGK+ + R+ + F +K +TL F K + + +
Sbjct: 9 GSLVPRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKR 68
Query: 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPI 500
V L +WDTAGQERF ++ Y+R ++G +L+YD+T+E SF VKNWV+ + ++ N I +
Sbjct: 69 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICL 128
Query: 501 VICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
I NK+DL + + + E A+ GA TS+K I + + L + +
Sbjct: 129 CIVGNKIDLEKERH------VSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 25/177 (14%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN------ 440
G+ D K++ GD+ VGK+ F+YR++ F K +T+G+DF+ K + D +
Sbjct: 6 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 441 ----VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN 496
V LQLWDTAG ERFRS+T +FR A G +L++D+T+++SF +V+NW+ ++
Sbjct: 66 KAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 125
Query: 497 SIP-IVICANKVDLRADAQAKGVKCIDREVGEK----LAQQYGAIFMETSSKSGDNI 548
P IV+ NK DL REV E+ LA++YG + ETS+ +G N+
Sbjct: 126 ENPDIVLIGNKADLPD----------QREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 25/177 (14%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN------ 440
G+ D K++ GD+ VGK+ F+YR++ F K +T+G+DF+ K + D +
Sbjct: 6 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 441 ----VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN 496
V LQLWDTAG ERFRS+T +FR A G +L++D+T+++SF +V+NW+ ++
Sbjct: 66 KAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 125
Query: 497 SIP-IVICANKVDLRADAQAKGVKCIDREVGEK----LAQQYGAIFMETSSKSGDNI 548
P IV+ NK DL REV E+ LA++YG + ETS+ +G N+
Sbjct: 126 ENPDIVLIGNKADLPD----------QREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++ VGKS + RF K F ST+G F +T+ +D+ V ++WDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL--- 123
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 124 ---ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++ VGKS + RF K F ST+G F +T+ +D+ V ++WDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL--- 123
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 124 ---ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++ VGKS + RF K F ST+G F +T+ +D+ V ++WDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL--- 123
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 124 ---ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK+V GD+ VGKS + RF++ F + ST+GV+F ++I+VD + + Q+WD
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAG ER+R++T Y+R A G +L+YD+ ++ +V+ W++ + + +++I I++ NK
Sbjct: 85 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
DLR ++ + + A++ G F+ETS+ N+ A + +Y
Sbjct: 145 DLRH------LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 94/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++AVGKS + RF K F ST+G F +T+ +D+ V ++WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK DL
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL--- 124
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + A +F ETS+K+ N+ + A+++ +
Sbjct: 125 ---ANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++ VGKS + RF K F ST+G F +T+ +D+ V ++WDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL--- 123
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 124 ---ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 99/171 (57%), Gaps = 6/171 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FKIV GD+ VGKS + RF+K F ST+GV+F +T+ ++ + + Q+WDTA
Sbjct: 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQER+R++T Y+R A G +++YD++ S+ + +W+ + E ++++ + + NK DL
Sbjct: 71 GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
++ + E + AQ+ +F ETS+ + +N+ A L +Y
Sbjct: 131 AH------LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++AVGKS + RF K F ST+G F +T+ +D+ V ++WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL--- 122
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 123 ---ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 102/174 (58%), Gaps = 6/174 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK+V GD+ VGKS + RF++ F + ST+GV+F ++I+VD + + Q+WDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQER+R +T Y+R A G +L+YD+ ++ +V+ W++ + + +++I I++ NK DL
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVFI 563
R ++ + + A++ F+ETS+ N+ +A + +Y +
Sbjct: 123 RH------LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 25/177 (14%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN------ 440
G+ D K++ GD+ VGK+ F+YR++ F K +T+G+DF+ K + D +
Sbjct: 6 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 441 ----VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN 496
V LQLWDTAG ERFRS+T +FR A G +L +D+T+++SF +V+NW ++
Sbjct: 66 KAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYC 125
Query: 497 SIP-IVICANKVDLRADAQAKGVKCIDREVGEK----LAQQYGAIFMETSSKSGDNI 548
P IV+ NK DL REV E+ LA++YG + ETS+ +G N+
Sbjct: 126 ENPDIVLIGNKADLPD----------QREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 14/177 (7%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G R K+ GD VGKS ++RF ++ F + T+G F KT++ +W
Sbjct: 1 GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAG ERFR++ Y+R + +++YD+T E +F+++KNWV + + SI + I NK
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYG----AIFMETSSKSGDNILDALIALSRHV 559
DL D REV E+ A+ Y AIF+ETS+K+ NI + I +SR +
Sbjct: 121 CDL-TDV---------REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++AVGKS + RF K F ST+G F +T+ +D+ V ++WDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TN +F KNWV+ ++ +I I + NK DL +
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 124 ------RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 25/177 (14%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN------ 440
G+ D K++ GD+ VGK+ F+YR++ F K +T+G+DF+ K + D +
Sbjct: 6 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 441 ----VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN 496
V LQLWDTAG ERFRS+T +FR A G +L +D+T+++SF +V+NW ++
Sbjct: 66 KAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYC 125
Query: 497 SIP-IVICANKVDLRADAQAKGVKCIDREVGEK----LAQQYGAIFMETSSKSGDNI 548
P IV+ NK DL REV E+ LA++YG + ETS+ +G N+
Sbjct: 126 ENPDIVLIGNKADLPD----------QREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G +FK+V G+ VGK+ + R+ + F +K +TLG F K + + + V L +W
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQERF ++ Y+R ++G +L+YD+T+E SF VKNWV+ + ++ N I + I NK
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+DL + + + E A+ GA TS+K I + + L + +
Sbjct: 121 IDLEKERH------VSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 113 bits (282), Expect = 4e-25, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 386 TGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQL 445
+ E D FK+V GD+ VGKS + RF++ F + ST+GV+F ++I+VD + + Q+
Sbjct: 2 SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 61
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICAN 505
WDTAG ER+R++T Y+R A G +L+YD+ ++ +V+ W++ + + +++I I++ N
Sbjct: 62 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 121
Query: 506 KVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
K DLR ++ + + A++ G F+ETS+ N+ A + +Y
Sbjct: 122 KSDLRH------LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 105/172 (61%), Gaps = 7/172 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV-DERNVALQLWDT 448
D FKIV GD+ VGKS + RF+++ F + ST+GV+F K+I++ + + + Q+WDT
Sbjct: 5 DYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDT 64
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVD 508
AGQER+R++T Y+R A G +L+YD+T + SF +++ W++ + + +++I I++ NK D
Sbjct: 65 AGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSD 124
Query: 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
L K ++ I+ + A++ F+ETS+ N+ A L +Y
Sbjct: 125 L------KHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY 170
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 112 bits (280), Expect = 5e-25, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK+V GD+ VGKS + RF++ F + ST+GV+F ++I+VD + + Q+WD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAG ER+R++T Y+R A G +L+YD+ ++ +V+ W++ + + +++I I + NK
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
DLR ++ + + A++ G F+ETS+ N+ A + +Y
Sbjct: 121 DLRH------LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 112 bits (280), Expect = 7e-25, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E D FK+V GD+ VGKS + RF++ F + ST+GV+F ++I+VD + + Q+WD
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
TAG ER+R++T Y+R A G +L+YD+ ++ +V+ W++ + + +++I I + NK
Sbjct: 67 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 126
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
DLR ++ + + A++ G F+ETS+ N+ A + +Y
Sbjct: 127 DLRH------LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 14/182 (7%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
L P G R K+ GD VGKS + RF ++ F + + T+G F KT+
Sbjct: 13 GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH 72
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV 501
+WDTAGQERF S+ Y+R + +++YD+T + SF ++K WV+ ++E +I +
Sbjct: 73 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQY----GAIFMETSSKSGDNILDALIALSR 557
I NK DL +D REV K A++Y GAI +ETS+K+ NI + +SR
Sbjct: 133 IAGNKCDL-SDI---------REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISR 182
Query: 558 HV 559
+
Sbjct: 183 QI 184
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++AVGKS + RF K F ST+G F +T+ +D+ V ++WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TN +F KNWV+ ++ +I I + NK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 126 ------RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++AVGKS + RF K F ST+ F +T+ +D+ V ++WDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+ S+ Y+R A +++YD+TN +F KNWV+ ++ +I I + NK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 126 ------RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G +FK+V G+ VGK+ + R+ + F +K +TL F K + + + V L +W
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQERF ++ Y+R ++G +L+YD+T+E SF VKNWV+ + ++ N I + I NK
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+DL + + + E A+ GA TS+K I + + L + +
Sbjct: 121 IDLEKERH------VSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 89/158 (56%), Gaps = 9/158 (5%)
Query: 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451
A K+V G+ AVGKS I R+ K +F T+GVDF + I+V++ +V L LWDTAGQ
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVE-AVEEVTENSIPIVICANKVDLR 510
E F ++TK Y+R A +L++ T+ SF ++ +W E V EV IP + NK+DL
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLL 122
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
D+ CI E E LA++ F TS K N+
Sbjct: 123 DDS------CIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 108 bits (271), Expect = 6e-24, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 6/178 (3%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
S+ G K+V GD GKS + RF K+ F+ ST+G F +T+ V++ V
Sbjct: 2 SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV 501
++WDTAGQER+ S+ Y+R A ++++DVTN+ SF K WV+ ++ ++ +
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMA 121
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ NK DL DA+ + E + AQ+ G FMETS+K+ N+ + ++R +
Sbjct: 122 LAGNKSDL-LDARK-----VTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 94/159 (59%), Gaps = 6/159 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FKIV GD+ VGKS + RF+ + F + ST+GV+F +TI V+ + + Q+WDTA
Sbjct: 8 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
G ER+R++T Y+R A G +++YD++ S+ + +W+ + E ++++ + + NK DL
Sbjct: 68 GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
++ + + + A + +F ETS+ + DN+
Sbjct: 128 ------AHLRAVPTDEAKNFAMENQMLFTETSALNSDNV 160
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 97/176 (55%), Gaps = 22/176 (12%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K++ GD+ VGK+ + ++ + F N+ +T+G DF K + VD+R V +Q+WDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW-----VEAVEEVTENSIPIVICANKV 507
RF+S+ ++R AD +L++DVT +F ++ +W ++A EN P V+ NK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN-FPFVVLGNKI 127
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQY-----GAIFMETSSKSGDNILDALIALSRH 558
DL +R+V K AQ + + ETS+K N+ A ++R+
Sbjct: 128 DLE-----------NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 383 LEPTGEPDR--AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN 440
L P G D FK+V G++ VGK+ + RF++ F + +T+GV+F +T+ +
Sbjct: 14 LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73
Query: 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPI 500
V Q+WDTAG ER+R++T Y+R A G +L++D+T +++ V+ W++ + + E +I +
Sbjct: 74 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 501 VICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
++ NK DL +QA+ V E A+ G +F+ETS+ N+ A + + ++
Sbjct: 134 MLVGNKSDL---SQAREVPT---EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 97/176 (55%), Gaps = 22/176 (12%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K++ GD+ VGK+ + ++ + F N+ +T+G DF K + VD+R V +Q+WDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW-----VEAVEEVTENSIPIVICANKV 507
RF+S+ ++R AD +L++DVT +F ++ +W ++A EN P V+ NK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN-FPFVVLGNKI 127
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQY-----GAIFMETSSKSGDNILDALIALSRH 558
DL +R+V K AQ + + ETS+K N+ A ++R+
Sbjct: 128 DLE-----------NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 22/176 (12%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K++ GD+ VGK+ + ++ + F N+ +T+G DF K + VD+R V +Q+WDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW-----VEAVEEVTENSIPIVICANKV 507
RF+S+ ++R AD +L++DVT +F ++ +W ++A EN P V+ NK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN-FPFVVLGNKI 127
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQY-----GAIFMETSSKSGDNILDALIALSRH 558
D +R+V K AQ + + ETS+K N+ A ++R+
Sbjct: 128 DFE-----------NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 99/168 (58%), Gaps = 6/168 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V G++ VGK+ + RF++ F + +T+GV+F +T+ + V Q+WDTAG E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
R+R++T Y+R A G +L++D+T +++ V+ W++ + + E +I +++ NK DL
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL--- 127
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+QA+ V E A+ G +F+ETS+ N+ A + + ++
Sbjct: 128 SQAREVPT---EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 22/176 (12%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K++ GD+ VGK+ + ++ + F N+ +T+G DF K + VD+R V +Q+WDTAG E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW-----VEAVEEVTENSIPIVICANKV 507
RF+S+ ++R AD +L++DVT +F ++ +W ++A EN P V+ NK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN-FPFVVLGNKI 127
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQY-----GAIFMETSSKSGDNILDALIALSRH 558
DL +R+V K AQ + + ETS+K N+ A ++R+
Sbjct: 128 DLE-----------NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 22/190 (11%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +W
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSRHV---- 559
VD++ DR+V K ++ + + S+KS N + L+R +
Sbjct: 124 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
Query: 560 ---YVFIPCV 566
+V +PC+
Sbjct: 173 NLEFVAMPCL 182
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 11/171 (6%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVA-LQLWDTAGQ 451
K++ GD+ VGK+ ++R+ + + + +T+G DF K + VD VA +Q+WDTAGQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWV-EAVEEVTENS---IPIVICANKV 507
ERF+S+ ++R AD +L+YDVTN SF ++K+W E + NS P VI NK+
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
D + K + + ++LA+ G I TS+K+ N+ A ++R
Sbjct: 129 DAE-----ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +W
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 128
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
VD++ DR+V K ++ + + S+KS N + L+R
Sbjct: 129 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +W
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
VD++ DR+V K ++ + + S+KS N + L+R
Sbjct: 124 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +W
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 65 DTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
VD++ DR+V K ++ + + S+KS N + L+R
Sbjct: 124 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 22/186 (11%)
Query: 385 PTGEPDRA--FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVA 442
P G ++ FKI+ GD VGKS + R+ F ++L T+GV+F K + VD V
Sbjct: 2 PLGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVT 61
Query: 443 LQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW----VEAVEEVTENSI 498
+Q+WDTAGQERFRS+ ++R +D +L + V + +SF ++ NW + + S
Sbjct: 62 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 121
Query: 499 PIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-----IFMETSSKSGDNILDALI 553
P VI NK D++ +R+V + AQ + + ETS+K N+ A
Sbjct: 122 PFVILGNKTDIK-----------ERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFE 170
Query: 554 ALSRHV 559
R +
Sbjct: 171 EAVRRI 176
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K TLGV+ + + +W
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
VD++ DR+V K ++ + + S+KS N + L+R
Sbjct: 124 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +W
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE++ + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 65 DTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
VD++ DR+V K ++ + + S+KS N + L+R
Sbjct: 124 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +W
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+F + Y+ +A ++ +DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
