Query psy8073
Match_columns 593
No_of_seqs 534 out of 4113
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 17:41:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.2E-36 2.6E-41 276.2 19.9 177 388-570 5-182 (205)
2 KOG0078|consensus 100.0 7.4E-36 1.6E-40 275.5 20.7 172 388-565 8-179 (207)
3 KOG0094|consensus 100.0 2.1E-34 4.5E-39 260.1 18.2 170 387-562 17-187 (221)
4 KOG0098|consensus 100.0 3.9E-34 8.4E-39 256.1 18.7 176 389-570 3-178 (216)
5 KOG0092|consensus 100.0 3.5E-34 7.5E-39 259.2 18.4 172 390-567 3-174 (200)
6 KOG0080|consensus 100.0 1.3E-33 2.7E-38 246.0 16.6 167 389-561 8-175 (209)
7 KOG0087|consensus 100.0 3.2E-32 7E-37 249.7 17.2 172 387-564 9-180 (222)
8 cd04120 Rab12 Rab12 subfamily. 100.0 2.9E-31 6.3E-36 255.2 24.0 164 393-562 1-165 (202)
9 KOG0394|consensus 100.0 9.2E-32 2E-36 240.6 17.8 173 389-565 6-183 (210)
10 KOG0079|consensus 100.0 2.9E-32 6.3E-37 234.2 14.0 167 390-563 6-172 (198)
11 KOG0095|consensus 100.0 6.9E-32 1.5E-36 232.1 14.3 166 390-561 5-170 (213)
12 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-30 3.1E-35 248.0 24.8 168 390-564 4-171 (189)
13 KOG0093|consensus 100.0 2.4E-31 5.2E-36 228.4 15.9 169 389-563 18-186 (193)
14 cd04133 Rop_like Rop subfamily 100.0 5.3E-30 1.2E-34 241.4 21.0 166 393-560 2-173 (176)
15 cd04122 Rab14 Rab14 subfamily. 100.0 1E-29 2.2E-34 237.7 22.5 164 392-561 2-165 (166)
16 KOG0086|consensus 100.0 1.7E-30 3.7E-35 224.4 15.5 171 388-564 5-175 (214)
17 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.7E-30 1.7E-34 241.8 21.4 168 390-559 3-179 (182)
18 KOG0091|consensus 100.0 1.7E-30 3.8E-35 227.0 15.3 170 390-565 6-178 (213)
19 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.5E-29 5.4E-34 242.8 22.9 172 393-570 1-178 (201)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.7E-29 8.1E-34 244.6 23.6 170 391-562 12-190 (232)
21 cd04131 Rnd Rnd subfamily. Th 100.0 2.2E-29 4.7E-34 238.1 20.8 165 393-559 2-175 (178)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.5E-29 7.6E-34 235.6 22.0 164 392-562 2-166 (172)
23 cd04117 Rab15 Rab15 subfamily. 100.0 3.5E-29 7.5E-34 233.0 21.3 160 393-558 1-160 (161)
24 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.2E-29 9.1E-34 237.1 21.6 167 393-561 1-167 (182)
25 cd01867 Rab8_Rab10_Rab13_like 100.0 6.6E-29 1.4E-33 232.5 22.6 165 391-561 2-166 (167)
26 KOG0083|consensus 100.0 4.6E-31 1E-35 222.8 6.9 167 397-569 2-169 (192)
27 cd01865 Rab3 Rab3 subfamily. 100.0 7.5E-29 1.6E-33 231.7 22.6 163 393-561 2-164 (165)
28 cd01875 RhoG RhoG subfamily. 100.0 5.4E-29 1.2E-33 238.4 22.0 168 392-561 3-178 (191)
29 KOG0088|consensus 100.0 3E-30 6.6E-35 224.1 11.7 170 389-564 10-179 (218)
30 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.4E-28 3E-33 230.0 22.3 164 392-561 2-165 (166)
31 cd04127 Rab27A Rab27a subfamil 100.0 1.9E-28 4.1E-33 232.2 22.4 166 391-562 3-179 (180)
32 cd04112 Rab26 Rab26 subfamily. 100.0 2.7E-28 5.9E-33 233.6 23.2 165 393-563 1-166 (191)
33 cd04119 RJL RJL (RabJ-Like) su 100.0 2.2E-28 4.8E-33 228.3 21.8 162 393-560 1-167 (168)
34 cd04109 Rab28 Rab28 subfamily. 100.0 2.5E-28 5.4E-33 238.3 22.1 164 393-562 1-168 (215)
35 cd04136 Rap_like Rap-like subf 100.0 2.2E-28 4.7E-33 227.5 20.7 160 393-559 2-162 (163)
36 cd01868 Rab11_like Rab11-like. 100.0 3.3E-28 7.1E-33 227.1 21.9 162 392-559 3-164 (165)
37 PF00071 Ras: Ras family; Int 100.0 3.6E-28 7.7E-33 226.1 21.4 161 394-560 1-161 (162)
38 cd01866 Rab2 Rab2 subfamily. 100.0 5.7E-28 1.2E-32 226.4 22.7 165 391-561 3-167 (168)
39 KOG0081|consensus 100.0 4E-30 8.8E-35 223.5 7.3 171 390-566 7-187 (219)
40 PLN03071 GTP-binding nuclear p 100.0 4.5E-28 9.8E-33 236.8 22.4 164 390-562 11-174 (219)
41 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.1E-28 1.1E-32 227.2 22.0 164 394-561 2-166 (170)
42 PLN03110 Rab GTPase; Provision 100.0 5.8E-28 1.2E-32 235.7 23.1 168 389-562 9-176 (216)
43 cd04125 RabA_like RabA-like su 100.0 6.4E-28 1.4E-32 230.4 22.9 167 393-565 1-167 (188)
44 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.2E-28 9.2E-33 228.9 20.8 164 393-558 2-173 (175)
45 cd04175 Rap1 Rap1 subgroup. T 100.0 5.4E-28 1.2E-32 225.5 21.1 162 392-560 1-163 (164)
46 cd04144 Ras2 Ras2 subfamily. 100.0 4.2E-28 9.2E-33 232.1 20.7 165 394-565 1-168 (190)
47 cd04111 Rab39 Rab39 subfamily. 100.0 1.1E-27 2.4E-32 232.8 23.6 169 392-566 2-172 (211)
48 cd01864 Rab19 Rab19 subfamily. 100.0 8.2E-28 1.8E-32 224.5 21.8 162 391-558 2-164 (165)
49 PTZ00369 Ras-like protein; Pro 100.0 7.2E-28 1.6E-32 230.3 21.8 167 391-564 4-171 (189)
50 cd04110 Rab35 Rab35 subfamily. 100.0 1.1E-27 2.3E-32 231.1 23.1 165 391-562 5-169 (199)
51 cd04126 Rab20 Rab20 subfamily. 100.0 7.5E-28 1.6E-32 234.1 21.6 171 393-568 1-198 (220)
52 cd04113 Rab4 Rab4 subfamily. 100.0 8.3E-28 1.8E-32 223.4 21.0 161 393-559 1-161 (161)
53 cd04176 Rap2 Rap2 subgroup. T 100.0 7.2E-28 1.6E-32 224.3 20.5 160 393-559 2-162 (163)