VD++ DR+V K ++ + + S+KS N + L+R
Sbjct: 124 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK++ GD VGKS + R+ F +L T+GV+F K + VD V +Q+WDTAGQE
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW----VEAVEEVTENSIPIVICANKVD 508
RFRS+ ++R +D +L + V + +SF ++ NW + + S P VI NK+D
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 509 LRADAQAKGVKCIDREVGEKLAQQY-----GAIFMETSSKSGDNILDALIALSRHV 559
+ +R+V + AQ + + ETS+K N+ A R V
Sbjct: 128 IS-----------ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +W
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSRHV 559
VD++ DR+V K ++ + + S+KS N + L+R +
Sbjct: 124 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK++ GD VGKS + R+ F +L T+GV+F K + VD V +Q+WDTAGQE
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW----VEAVEEVTENSIPIVICANKVD 508
RFRS+ ++R +D +L + V + +SF ++ NW + + S P VI NK+D
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
Query: 509 LRADAQAKGVKCIDREVGEKLAQQY-----GAIFMETSSKSGDNILDALIALSRHV 559
+ +R+V + AQ + + ETS+K N+ A R V
Sbjct: 130 IS-----------ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 97.1 bits (240), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K TLGV+ + + +W
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSRHV 559
VD++ DR+V K ++ + + S+KS N + L+R +
Sbjct: 124 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Query: 381 NSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN 440
S+ GEP FK+V GD GK+ F+ R F K +TLGV+ +
Sbjct: 1 GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 60
Query: 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPI 500
+ +WDTAG E+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPI
Sbjct: 61 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPI 119
Query: 501 VICANKVDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
V+C NKVD++ DR+V K ++ + + S+KS N + L+R
Sbjct: 120 VLCGNKVDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +W
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAG E+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 65 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
VD++ DR+V K ++ + + S+KS N + L+R
Sbjct: 124 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R K +TLGV+ + + +W
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 128
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
VD++ DR+V K ++ + + S+KS N + L+R
Sbjct: 129 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +W
Sbjct: 1 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAG E+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NK
Sbjct: 61 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNK 119
Query: 507 VDLRADAQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSRHV 559
VD++ DR+V K ++ + + S+KS N + L+R +
Sbjct: 120 VDIK-----------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 15/168 (8%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V GD GK+ F+ R F K +TLGV+ + + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C NKVD++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-- 120
Query: 513 AQAKGVKCIDREVGEK---LAQQYGAIFMETSSKSGDNILDALIALSR 557
DR+V K ++ + + S+KS N + L+R
Sbjct: 121 ---------DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 20/176 (11%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K++ GD VGKS + R+ F ++ T+GV+F + + VD R V LQ+WDTAGQE
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW----VEAVEEVTENSIPIVICANKVD 508
RF+S+ ++R AD +L + V + +SF ++ NW + + P V+ NKVD
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 509 LRADAQAKGVKCIDREVGEKLAQQYGA-----IFMETSSKSGDNILDALIALSRHV 559
DR+V + AQ + ++ETS+K N+ A R V
Sbjct: 128 KE-----------DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 10/167 (5%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV-DERNVALQL 445
G R KIV GD A GK+ F++E F + T+G+DF ++ I + NV LQ+
Sbjct: 1 GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS--IPIV-I 502
WD GQ M Y A GV+L+YD+TN +SF ++++W V++V+E S P+V +
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120
Query: 503 CANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549
NK+DL ++ I E + Q+ G S+K+GD++
Sbjct: 121 VGNKIDLEH------MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R +K+V G VGKS +F + +F+ K T+ D K + VD + L++ DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDL 509
E+F +M Y + G L+Y +T + +FN +++ E + V + + +P+++ NK DL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 510 RADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDNILDALIALSRHV 559
+ + + +E G+ LA+Q+ F+E+S+KS N+ + L R +
Sbjct: 121 EDE------RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + ++ E ++ V ++ +P+V+ NK DL +
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + LA+ YG F+ETS+K+ + DA L R +
Sbjct: 124 -------RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + ++ E ++ V ++ +P+V+ NK DL +
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +D + + LA+ YG F+ETS+K+ + DA L R +
Sbjct: 124 -------RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R +K+V G VGKS +F + +F+ K T+ D K + VD + L++ DTAG
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAG 62
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDL 509
E+F +M Y + G L+Y +T + +FN +++ E + V + + +P+++ NK DL
Sbjct: 63 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 122
Query: 510 RADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDNILDALIALSRHV 559
+ + + +E G+ LA+Q+ F+E+S+KS N+ + L R +
Sbjct: 123 EDE------RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R +K+V G VGKS +F + +F+ K T+ D K + VD + L++ DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICANKVDL 509
E+F +M Y + G L+Y +T + +FN +++ E + V + +P+++ NK DL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 510 RADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDNILDALIALSRHV 559
+ + + +E G+ LA+Q+ F+E+S+KS N+ + L R +
Sbjct: 121 EDE------RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V GD GK+ F+ R F K +T+GV+ + + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510
+F + Y+ A ++++DVT+ ++ +V NW + V EN IPIV+C NKVD++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVK 129
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R K V GD AVGK+C + ++ F T+ +F + VD V L LWDTAG
Sbjct: 5 RFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAG 63
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDL 509
QE + + +R AD +L + + ++ S+ ++ K W+ ++ IPIV+ K+DL
Sbjct: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPG-IPIVLVGTKLDL 122
Query: 510 RADAQ----AKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
R D Q G I GE+L + GA+ ++E SSK+ N+
Sbjct: 123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNV 166
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V GD GK+ F+ R F K +T+GV+ + + + +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
+F + Y+ A ++++DVT+ ++ +V NW + V EN IPIV+C NKVD++
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVK-- 122
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ VK K QY + S+KS N + L+R +
Sbjct: 123 --ERKVKAKTITFHRKKNLQY----YDISAKSNYNFEKPFLWLARKL 163
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R +K+V G VGKS +F + +F+++ T+ D K + VD + L++ DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICANKVDL 509
E+F +M Y + G L+Y +T + +FN +++ E + V + +P+++ NK DL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 510 RADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDNILDALIALSRHV 559
+ + + +E G+ LA+Q+ F+E+S+KS N+ + L R +
Sbjct: 121 EDE------RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK+V GD GK+ F+ R F K +T+GV+ + + + +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
+F + Y+ A ++++DVT+ ++ +V NW + V EN IPIV+C NKVD++
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVK-- 121
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ VK K QY + S+KS N + L+R +
Sbjct: 122 --ERKVKAKTITFHRKKNLQY----YDISAKSNYNFEKPFLWLARKL 162
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 97/170 (57%), Gaps = 9/170 (5%)
Query: 375 PLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI 434
PL S++ S P+ E +K+V GD VGKS +F +++F++ T+ D +K
Sbjct: 2 PLGSMATSAVPS-ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHT 59
Query: 435 RVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT 494
+D + L + DTAGQE F +M + Y R DG +++Y VT++ SF V + + + V
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 495 EN-SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543
+ S P+++ ANKVDL ++ + R+ G+++A +Y ++ETS+K
Sbjct: 120 DRESFPMILVANKVDLM------HLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R K V GD AVGK+C + ++ F T+ +F + VD V L LWDTAG
Sbjct: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAG 63
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSF-NSVKNWVEAVEEVTENSIPIVICANKVDL 509
QE + + +R AD +L + + ++ S+ N K W+ + +PI++ K+DL
Sbjct: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDL 122
Query: 510 RADAQ----AKGVKCIDREVGEKLAQQYGA-IFMETSSKSGDNI 548
R D Q G I GE+L + G+ I++E SSK+ N+
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNV 166
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 97/170 (57%), Gaps = 9/170 (5%)
Query: 375 PLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI 434
PL S++ S P+ E +K+V GD VGKS +F +++F+ + T+ D +K
Sbjct: 2 PLGSMATSAVPS-ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHT 59
Query: 435 RVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT 494
+D + L + DTAGQE F +M + Y R DG +++Y VT++ SF V + + + V
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 495 EN-SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543
+ S P+++ ANKVDL ++ + R+ G+++A +Y ++ETS+K
Sbjct: 120 DRESFPMILVANKVDLM------HLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 98/170 (57%), Gaps = 9/170 (5%)
Query: 375 PLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI 434
PL S++ S P+ E +K+V GD VGKS +F +++F+++ T+ ++ T
Sbjct: 2 PLGSMATSAVPS-ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT- 59
Query: 435 RVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT 494
+D + L + DTAGQE F +M + Y R DG +++Y VT++ SF V + + + V
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 495 EN-SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543
+ S P+++ ANKVDL ++ + R+ G+++A +Y ++ETS+K
Sbjct: 120 DRESFPMILVANKVDL------MHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 46/210 (21%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER-------- 439
E ++K V G+++VGKS + R +K+ F +T+G F + +++
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 440 -----------------------------NVALQLWDTAGQERFRSMTKNYFRRADGVML 470
N+ +WDTAGQER+ S+ Y+R A ++
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA 530
++D++N + + K WV + +++ N I I++ ANK+D K +D +K A
Sbjct: 123 VFDISNSNTLDRAKTWVNQL-KISSNYI-IILVANKID-------KNKFQVDILEVQKYA 173
Query: 531 QQYGAIFMETSSKSGDNILDALIALSRHVY 560
Q +F++TS+K+G NI + L+ +Y
Sbjct: 174 QDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Query: 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVA-LQLWDTAG 450
+KI GD VGK+ +I R F +T+G T D+ NV +WDTAG
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510
QE+ + Y+ A G +L +DVT+ + ++ WV+ + V N PIV+CANK+D++
Sbjct: 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
+ I +++ ++ + + E S+K+ N + L+R
Sbjct: 131 NRQK------ISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R K V GD AVGK+C + ++ F T+ +F + V+ V L LWDTAG
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAG 65
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDL 509
QE + + +R AD +L + + ++ S+ +V K W+ ++ +PIV+ K+DL
Sbjct: 66 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIVLVGTKLDL 124
Query: 510 RADAQ----AKGVKCIDREVGEKLAQQYGA-IFMETSSKSGDNILDALIALSRHV 559
R D Q G I GE+L + GA ++E SSKS +N+ A R V
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S++ P G R+ K+V GD GK+ + F+ F T+ + M ++V
Sbjct: 22 SMAGEEAPPGV--RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVK 78
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTEN 496
+ V L +WDTAGQ+ + + ++ A ++L +DVT+ SF+++ N W V +
Sbjct: 79 GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK 138
Query: 497 SIPIVICANKVDLRADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
+PI++ K DLR D + G++ + G+++A+ GA+ ++E S++ DN+
Sbjct: 139 -VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNV 196
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 10/172 (5%)
Query: 385 PTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQ 444
P G K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L
Sbjct: 2 PLGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELA 60
Query: 445 LWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVIC 503
LWDTAGQE + + + D +++ + + + S ++ + W V+ N +PI++
Sbjct: 61 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILV 119
Query: 504 ANKVDLRADAQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
NK DLR D + + + E G +A + GA +ME S+K+ D +
Sbjct: 120 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 171
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K V GD AVGK+C + ++ F T+ +F + VD + V L LWDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGQIVNLGLWDTAGQE 68
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSF-NSVKNWVEAVEEVTENSIPIVICANKVDLRA 511
+ + +R AD +L + + ++ S+ N +K W+ + N +PIV+ K+DLR
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRD 127
Query: 512 DAQ--AKGVKCIDREVGEKLAQQYG-AIFMETSSKSGDNI 548
D A I GE+L +Q G A ++E SSK+ N+
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNV 167
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 10/163 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 125
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
+ + + E G +A + GA +ME S+K+ D +
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 168
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 87/153 (56%), Gaps = 8/153 (5%)
Query: 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451
+K+V GD VGKS +F +++F+ T+ D +K +D + L + DTAGQ
Sbjct: 13 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQ 71
Query: 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLR 510
E F +M + Y R DG +++Y VT++ SF V + + + V + S P+++ ANKVDL
Sbjct: 72 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 131
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543
++ + R+ G+++A +Y ++ETS+K
Sbjct: 132 ------HLRKVTRDQGKEMATKYNIPYIETSAK 158
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 125
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
+ + + E G +A + GA +ME S+K+ D + + +R
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 10/163 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
+ + + E G +A + GA +ME S+K+ D +
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 169
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
+ + + E G +A + GA +ME S+K+ D + + +R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
+ + + E G +A + GA +ME S+K+ D + + +R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 10/163 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
+ + + E G +A + GA +ME S+K+ D +
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 167
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 127
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
+ + + E G +A + GA +ME S+K+ D + + +R
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS +F F+ K T+ DF K I VD L++ DTAG E+F SM Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
G +L+Y + N++SF +K + + V +P+++ NKVDL ++ +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS------S 128
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIA 554
G LA+++G FMETS+KS ++D L A
Sbjct: 129 SEGRALAEEWGCPFMETSAKS-KTMVDELFA 158
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE + +M Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + ++ E ++ V ++ +P+V+ NK DL + + +D
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-------RTVDT 128
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ + LA+ YG F+ETS+K+ + DA L R +
Sbjct: 129 KQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE + +M Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + ++ E ++ V ++ +P+V+ NK DL + + +D
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-------RTVDT 128
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ + LA+ YG F+ETS+K+ + DA L R +
Sbjct: 129 KQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ G VGKS +F + F+ T ++ K + +D V + + DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT--ENSIPIVICANKVDLRA 511
+ ++ NYFR +G +L++ +T SF + + E + V E+ IP+++ NK DL
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
Q + E A+++G ++ETS+K+ N+ L R +
Sbjct: 128 RRQ------VPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F++K T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ G VGKS +F + F+ T ++ K + +D V + + DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT--ENSIPIVICANKVDLRA 511
+ ++ NYFR +G +L++ +T SF + + E + V E+ IP+++ NK DL
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
Q + E A+++G ++ETS+K+ N+ L R +
Sbjct: 124 RRQ------VPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 9/176 (5%)
Query: 385 PTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQ 444
P G +K+V G VGKS + + F+++ ++ D K + +D L
Sbjct: 2 PLGSDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLD 60
Query: 445 LWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVIC 503
+ DTAGQE + +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+
Sbjct: 61 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 120
Query: 504 ANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