54 cd01871 Rac1_like Rac1-like su 100.0 8.2E-28 1.8E-32 226.7 20.9 164 393-558 2-173 (174)
55 cd00877 Ran Ran (Ras-related n 100.0 9.6E-28 2.1E-32 224.5 21.0 160 393-561 1-160 (166)
56 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.2E-27 2.6E-32 232.8 22.3 170 393-564 2-180 (222)
57 cd04106 Rab23_lke Rab23-like s 100.0 1.2E-27 2.6E-32 222.4 21.1 159 393-558 1-161 (162)
58 PLN03108 Rab family protein; P 100.0 2.7E-27 5.8E-32 230.1 24.4 168 390-563 4-171 (210)
59 cd04118 Rab24 Rab24 subfamily. 100.0 2.9E-27 6.4E-32 226.8 23.8 168 393-563 1-169 (193)
60 cd04140 ARHI_like ARHI subfami 100.0 1.6E-27 3.5E-32 222.7 20.9 158 393-557 2-162 (165)
61 cd04134 Rho3 Rho3 subfamily. 100.0 1.6E-27 3.4E-32 227.9 21.1 167 393-561 1-175 (189)
62 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.3E-27 7.2E-32 219.0 21.4 159 393-559 2-161 (162)
63 KOG0097|consensus 100.0 1.4E-27 3E-32 203.7 16.9 170 389-564 8-177 (215)
64 smart00176 RAN Ran (Ras-relate 100.0 2.8E-27 6E-32 227.2 21.3 156 398-562 1-156 (200)
65 cd04124 RabL2 RabL2 subfamily. 100.0 3.9E-27 8.4E-32 219.2 21.5 159 393-561 1-159 (161)
66 cd04116 Rab9 Rab9 subfamily. 100.0 3.7E-27 7.9E-32 221.2 21.3 161 391-558 4-169 (170)
67 cd01873 RhoBTB RhoBTB subfamil 100.0 2.5E-27 5.5E-32 226.9 20.5 164 392-558 2-194 (195)
68 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.1E-27 8.9E-32 221.1 21.5 163 392-560 2-169 (170)
69 cd04142 RRP22 RRP22 subfamily. 100.0 3E-27 6.6E-32 227.2 20.5 167 393-565 1-179 (198)
70 smart00173 RAS Ras subfamily o 100.0 4.2E-27 9.2E-32 219.3 21.0 161 393-560 1-162 (164)
71 smart00175 RAB Rab subfamily o 100.0 7.1E-27 1.5E-31 217.5 22.0 163 393-561 1-163 (164)
72 cd01861 Rab6 Rab6 subfamily. 100.0 8.1E-27 1.7E-31 216.6 21.3 160 393-558 1-160 (161)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 8.6E-27 1.9E-31 217.0 21.4 161 392-559 2-163 (164)
74 cd01860 Rab5_related Rab5-rela 100.0 1.1E-26 2.4E-31 216.1 22.1 161 393-559 2-162 (163)
75 cd04103 Centaurin_gamma Centau 100.0 6.1E-27 1.3E-31 217.0 19.0 155 393-558 1-157 (158)
76 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.6E-26 3.4E-31 215.5 21.6 160 393-559 1-163 (164)
77 cd04132 Rho4_like Rho4-like su 99.9 1.9E-26 4.2E-31 219.9 22.2 170 393-566 1-173 (187)
78 PLN03118 Rab family protein; P 99.9 4.4E-26 9.5E-31 221.9 24.4 166 390-562 12-179 (211)
79 smart00174 RHO Rho (Ras homolo 99.9 1.7E-26 3.6E-31 217.5 19.8 164 395-560 1-172 (174)
80 cd04143 Rhes_like Rhes_like su 99.9 3E-26 6.4E-31 227.3 21.2 161 393-560 1-171 (247)
81 cd04123 Rab21 Rab21 subfamily. 99.9 6.1E-26 1.3E-30 210.4 22.0 161 393-559 1-161 (162)
82 cd01892 Miro2 Miro2 subfamily. 99.9 1.4E-26 2.9E-31 217.4 17.7 163 390-560 2-166 (169)
83 cd04114 Rab30 Rab30 subfamily. 99.9 7.9E-26 1.7E-30 211.8 22.7 164 390-559 5-168 (169)
84 cd01863 Rab18 Rab18 subfamily. 99.9 6.8E-26 1.5E-30 210.5 21.4 159 393-558 1-160 (161)
85 cd04148 RGK RGK subfamily. Th 99.9 5.7E-26 1.2E-30 222.3 21.8 163 393-563 1-166 (221)
86 cd04146 RERG_RasL11_like RERG/ 99.9 3.3E-26 7.1E-31 213.7 18.9 160 394-560 1-164 (165)
87 cd04177 RSR1 RSR1 subgroup. R 99.9 6.9E-26 1.5E-30 212.3 21.1 161 393-560 2-164 (168)
88 cd01862 Rab7 Rab7 subfamily. 99.9 1.1E-25 2.3E-30 211.3 22.4 164 393-562 1-169 (172)
89 cd04135 Tc10 TC10 subfamily. 99.9 6.6E-26 1.4E-30 213.4 20.2 165 393-559 1-173 (174)
90 cd04130 Wrch_1 Wrch-1 subfamil 99.9 8.7E-26 1.9E-30 212.7 20.0 163 393-557 1-171 (173)
91 cd00154 Rab Rab family. Rab G 99.9 3.5E-25 7.6E-30 203.9 20.6 158 393-556 1-158 (159)
92 cd04139 RalA_RalB RalA/RalB su 99.9 6.4E-25 1.4E-29 204.1 21.6 161 393-560 1-162 (164)
93 KOG0395|consensus 99.9 2.4E-25 5.1E-30 212.2 18.9 164 391-561 2-166 (196)
94 cd04149 Arf6 Arf6 subfamily. 99.9 2E-25 4.3E-30 209.2 18.0 155 390-557 7-167 (168)
95 KOG0393|consensus 99.9 4.4E-26 9.5E-31 212.0 11.9 169 391-561 3-180 (198)
96 cd01870 RhoA_like RhoA-like su 99.9 8.8E-25 1.9E-29 206.0 20.8 165 393-559 2-174 (175)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 6.4E-25 1.4E-29 208.8 19.5 165 392-565 3-175 (183)
98 cd04158 ARD1 ARD1 subfamily. 99.9 5.4E-25 1.2E-29 206.5 18.7 156 394-562 1-163 (169)
99 PLN00223 ADP-ribosylation fact 99.9 1.3E-24 2.9E-29 206.0 19.5 156 390-561 15-179 (181)
100 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.4E-24 3.1E-29 201.5 18.5 152 393-557 1-158 (159)
101 PTZ00133 ADP-ribosylation fact 99.9 2.1E-24 4.6E-29 204.9 19.7 161 390-563 15-181 (182)
102 KOG4252|consensus 99.9 2.2E-26 4.9E-31 204.2 5.4 170 389-565 17-186 (246)
103 cd04154 Arl2 Arl2 subfamily. 99.9 1.6E-24 3.4E-29 204.1 18.4 156 389-557 11-172 (173)
104 cd00876 Ras Ras family. The R 99.9 3E-24 6.6E-29 198.6 19.9 158 394-558 1-159 (160)
105 cd04147 Ras_dva Ras-dva subfam 99.9 3.2E-24 7E-29 206.6 20.5 162 394-561 1-164 (198)
106 cd01893 Miro1 Miro1 subfamily. 99.9 2.7E-24 5.8E-29 201.1 19.3 161 393-560 1-164 (166)
107 cd04129 Rho2 Rho2 subfamily. 99.9 4.3E-24 9.3E-29 203.8 21.1 170 393-564 2-177 (187)
108 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 3.9E-25 8.5E-30 206.4 13.4 155 395-557 2-163 (164)
109 cd04137 RheB Rheb (Ras Homolog 99.9 7.1E-24 1.5E-28 200.9 21.8 167 393-566 2-169 (180)
110 smart00177 ARF ARF-like small 99.9 3.2E-24 7E-29 202.4 19.1 156 391-559 12-173 (175)
111 PTZ00132 GTP-binding nuclear p 99.9 1E-23 2.2E-28 205.8 23.0 174 389-572 6-179 (215)
112 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.8E-24 6E-29 206.3 18.5 148 393-546 1-176 (202)
113 cd00157 Rho Rho (Ras homology) 99.9 5.3E-24 1.2E-28 199.6 19.6 163 393-557 1-170 (171)
114 cd04157 Arl6 Arl6 subfamily. 99.9 4.1E-24 8.9E-29 198.5 15.8 152 394-557 1-161 (162)
115 COG0486 ThdF Predicted GTPase 99.9 6.7E-25 1.5E-29 225.9 8.9 195 351-562 175-378 (454)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3.2E-23 7E-28 195.4 18.8 154 391-557 14-173 (174)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.7E-23 3.7E-28 194.1 15.7 152 394-557 1-159 (160)
118 PLN00023 GTP-binding protein; 99.9 6.2E-23 1.3E-27 205.9 20.8 149 387-535 16-189 (334)
119 cd04151 Arl1 Arl1 subfamily. 99.9 7.7E-24 1.7E-28 196.2 13.2 152 394-557 1-157 (158)
120 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.8E-23 3.9E-28 195.8 14.7 157 394-557 1-166 (167)
121 cd00879 Sar1 Sar1 subfamily. 99.9 5.2E-23 1.1E-27 196.8 18.1 156 390-558 17-189 (190)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.9 9.7E-23 2.1E-27 190.4 17.5 152 394-557 1-166 (167)
123 cd01890 LepA LepA subfamily. 99.9 1.6E-22 3.4E-27 191.3 17.4 154 394-559 2-176 (179)
124 PTZ00099 rab6; Provisional 99.9 3.4E-22 7.4E-27 188.3 19.3 141 415-561 3-143 (176)
125 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.3E-23 5E-28 222.4 11.8 189 351-563 165-363 (442)
126 PRK05291 trmE tRNA modificatio 99.9 7.5E-24 1.6E-28 227.5 8.1 188 351-561 173-371 (449)
127 smart00178 SAR Sar1p-like memb 99.9 3.4E-22 7.5E-27 190.1 18.0 156 390-558 15-183 (184)
128 TIGR03156 GTP_HflX GTP-binding 99.9 3.4E-23 7.4E-28 215.0 11.4 186 357-558 151-350 (351)
129 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.2E-22 4.8E-27 186.3 15.3 151 394-557 1-157 (158)
130 cd04159 Arl10_like Arl10-like 99.9 8E-22 1.7E-26 181.6 15.1 152 395-557 2-158 (159)
131 cd01897 NOG NOG1 is a nucleola 99.9 2.4E-21 5.2E-26 181.2 17.7 156 393-559 1-167 (168)
132 PRK11058 GTPase HflX; Provisio 99.9 2.7E-22 5.8E-27 213.0 11.4 197 352-561 154-363 (426)
133 KOG0073|consensus 99.9 6.2E-21 1.3E-25 168.0 17.9 165 389-561 13-179 (185)
134 cd01898 Obg Obg subfamily. Th 99.9 1.5E-21 3.3E-26 182.8 14.2 155 394-558 2-169 (170)
135 KOG1029|consensus 99.9 1.2E-20 2.6E-25 198.8 22.2 265 3-288 194-483 (1118)
136 cd01878 HflX HflX subfamily. 99.9 4.4E-21 9.6E-26 185.6 17.5 154 390-558 39-203 (204)
137 cd04155 Arl3 Arl3 subfamily. 99.9 4.5E-21 9.6E-26 180.3 16.8 153 389-557 11-172 (173)
138 TIGR02528 EutP ethanolamine ut 99.9 1.4E-21 3E-26 177.7 12.6 134 394-556 2-141 (142)
139 cd04171 SelB SelB subfamily. 99.9 4.3E-21 9.4E-26 178.3 16.1 156 394-557 2-163 (164)
140 PF00025 Arf: ADP-ribosylation 99.9 9.3E-21 2E-25 178.7 17.5 158 389-559 11-175 (175)
141 COG1100 GTPase SAR1 and relate 99.9 1.8E-20 3.8E-25 183.4 19.4 171 393-563 6-188 (219)
142 TIGR00231 small_GTP small GTP- 99.9 2E-20 4.3E-25 171.6 18.5 157 393-556 2-160 (161)
143 TIGR00436 era GTP-binding prot 99.9 1.4E-20 3.1E-25 189.8 16.8 164 394-571 2-174 (270)
144 PRK12299 obgE GTPase CgtA; Rev 99.8 4.5E-20 9.7E-25 190.2 19.5 160 393-561 159-329 (335)
145 PRK15494 era GTPase Era; Provi 99.8 3.1E-20 6.8E-25 192.7 17.6 165 390-572 50-227 (339)
146 PRK04213 GTP-binding protein; 99.8 1.6E-20 3.4E-25 181.3 14.0 154 390-561 7-193 (201)
147 cd01891 TypA_BipA TypA (tyrosi 99.8 2.5E-20 5.3E-25 179.0 15.1 150 393-551 3-173 (194)
148 PF02421 FeoB_N: Ferrous iron 99.8 5.6E-21 1.2E-25 173.8 9.4 148 393-555 1-156 (156)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2E-20 4.3E-25 174.7 13.4 159 393-560 1-166 (168)
150 PRK03003 GTP-binding protein D 99.8 2.4E-20 5.1E-25 202.6 15.1 168 391-568 210-390 (472)
151 cd01879 FeoB Ferrous iron tran 99.8 7.4E-20 1.6E-24 169.0 15.3 148 397-559 1-156 (158)
152 PRK03003 GTP-binding protein D 99.8 8.9E-20 1.9E-24 198.1 16.4 155 392-561 38-200 (472)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.5E-19 3.2E-24 166.5 15.4 146 392-559 1-156 (157)
154 KOG1673|consensus 99.8 6.2E-20 1.3E-24 159.7 11.6 170 390-561 18-187 (205)
155 COG1159 Era GTPase [General fu 99.8 2.6E-19 5.7E-24 174.9 15.2 169 391-571 5-182 (298)
156 TIGR02729 Obg_CgtA Obg family 99.8 3.6E-19 7.8E-24 183.4 16.7 157 393-559 158-328 (329)
157 cd01881 Obg_like The Obg-like 99.8 1.4E-19 3.1E-24 170.2 12.5 153 397-558 1-175 (176)