NK DL A + ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 121 GNKCDLAA-------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+ K T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 384 EPTGEPDRAF-KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVA 442
+P G+ A K++ G VGKS +F + F+ T ++ K + +D V
Sbjct: 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQ 63
Query: 443 LQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIV 501
+ + DTAGQE + ++ NYFR +G + ++ +T SF + ++ E + V E+ ++P +
Sbjct: 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ NK DL Q + E + A+Q+ ++ETS+K+ N+ L R +
Sbjct: 124 LVGNKSDLEDKRQ------VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAG E + +M Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + ++ E ++ V ++ +P+V+ NK DL + + +D
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-------RTVDT 145
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ + LA+ YG F+ETS+K+ + DA L R +
Sbjct: 146 KQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + V + S ++ + WV V+ N +PI++ ANK DLR+D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-VPIILVANKKDLRSD 144
Query: 513 AQAK 516
+
Sbjct: 145 EHVR 148
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE + +M Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 132
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 133 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE + +M Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 132
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 133 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + SK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 122
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
+ + + E G +A + GA +ME S+K+ D + + +R
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + SK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 122
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
+ + + E G +A + GA +ME S+K+ D + + +R
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 10/163 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 513 AQ-AKGVKCIDREV-----GEKLAQQYGAI-FMETSSKSGDNI 548
A+ + + +E G +A + GA +ME S+K+ D +
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGV 167
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ ++ K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + SK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
+ + + E G +A + GA +ME S+K+ D + + +R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE + +M Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 134
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 135 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ ++ K + +D L + DTAGQE + +M Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL + +D
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-------PTRTVDT 145
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ +LA+ YG F+ETS+K+ + DA L R +
Sbjct: 146 KQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + SK F T+ ++ + + VD R V L LWDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + ++ V++ + + S +V+ W+ V + +PI++ KVDLR D
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQG-VPIILVGCKVDLRND 129
Query: 513 AQA------KGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
Q +G + + + G+ +A Q GA + E S+K+G + + A +R
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + SK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
+ + + E G +A + GA +ME S+K+ D + + +R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + SK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
+ + + E G +A + GA +ME S+K+ D +
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 167
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 432 KTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVE 491
K + +D L + DTAGQE + +M Y R +G + ++ + N +SF + + E ++
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 492 EVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550
V + + +P+V+ NK DL A + ++ + LA+ YG ++ETS+K+ + D
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAA-------RTVESRQAQDLARSYGIPYIETSAKTRQGVED 154
Query: 551 ALIALSRHV 559
A L R +
Sbjct: 155 AFYTLVREI 163
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 8/167 (4%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ G VGKS +F + F+ T ++ K + +D V + + DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRAD 512
+ ++ NYFR +G + ++ +T SF + ++ E + V E+ ++P ++ NK DL
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
Q + E + A+Q+ ++ETS+K+ N+ L R +
Sbjct: 139 RQ------VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K V GD AVGK+C + ++ + F + T+ D ++ V + L L+DTAGQE
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRA 511
+ + + D ++ + V N SF +VK WV ++E N +P ++ ++DLR
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-VPFLLIGTQIDLRD 136
Query: 512 DAQAKGV------KCIDREVGEKLAQQYGA-IFMETSS---KSGDNILD-ALIAL 555
D + K I E G+KLA++ GA ++E S+ K + D A+IA+
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 8/167 (4%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ G VGKS +F + F+ T ++ K + +D V + + DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRAD 512
+ ++ NYFR +G + ++ +T SF + ++ E + V E+ ++P ++ NK DL
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
Q + E + A+Q+ ++ETS+K+ N+ L R +
Sbjct: 127 RQ------VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 432 KTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVE 491
K + +D L + DTAGQE + +M Y R +G + ++ + N +SF + + E ++
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 492 EVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550
V + + +P+V+ NK DL A + ++ + LA+ YG ++ETS+K+ + D
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAA-------RTVESRQAQDLARSYGIPYIETSAKTRQGVED 154
Query: 551 ALIALSRHV 559
A L R +
Sbjct: 155 AFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
+ LA+ YG ++ETS+K+ + DA L R
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ N+ DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DT GQE + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTTGQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 87
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 146
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G P R K+V GD A GK+C + SK+ F T+ ++ + I VD + V L LW
Sbjct: 4 GSPIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALW 61
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICAN 505
DTAG E + + + D +++ + + + S ++ + W V+ N +PI++ N
Sbjct: 62 DTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGN 120
Query: 506 KVDLRADAQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
K DLR D + + + E G +A + GA +ME S+K+ D +
Sbjct: 121 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 170
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RAD------AQAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGKE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RAD------AQAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRQD 144
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
+ + + E G +A + A ++E S+K+ + +
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGV 187
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 21 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 79
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 80 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 138
Query: 510 RAD------AQAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 139 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + FSK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPN-VPIILVGNKKDLRQD 144
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
+ + + E G +A + A ++E S+K+ + +
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGV 187
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAGQE +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 12 QAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 70
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 71 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 129
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 130 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 8/167 (4%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ G VGKS +F + F+ T ++ K + +D V + + DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRAD 512
+ ++ NYFR +G + ++ +T SF + ++ E + V E+ ++P ++ NK DL
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
Q + E + A Q+ ++ETS+K+ N+ L R +
Sbjct: 125 RQ------VSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 9 QAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 67
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 68 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 126
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 127 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAG E + +M Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 132
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 133 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K+V G VGKS + + F+++ T+ D K + +D L + DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLE 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRA 511
+ +M Y R +G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ ++ + LA+ YG ++ETS+K+ + DA L R +
Sbjct: 123 -------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
KI G +VGKS +F + F++ T+ F K I V+ + LQL DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW-VEAVEEVTENSIPIVICANKVDLRAD 512
+ + Y +G +L+Y VT+ +SF +K + ++ V + IPI++ NK DL +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552
+ I E G+ LA+ + A F+E+S+K +D
Sbjct: 127 ------RVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A KIV GD AVGK+C + FSK T+ +F ++ L LWDTAG
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAG 80
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDL 509
QE + + + +D V+L + V N SF+++ W ++ + + V+ KVDL
Sbjct: 81 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDL 139
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D G + ++ G+ L Q+ G + ++E SS
Sbjct: 140 RKD----GSDDVTKQEGDDLCQKLGCVAYIEASS 169
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + + F+++ T+ D K + +D L + DTAG E + +M Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G + ++ + N +SF + + E ++ V + + +P+V+ NK DL A + ++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVES 127
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ LA+ YG ++ETS+K+ + DA L R +
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
KI G +VGKS +F + F++ T+ F K I V+ + LQL DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW-VEAVEEVTENSIPIVICANKVDLRAD 512
+ + Y +G +L+Y VT+ +SF +K + ++ V + IPI++ NK DL +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552
+ I E G+ LA+ + A F+E+S+K +D
Sbjct: 127 ------RVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ + T+ D + VD + V L LWDTAG
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 87
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 146
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 8/167 (4%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ G VGKS +F + F+ T ++ K + +D V + + DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRAD 512
+ ++ NYFR +G + ++ +T SF + ++ E + V E+ ++P ++ NK DL
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
Q + E + A+Q+ ++ETS+K+ N+ L R +
Sbjct: 127 RQ------VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A KIV GD AVGK+C + FSK T+ +F ++ L LWDTAG
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAG 79
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDL 509
QE + + + +D V+L + V N SF+++ W ++ + + V+ KVDL
Sbjct: 80 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDL 138
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D G + ++ G+ L Q+ G + ++E SS
Sbjct: 139 RKD----GSDDVTKQEGDDLCQKLGCVAYIEASS 168
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS +F + F+ T+ D K +D+R L + DTAGQE F +M + Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDR 523
+G +L++ VT+ SF + + + V + + P+++ NK DL Q + +
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ------VTQ 130
Query: 524 EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVF 562
E G++LA+Q +ME S+K N+ A L R + F
Sbjct: 131 EEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
KI G +VGKS +F + F++ T+ F K I V+ + LQL DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW-VEAVEEVTENSIPIVICANKVDLRAD 512
+ + Y +G +L+Y VT+ +SF +K + ++ V + IPI++ NK DL +
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552
+ I E G+ LA+ + A F+E+S+K +D
Sbjct: 122 ------RVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 5 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 63
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
E + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 64 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 122
Query: 510 RAD------AQAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 123 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
KI G +VGKS +F + F++ T+ F K I V+ + LQL DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNW-VEAVEEVTENSIPIVICANKVDLRAD 512
+ + Y +G +L+Y VT+ +SF +K + ++ V + IPI++ NK DL +
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552
+ I E G+ LA+ + A F+E+S+K +D
Sbjct: 125 ------RVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 87
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
E + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 88 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 146
Query: 510 RAD------AQAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G P +A K V GD AVGK+C + ++ F + T+ D + VD + V L LW
Sbjct: 1 GSP-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLW 58
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICAN 505
DTAGQE + + + + D ++ + + + SF +V+ W V N+ PI++
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGT 117
Query: 506 KVDLRADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
K+DLR D + K + I G +A++ GA+ ++E S+
Sbjct: 118 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+ G A VGKS + RF + F+ + TL ++ + +D+ V++++ DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRAD 512
+ + R +G +L+YD+T+ SF V ++E+ + ++ +++ NK DL
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD-NILDALIALSRHV 559
Q + E GEKLA + F E S+ +G+ NI + L R V
Sbjct: 148 RQ------VSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 6 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 64
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 65 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 123
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 124 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 10/172 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD A GK+C + SK+ F T+ ++ + I VD + V L LWDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ + + D +++ + + + S ++ + W V+ N +PI++ NK DLR D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRQD 124
Query: 513 AQAK------GVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSR 557
+ + + E G +A + A ++E S+K+ + + + +R
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRA 511
+ + + + D ++ + + + SF+ V+ W V N+ PI++ K+DLR
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 273
Query: 512 DA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
D + K + I G +A++ GA+ ++E S+
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRA 511
+ + + + D ++ + + + SF+ V+ W V N+ PI++ K+DLR
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 273
Query: 512 DA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
D + K + I G +A++ GA+ ++E S+
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRA 511
+ + + + D ++ + + + SF+ V+ W V N+ PI++ K+DLR
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 273
Query: 512 DA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
D + K + I G +A++ GA+ ++E S+
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 61
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V ++ PI++ K+DL
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDL 120
Query: 510 RADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D K + I G +A++ G++ ++E S+
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 61
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V ++ PI++ K+DL
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDL 120
Query: 510 RADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D K + I G +A++ G++ ++E S+
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R K+V G VGK+ ++F + F T+ + K + + + L L DTAG
Sbjct: 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAG 81
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDL 509
Q+ + + ++ G +L+Y VT+ SF +++ + + E + +P+V+ NK DL
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543
+ + + V+ G+KLA+ +GA FME+S++
Sbjct: 142 SPEREVQAVE------GKKLAESWGATFMESSAR 169
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + SF +V+ W V ++ PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDL 119
Query: 510 RADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D K + I G +A++ G++ ++E S+
Sbjct: 120 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+++ G VGKS + RF K F T+ D + I D+ LQ+ DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN--SIPIVICANKVDLR 510
+F +M + + +L+Y +T+ +S +K E + E+ + SIPI++ NK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
+ + + E LA+ + FMETS+K N+
Sbjct: 123 PSREVQSSE------AEALARTWKCAFMETSAKLNHNV 154
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + S+ +V+ W V S PI++ K+DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDL 119
Query: 510 RAD 512
R D
Sbjct: 120 RDD 122
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 386 TGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQL 445
+G +A K V GD AVGK+C + ++ F + T+ D + VD + V L L