158 cd00882 Ras_like_GTPase Ras-li 99.8 9.8E-19 2.1E-23 158.6 17.6 153 397-556 1-156 (157)
159 COG1160 Predicted GTPases [Gen 99.8 1.1E-19 2.5E-24 186.9 12.0 173 390-568 176-359 (444)
160 TIGR03594 GTPase_EngA ribosome 99.8 2.2E-19 4.8E-24 193.8 14.8 165 391-564 171-348 (429)
161 PRK00454 engB GTP-binding prot 99.8 6.9E-19 1.5E-23 169.0 16.7 163 388-561 20-195 (196)
162 TIGR01393 lepA GTP-binding pro 99.8 6.1E-19 1.3E-23 194.9 18.5 156 393-560 4-180 (595)
163 cd01894 EngA1 EngA1 subfamily. 99.8 4.6E-19 9.9E-24 163.3 14.0 145 396-558 1-156 (157)
164 KOG0070|consensus 99.8 2.2E-19 4.7E-24 163.0 11.3 165 389-561 14-179 (181)
165 PRK15467 ethanolamine utilizat 99.8 4E-19 8.6E-24 164.6 13.4 140 394-561 3-148 (158)
166 cd00881 GTP_translation_factor 99.8 5.3E-19 1.1E-23 168.2 14.6 158 394-559 1-186 (189)
167 PRK12297 obgE GTPase CgtA; Rev 99.8 1.5E-18 3.2E-23 183.2 19.0 157 393-562 159-329 (424)
168 PF08477 Miro: Miro-like prote 99.8 5E-19 1.1E-23 155.6 12.7 114 394-508 1-119 (119)
169 cd01889 SelB_euk SelB subfamil 99.8 8.4E-19 1.8E-23 168.0 15.2 161 393-560 1-186 (192)
170 TIGR03598 GTPase_YsxC ribosome 99.8 9.7E-19 2.1E-23 165.7 14.5 150 389-549 15-179 (179)
171 PRK00089 era GTPase Era; Revie 99.8 3.1E-18 6.8E-23 175.1 18.1 169 391-571 4-181 (292)
172 cd01895 EngA2 EngA2 subfamily. 99.8 3E-18 6.6E-23 160.3 16.2 156 392-558 2-173 (174)
173 COG2262 HflX GTPases [General 99.8 6.2E-19 1.3E-23 178.8 12.1 201 349-562 146-358 (411)
174 PRK00093 GTP-binding protein D 99.8 2.1E-18 4.6E-23 186.4 16.3 164 391-562 172-346 (435)
175 PRK12296 obgE GTPase CgtA; Rev 99.8 3.1E-18 6.8E-23 182.8 17.1 164 392-564 159-344 (500)
176 KOG0075|consensus 99.8 3.3E-19 7.2E-24 153.8 7.7 155 391-560 19-182 (186)
177 KOG1191|consensus 99.8 2.8E-19 6.1E-24 183.6 7.9 188 374-564 250-454 (531)
178 PRK12298 obgE GTPase CgtA; Rev 99.8 4E-18 8.6E-23 179.1 16.8 169 393-571 160-343 (390)
179 COG1160 Predicted GTPases [Gen 99.8 1.6E-18 3.4E-23 178.6 13.4 152 393-560 4-165 (444)
180 TIGR00487 IF-2 translation ini 99.8 6.7E-18 1.5E-22 185.7 19.1 159 389-557 84-247 (587)
181 KOG0096|consensus 99.8 6.7E-19 1.5E-23 158.9 8.7 163 390-561 8-170 (216)
182 cd04105 SR_beta Signal recogni 99.8 5.3E-18 1.1E-22 163.7 15.2 116 394-512 2-124 (203)
183 CHL00189 infB translation init 99.8 8.8E-18 1.9E-22 187.1 18.2 163 389-559 241-409 (742)
184 cd04163 Era Era subfamily. Er 99.8 1E-17 2.2E-22 155.4 15.7 156 392-558 3-167 (168)
185 TIGR03594 GTPase_EngA ribosome 99.8 5.6E-18 1.2E-22 182.8 14.9 150 394-561 1-161 (429)
186 PRK09518 bifunctional cytidyla 99.8 4.8E-18 1E-22 193.0 15.1 164 391-568 449-629 (712)
187 TIGR00475 selB selenocysteine- 99.8 1.2E-17 2.5E-22 184.7 17.4 159 393-561 1-167 (581)
188 PRK05306 infB translation init 99.8 1E-17 2.2E-22 188.4 17.0 160 389-558 287-450 (787)
189 PRK00093 GTP-binding protein D 99.8 7.2E-18 1.6E-22 182.2 15.1 146 393-558 2-160 (435)
190 PRK09518 bifunctional cytidyla 99.7 2E-17 4.3E-22 188.0 18.1 157 390-561 273-437 (712)
191 cd01888 eIF2_gamma eIF2-gamma 99.7 1.6E-17 3.5E-22 160.5 14.3 161 393-560 1-199 (203)
192 KOG1423|consensus 99.7 2.6E-17 5.7E-22 159.4 14.9 200 387-591 67-301 (379)
193 KOG4423|consensus 99.7 1.9E-19 4E-24 161.7 -0.3 175 389-568 22-202 (229)
194 PF00009 GTP_EFTU: Elongation 99.7 7.4E-18 1.6E-22 160.9 10.7 162 391-560 2-187 (188)
195 KOG3883|consensus 99.7 8.1E-17 1.8E-21 140.1 15.9 166 389-561 6-176 (198)
196 PRK05433 GTP-binding protein L 99.7 5E-17 1.1E-21 180.0 18.0 158 392-561 7-185 (600)
197 TIGR00491 aIF-2 translation in 99.7 5.8E-17 1.3E-21 178.0 16.5 165 391-559 3-215 (590)
198 PRK09554 feoB ferrous iron tra 99.7 1E-16 2.2E-21 181.4 18.3 153 392-559 3-167 (772)
199 KOG0071|consensus 99.7 4.2E-17 9E-22 139.8 10.8 157 391-560 16-178 (180)
200 TIGR00437 feoB ferrous iron tr 99.7 7.5E-17 1.6E-21 178.5 15.7 144 399-559 1-154 (591)
201 KOG0076|consensus 99.7 1.1E-17 2.4E-22 149.0 7.2 169 388-562 13-189 (197)
202 cd01896 DRG The developmentall 99.7 3.5E-16 7.5E-21 154.1 18.5 152 394-560 2-226 (233)
203 cd04166 CysN_ATPS CysN_ATPS su 99.7 6.1E-17 1.3E-21 157.0 11.7 153 394-551 1-185 (208)
204 cd01876 YihA_EngB The YihA (En 99.7 2.6E-16 5.7E-21 146.3 14.9 152 394-558 1-169 (170)
205 COG2229 Predicted GTPase [Gene 99.7 5.4E-16 1.2E-20 140.6 16.2 156 389-558 7-176 (187)
206 cd00880 Era_like Era (E. coli 99.7 1.4E-16 3.1E-21 146.0 12.5 153 397-558 1-162 (163)
207 PRK12317 elongation factor 1-a 99.7 2.2E-16 4.7E-21 169.8 13.8 158 390-552 4-197 (425)
208 COG0218 Predicted GTPase [Gene 99.7 9.1E-16 2E-20 142.5 15.5 158 390-561 22-198 (200)
209 TIGR00483 EF-1_alpha translati 99.7 2.2E-16 4.9E-21 169.6 13.3 160 389-552 4-199 (426)
210 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.1E-15 2.3E-20 146.2 16.0 150 392-548 2-171 (195)
211 PRK10218 GTP-binding protein; 99.7 1.7E-15 3.6E-20 167.0 18.7 162 391-560 4-195 (607)
212 PRK10512 selenocysteinyl-tRNA- 99.7 1.2E-15 2.6E-20 169.3 15.8 157 393-560 1-166 (614)
213 KOG1707|consensus 99.7 3.7E-16 7.9E-21 163.6 10.6 176 389-571 6-186 (625)
214 PRK04004 translation initiatio 99.6 1.9E-15 4.2E-20 166.7 16.5 163 390-559 4-217 (586)
215 TIGR01394 TypA_BipA GTP-bindin 99.6 1.4E-15 2.9E-20 168.0 15.1 160 394-561 3-192 (594)
216 KOG0074|consensus 99.6 1.4E-15 3E-20 130.7 10.7 157 388-559 13-178 (185)
217 cd04167 Snu114p Snu114p subfam 99.6 1.5E-15 3.2E-20 147.9 11.8 113 394-510 2-136 (213)
218 COG0370 FeoB Fe2+ transport sy 99.6 3.2E-15 7E-20 161.0 15.2 157 392-563 3-167 (653)
219 cd04168 TetM_like Tet(M)-like 99.6 3E-15 6.4E-20 147.7 13.7 114 394-511 1-130 (237)
220 TIGR03680 eif2g_arch translati 99.6 3.4E-15 7.3E-20 159.2 14.3 163 391-560 3-196 (406)
221 cd01883 EF1_alpha Eukaryotic e 99.6 2.6E-15 5.7E-20 146.8 11.3 152 394-549 1-194 (219)
222 PRK12735 elongation factor Tu; 99.6 7.8E-15 1.7E-19 155.9 15.7 165 388-559 8-202 (396)
223 COG1163 DRG Predicted GTPase [ 99.6 2.2E-14 4.7E-19 140.9 15.7 183 392-589 63-319 (365)
224 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.6E-14 3.4E-19 141.2 14.9 155 394-556 1-219 (224)
225 PRK12736 elongation factor Tu; 99.6 1.4E-14 3.1E-19 153.8 15.6 165 389-560 9-201 (394)
226 PRK04000 translation initiatio 99.6 1.6E-14 3.4E-19 154.0 14.9 164 389-560 6-201 (411)
227 cd04169 RF3 RF3 subfamily. Pe 99.6 3E-14 6.6E-19 142.9 15.8 116 393-512 3-138 (267)
228 cd04104 p47_IIGP_like p47 (47- 99.6 2E-14 4.3E-19 138.2 13.5 166 393-565 2-189 (197)
229 TIGR00485 EF-Tu translation el 99.6 2.2E-14 4.8E-19 152.5 14.9 151 389-546 9-179 (394)
230 PF10662 PduV-EutP: Ethanolami 99.6 3.6E-14 7.8E-19 126.3 12.7 135 394-556 3-142 (143)
231 COG1084 Predicted GTPase [Gene 99.6 1E-13 2.2E-18 136.9 16.7 157 391-559 167-335 (346)
232 KOG1489|consensus 99.6 3.6E-14 7.9E-19 138.7 13.3 153 393-557 197-364 (366)
233 CHL00071 tufA elongation facto 99.6 5.4E-14 1.2E-18 150.1 15.9 152 389-547 9-180 (409)
234 cd01885 EF2 EF2 (for archaea a 99.6 1.1E-13 2.4E-18 134.7 16.3 113 394-510 2-138 (222)
235 KOG0072|consensus 99.5 7.8E-15 1.7E-19 126.6 6.8 163 391-561 17-180 (182)
236 cd01899 Ygr210 Ygr210 subfamil 99.5 1.2E-13 2.7E-18 141.2 16.2 81 395-475 1-110 (318)
237 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.4E-13 3.1E-18 132.2 15.8 174 393-570 1-194 (196)
238 KOG0030|consensus 99.5 1.9E-14 4E-19 123.4 7.8 137 3-152 10-151 (152)
239 PRK05124 cysN sulfate adenylyl 99.5 8.7E-14 1.9E-18 150.5 14.1 158 390-552 25-217 (474)
240 cd01886 EF-G Elongation factor 99.5 1.6E-13 3.4E-18 137.9 13.8 114 394-511 1-130 (270)
241 PRK00741 prfC peptide chain re 99.5 2.3E-13 4.9E-18 148.6 16.0 118 390-511 8-145 (526)
242 PLN03126 Elongation factor Tu; 99.5 2.7E-13 5.9E-18 146.1 16.1 152 389-547 78-249 (478)
243 cd04170 EF-G_bact Elongation f 99.5 1.9E-13 4.2E-18 137.9 14.1 152 394-557 1-170 (268)
244 TIGR02034 CysN sulfate adenyly 99.5 1.1E-13 2.5E-18 147.4 12.4 153 393-550 1-187 (406)
245 PRK00049 elongation factor Tu; 99.5 3.7E-13 8.1E-18 142.9 16.1 165 388-559 8-202 (396)
246 PF01926 MMR_HSR1: 50S ribosom 99.5 1.8E-13 4E-18 119.8 10.8 105 394-506 1-116 (116)
247 COG0532 InfB Translation initi 99.5 7.5E-13 1.6E-17 139.1 17.1 163 390-560 3-170 (509)
248 PRK13351 elongation factor G; 99.5 4.5E-13 9.8E-18 152.5 15.8 119 390-512 6-140 (687)
249 COG3596 Predicted GTPase [Gene 99.5 1.8E-13 3.9E-18 132.1 10.5 167 390-560 37-222 (296)
250 cd01850 CDC_Septin CDC/Septin. 99.5 3.4E-13 7.3E-18 136.0 12.9 143 392-543 4-185 (276)
251 PRK05506 bifunctional sulfate 99.5 3.8E-13 8.2E-18 151.4 14.5 157 389-550 21-211 (632)
252 PLN00043 elongation factor 1-a 99.5 2.9E-13 6.3E-18 145.3 12.7 156 390-550 5-203 (447)
253 PLN03127 Elongation factor Tu; 99.5 9.2E-13 2E-17 141.3 15.8 165 389-560 58-252 (447)
254 PRK09602 translation-associate 99.5 1.7E-12 3.7E-17 136.8 17.5 83 393-475 2-113 (396)
255 TIGR00503 prfC peptide chain r 99.5 1.5E-12 3.2E-17 142.3 17.5 118 390-511 9-146 (527)
256 KOG1145|consensus 99.5 5.1E-13 1.1E-17 138.8 12.5 160 389-559 150-315 (683)
257 PTZ00141 elongation factor 1- 99.4 8.3E-13 1.8E-17 141.9 11.7 156 390-550 5-203 (446)
258 PF09439 SRPRB: Signal recogni 99.4 2.8E-13 6E-18 126.2 6.6 118 391-512 2-127 (181)
259 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 1.8E-12 3.8E-17 126.2 12.4 166 394-565 1-178 (232)
260 PRK12739 elongation factor G; 99.4 3.4E-12 7.3E-17 145.0 16.1 118 390-511 6-139 (691)
261 KOG0031|consensus 99.4 2.7E-12 5.9E-17 112.0 11.4 131 4-151 32-164 (171)
262 TIGR00484 EF-G translation elo 99.4 2.7E-12 5.8E-17 145.8 14.4 144 390-545 8-171 (689)
263 COG0536 Obg Predicted GTPase [ 99.4 6.1E-12 1.3E-16 124.9 14.0 161 394-563 161-336 (369)
264 PTZ00327 eukaryotic translatio 99.3 1E-11 2.2E-16 133.1 14.6 164 390-560 32-233 (460)
265 KOG1144|consensus 99.3 2.1E-10 4.6E-15 122.8 24.0 167 389-563 472-690 (1064)