Sbjct: 4 SGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGL 62
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICA 504
WDTAGQE + + + + D ++ + + + S+ +V+ W V S PI++
Sbjct: 63 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVG 121
Query: 505 NKVDLRAD 512
K+DLR D
Sbjct: 122 TKLDLRDD 129
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAG 66
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
QE + + + + D ++ + + + S+ +V+ W V S PI++ K+DL
Sbjct: 67 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDL 125
Query: 510 RAD 512
R D
Sbjct: 126 RDD 128
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
E + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDL 509
E + + + + D ++ + + + SF +V+ W V N+ PI++ K+DL
Sbjct: 61 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDL 119
Query: 510 RADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
R D + K + I G +A++ GA+ ++E S+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 29/179 (16%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 62
Query: 451 QE---RFRSMT----------KNYFRR------ADGVMLLYDVTNERSFNSVK-NWVEAV 490
QE R R ++ K+ R AD ++ + + + SF +V+ W V
Sbjct: 63 QEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV 122
Query: 491 EEVTENSIPIVICANKVDLRADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSS 542
N+ PI++ K+DLR D + K + I G +A++ GA+ ++E S+
Sbjct: 123 RHHCPNT-PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 180
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 62
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 63 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 119
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 63
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 120
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 63
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 120
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 12 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 70
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 71 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 127
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 128 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 3 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 61
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 62 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 118
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 119 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 9 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 67
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 68 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 124
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 9 QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 67
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 68 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 124
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 62
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 63 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 119
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
KIV GD+ GK+ ++ F+K+ F T+ ++ + +D + + L LWDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ ++ + +D V++ +D++ + +SV K W ++E N+ +++ K DLR D
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRTD 142
Query: 513 AQA------KGVKCIDREVGEKLAQQYG-AIFMETSSKSGDN 547
+ + G +A+Q G A ++E S+ +N
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ + N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
KIV GD+ GK+ ++ F+K+ F T+ ++ + +D + + L LWDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ ++ + +D V++ +D++ + +SV K W ++E N+ +++ K DLR D
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRTD 147
Query: 513 AQA------KGVKCIDREVGEKLAQQYG-AIFMETSSKSGDN 547
+ + G +A+Q G A ++E S+ +N
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 10/179 (5%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
S++P P K+V G VGKS +F + F++ T+ D K VD
Sbjct: 1 SMDPP--PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPA 57
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPI 500
L + DTAGQE F +M + Y R G +L++ + + +SFN V + V + + P+
Sbjct: 58 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117
Query: 501 VICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
V+ NK DL + Q + R + + E S+K N+ +A L R V
Sbjct: 118 VLVGNKADLESQRQ------VPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
KIV GD+ GK+ ++ F+K+ F T+ ++ + +D + + L LWDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 67
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
+ ++ + +D V++ +D++ + +SV K W ++E N+ +++ K DLR D
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRTD 126
Query: 513 AQA------KGVKCIDREVGEKLAQQYG-AIFMETSSKSGDN 547
+ + G +A+Q G A ++E S+ +N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ + ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K V GD AVGK+ + ++ + + T +F + VD R V LQL DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRAD 512
F + + D +L + V + SF +V + WV + + PI++ + DLR D
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDLRED 139
Query: 513 AQA--KGVKCIDREVGEKLAQQY-----GAIFMETSSKSGDN---ILDALIA 554
+ + KC ++ V E+ A+ A ++E S+ + N + DA I
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV 191
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64
+L +F CD +G++ EEFR LCT ++P D++A+F LD D DG ++ ++FA GF
Sbjct: 28 RLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGF 87
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 64
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTEN--SIPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 65 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 121
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTEN--SIPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTEN--SIPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTEN--SIPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTEN--SIPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKE--VFLNKLGSTLGVDFQMKTIRVDERNVALQLW--DTA 449
K+ G+A VGKS I F+ + FL T GV+ + + + + V+++L+ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEV---TENSIPIVICANK 506
G + ++ Y+ +L++DV++ SF S K W E ++ E + V+ ANK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 507 VDL 509
DL
Sbjct: 142 TDL 144
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTEN--SIPIVICANKV 507
QE + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ + N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 64
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTEN--SIPIVICANKV 507
E + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 65 LEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 121
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
L P G + ++ G GK+ F+ + F + T+G F M+ ++ + NV
Sbjct: 13 GLVPRGSKEE-MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMR--KITKGNV 67
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPI 500
++LWD GQ RFRSM + Y R ++ + D ++ + KN + + + + IP+
Sbjct: 68 TIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV 127
Query: 501 VICANKVDL 509
++ NK DL
Sbjct: 128 LVLGNKRDL 136
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K V GD AVGK+C + ++ F ++ T+ ++ + T+ + L L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTEN--SIPIVICANKV 507
E + + + + D ++ + V + SF +VK W V E+T + P ++ ++
Sbjct: 61 LEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCPKTPFLLVGTQI 117
Query: 508 DLRADAQA------KGVKCIDREVGEKLAQQYGAI-FMETSS---KSGDNILDALI 553
DLR D K I E EKLA+ A+ ++E S+ K N+ D I
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD GK+ + +K+ + T+ ++ + +E+ V L LWDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 71
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNS-VKNW-VEAVEEVTENSIPIVICANKVDLRA 511
+ ++ + +D V+L +D++ + +S +K W E ++ + ++ C K DLR
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC--KTDLRT 129
Query: 512 DAQA------KGVKCIDREVGEKLAQQYGA-IFME----TSSKSGDNIL 549
D + I E G +A+Q GA I++E TS KS +I
Sbjct: 130 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 178
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD GK+ + +K+ + T+ ++ + +E+ V L LWDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNS-VKNW-VEAVEEVTENSIPIVICANKVDLRA 511
+ ++ + +D V+L +D++ + +S +K W E ++ + ++ C K DLR
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC--KTDLRT 145
Query: 512 DAQA------KGVKCIDREVGEKLAQQYGA-IFMETSSKSGDNILDAL 552
D + I E G +A+Q GA I++E S+ + + + ++
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
L P G + ++ G GK+ F+ + F + T+G F M+ +V + NV
Sbjct: 13 GLVPRGSKEE-MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMR--KVTKGNV 67
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPI 500
+++WD GQ RFRSM + Y R + ++ + D + + +N + + + + IP+
Sbjct: 68 TIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPV 127
Query: 501 VICANKVDL 509
++ NK DL
Sbjct: 128 LVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 382 SLEPTGEPDRAFKIVF---------AGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMK 432
L P G D FK +F G GK+ F+ + F + T+G F M+
Sbjct: 13 GLVPRGSLD-WFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMR 69
Query: 433 TIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE 492
++ + NV ++LWD GQ RFRSM + Y R ++ + D ++ + KN + + +
Sbjct: 70 --KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLD 127
Query: 493 VTE-NSIPIVICANKVDL 509
+ IP+++ NK DL
Sbjct: 128 KPQLQGIPVLVLGNKRDL 145
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 377 LSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV 436
+ L L+ + +R +++ G GK+ + +F+ E ++ + TLG F +KT+
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-IDTISPTLG--FNIKTL-- 55
Query: 437 DERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEA--VEEVT 494
+ R L +WD GQ+ RS +NYF DG++ + D + + + +++ VEE
Sbjct: 56 EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 115
Query: 495 ENSIPIVICANKVDLRADAQAKGVKCIDREVGE-KLAQQYGAIFMETSSKSGDNILDAL 552
+ ++I ANK DL + + REV E + + S+ +G+N+L +
Sbjct: 116 AGA-TLLIFANKQDLPGALSSNAI----REVLELDSIRSHHWCIQGCSAVTGENLLPGI 169
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 84/176 (47%), Gaps = 19/176 (10%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQL 445
++ +I+ G GK+ +Y+ KLG + + F ++T++ +N++ +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKL-------KLGEVITTIPTIGFNVETVQY--KNISFTV 65
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVIC 503
WD GQ+R RS+ ++Y+R +GV+ + D + + ++ + E+ N++ +V
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVF- 124
Query: 504 ANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
ANK DL +A I ++G + T + SG+ + + L LS ++
Sbjct: 125 ANKQDL---PEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNL 177
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 377 LSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV 436
+ L L+ + +R +++ G GK+ + +F+ E ++ + TLG F +KT+
Sbjct: 3 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTL-- 57
Query: 437 DERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEA--VEEVT 494
+ R L +WD GQ+ RS +NYF DG++ + D + + + +++ VEE
Sbjct: 58 EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 117
Query: 495 ENSIPIVICANKVDL 509
+ ++I ANK DL
Sbjct: 118 AGA-TLLIFANKQDL 131
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 377 LSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV 436
+ L L+ + +R +++ G GK+ + +F+ E ++ + TLG F +KT+
Sbjct: 3 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTL-- 57
Query: 437 DERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEA--VEEVT 494
+ R L +WD GQ+ RS +NYF DG++ + D + + + +++ VEE
Sbjct: 58 EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 117
Query: 495 ENSIPIVICANKVDL 509
+ ++I ANK DL
Sbjct: 118 AGA-TLLIFANKQDL 131
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 405 KSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR 464
KS + RF K F + T+ D + I D+ LQ+ DT G +F +M + +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEV--TENSIPIVICANKVDLRADAQAKGVKCID 522
+L++ VT+++S + + + ++ + IP+++ NK D + Q + +D
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD---ETQRE----VD 132
Query: 523 REVGEKLAQQYGAIFMETSSKSGDNI 548
+ +AQ++ FMETS+K N+
Sbjct: 133 TREAQAVAQEWKCAFMETSAKMNYNV 158
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K+V GD GK+ + +K+ + T+ ++ + +E+ V L LWDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 70
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNS-VKNW-VEAVEEVTENSIPIVICANKVDLRA 511
+ ++ + +D V+L +D++ + +S +K W E ++ + ++ C K DLR
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC--KTDLRT 128
Query: 512 DAQA------KGVKCIDREVGEKLAQQYGA-IFMETSSKSGDNILDAL 552
D + I E G +A+Q GA I++E S+ + + + ++
Sbjct: 129 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 176
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTA 449
+ +I+ G A GK+ +Y+ L ++ +T+ + F ++T V+ +N++ +WD
Sbjct: 164 KEMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVET--VEYKNISFTVWDVG 217
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSI---PIVICANK 506
GQ++ R + ++YF+ G++ + D + N + E + + E+ + +++ ANK
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANK 275
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL A I ++G + T + SGD + + L LS +
Sbjct: 276 QDL---PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 15/171 (8%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTAGQ 451
+I+ G A GK+ +Y+ L ++ +T+ + F ++T V+ +N++ +WD GQ
Sbjct: 1 MRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQ 54
Query: 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSI---PIVICANKVD 508
++ R + ++YF+ G++ + D + N + E + + E+ + +++ ANK D
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQD 112
Query: 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
L A I ++G + T + SGD + + L LS +
Sbjct: 113 L---PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTAGQE 452
+I+ G A GK+ +Y+ V L ++ +T+ + F ++T V+ RN++ +WD GQ+
Sbjct: 19 RILMVGLDAAGKTTILYK----VKLGEVVTTIPTIGFNVET--VEFRNISFTVWDVGGQD 72
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVICANKVDLR 510
+ R + ++Y+ DG++ + D + + + + + EE +++I I++ ANK DL
Sbjct: 73 KIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI-ILVFANKQDLP 131
Query: 511 ADAQAKGVKCIDREVGEKL----AQQYGAIFMETSSKSGDNILDALIALSRHV 559
A EV EKL ++ T + GD + + L+ H+
Sbjct: 132 NAMSAA-------EVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHL 177
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTA 449
+ +I+ G A GK+ +Y+ L ++ +T+ + F ++T V+ +N++ +WD
Sbjct: 15 KEMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVET--VEYKNISFTVWDVG 68
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSI---PIVICANK 506
GQ++ R + ++YF+ G++ + D + N + E + + E+ + +++ ANK
Sbjct: 69 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANK 126
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL A I ++G + T + SGD + + L LS +
Sbjct: 127 QDL---PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 176
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTA 449
+ +I+ G A GK+ +Y+ L ++ +T+ + F ++T V+ +N++ +WD
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVET--VEYKNISFTVWDVG 69
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSI---PIVICANK 506
GQ++ R + ++YF+ G++ + D + N + E + + E+ + +++ ANK
Sbjct: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANK 127
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL A I ++G + T + SGD + + L LS +
Sbjct: 128 QDL---PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 14/94 (14%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQL 445
++ +I+ G GK+ +Y+ KLG + + F ++T++ +N++ +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKL-------KLGEVITTIPTIGFNVETVQY--KNISFTV 65
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERS 479
WD GQ+R RS+ ++Y+R +GV+ + D +N+RS
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGVIFVVD-SNDRS 98
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 14/91 (15%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQLWDT 448
+I+ G GK+ +Y+ KLG + + F ++T++ +N++ +WD
Sbjct: 1 MRILMVGLDGAGKTTVLYKL-------KLGEVITTIPTIGFNVETVQY--KNISFTVWDV 51
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERS 479
GQ+R RS+ ++Y+R +GV+ + D +N+RS
Sbjct: 52 GGQDRIRSLWRHYYRNTEGVIFVVD-SNDRS 81
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTAG 450
+ +I+ G A GK+ +Y+ L ++ +T+ + F ++T V+ +N++ +WD G
Sbjct: 2 SMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVET--VEYKNISFTVWDVGG 55
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSI---PIVICANKV 507
++ R + ++YF+ G++ + D + N + E + + E+ + +++ ANK
Sbjct: 56 LDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQ 113
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL A I ++G + T + SGD + + L LS +
Sbjct: 114 DL---PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 162
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTA 449
+ +I+ G A GK+ +Y+ L ++ +T+ + F ++T V+ +N+ +WD
Sbjct: 16 KQMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVET--VEYKNICFTVWDVG 69
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVD 508
GQ+R R + K+YF+ G++ + D + V + ++ + V E +++ ANK D
Sbjct: 70 GQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQD 129
Query: 509 L 509
L
Sbjct: 130 L 130
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 27/187 (14%)
Query: 380 SNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIR 435
SNS G ++ +I+ G A GK+ +Y+ KLG ++ V F ++T
Sbjct: 310 SNSPGIEGLSNKEMRILMLGLDAAGKTTILYKL-------KLGQSVTTIPTVGFNVET-- 360
Query: 436 VDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEV 493
V +NV +WD GQ++ R + ++Y+ G++ + D + + + + + +
Sbjct: 361 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 420
Query: 494 TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNIL 549
++I I+I ANK DL DA E+ EKL + + + SGD +
Sbjct: 421 MRDAI-ILIFANKQDL-PDAMKP------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472
Query: 550 DALIALS 556
+ L L+
Sbjct: 473 EGLTWLT 479
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 23/177 (12%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTA 449
+ +I+ G A GK+ +Y+ L ++ +T+ + F ++T V+ +N++ +WD
Sbjct: 19 KEMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVET--VEYKNISFTVWDVG 72
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE----VTENSI---PIVI 502
GQ++ R + ++YF+ G++ + D +N+R VEA +E + E+ + +++
Sbjct: 73 GQDKIRPLWRHYFQNTQGLIFVVD-SNDRD-----RVVEARDELHRMLNEDELRDAVLLV 126
Query: 503 CANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
ANK DL A I ++G +Q T + SG+ + + L LS ++
Sbjct: 127 FANKQDL---PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 180
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 404 GKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFR 463
GK+ + +F+ E ++ + TLG F +KT+ + R L +WD GQ+ RS +NYF
Sbjct: 30 GKTTILKKFNGED-VDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 464 RADGVMLLYDVTNERSFNSVKNWVEA--VEEVTENSIPIVICANKVDL 509
DG++ + D + + + +++ VEE + ++I ANK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGAT-LLIFANKQDL 131
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 376 LLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIR 435
LLS+ L+ PD+ +I+ G GK+ + + + E ++ + T G F +K+
Sbjct: 3 LLSILRKLKSA--PDQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQG--FNIKS-- 55
Query: 436 VDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE 495
V + L +WD GQ + R ++YF D ++ + D + + F + + E +
Sbjct: 56 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK 115
Query: 496 NS-IPIVICANKVDLRADAQA 515
S +P++I ANK DL A A
Sbjct: 116 LSCVPVLIFANKQDLLTAAPA 136
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTA 449
+ +I+ G A GK+ +Y+ L ++ +T+ + F ++T V+ +N+ +WD
Sbjct: 28 KQMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVET--VEYKNICFTVWDVG 81
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVD 508
GQ++ R + ++YF+ G++ + D + ER S + ++E +++ ANK D
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALS 556
+ A V + ++G + + T + G + D L LS
Sbjct: 142 M---PNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLS 186
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 376 LLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIR 435
LLS+ L+ PD+ +I+ G GK+ + + + E ++ + T G F +K+
Sbjct: 2 LLSILRKLKSA--PDQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQG--FNIKS-- 54
Query: 436 VDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE 495
V + L +WD GQ + R ++YF D ++ + D + + F + + E +
Sbjct: 55 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK 114
Query: 496 NS-IPIVICANKVDLRADAQA 515
S +P++I ANK DL A A
Sbjct: 115 LSCVPVLIFANKQDLLTAAPA 135
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+++ G GK+ + +F+ E ++ + TLG F +KT+ + R L +WD G +
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTL--EHRGFKLNIWDVGGLK 56
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEA--VEEVTENSIPIVICANKVDL 509
RS +NYF DG++ + D + + + +++ VEE + ++I ANK DL
Sbjct: 57 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA-TLLIFANKQDL 114
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 87/175 (49%), Gaps = 25/175 (14%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-GVDFQMKTIRVDERNVALQLWDTA 449
+ +I+ G A GK+ +Y+ L ++ +T+ + F ++T V+ +N++ +WD
Sbjct: 16 KEMRILMVGLDAAGKTSILYKLK----LGEIVTTIPTIGFNVET--VEYKNISFTVWDVG 69
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE--------NSIPIV 501
GQ++ R + ++Y++ ++ + D +N+R EA EE+ + N+I ++
Sbjct: 70 GQDKIRPLWRHYYQNTQAIIFVVD-SNDRDRIG-----EAREELMKMLNEDEMRNAI-LL 122
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALS 556
+ ANK DL QA + + ++G + + + + +GD + + L L+
Sbjct: 123 VFANKHDL---PQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLA 174
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 27/177 (15%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQL 445
++ +I+ G A GK+ +Y+ KLG ++ V F ++T V +NV +
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKL-------KLGQSVTTIPTVGFNVET--VTYKNVKFNV 61
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVIC 503
WD GQ++ R + ++Y+ G++ + D + + + + + + ++I I+I
Sbjct: 62 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 120
Query: 504 ANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALS 556
ANK DL DA E+ EKL + + + SGD + + L L+
Sbjct: 121 ANKQDL-PDAMKP------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 27/177 (15%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQL 445
++ +I+ G A GK+ +Y+ KLG ++ V F ++T V +NV +
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKL-------KLGQSVTTIPTVGFNVET--VTYKNVKFNV 60
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVIC 503
WD GQ++ R + ++Y+ G++ + D + + + + + + ++I I+I
Sbjct: 61 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 119
Query: 504 ANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALS 556
ANK DL DA E+ EKL + + + SGD + + L L+
Sbjct: 120 ANKQDL-PDAMKP------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 169
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
++ +I+ G GK+ +Y+ + + T+G + + V N++ +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVEC----VQYCNISFTVWDVG 69
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERS 479
GQ+R RS+ ++Y+ +GV+ + D +N+RS
Sbjct: 70 GQDRIRSLWRHYYCNTEGVIFVVD-SNDRS 98
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 27/173 (15%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQLWDTA 449
+I+ G A GK+ +Y+ KLG ++ V F ++T V +NV +WD
Sbjct: 2 RILMLGLDAAGKTTILYKL-------KLGQSVTTIPTVGFNVET--VTYKNVKFNVWDVG 52
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVICANKV 507
GQ++ R + ++Y+ G++ + D + + + + + + ++I I+I ANK
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQ 111
Query: 508 DLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALS 556
DL DA E+ EKL + + + SGD + + L L+
Sbjct: 112 DL-PDAMKP------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 27/173 (15%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQLWDTA 449
+I+ G A GK+ +Y+ KLG ++ V F ++T V +NV +WD
Sbjct: 2 RILMLGLDAAGKTTILYKL-------KLGQSVTTIPTVGFNVET--VTYKNVKFNVWDVG 52
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVICANKV 507
GQ++ R + ++Y+ G++ + D + + + + + + ++I I+I ANK
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQ 111
Query: 508 DLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALS 556
DL DA E+ EKL + + + SGD + + L L+
Sbjct: 112 DL-PDAMKP------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRF--SKEVFLNKLGSTLGVDFQMKTIRVDE---RNVALQLWDT 448
K+ G+ GK+ + + +K+ L +T+G+D + I++ + R++ L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERS-FNSVKNWVEAVEEVTENSIPIVICANKV 507
AG+E F S ++ + + +YD++ ++ ++ K W+ ++ +S P+++ +
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 508 DLRADAQAKG 517
D+ + Q K
Sbjct: 121 DVSDEKQRKA 130
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 394 KIVFAGDAAVGKSCFIYRF--SKEVFLNKLGSTLGVDFQMKTIRVDE---RNVALQLWDT 448
K+ G+ GK+ + + +K+ L +T+G+D + I++ + R++ L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERS-FNSVKNWVEAVEEVTENSIPIVICANKV 507
AG+E F S ++ + + +YD++ ++ ++ K W+ ++ +S P+++ +
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 508 DLRADAQAKG 517
D+ + Q K
Sbjct: 123 DVSDEKQRKA 132
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQLWDTA 449
+I+ G A GK+ +Y+ KLG ++ V F ++T V +NV +WD
Sbjct: 2 RILXLGLDAAGKTTILYKL-------KLGQSVTTIPTVGFNVET--VTYKNVKFNVWDVG 52
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV-ICANKVD 508
GQ++ R + ++Y+ G++ + D + + + + + E I+ I ANK D
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQD 112
Query: 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALS 556
L A I ++G + + + SGD + + L L+
Sbjct: 113 L---PDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 24/167 (14%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDF------QMKTIRVDE--RNVALQ 444
K+ GD GK+ + + E F K T G++ +K + D+ +
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 445 LWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICA 504
WD GQE + + + R+ MLL D R+ ++ W+ +E+ S P+++
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKS-PVIVVM 157
Query: 505 NKVDLRADAQAKGVKCIDREVGEKLAQQYGAI---FMETSSKSGDNI 548
NK+D + +K+ +++ AI F S K+GD +
Sbjct: 158 NKIDENPSYNIE---------QKKINERFPAIENRFHRISCKNGDGV 195
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDT 448
DR +++ G GK+ +YR + + + V ++T++ +N++ ++WD
Sbjct: 19 ADRKIRVLMLGLDNAGKTSILYRLH---LGDVVTTVPTVGVNLETLQY--KNISFEVWDL 73
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVICANK 506
GQ R + YF D V+ + D T+ K+ + A+ E+ S+ ++I ANK
Sbjct: 74 GGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANK 132
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552
DL DA ++ I ++G +++SSK+GD +++ +
Sbjct: 133 QDL-PDAASEAE--IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G+ D FK++ G++ VGKS F + D + I VD+ V L ++
Sbjct: 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 447 DTAGQERFRSMTKNY-FRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICA 504
D Q +++ + D ++++ VT+ RSF+ V + + + +P+++
Sbjct: 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137
Query: 505 NKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSS 542
NK DL A+++ V E G LA +ETS+
Sbjct: 138 NKSDL---ARSREVSL---EEGRHLAGTLSCKHIETSA 169
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 22/197 (11%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S+ L+ G ++ K+VF G GK+ ++ K+ L + TL + TI
Sbjct: 21 GFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHML-KDDRLGQHVPTLHPTSEELTIA-- 77
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV-EEVTEN 496
+ +D G E+ R + KNY +G++ L D + K + A+ + T +
Sbjct: 78 --GMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETIS 135
Query: 497 SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALS 556
++PI+I NK+D R DA ++ EKL + +G ++ +T+ K G+ L L A
Sbjct: 136 NVPILILGNKID-RTDAISE----------EKLREIFG-LYGQTTGK-GNVTLKELNA-- 180
Query: 557 RHVYVFIPCVYLKDLPY 573
R + VF+ C LK Y
Sbjct: 181 RPMEVFM-CSVLKRQGY 196
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R +I+ G GK+ +YR + + T+G F ++T V +N+ Q+WD G
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVET--VTYKNLKFQVWDLGG 55
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
Q R + Y+ D V+ + D + +R S V +EE +V+ ANK D+
Sbjct: 56 QTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQL 445
++ +I+ G A GK+ +Y+ KLG ++ V F ++T V +NV +
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKL-------KLGQSVTTIPTVGFNVET--VTYKNVKFNV 61
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVIC 503
WD G ++ R + ++Y+ G++ + D + + + + + + ++I I+I
Sbjct: 62 WDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 120
Query: 504 ANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALS 556
ANK DL DA E+ EKL + + + SGD + + L L+
Sbjct: 121 ANKQDL-PDAMKP------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQLWDT 448
+I+ G A GK+ +Y+ KLG ++ V F ++T V +NV +WD
Sbjct: 3 MRILMLGLDAAGKTTILYKL-------KLGQSVTTIPTVGFNVET--VTYKNVKFNVWDV 53
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVICANK 506
G ++ R + ++Y+ G++ + D + + + + + + ++I I+I ANK
Sbjct: 54 GGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANK 112
Query: 507 VDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALS 556
DL DA E+ EKL + + + SGD + + L L+
Sbjct: 113 QDL-PDAMKP------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 159
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG----VDFQMKTIRVDERNVALQLWDT 448
+I+ G A GK+ +Y+ KLG ++ V F ++T V +NV +WD
Sbjct: 4 MRILMLGLDAAGKTTILYKL-------KLGQSVTTIPTVGFNVET--VTYKNVKFNVWDV 54
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV--EEVTENSIPIVICANK 506
G ++ R + ++Y+ G++ + D + + + + + + ++I I+I ANK
Sbjct: 55 GGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANK 113
Query: 507 VDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALS 556
DL DA E+ EKL + + + SGD + + L L+
Sbjct: 114 QDL-PDAMKP------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 160
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 395 IVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454
+ G GKS +F + F+++ L + + VD + V L++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV---EEVTENSIPIVICANKVDLRA 511
R+ + Y A +++Y V + +SF+S +++E + + T+ SIP ++ NK+D+
Sbjct: 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM-- 139
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSS 542
AQ + V + G LA ++G +F E S+
Sbjct: 140 -AQYRQVT---KAEGVALAGRFGCLFFEVSA 166
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK++ G++ VGKS F N D + I VD+ V L ++D
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 450 GQERFRSMTKNY-FRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKV 507
Q +++ + D ++++ VT+ RSF+ V + + + +P+++ NK
Sbjct: 70 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 129
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSS 542
DL A+++ V E G LA +ETS+
Sbjct: 130 DL---ARSREVSL---EEGRHLAGTLSCKHIETSA 158
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
+I+ G GK+ + + + E ++ + T G F +K+ V + L +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASE-DISHITPTQG--FNIKS--VQSQGFKLNVWDIGGQRK 60
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICANKVDLRAD 512
R ++YF D ++ + D + + F + + E + S +P++I ANK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 513 AQA 515
A A
Sbjct: 121 APA 123
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGF-----DIQPTDSDAIFADLDHDGDGKVS 56
+D Q++E+F+ DK +G I EE + + GF D+ T++ A+ A D D DGK+
Sbjct: 39 TDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIG 98
Query: 57 LEDFA 61
++FA
Sbjct: 99 ADEFA 103
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
L P G + K++ G GK+ +Y+FS ++ T+G + + I N
Sbjct: 13 GLVPRGSQEH--KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVIN----NT 65
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTN 476
+WD GQE RS Y+ + V+++ D T+
Sbjct: 66 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 100
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
L P G + K++ G GK+ +Y+FS ++ T+G + + I N
Sbjct: 13 GLVPRG-SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVIN----NT 66
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTN 476
+WD GQE RS Y+ + V+++ D T+
Sbjct: 67 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 101
>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of
Bordetella Pertussis In Presence Of C-Terminal
Calmodulin And 1mm Calcium Chloride
pdb|1YRT|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of
Bordetella Pertussis In Presence Of C-Terminal
Calmodulin
Length = 74
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 7 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 66
Query: 60 FA 61
F
Sbjct: 67 FV 68
>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant
Length = 94
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 27 SEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 86
Query: 60 FA 61
F
Sbjct: 87 FV 88
>pdb|1ZOT|B Chain B, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp
Length = 69
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 3 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 62
Query: 60 FA 61
F
Sbjct: 63 FV 64
>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin
Carboxy-Terminal Domain
pdb|1CMG|A Chain A, Nmr Solution Structure Of Calcium-Loaded Calmodulin
Carboxy- Terminal Domain
Length = 73
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 6 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 65
Query: 60 FA 61
F
Sbjct: 66 FV 67
>pdb|2COL|B Chain B, Crystal Structure Analysis Of CyaaC-Cam With
Pyrophosphate
Length = 67
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 3 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 62
Query: 60 FA 61
F
Sbjct: 63 FV 64
>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin
C-Domain E104dE140D MUTANT
Length = 72
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I + R + T + TD D + + D DGDG+V+ ED
Sbjct: 5 SEEEIREAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYED 64
Query: 60 FA 61
F
Sbjct: 65 FV 66
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV---EEVTEN 496
+++ ++D +GQ R+R++ ++Y++ ++ + D ++ K ++ + ++
Sbjct: 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR 125
Query: 497 SIPIVICANKVDLR 510
IPI+ ANK+DLR
Sbjct: 126 RIPILFFANKMDLR 139
>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From
Calmodulin To 1.7 A Resolution
pdb|2LQP|A Chain A, Nmr Solution Structure Of The Ca2+-Calmodulin C-Terminal
Domain In A Complex With A Peptide (Nscate) From The
L-Type Voltage-Gated Calcium Channel Alpha1c Subunit
Length = 71
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 4 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 63
Query: 60 FA 61
F
Sbjct: 64 FV 65
>pdb|1F71|A Chain A, Refined Solution Structure Of Calmodulin C-Terminal
Domain
pdb|1J7P|A Chain A, Solution Structure Of Calcium Calmodulin C-Terminal
Domain
pdb|2K3S|B Chain B, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
pdb|2KUH|A Chain A, Halothane Binds To Druggable Sites In
Calcium-Calmodulin: Solution Structure Of Halothane-Cam
C-Terminal Domain
pdb|2LLQ|A Chain A, Solution Nmr-Derived Structure Of Calmodulin C-Lobe
Bound With Er Alpha Peptide
Length = 67