266 KOG0077|consensus 99.3 4.9E-12 1.1E-16 112.3 9.2 156 390-558 18-191 (193)
267 PRK09866 hypothetical protein; 99.3 5.5E-11 1.2E-15 127.9 18.3 109 441-557 230-350 (741)
268 KOG0462|consensus 99.3 6.3E-12 1.4E-16 131.0 10.6 163 390-561 58-236 (650)
269 KOG0090|consensus 99.3 1.2E-11 2.6E-16 114.7 11.2 161 392-558 38-237 (238)
270 PTZ00258 GTP-binding protein; 99.3 4E-11 8.7E-16 125.0 15.9 86 388-475 17-126 (390)
271 PRK12740 elongation factor G; 99.3 2E-11 4.3E-16 138.8 14.7 110 398-511 1-126 (668)
272 COG5126 FRQ1 Ca2+-binding prot 99.3 1.4E-11 3.1E-16 111.2 10.5 135 4-152 20-156 (160)
273 COG0481 LepA Membrane GTPase L 99.3 1.7E-11 3.7E-16 125.7 12.3 159 391-561 8-187 (603)
274 COG5256 TEF1 Translation elong 99.3 2E-11 4.4E-16 124.3 12.0 159 390-552 5-203 (428)
275 KOG0410|consensus 99.3 1E-11 2.2E-16 121.7 9.1 156 389-562 175-343 (410)
276 PRK00007 elongation factor G; 99.3 1.5E-11 3.3E-16 139.5 11.8 145 389-545 7-171 (693)
277 smart00010 small_GTPase Small 99.3 2.6E-11 5.6E-16 106.9 10.5 114 393-549 1-115 (124)
278 KOG0027|consensus 99.3 2.4E-11 5.3E-16 111.5 10.6 137 3-152 7-149 (151)
279 PRK14845 translation initiatio 99.3 7.3E-11 1.6E-15 136.2 15.7 153 403-559 472-672 (1049)
280 TIGR00490 aEF-2 translation el 99.2 2.7E-11 5.9E-16 138.0 10.6 118 390-511 17-152 (720)
281 COG4917 EutP Ethanolamine util 99.2 5.5E-11 1.2E-15 100.8 8.6 137 393-557 2-143 (148)
282 KOG3905|consensus 99.2 4.2E-10 9E-15 110.3 15.7 191 388-583 48-311 (473)
283 PF05783 DLIC: Dynein light in 99.2 4.9E-10 1.1E-14 119.8 17.9 190 390-584 23-286 (472)
284 cd01853 Toc34_like Toc34-like 99.2 3.3E-10 7.1E-15 112.3 15.0 121 388-512 27-164 (249)
285 KOG1490|consensus 99.2 8.8E-11 1.9E-15 121.3 10.9 161 392-558 168-339 (620)
286 TIGR00991 3a0901s02IAP34 GTP-b 99.2 2.8E-10 6E-15 114.4 13.4 119 390-511 36-167 (313)
287 cd01882 BMS1 Bms1. Bms1 is an 99.2 3.4E-10 7.3E-15 111.0 13.0 145 389-547 36-183 (225)
288 PRK13768 GTPase; Provisional 99.2 1.3E-10 2.9E-15 115.8 10.0 118 442-560 98-247 (253)
289 TIGR02836 spore_IV_A stage IV 99.1 6.5E-10 1.4E-14 114.0 14.9 144 390-544 15-219 (492)
290 PRK09601 GTP-binding protein Y 99.1 1E-09 2.3E-14 113.2 16.1 81 393-475 3-107 (364)
291 TIGR00157 ribosome small subun 99.1 3E-10 6.5E-15 112.7 11.1 96 452-557 24-120 (245)
292 KOG1532|consensus 99.1 3.8E-10 8.3E-15 108.4 9.4 125 441-567 116-271 (366)
293 PF04548 AIG1: AIG1 family; I 99.1 8.6E-10 1.9E-14 107.2 11.8 172 393-570 1-196 (212)
294 PRK09435 membrane ATPase/prote 99.1 1.9E-09 4E-14 110.7 13.6 108 440-561 148-261 (332)
295 KOG0458|consensus 99.0 7.6E-10 1.7E-14 116.8 9.7 160 389-551 174-373 (603)
296 TIGR00101 ureG urease accessor 99.0 1.3E-09 2.8E-14 104.6 10.4 102 441-559 92-195 (199)
297 cd01900 YchF YchF subfamily. 99.0 2.9E-09 6.4E-14 106.5 13.3 79 395-475 1-103 (274)
298 PRK07560 elongation factor EF- 99.0 2.2E-09 4.8E-14 122.8 14.0 117 390-510 18-152 (731)
299 cd05022 S-100A13 S-100A13: S-1 99.0 8.5E-10 1.8E-14 90.8 7.6 64 4-67 8-76 (89)
300 PTZ00416 elongation factor 2; 99.0 1.6E-09 3.4E-14 125.3 12.2 117 390-510 17-157 (836)
301 COG1217 TypA Predicted membran 99.0 2.8E-09 6.1E-14 109.4 12.2 161 393-561 6-196 (603)
302 PLN00116 translation elongatio 99.0 1.7E-09 3.7E-14 125.2 11.8 118 389-510 16-163 (843)
303 PF13499 EF-hand_7: EF-hand do 99.0 1.8E-09 4E-14 84.1 7.8 60 5-64 1-66 (66)
304 COG2895 CysN GTPases - Sulfate 99.0 4.8E-09 1E-13 104.4 12.4 155 390-549 4-192 (431)
305 smart00027 EH Eps15 homology d 99.0 2.7E-09 5.8E-14 89.9 9.0 66 4-69 10-75 (96)
306 TIGR00073 hypB hydrogenase acc 99.0 3.7E-09 8.1E-14 102.4 10.8 149 391-559 21-206 (207)
307 PF03029 ATP_bind_1: Conserved 98.9 1.3E-09 2.8E-14 107.4 7.1 118 442-559 92-236 (238)
308 PF00350 Dynamin_N: Dynamin fa 98.9 7.4E-09 1.6E-13 96.6 11.8 62 443-507 103-168 (168)
309 COG5257 GCD11 Translation init 98.9 4.5E-09 9.7E-14 103.3 10.0 166 390-561 8-203 (415)
310 KOG0028|consensus 98.9 1.2E-08 2.7E-13 90.1 11.5 135 3-150 32-168 (172)
311 COG5126 FRQ1 Ca2+-binding prot 98.9 2.8E-09 6E-14 96.5 7.6 65 2-66 90-156 (160)
312 TIGR00750 lao LAO/AO transport 98.9 5.3E-09 1.1E-13 107.1 10.4 107 440-560 126-238 (300)
313 KOG0461|consensus 98.9 1.3E-08 2.8E-13 100.7 12.3 165 390-561 5-194 (522)
314 COG0012 Predicted GTPase, prob 98.9 2.9E-08 6.2E-13 101.0 15.0 84 392-475 2-108 (372)
315 TIGR00993 3a0901s04IAP86 chlor 98.9 2.7E-08 5.9E-13 107.8 14.7 121 389-511 115-250 (763)
316 KOG1486|consensus 98.9 4.5E-08 9.8E-13 93.1 14.3 182 392-588 62-317 (364)
317 KOG3886|consensus 98.9 2.3E-09 4.9E-14 100.7 5.2 116 393-512 5-131 (295)
318 cd00052 EH Eps15 homology doma 98.9 7.1E-09 1.5E-13 80.9 7.3 62 6-67 1-62 (67)
319 KOG0027|consensus 98.8 7.4E-09 1.6E-13 95.0 7.7 65 2-66 83-149 (151)
320 cd05027 S-100B S-100B: S-100B 98.8 1.2E-08 2.5E-13 84.2 8.1 64 4-67 8-80 (88)