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFA 61
++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+F
Sbjct: 3 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 61
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141
Query: 60 FA 61
F
Sbjct: 142 FV 143
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 66 -FPEFLTMMARKMK 78
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 373 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 432
Query: 60 FA 61
F
Sbjct: 433 FV 434
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DGDG +
Sbjct: 303 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID------ 356
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 357 -FPEFLIMMARKMK 369
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 10 FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
F DK G+G I P+E ++ C F ++ + + D+D D DG++ +F
Sbjct: 105 FTYFDKDGSGYITPDELQQACEEFGVEDVRIEELXRDVDQDNDGRIDYNEF 155
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 348 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 407
Query: 60 FA 61
F
Sbjct: 408 FV 409
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 278 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 331
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 332 -FPEFLTMMARKMK 344
>pdb|2K2A|A Chain A, Solution Structure Of The Apo C Terminal Domain Of
Lethoceru C Isoform F1
Length = 70
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDF 60
+L E F+ DK+G G I + RE+ D + D DA+ ++D DG G V E+F
Sbjct: 4 ELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEF 61
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 348 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 407
Query: 60 FA 61
F
Sbjct: 408 FV 409
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 278 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 331
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 332 -FPEFLTMMARKMK 344
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 382 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 441
Query: 60 FA 61
F
Sbjct: 442 FV 443
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 365
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 366 -FPEFLTMMARKMK 378
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 382 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 441
Query: 60 FA 61
F
Sbjct: 442 FV 443
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 365
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 366 -FPEFLTMMARKMK 378
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
+I+ G GK+ + + + E ++ + T G F +K+ V + L +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASE-DISHITPTQG--FNIKS--VQSQGFKLNVWDIGGLRK 60
Query: 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICANKVDLRAD 512
R ++YF D ++ + D + + F + + E + S +P++I ANK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 513 AQA 515
A A
Sbjct: 121 APA 123
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 382 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 441
Query: 60 FA 61
F
Sbjct: 442 FV 443
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 365
Query: 63 GFREFLNSDARRLK 76
F EFL AR +K
Sbjct: 366 -FPEFLTMMARWMK 378
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 382 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 441
Query: 60 FA 61
F
Sbjct: 442 FV 443
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DGDG +
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID------ 365
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 366 -FPEFLTMMARKMK 378
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ G GK+ +Y+FS ++ T+G + + I N +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 454 FRSMTKNYFRRADGVMLLYDVTN 476
RS Y+ + V+++ D T+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTD 95
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L+E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 78 SEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEE 137
Query: 60 FA 61
F
Sbjct: 138 FV 139
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 8 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 61
Query: 63 GFREFLNSDARRLK 76
F EFLN AR++K
Sbjct: 62 -FPEFLNLMARKMK 74
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 382 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 441
Query: 60 FA 61
F
Sbjct: 442 FV 443
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 365
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 366 -FPEFLTMMARKMK 378
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 345 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 404
Query: 60 FA 61
F
Sbjct: 405 FV 406
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 275 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 328
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 329 -FPEFLTMMARKMK 341
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L+E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 81 SEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFLN AR++K
Sbjct: 65 -FPEFLNLMARKMK 77
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 383 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 442
Query: 60 FA 61
F
Sbjct: 443 FV 444
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 313 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 366
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 367 -FPEFLTMMARKMK 379
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 85 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 144
Query: 60 F 60
F
Sbjct: 145 F 145
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 15 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 68
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 69 -FPEFLTMMARKMK 81
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 381 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 440
Query: 60 FA 61
F
Sbjct: 441 FV 442
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DGDG +
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID------ 364
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 365 -FPEFLTMMARKMK 377
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ G GK+ +Y+FS ++ T+G + + I N +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 454 FRSMTKNYFRRADGVMLLYDVTN 476
RS Y+ + V+++ D T+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTD 95
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFS-KEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDT 448
++ +I+ G GK+ +YR EV K T+G F ++T+ +N+ L +WD
Sbjct: 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTK--PTIG--FNVETLSY--KNLKLNVWDL 69
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNE 477
GQ R + Y+ V+ + D T++
Sbjct: 70 GGQTSIRPYWRCYYADTAAVIFVVDSTDK 98
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 79 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 138
Query: 60 F 60
F
Sbjct: 139 F 139
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 62
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 63 -FPEFLTMMARKMK 75
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 381 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 440
Query: 60 FA 61
F
Sbjct: 441 FV 442
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DGDG +
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID------ 364
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 365 -FPEFLTMMARKMK 377
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 381 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 440
Query: 60 FA 61
F
Sbjct: 441 FV 442
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DGDG +
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID------ 364
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 365 -FPEFLTMMARKMK 377
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141
Query: 60 F 60
F
Sbjct: 142 F 142
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 66 -FPEFLTMMARKMK 78
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDQMIREADIDGDGQVNYEE 141
Query: 60 F 60
F
Sbjct: 142 F 142
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 66 -FPEFLTMMARKMK 78
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141
Query: 60 F 60
F
Sbjct: 142 F 142
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 66 -FPEFLTMMARKMK 78
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 83 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 142
Query: 60 F 60
F
Sbjct: 143 F 143
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 13 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 66
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 67 -FPEFLTMMARKMK 79
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 77 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 136
Query: 60 F 60
F
Sbjct: 137 F 137
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 7 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 60
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 61 -FPEFLTMMARKMK 73
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S+ L+ G + K+VF G GK+ ++ K+ L + TL + TI
Sbjct: 8 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHML-KDDRLGQHVPTLHPTSEELTIA-- 64
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVT-NERSFNSVKNWVEAVEEVTEN 496
+ +D G + R + KNY +G++ L D +ER S + + + T
Sbjct: 65 --GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA 122
Query: 497 SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKS 544
++PI+I NK+D R +A ++ E+L + +G ++ +T+ K
Sbjct: 123 NVPILILGNKID-RPEAISE----------ERLREMFG-LYGQTTGKG 158
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 78 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 137
Query: 60 FA 61
F
Sbjct: 138 FV 139
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 8 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 61
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 62 -FPEFLTMMARKMK 74
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 79 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 138
Query: 60 FA 61
F
Sbjct: 139 FV 140
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 62
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 63 -FPEFLTMMARKMK 75
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L+E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 81 SEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFLN AR++K
Sbjct: 65 -FPEFLNLMARKMK 77
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 79 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 138
Query: 60 FA 61
F
Sbjct: 139 FV 140
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 62
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 63 -FPEFLTMMARKMK 75
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141
Query: 60 F 60
F
Sbjct: 142 F 142
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 66 -FPEFLTMMARKMK 78
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 87 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 146
Query: 60 F 60
F
Sbjct: 147 F 147
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 17 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 70
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 71 -FPEFLTMMARKMK 83
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAY 62
++ E FK D+ G G I P E R + + TD D + + D DGDG ++ E+F +
Sbjct: 84 EMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVW 143
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin
Bound To The Iq Motif Of Nav1.2
Length = 73
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L E FK D+ G G I E R + T + TD D + + D DGDG ++ E+
Sbjct: 6 SEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEE 65
Query: 60 FA 61
F
Sbjct: 66 FV 67
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 80 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 139
Query: 60 FA 61
F
Sbjct: 140 FV 141
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 10 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 63
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 64 -FPEFLTMMARKMK 76
>pdb|2JNF|A Chain A, Solution Structure Of Fly Troponin C, Isoform F1
Length = 158
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDF 60
+L E F+ DK+G G I + RE+ D + D DA+ ++D DG G V E+F
Sbjct: 92 ELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEF 149
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DGDG +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|1NYA|A Chain A, Nmr Solution Structure Of Calerythrin, An Ef-hand Calcium-
Binding Protein
Length = 176
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 13 CDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67
CDK GQI +EF T + ++ F +D +G+G++SL++ R+F
Sbjct: 111 CDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDF 165
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK++ G++ VGKS F + D + I VD+ V L ++D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 453 RFRSMTKNY-FRRADGVMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLR 510
+++ + D ++++ VT+ RSF+ V + + + +P+++ NK DL
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 121
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSS 542
A+++ V E G LA +ETS+
Sbjct: 122 --ARSREVSL---EEGRHLAGTLSCKHIETSA 148
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T TD D + + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEMIREADIDGDGQVNYEE 141
Query: 60 F 60
F
Sbjct: 142 F 142
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 66 -FPEFLTMMARKMK 78
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T TD D + + D DGDG+V+ E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEMIREADIDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S+ L+ G + K+VF G GK+ ++ K+ L + TL + TI
Sbjct: 11 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHML-KDDRLGQHVPTLHPTSEELTIA-- 67
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVT-NERSFNSVKNWVEAVEEVTEN 496
+ +D G + R + KNY +G++ L D +ER S + + + T
Sbjct: 68 --GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA 125
Query: 497 SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKS 544
++PI+I NK+D R +A ++ E+L + +G ++ +T+ K
Sbjct: 126 NVPILILGNKID-RPEAISE----------ERLREMFG-LYGQTTGKG 161
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 79 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 138
Query: 60 FA 61
F
Sbjct: 139 FV 140
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|2K7C|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 C-Domain
pdb|2K7D|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain
Length = 72
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL---CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+L + F+ D G G+I E RE G + D + I D+D +GDG+V E+F
Sbjct: 8 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 67
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 22/197 (11%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S+ L+ G + K+VF G GK+ ++ K+ L + TL + TI
Sbjct: 2 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHML-KDDRLGQHVPTLHPTSEELTIA-- 58
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVT-NERSFNSVKNWVEAVEEVTEN 496
+ +D G + R + KNY +G++ L D +ER S + + + T
Sbjct: 59 --GMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA 116
Query: 497 SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALS 556
++PI+I NK+D R +A ++ E+L + +G ++ +T+ K G L L A
Sbjct: 117 NVPILILGNKID-RPEAISE----------ERLREMFG-LYGQTTGK-GSVSLKELNA-- 161
Query: 557 RHVYVFIPCVYLKDLPY 573
R + VF+ C LK Y
Sbjct: 162 RPLEVFM-CSVLKRQGY 177
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141
Query: 60 FA 61
F
Sbjct: 142 FV 143
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 66 -FPEFLTMMARKMK 78
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141
Query: 60 FA 61
F
Sbjct: 142 FV 143
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 66 -FPEFLTMMARKMK 78
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 81 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 140
Query: 60 FA 61
F
Sbjct: 141 FV 142
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 81 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL---CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+L + F+ D G G+I E RE G + D + I D+D +GDG+V E+F
Sbjct: 103 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 162
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L E FK D+ G G I E R + T + TD D + + D DGDG ++ E+
Sbjct: 81 SEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEE 140
Query: 60 FA 61
F
Sbjct: 141 FV 142
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL+ AR++K
Sbjct: 65 -FPEFLSLMARKMK 77
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L E FK D+ G G I E R + T + TD D + + D DGDG ++ E+
Sbjct: 81 SEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEE 140
Query: 60 FA 61
F
Sbjct: 141 FV 142
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL+ AR++K
Sbjct: 65 -FPEFLSLMARKMK 77
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRESDIDGDGQVNYEE 141
Query: 60 FA 61
F
Sbjct: 142 FV 143
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 66 -FPEFLTMMARKMK 78
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
K++ G GK+ +Y+F ++ T+G + + + +N +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSNVE----EIVVKNTHFLMWDIGGQES 72
Query: 454 FRSMTKNYFRRADGVMLLYD 473
RS Y+ + ++L+ D
Sbjct: 73 LRSSWNTYYSNTEFIILVVD 92
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL---CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+L + F+ D G G+I E RE G + D + I D+D +GDG+V E+F
Sbjct: 89 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 148
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL---CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+L + F+ D G G+I E RE G + D + I D+D +GDG+V E+F
Sbjct: 89 ELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 148
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + + + DGDG+V+ E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREANIDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAYG 63
+ +F+T D+ +G I E ++ +GF + +D D + D G G+++ +DF G
Sbjct: 96 QNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 154
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAYG 63
+ +F+T D+ +G I E ++ +GF + +D D + D G G+++ +DF G
Sbjct: 77 QNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 135
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAYG 63
+ +F+T D+ +G I E ++ +GF + +D D + D G G+++ +DF G
Sbjct: 73 QNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 131
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAYG 63
+ +F+T D+ +G I E ++ +GF + +D D + D G G+++ +DF G
Sbjct: 74 QNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 132
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAYG 63
+ +F+T D+ +G I E ++ +GF + +D D + D G G+++ +DF G
Sbjct: 95 QNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 153
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD-----IQPTDSDAIFADLDHDGDGKVS 56
S QL+E+F+ D +G I +E + F+ + +++ A DHDGDGK+
Sbjct: 39 SSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIG 98
Query: 57 LEDF 60
E+F
Sbjct: 99 AEEF 102
>pdb|2RO9|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 C-Terminal Domain
Length = 69
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L+E F+ DK G I E R + T + TD D + + D DGDG+++ E+
Sbjct: 2 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 61
Query: 60 FA 61
F
Sbjct: 62 FV 63
>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean
Calmodulin Isoform 4 Fused With The Calmodulin-Binding
Domain Of Ntmkp1
Length = 92
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFA 61
+L+E FK DK G I E R + + TD + + + D DGDG+V+ E+F
Sbjct: 10 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 68
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
++ E F+ DK G G I E R + T + TD D + + + DGDG+V+ E+F
Sbjct: 79 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREANIDGDGQVNYEEF 136
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 7 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 60
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 61 -FPEFLTMMARKMK 73
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + D DGDG+V+ E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDQXIREADIDGDGQVNYEE 141
Query: 60 F 60
F
Sbjct: 142 F 142
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + D DGDG+V+ E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREADIDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 C-Terminal Domain
Length = 70
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFA 61
+L+E FK DK G I E R + + TD + + + D DGDG+V+ E+F
Sbjct: 5 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 63
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ DK G G I E R + T + TD D + D DGDG+V+ E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREADIDGDGQVNYEE 140
Query: 60 F 60
F
Sbjct: 141 F 141
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
++ E FK D+ G G I +E P + + I LD DGDG+V E+F
Sbjct: 37 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEF 94
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 7 EELFKTCDKKGTGQIGPEEFRE-LCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
E +FK D G G+I E E L T I P + + A++D DGDG +S ++F
Sbjct: 12 ERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDGFISFQEF 66
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 42/182 (23%)
Query: 395 IVFAGDAAVGKSCFIYRFS-KEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG--- 450
I+FAG + VGKS IYR + K+V + G GV K I ++ +N ++ D G
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKKV---RRGKRPGV--TRKIIEIEWKN--HKIIDXPGFGF 56
Query: 451 --------QERFRSMTKNYF----RRADGVMLLYDVTNERSFNSVKNW---------VEA 489
QER + ++ + D +L+ D + + +K W VE
Sbjct: 57 XXGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVD--GKAAPEIIKRWEKRGEIPIDVEF 114
Query: 490 VEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA---QQYGAIFMETSSKSGD 546
+ + E IP ++ NK+D + K V+ + + EK + +F+ S+K GD
Sbjct: 115 YQFLRELDIPTIVAVNKLD-----KIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGD 169
Query: 547 NI 548
NI
Sbjct: 170 NI 171
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 10 FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66
F DK G+G I +E ++ C F + D + ++D D DG++ +FA R+
Sbjct: 88 FSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRK 144
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L+E F+ DK G I E R + T + TD D + + D DGDG+++ E+
Sbjct: 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141
Query: 60 FA 61
F
Sbjct: 142 FV 143
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFLN AR++K
Sbjct: 66 -FPEFLNLMARKMK 78
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT--GFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
++ E F+ DK G G + E R + T G + + D + D DGDG+V+ E+F
Sbjct: 84 EIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYEEFV 142
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I E + PT+++ + +++D DG+G V
Sbjct: 11 EFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVD------ 64
Query: 63 GFREFLNSDARRLKSNVN 80
F EFL AR++K N
Sbjct: 65 -FPEFLGMMARKMKDTDN 81
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 393 FKIVFAGDAAVGKSC---FIYRFSKEVFLNKLGS-------TLGVDFQMKTI-RVDERNV 441
FKIV+ G GK+ +IY E ++ S TL DF I V
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER---SFNSVKNWVEAVEE--VTEN 496
L+ GQ + + K R DG++ + D R + S++N E + E +T +
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134
Query: 497 SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALS 556
+PIVI NK DL + V+ + G+ +E + G + + L +S
Sbjct: 135 DVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPV-------LEAVATEGKGVFETLKEVS 187
Query: 557 RHV 559
R V
Sbjct: 188 RLV 190
>pdb|2CCM|A Chain A, X-Ray Structure Of Calexcitin From Loligo Pealeii At 1.8a
pdb|2CCM|B Chain B, X-Ray Structure Of Calexcitin From Loligo Pealeii At 1.8a
Length = 191
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%)
Query: 9 LFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68
+F D G I E+ + + I +D DA F L G V+ E FA + E+
Sbjct: 114 MFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWTEYF 173
Query: 69 NSDARRLKSNVNAGAM 84
S+ R K N G +
Sbjct: 174 VSNDRGAKGNHLFGTL 189
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L E FK DK G G I E + + T + TD+ D + ++ DG G+++++
Sbjct: 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV-SDGSGEINIQQ 140
Query: 60 FAYGFREFLNSDARR 74
FA + ++ RR
Sbjct: 141 FAALLSKGSSTGTRR 155
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFA 61
+L+E FK DK G I E R + + TD + + + D DGDG+V+ E+F
Sbjct: 84 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 142
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFA 61
+ +E F DK G G I EE + D PT+ + + +++D DG+G +
Sbjct: 10 VDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIE----- 64
Query: 62 YGFREFLNSDARRLK 76
F EFL+ A+++K
Sbjct: 65 --FDEFLSLMAKKVK 77
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGF-----DIQPTDSDAIFADLDHDGDGKV 55
MS ++++FK D +G I EE + + F D+ ++ A D DGDGK+
Sbjct: 39 MSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKI 98
Query: 56 SLEDF 60
+++F
Sbjct: 99 GIDEF 103
>pdb|1RTP|1 Chain 1, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|2 Chain 2, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|3 Chain 3, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RWY|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|B Chain B, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|C Chain C, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|2JWW|A Chain A, Calcium-Free Rat Alpha-Parvalbumin
Length = 109
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGF-----DIQPTDSDAIFADLDHDGDGKVSLEDF 60
++++F DK +G I +E + GF D+ ++ + A D DGDGK+ +E+F
Sbjct: 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEF 102
Query: 61 A 61
+
Sbjct: 103 S 103
>pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Without The
N-Terminal Domain
Length = 73
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGF-----DIQPTDSDAIFADLDHDGDGKVSLEDF 60
++++F DK +G I +E + GF D+ ++ + A D DGDGK+ +E+F
Sbjct: 7 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEF 66
Query: 61 A 61
+
Sbjct: 67 S 67
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 9 LFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAI--FADLDHDGDGKVSLEDFA 61
+F+ DK G++ +EFRE+ F T D + F ++D DG+G+++ ++F
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFT 60
>pdb|2SAS|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Amphioxus Refined At 2.4 Angstroms Resolution
Length = 185
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 9 LFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLE 58
LFK D G G + EEF+ C F +Q D A++ ++ DG GKV+ +
Sbjct: 110 LFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVY-NVITDG-GKVTFD 157
>pdb|3F45|A Chain A, Structure Of The R75a Mutant Of Rat Alpha-Parvalbumin
Length = 109
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGF-----DIQPTDSDAIFADLDHDGDGKVSLEDF 60
++++F DK +G I +E + GF D+ ++ + A D DGDGK+ +E+F
Sbjct: 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDAADLSAKETKTLMAAGDKDGDGKIGVEEF 102
Query: 61 A 61
+
Sbjct: 103 S 103
>pdb|4ICB|A Chain A, Proline Cis-Trans Isomers In Calbindin D9k Observed By
X- Ray Crystallography
Length = 76
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 25 EFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
EF L G P+ D +F +LD +GDG+VS E+F
Sbjct: 36 EFPSLLKG----PSTLDELFEELDKNGDGEVSFEEF 67
>pdb|1IG5|A Chain A, Bovine Calbindin D9k Binding Mg2+
pdb|1IGV|A Chain A, Bovine Calbindin D9k Binding Mn2+
pdb|3ICB|A Chain A, The Refined Structure Of Vitamin D-Dependent Calcium-
Binding Protein From Bovine Intestine. Molecular
Details, Ion Binding, And Implications For The
Structure Of Other Calcium-Binding Proteins
Length = 75
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 25 EFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
EF L G P+ D +F +LD +GDG+VS E+F
Sbjct: 35 EFPSLLKG----PSTLDELFEELDKNGDGEVSFEEF 66
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP---TDSDAIFADLDHDGDGKVSL 57
+ DLQ+ F+ D+ G G I +E R G QP + DA+ + D D DG+V+
Sbjct: 5 LEDLQVA--FRAFDQDGDGHITVDELRRAMAGLG-QPLPQEELDAMIREADVDQDGRVNY 61
Query: 58 EDFA 61
E+FA
Sbjct: 62 EEFA 65
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
N60d Calmodulin Refined With Paramagnetism Based
Strategy
Length = 79
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DGDG +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 23/183 (12%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGS----------TLGVDF-QMKTIRVDERNV 441
FKIV+ G GK+ + +V + G TL DF + V
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEXVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER---SFNSVKNWVEAVEE--VTEN 496
L+ GQ + + K R DG++ + D R + S +N E + E +T +
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGLTLD 134
Query: 497 SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALS 556
+PIVI NK DL + V+ + G+ +E + G + + L +S
Sbjct: 135 DVPIVIQVNKRDLPDALPVEXVRAVVDPEGKFPV-------LEAVATEGKGVFETLKEVS 187
Query: 557 RHV 559
R V
Sbjct: 188 RLV 190
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L+E F+ DK G I E R + T + TD D + + D DGDG+++ ++
Sbjct: 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDE 141
Query: 60 FA 61
F
Sbjct: 142 FV 143
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 65
Query: 63 GFREFLNSDARRLK 76
F EFLN AR++K
Sbjct: 66 -FPEFLNLMARKMK 78
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double
Mutant Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLYDKDGDGTITTKELGTVMRSLGLNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR +K
Sbjct: 65 -FPEFLTMMARIMK 77
>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin (Oncomodulin)
Refined With A Paramagnetism Based Strategy
Length = 109
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD-----IQPTDSDAIFADLDHDGDGKV 55
MS Q++++F+ D +G + EE + F+ + +++ ++ A D+DGDGK+
Sbjct: 39 MSANQVKDVFRFIDNDQSGYLDEEELKFFLQKFESGARELTESETKSLMAAADNDGDGKI 98
Query: 56 SLEDF 60
E+F
Sbjct: 99 GAEEF 103
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L E FK DK G G I E + + T + TD+ D + ++ DG G+++++
Sbjct: 81 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV-SDGSGEINIQQ 139
Query: 60 FA 61
FA
Sbjct: 140 FA 141
>pdb|1BOD|A Chain A, The Solution Structures Of Mutant Calbindin D9k's, As
Determined By Nmr, Show That The Calcium Binding Site
Can Adopt Different Folds
Length = 74
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 12/64 (18%)
Query: 5 QLEELFKTCDKKGTGQIGPE--------EFRELCTGFDIQPTDSDAIFADLDHDGDGKVS 56
+L+ +F+ DK+G GQ+ E EF L G + D +F +LD +GDG+VS
Sbjct: 6 ELKGIFEKYDKEGDGQLSKEELKLLLQTEFPSLLKGM----STLDELFEELDKNGDGEVS 61
Query: 57 LEDF 60
E+F
Sbjct: 62 FEEF 65
>pdb|1S3P|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin S55d/e59d
Mutant
Length = 109
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGF-----DIQPTDSDAIFADLDHDGDGKVSLEDF 60
++++F DK G I +E + GF D+ ++ + A D DGDGK+ +E+F
Sbjct: 43 VKKVFHILDKDKDGFIDEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEF 102
Query: 61 A 61
+
Sbjct: 103 S 103
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L E FK DK G G I E + + T + TD+ D + ++ DG G+++++
Sbjct: 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV-SDGSGEINIKQ 140
Query: 60 FA 61
FA
Sbjct: 141 FA 142
>pdb|1CB1|A Chain A, Three-Dimensional Solution Structure Of Ca2+-Loaded
Porcine Calbindin D9k Determined By Nuclear Magnetic
Resonance Spectroscopy
Length = 78
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 25 EFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
EF L G P D +F +LD +GDG+VS E+F
Sbjct: 38 EFPSLLKG----PRTLDDLFQELDKNGDGEVSFEEF 69
>pdb|3KPX|A Chain A, Crystal Structure Analysis Of Photoprotein Clytin
Length = 198
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFA--- 61
E +F DK G+G I +E++ I P+D DA F D D GK+ +++
Sbjct: 119 EAVFDIFDKDGSGSISLDEWKTYGGISGICPSDEDAEKTFKHCDLDNSGKLDVDEMTRQH 178
Query: 62 YGFREFLNSDARRLKSN 78
GF L+ +A L N
Sbjct: 179 LGFWYTLDPNADGLYGN 195
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFA 61
+ +E F DK G G I EE + D PT+ + + +++D DG+G +
Sbjct: 10 VDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIE----- 64
Query: 62 YGFREFLNSDARRLK 76
F EFL+ A+++K
Sbjct: 65 --FDEFLSLMAKKVK 77
>pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Mucosa Of Pig
pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 211 ILMRKMEHETQELQAHLNLFQKVNNVLKEKKI--EKQQDPTSDHNFSFEN 258
+ MR +E + +E + +LN F K N + +E + KQ+ T D N++ N
Sbjct: 29 VFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNN 78
>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 N-Terminal Domain
Length = 79
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFLN AR++K
Sbjct: 65 -FPEFLNLMARKMK 77
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAI-----FADLDHDGDGKVSLEDF 60
L+ +FK+ D G G+I EF + Q D I + +D DGDGK++ E+
Sbjct: 38 LQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEV 97
Query: 61 AYGFRE 66
F++
Sbjct: 98 TSFFKK 103
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAI-----FADLDHDGDGKVSLEDF 60
L+ +FK D G G+I EF + Q + + + +D DGDGK++ E+
Sbjct: 38 LQLIFKAIDIDGNGEIDLAEFTKFAAAVKEQDLSDEKVGLKILYKLMDADGDGKLTKEEV 97
Query: 61 AYGFREF 67
F++F
Sbjct: 98 TTFFKKF 104
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA----IFADLDHDGDGKVSLEDF 60
E LFK D G G + EE + + +P ++ IF +D DG+G++ L +F
Sbjct: 3 EALFKQLDANGDGSVSYEEVKAFVSS--KRPIKNEQLLQLIFKAIDIDGNGEIDLAEF 58
>pdb|2LQC|A Chain A, Nmr Solution Structure Of A Ca2+-Calmodulin With A
Binding Motif (Nscate) Peptide From The N-Terminal
Cytoplasmic Domain Of The L-Type Voltage-Cated Calcium
Channel Alpha1c Subunit
Length = 77
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAI-----FADLDHDGDGKVSLEDF 60
L+ +FK+ D G G+I EF + Q D I + +D DGDGK++ E+
Sbjct: 38 LQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEV 97
Query: 61 AYGFRE 66
F++
Sbjct: 98 TSFFKK 103
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
++ E F D G+G I +E + GF+ + + + AD+D DG G + E+F
Sbjct: 9 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEF 66
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ ++ E F+ K G G I + R + T + TD D + + DGDG+V+ E
Sbjct: 382 SEEEIREAFRVFGKDGNGYISAAQLRHVMTNLGEKLTDEEVDEMIREAGIDGDGQVNYEQ 441
Query: 60 FA 61
F
Sbjct: 442 FV 443
>pdb|3FS7|A Chain A, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|B Chain B, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|C Chain C, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|D Chain D, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|E Chain E, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|F Chain F, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|G Chain G, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|H Chain H, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
Length = 109
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFD-----IQPTDSDAIFADLDHDGDGKVSLED 59
Q++++F D+ +G I EE + F + ++ A A D DGDGK+ +E+
Sbjct: 43 QIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEE 102
Query: 60 F 60
F
Sbjct: 103 F 103