321 smart00053 DYNc Dynamin, GTPas 98.8 3.8E-08 8.2E-13 96.6 12.8 69 441-512 125-207 (240)
322 KOG2486|consensus 98.8 8.4E-09 1.8E-13 99.8 7.3 163 389-558 133-314 (320)
323 COG3276 SelB Selenocysteine-sp 98.8 3.3E-08 7.1E-13 101.9 11.9 160 394-560 2-162 (447)
324 PTZ00183 centrin; Provisional 98.8 5.9E-08 1.3E-12 89.4 12.2 137 3-152 16-154 (158)
325 KOG1707|consensus 98.8 7.7E-08 1.7E-12 101.9 14.3 167 383-560 416-583 (625)
326 PF05049 IIGP: Interferon-indu 98.8 3E-08 6.5E-13 102.5 10.6 168 391-566 34-224 (376)
327 cd00066 G-alpha G protein alph 98.7 9.1E-08 2E-12 98.7 13.0 71 440-510 160-241 (317)
328 COG0050 TufB GTPases - transla 98.7 5.5E-08 1.2E-12 94.6 10.5 189 389-585 9-218 (394)
329 PF00735 Septin: Septin; Inte 98.7 1.3E-07 2.9E-12 95.4 13.3 116 392-512 4-157 (281)
330 cd05026 S-100Z S-100Z: S-100Z 98.7 4.6E-08 1E-12 81.7 8.2 65 4-68 10-83 (93)
331 cd05025 S-100A1 S-100A1: S-100 98.7 3.8E-08 8.2E-13 82.2 7.4 65 3-67 8-81 (92)
332 PF12763 EF-hand_4: Cytoskelet 98.7 6.1E-08 1.3E-12 82.1 8.5 66 3-69 9-74 (104)
333 KOG0468|consensus 98.7 8.3E-08 1.8E-12 102.2 10.7 118 388-509 124-261 (971)
334 COG0480 FusA Translation elong 98.7 1.7E-07 3.7E-12 104.8 13.4 120 389-512 7-143 (697)
335 COG4108 PrfC Peptide chain rel 98.7 1.9E-07 4E-12 95.8 12.2 115 393-511 13-147 (528)
336 KOG0705|consensus 98.7 7.8E-08 1.7E-12 100.5 9.3 163 389-562 27-191 (749)
337 cd05031 S-100A10_like S-100A10 98.6 8.6E-08 1.9E-12 80.4 7.7 65 3-67 7-80 (94)
338 COG5258 GTPBP1 GTPase [General 98.6 2.3E-07 4.9E-12 93.5 11.8 172 385-561 110-339 (527)
339 cd04178 Nucleostemin_like Nucl 98.6 5.8E-08 1.2E-12 90.9 6.9 59 389-451 114-172 (172)
340 cd01859 MJ1464 MJ1464. This f 98.6 1.2E-07 2.7E-12 87.3 8.8 95 454-560 2-96 (156)
341 PTZ00184 calmodulin; Provision 98.6 3.3E-07 7.2E-12 83.3 11.6 137 3-152 10-148 (149)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 8.2E-08 1.8E-12 87.0 6.5 54 394-451 85-138 (141)
343 cd01858 NGP_1 NGP-1. Autoanti 98.6 9.9E-08 2.1E-12 88.2 7.1 57 391-451 101-157 (157)
344 cd01855 YqeH YqeH. YqeH is an 98.6 2.6E-07 5.6E-12 88.2 9.8 94 454-560 24-125 (190)
345 cd05029 S-100A6 S-100A6: S-100 98.6 2.6E-07 5.7E-12 76.1 8.2 64 5-68 11-81 (88)
346 COG0378 HypB Ni2+-binding GTPa 98.6 5.7E-07 1.2E-11 83.4 11.1 80 466-559 119-200 (202)
347 cd00252 SPARC_EC SPARC_EC; ext 98.5 2.3E-07 5.1E-12 80.2 7.5 60 3-64 47-106 (116)
348 cd00213 S-100 S-100: S-100 dom 98.5 2.9E-07 6.3E-12 76.1 7.4 64 4-67 8-80 (88)
349 PF03308 ArgK: ArgK protein; 98.5 6.4E-08 1.4E-12 94.1 3.8 154 390-560 27-230 (266)
350 PRK12289 GTPase RsgA; Reviewed 98.5 5.9E-07 1.3E-11 93.4 10.9 92 455-557 80-172 (352)
351 cd05023 S-100A11 S-100A11: S-1 98.5 4.7E-07 1E-11 74.7 8.0 64 4-67 9-81 (89)
352 KOG1954|consensus 98.5 7.5E-07 1.6E-11 89.3 10.3 120 390-512 56-226 (532)
353 KOG1029|consensus 98.5 0.00011 2.5E-09 79.6 27.2 66 2-67 11-78 (1118)
354 KOG0447|consensus 98.5 7.3E-06 1.6E-10 85.9 17.6 121 390-512 306-494 (980)
355 COG1703 ArgK Putative periplas 98.5 5.7E-07 1.2E-11 88.6 8.9 158 389-563 48-257 (323)
356 PF14658 EF-hand_9: EF-hand do 98.5 3.2E-07 6.9E-12 69.8 5.5 59 9-67 3-65 (66)
357 PRK09563 rbgA GTPase YlqF; Rev 98.5 3.7E-07 8.1E-12 92.9 7.9 58 390-451 119-176 (287)
358 cd01856 YlqF YlqF. Proteins o 98.4 4.3E-07 9.3E-12 85.2 7.3 59 389-451 112-170 (171)
359 COG1161 Predicted GTPases [Gen 98.4 3.1E-07 6.7E-12 94.7 6.8 59 389-451 129-187 (322)
360 PRK00098 GTPase RsgA; Reviewed 98.4 1.6E-06 3.4E-11 88.8 11.5 86 461-556 77-163 (298)
361 TIGR03596 GTPase_YlqF ribosome 98.4 5E-07 1.1E-11 91.5 7.5 58 390-451 116-173 (276)
362 cd01855 YqeH YqeH. YqeH is an 98.4 3.8E-07 8.3E-12 87.0 5.9 58 391-451 126-190 (190)
363 PRK10463 hydrogenase nickel in 98.4 3E-07 6.6E-12 92.0 5.2 56 498-558 231-287 (290)
364 cd01854 YjeQ_engC YjeQ/EngC. 98.4 1.1E-06 2.4E-11 89.4 9.4 88 459-557 73-161 (287)
365 cd01859 MJ1464 MJ1464. This f 98.4 8E-07 1.7E-11 81.9 7.3 57 391-451 100-156 (156)
366 COG5019 CDC3 Septin family pro 98.4 5.2E-06 1.1E-10 84.2 13.0 140 390-538 21-199 (373)
367 KOG0028|consensus 98.3 1.2E-06 2.5E-11 77.8 7.1 65 2-66 104-170 (172)
368 KOG2655|consensus 98.3 6.5E-06 1.4E-10 84.2 13.5 163 391-565 20-219 (366)
369 PF13833 EF-hand_8: EF-hand do 98.3 1.3E-06 2.8E-11 65.0 6.3 50 17-66 1-53 (54)
370 KOG0041|consensus 98.3 1.2E-06 2.6E-11 80.3 7.2 65 5-69 100-166 (244)
371 KOG0082|consensus 98.3 9E-06 1.9E-10 83.2 13.3 133 428-562 184-346 (354)
372 cd00051 EFh EF-hand, calcium b 98.3 2.3E-06 4.9E-11 64.7 6.8 59 6-64 2-62 (63)
373 cd01849 YlqF_related_GTPase Yl 98.3 1.5E-06 3.3E-11 80.1 6.8 58 390-451 98-155 (155)
374 TIGR03597 GTPase_YqeH ribosome 98.3 3.1E-06 6.6E-11 89.0 9.8 95 451-558 50-151 (360)
375 KOG0034|consensus 98.3 2.3E-06 5E-11 80.3 7.8 65 3-67 103-176 (187)
376 PTZ00183 centrin; Provisional 98.3 2.7E-06 5.8E-11 78.3 8.0 64 3-66 89-154 (158)
377 PRK12288 GTPase RsgA; Reviewed 98.2 4.7E-06 1E-10 86.7 10.3 88 462-557 118-205 (347)