>pdb|2LVV|A Chain A, Nmr Structure Of Tb24
Length = 226
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCT-----GFDIQPTDSDAIFADLDHDGDGKVSLE 58
+L +F T DK G+ + +EF+E G DI TD+ +F ++D +G G V+ +
Sbjct: 133 FELTVMFDTMDKDGSLLLELQEFKEALPKLKEWGVDI--TDATTVFNEIDTNGSGVVTFD 190
Query: 59 DFA 61
+F+
Sbjct: 191 EFS 193
>pdb|3UCT|A Chain A, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin
In The Presence Of Zn2+
pdb|3UCT|B Chain B, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin
In The Presence Of Zn2+
pdb|3UCW|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|B Chain B, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|C Chain C, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|D Chain D, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCY|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
In The Presence Of Zn2+
Length = 79
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|2KQY|A Chain A, Solution Structure Of Avian Thymic Hormone
Length = 108
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFD-----IQPTDSDAIFADLDHDGDGKVSLED 59
Q++++F D+ +G I EE + F + ++ A A D DGDGK+ +E+
Sbjct: 42 QIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEE 101
Query: 60 F 60
F
Sbjct: 102 F 102
>pdb|1DZJ|A Chain A, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZJ|B Chain B, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZK|A Chain A, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZK|B Chain B, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZM|A Chain A, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1DZM|B Chain B, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1DZP|B Chain B, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1E00|A Chain A, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl- 7-Octen-2-Ol
pdb|1E00|B Chain B, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl- 7-Octen-2-Ol
pdb|1E02|A Chain A, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1E02|B Chain B, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1E06|A Chain A, Porcine Odorant Binding Protein Complexed With 5-Methyl-2-
(1-Methylethyl)phenol
pdb|1E06|B Chain B, Porcine Odorant Binding Protein Complexed With 5-Methyl-2-
(1-Methylethyl)phenol
pdb|1HQP|A Chain A, Crystal Structure Of A Truncated Form Of Porcine Odorant-
Binding Protein
Length = 157
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 211 ILMRKMEHETQELQAHLNLFQKVNNVLKEKKI--EKQQDPTSDHNFSFEN 258
+ MR +E + +E + +LN F K N + +E + KQ+ T D N++ N
Sbjct: 37 VFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNN 86
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 475 TNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG 534
NE ++ + W V+++ EN IV+C N R + CI +K +G
Sbjct: 134 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRT------LGCISASTTKKCTSNFG 187
Query: 535 AIFMETSSKSGDNILDAL 552
F SK + L+AL
Sbjct: 188 P-FAPQFSKVPYDDLEAL 204
>pdb|2LLO|A Chain A, Solution Nmr-Derived Structure Of Calmodulin N-Lobe
Bound With Er Alpha Peptide
Length = 80
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|3IFK|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
pdb|3IFK|B Chain B, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
Length = 90
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRLK 76
F EFL AR++K
Sbjct: 65 -FPEFLTMMARKMK 77
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLED 59
S+ +L ELF+ D+ G I EE E+ +G + + +++ D D + DG++ ++
Sbjct: 91 SEEELAELFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDE 150
Query: 60 F 60
F
Sbjct: 151 F 151
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLED 59
S+ +L +LF+ DK G I EE + + TG I D + + D D + DG++ ++
Sbjct: 3 SEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDE 62
Query: 60 F 60
F
Sbjct: 63 F 63
>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 142
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT--GFDIQPTDSDAIFADLDHDGDGKVSLEDFAY 62
+ +E F+ D + TG I E + + G ++P + +F + D G+GK+
Sbjct: 7 EFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQ------ 60
Query: 63 GFREFLNSDARRLKSNVN 80
F EFL+ RR+K +
Sbjct: 61 -FPEFLSMMGRRMKQTTS 77
>pdb|1XVJ|A Chain A, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
pdb|1XVJ|B Chain B, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
Length = 109
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGF-----DIQPTDSDAIFADLDHDGDGKVSLEDF 60
++++F DK +G I +E + GF D+ ++ + A D DG GK+ +E+F
Sbjct: 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGSGKIEVEEF 102
Query: 61 A 61
+
Sbjct: 103 S 103
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLED 59
S+ +L +LF+ DK G I EE + + TG I D + + D D + DG++ ++
Sbjct: 5 SEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDE 64
Query: 60 F 60
F
Sbjct: 65 F 65
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLED 59
S+ +LE+ F+ DK G I EE E+ TG + D + + D D + DG++ ++
Sbjct: 94 SEEELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDE 153
Query: 60 F 60
F
Sbjct: 154 F 154
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 8 ELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA----IFADLDHDGDGKVSLEDFA 61
E FKT D++G G I E R + T + +D D DL D +G V EDF
Sbjct: 86 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFV 143
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDF 60
+ +E F DK G G I EE + D PT+ + + +++D DG+G + ++F
Sbjct: 10 VDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEF 68
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 8 ELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA----IFADLDHDGDGKVSLEDFA 61
E FKT D++G G I E R + T + +D D DL D +G V EDF
Sbjct: 88 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFV 145
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 8 ELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA----IFADLDHDGDGKVSLEDFA 61
E FKT D++G G I E R + T + +D D DL D +G V EDF
Sbjct: 85 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFV 142
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLED 59
S+ +L +LF+ DK G I EE + + TG I D + + D D + DG++ ++
Sbjct: 93 SEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDE 152
Query: 60 F 60
F
Sbjct: 153 F 153
>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The
V-Type Atpase Of Saccharomyces Cerevisiae
Length = 480
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 111 NVHKFLNTSGKKLADLYHELRTSSN--CPEIVTHFEGALSSLL-------DDVKRLHEDN 161
N H +GK L L H L TS N C + V + ++ LL D VK ED
Sbjct: 67 NAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSV---QNLIAELLSSDKYGDDTVKFFQEDP 123
Query: 162 EKLEEMFN 169
++LE++F+
Sbjct: 124 KQLEQLFD 131
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 8 ELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA----IFADLDHDGDGKVSLEDFA 61
E FKT D++G G I E R + T + +D D DL D +G V EDF
Sbjct: 88 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFV 145
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 8 ELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA----IFADLDHDGDGKVSLEDFA 61
E FKT D++G G I E R + T + +D D DL D +G V EDF
Sbjct: 88 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFV 145
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 8 ELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA----IFADLDHDGDGKVSLEDFA 61
E FKT D++G G I E R + T + +D D DL D +G V EDF
Sbjct: 85 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFV 142
>pdb|1RJV|A Chain A, Solution Structure Of Human Alpha-Parvalbumin Refined With
A Paramagnetism-Based Strategy
pdb|1RK9|A Chain A, Solution Structure Of Human Alpha-Parvalbumin (Minimized
Average Structure)
Length = 110
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGF-----DIQPTDSDAIFADLDHDGDGKVSLEDF 60
++++F DK +G I +E + GF D+ ++ + A D DGDGK+ +++F
Sbjct: 44 VKKVFHMLDKDKSGFIEEDELGFILKGFSPDARDLSAKETKMLMAAGDKDGDGKIGVDEF 103
Query: 61 A 61
+
Sbjct: 104 S 104
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+L +LF+ DK G I EE + + TG I D + + D D + DG++ ++F
Sbjct: 96 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD---AIFADLDHDGDGKVSL 57
+S +LE F+ D +G+I E L T F + DS+ ++ +++D + DG+V
Sbjct: 415 LSRERLERAFRXFDSDNSGKISSTE---LATIFGVSDVDSETWKSVLSEVDKNNDGEVDF 471
Query: 58 EDF 60
++F
Sbjct: 472 DEF 474
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD---AIFADLDHDGDGKVSL 57
+S +LE F+ D +G+I E L T F + DS+ ++ +++D + DG+V
Sbjct: 415 LSRERLERAFRMFDSDNSGKISSTE---LATIFGVSDVDSETWKSVLSEVDKNNDGEVDF 471
Query: 58 EDF 60
++F
Sbjct: 472 DEF 474
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I
Length = 81
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+L +LF+ DK G I EE + + TG I D + + D D + DG++ ++F
Sbjct: 16 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 73
>pdb|3Q98|A Chain A, Structure Of Ygew Encoded Protein From E. Coli
Length = 399
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 419 NKLGSTLGVDFQMKTIRVDERNVALQLWDTA-GQERFR-SMTKNYFRRADGVMLLYDVTN 476
++L L V +K +R + N++ +++++ G FR + T+ F A + LL
Sbjct: 36 DELKQVLDVAAALKALRAE--NISTKVFNSGLGISVFRDNSTRTRFSYASALNLL--GLA 91
Query: 477 ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533
++ + K+ + E V E + I CA+ + +R D REVG L Y
Sbjct: 92 QQDLDEGKSQIAHGETVRETANXISFCADAIGIRDDXYLGAGNAYXREVGAALDDGY 148
>pdb|1KSM|A Chain A, Average Nmr Solution Structure Of Ca Ln Calbindin D9k
pdb|1KQV|A Chain A, Family Of Nmr Solution Structures Of Ca Ln Calbindin D9k
Length = 79
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 25 EFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
EF L G + D +F +LD +GDG+VS E+F
Sbjct: 39 EFPSLLKGM----STLDELFEELDKNGDGEVSFEEF 70
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr,
30 Structures
Length = 76
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+L +LF+ DK G I EE + + TG I D + + D D + DG++ ++F
Sbjct: 11 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 68
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD---AIFADLDHDGDGKVSL 57
+S +LE F+ D +G+I E L T F + DS+ ++ +++D + DG+V
Sbjct: 438 LSRERLERAFRMFDSDNSGKISSTE---LATIFGVSDVDSETWKSVLSEVDKNNDGEVDF 494
Query: 58 EDF 60
++F
Sbjct: 495 DEF 497
>pdb|3CS1|A Chain A, Flagellar Calcium-binding Protein (fcabp) From T. Cruzi
Length = 219
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCT---GFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+L +F D G + EEF+ + + D A+F +LD +G G V+ ++F
Sbjct: 130 FELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEF 189
Query: 61 A 61
A
Sbjct: 190 A 190
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD---AIFADLDHDGDGKVSL 57
+S +LE F+ D +G+I E L T F + DS+ ++ +++D + DG+V
Sbjct: 439 LSRERLERAFRMFDSDNSGKISSTE---LATIFGVSDVDSETWKSVLSEVDKNNDGEVDF 495
Query: 58 EDF 60
++F
Sbjct: 496 DEF 498
>pdb|1HT9|A Chain A, Domain Swapping Ef-Hands
pdb|1HT9|B Chain B, Domain Swapping Ef-Hands
Length = 76
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 25 EFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
EF L G + D +F +LD +GDG+VS E+F
Sbjct: 36 EFPSLLKGM----STLDELFEELDKNGDGEVSFEEF 67
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
++ E F D GTG I +E + GF+ + + + +++D +G GK++ DF
Sbjct: 32 EIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDF 89
>pdb|1N65|A Chain A, Family Of Nmr Solution Structures Of Ca Ce Calbindin D9k
In Denaturating Conditions
Length = 75
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 25 EFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
EF L G + D +F +LD +GDG+VS E+F
Sbjct: 35 EFPSLLKGM----STLDELFEELDKNGDGEVSFEEF 66
>pdb|1YTD|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Native Structure
pdb|1YTE|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Phosphoribosylpyrophosphate Bound Structure
pdb|1YTK|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
With Nicotinate Mononucleotide
pdb|2I1O|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
Length = 398
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 213 MRKMEHETQEL---QAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSF---ENEELKITLE 266
+R+M + A++ V+ +L K I++ T H S + E K+TLE
Sbjct: 146 IRRMHPAISPMIDRSAYIGGADGVSGILGAKLIDQDPVGTMPHALSIMLGDEEAWKLTLE 205
Query: 267 KTKNNLDLVHAEMAQLKSEYEG-KCQELNQLVGDYLELDQGSDKQFAIQRLMEDI 320
TKN V + ++ K E+ V DY+ LD S ++ + L+ ++
Sbjct: 206 NTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKV-DYIRLDTPSSRRGNFEALIREV 259
>pdb|1F70|A Chain A, Refined Solution Structure Of Calmodulin N-Terminal
Domain
pdb|2PQ3|A Chain A, N-Terminal Calmodulin Zn-Trapped Intermediate
pdb|2KUG|A Chain A, Halothane Binds To Druggable Sites In
Calcium-Calmodulin: Solution Structure Of Halothane-Cam
N-Terminal Domain
Length = 76
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRL 75
F EFL AR++
Sbjct: 65 -FPEFLTMMARKM 76
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLED 59
S+ +L +LF+ DK G I +E + + TG I D + + D D + DG++ ++
Sbjct: 93 SEEELSDLFRMWDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDE 152
Query: 60 F 60
F
Sbjct: 153 F 153
>pdb|1J7O|A Chain A, Solution Structure Of Calcium-calmodulin N-terminal
Domain
Length = 76
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ +E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID------ 64
Query: 63 GFREFLNSDARRL 75
F EFL AR++
Sbjct: 65 -FPEFLTMMARKM 76
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+L +LF+ DK G I EE + + TG I D + + D D + DG++ ++F
Sbjct: 96 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
>pdb|1CDN|A Chain A, Solution Structure Of (Cd2+)1-Calbindin D9k Reveals
Details Of The Stepwise Structural Changes Along The
Apo--> (Ca2+) Ii1--> (Ca2+)i,Ii2 Binding Pathway
pdb|1CLB|A Chain A, Determination Of The Solution Structure Of Apo Calbindin
D9k By Nmr Spectroscopy
pdb|2BCA|A Chain A, High-Resolution Solution Structure Of Calcium-Loaded
Calbindin D9k
Length = 76
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 41 DAIFADLDHDGDGKVSLEDF 60
D +F +LD +GDG+VS E+F
Sbjct: 48 DELFEELDKNGDGEVSFEEF 67
>pdb|1KCY|A Chain A, Nmr Solution Structure Of Apo Calbindin D9k (F36g + P43m
Mutant)
Length = 75
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 41 DAIFADLDHDGDGKVSLEDF 60
D +F +LD +GDG+VS E+F
Sbjct: 47 DELFEELDKNGDGEVSFEEF 66
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain
Of Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr,
40 Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle,
Nmr, Minimized Average Structure
Length = 90
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 10 FKTCDKKGTGQIGPEEFRELCTGFDIQPT--DSDAIFADLDHDGDGKVSLEDF 60
F D G G I +E + PT + DAI ++D DG G + E+F
Sbjct: 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 78
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
++ E F D G+G I +E + GF+ + + + +++D DG G + E+F
Sbjct: 29 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEF 86
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 426 GVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN 485
G+ + +V + + DT G E F +M + D V+L+ + +
Sbjct: 40 GITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD----GVMPQ 95
Query: 486 WVEAVEEVTENSIPIVICANKVD 508
VEA+ ++PI++ NK+D
Sbjct: 96 TVEAINHAKAANVPIIVAINKMD 118
>pdb|2BCB|A Chain A, High-Resolution Solution Structure Of Calcium-Loaded
Calbindin D9k
pdb|1B1G|A Chain A, Solvated Refinement Of Ca-Loaded Calbindin D9k
Length = 75
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 41 DAIFADLDHDGDGKVSLEDF 60
D +F +LD +GDG+VS E+F
Sbjct: 47 DELFEELDKNGDGEVSFEEF 66
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal
Sensor Domain Of Centrin
Length = 96
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
++ E F D G+G I +E + GF+ + + + +++D DG G + E+F
Sbjct: 31 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEF 88
>pdb|2VSA|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|B Chain B, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
Length = 841
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 253 NFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFA 312
NF FEN++ I + KN + + E L + Q++ Y E GS+ Q+
Sbjct: 301 NFGFENQKWNIKYDSKKNAYKIYNRETPTLLLSWNSNSSNGEQVIRGYTE--SGSNNQYW 358
Query: 313 IQRLMEDIDSGRSTMRDCMDCS 334
+E +G R+ D S
Sbjct: 359 T---IEKNVNGFYKFRNLSDPS 377
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 394 KIVFAGDAAVGKSC---FIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
K++ G + GKS I+ +LG+T +D + +R N+ L LWD G
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGAT--IDVEHSHLRF-LGNMTLNLWDCGG 64
Query: 451 QERFRSMTKNYFRR--------ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS--IPI 500
Q+ F +NYF + ++ ++DV + ++ + +A++++ + S I
Sbjct: 65 QDVF---MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI 121
Query: 501 VICANKVDL 509
+ +K+DL
Sbjct: 122 FVLLHKMDL 130
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal
Muscle Troponin-C
Length = 76
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 10 FKTCDKKGTGQIGPEEFRELCTGFDIQPT--DSDAIFADLDHDGDGKVSLEDF 60
F D G G I +E + PT + DAI ++D DG G + E+F
Sbjct: 15 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,617,098
Number of Sequences: 62578
Number of extensions: 686554
Number of successful extensions: 3694
Number of sequences better than 100.0: 579
Number of HSP's better than 100.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 2605
Number of HSP's gapped (non-prelim): 866
length of query: 593
length of database: 14,973,337
effective HSP length: 104
effective length of query: 489
effective length of database: 8,465,225
effective search space: 4139495025
effective search space used: 4139495025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)