378 KOG1491|consensus 98.2 3.5E-06 7.5E-11 84.1 8.2 86 389-476 17-126 (391)
379 KOG1424|consensus 98.2 1.8E-06 3.9E-11 90.5 6.0 63 385-451 307-369 (562)
380 smart00275 G_alpha G protein a 98.2 1.7E-05 3.6E-10 82.6 13.2 136 422-561 169-335 (342)
381 TIGR00092 GTP-binding protein 98.2 4.2E-06 9.1E-11 86.7 8.6 82 393-475 3-108 (368)
382 KOG1143|consensus 98.2 4.7E-06 1E-10 83.7 8.3 157 392-552 167-380 (591)
383 COG5192 BMS1 GTP-binding prote 98.2 1.3E-05 2.9E-10 84.2 11.9 143 389-545 66-211 (1077)
384 cd01858 NGP_1 NGP-1. Autoanti 98.2 6.3E-06 1.4E-10 76.1 8.4 92 459-559 3-94 (157)
385 cd01856 YlqF YlqF. Proteins o 98.1 8.7E-06 1.9E-10 76.3 8.8 99 448-560 2-101 (171)
386 KOG0448|consensus 98.1 3.8E-05 8.2E-10 83.2 13.9 119 389-511 106-275 (749)
387 cd01849 YlqF_related_GTPase Yl 98.1 1.3E-05 2.9E-10 73.7 8.7 84 466-559 1-84 (155)
388 cd05030 calgranulins Calgranul 98.1 1.3E-05 2.8E-10 66.2 7.5 64 5-68 9-81 (88)
389 PRK12288 GTPase RsgA; Reviewed 98.1 5.3E-06 1.1E-10 86.3 6.2 58 394-454 207-270 (347)
390 PRK12289 GTPase RsgA; Reviewed 98.1 5E-06 1.1E-10 86.5 5.9 56 394-453 174-236 (352)
391 PTZ00184 calmodulin; Provision 98.1 1.3E-05 2.8E-10 72.7 7.9 60 5-64 85-146 (149)
392 COG1618 Predicted nucleotide k 98.0 0.00017 3.7E-09 64.9 14.2 147 391-560 4-176 (179)
393 PRK13796 GTPase YqeH; Provisio 98.0 6.7E-06 1.5E-10 86.5 6.1 57 393-452 161-221 (365)
394 cd01851 GBP Guanylate-binding 98.0 3.6E-05 7.8E-10 75.4 10.8 87 390-477 5-104 (224)
395 KOG0460|consensus 98.0 3.2E-05 7E-10 77.1 10.2 190 388-584 50-261 (449)
396 TIGR03597 GTPase_YqeH ribosome 98.0 8.7E-06 1.9E-10 85.5 6.4 58 392-452 154-215 (360)
397 KOG0998|consensus 98.0 2.2E-06 4.7E-11 98.6 1.8 260 2-287 281-550 (847)
398 KOG2484|consensus 98.0 4.1E-06 8.9E-11 85.3 3.5 71 377-451 237-307 (435)
399 PRK10416 signal recognition pa 98.0 5.8E-05 1.3E-09 77.7 11.6 146 390-553 112-303 (318)
400 KOG1487|consensus 98.0 3.2E-05 6.9E-10 74.4 8.7 85 393-479 60-151 (358)
401 TIGR03596 GTPase_YlqF ribosome 98.0 3.3E-05 7.1E-10 78.3 9.6 101 448-562 4-105 (276)
402 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 2.4E-05 5.3E-10 70.8 7.7 77 458-546 5-83 (141)
403 KOG3887|consensus 98.0 4.2E-05 9.1E-10 72.8 9.3 169 393-564 28-206 (347)
404 KOG0463|consensus 97.9 3.7E-05 8E-10 77.4 9.3 117 391-512 132-288 (641)
405 PF00036 EF-hand_1: EF hand; 97.9 1.1E-05 2.3E-10 51.4 3.6 28 5-32 1-28 (29)
406 PRK14974 cell division protein 97.9 3.6E-05 7.8E-10 79.5 8.9 145 391-553 139-323 (336)
407 KOG0467|consensus 97.9 2.2E-05 4.8E-10 85.6 7.6 116 389-508 6-135 (887)
408 KOG0466|consensus 97.9 1E-05 2.2E-10 79.4 4.3 113 442-560 126-241 (466)
409 TIGR03348 VI_IcmF type VI secr 97.9 3.9E-05 8.6E-10 92.4 10.3 115 392-511 111-257 (1169)
410 PF03193 DUF258: Protein of un 97.9 1.2E-05 2.7E-10 73.6 4.5 59 393-454 36-100 (161)
411 TIGR01425 SRP54_euk signal rec 97.9 0.0001 2.2E-09 78.2 11.8 114 392-511 100-253 (429)
412 KOG0044|consensus 97.9 2.1E-05 4.6E-10 74.0 5.8 64 3-66 99-175 (193)
413 TIGR00157 ribosome small subun 97.9 1.9E-05 4.1E-10 78.4 5.7 58 393-454 121-184 (245)
414 KOG0031|consensus 97.9 4.6E-05 9.9E-10 67.3 7.3 65 2-66 99-165 (171)
415 PRK09563 rbgA GTPase YlqF; Rev 97.8 5.9E-05 1.3E-09 76.9 9.1 101 448-562 7-108 (287)
416 KOG0464|consensus 97.8 6.7E-06 1.5E-10 83.5 2.1 120 389-512 34-169 (753)
417 PF13405 EF-hand_6: EF-hand do 97.8 2.5E-05 5.3E-10 50.8 3.6 30 5-34 1-31 (31)
418 PLN02964 phosphatidylserine de 97.8 9.2E-05 2E-09 82.0 10.2 60 3-66 142-207 (644)
419 KOG0037|consensus 97.8 0.00057 1.2E-08 64.4 13.8 143 4-174 57-202 (221)
420 TIGR00064 ftsY signal recognit 97.8 0.00011 2.3E-09 74.2 9.4 96 440-553 154-261 (272)
421 KOG1547|consensus 97.7 0.00027 5.7E-09 67.4 10.5 114 391-510 45-197 (336)
422 cd05024 S-100A10 S-100A10: A s 97.7 0.00019 4E-09 58.8 7.9 62 5-67 9-77 (91)
423 PRK13796 GTPase YqeH; Provisio 97.7 0.00022 4.7E-09 75.2 10.5 93 452-558 57-157 (365)
424 PRK00098 GTPase RsgA; Reviewed 97.7 6.8E-05 1.5E-09 76.8 6.4 58 392-453 164-228 (298)
425 PF00036 EF-hand_1: EF hand; 97.7 6.1E-05 1.3E-09 48.0 3.7 28 39-66 1-28 (29)
426 COG1162 Predicted GTPases [Gen 97.7 6.6E-05 1.4E-09 75.1 5.9 59 393-454 165-229 (301)
427 PF09547 Spore_IV_A: Stage IV 97.6 0.0012 2.6E-08 68.6 14.6 159 390-560 15-234 (492)
428 cd01854 YjeQ_engC YjeQ/EngC. 97.6 9.5E-05 2E-09 75.3 6.5 59 393-454 162-226 (287)
429 PRK12309 transaldolase/EF-hand 97.6 0.00013 2.8E-09 76.7 7.3 55 3-68 333-387 (391)
430 cd03112 CobW_like The function 97.6 0.00021 4.5E-09 66.0 8.0 22 394-415 2-23 (158)
431 KOG0038|consensus 97.6 0.0001 2.2E-09 64.3 5.3 62 5-66 109-177 (189)
432 KOG0037|consensus 97.6 0.00021 4.5E-09 67.3 7.4 63 5-67 125-189 (221)
433 COG3640 CooC CO dehydrogenase 97.6 0.0002 4.3E-09 68.6 7.2 62 443-510 136-198 (255)
434 cd03110 Fer4_NifH_child This p 97.6 0.00098 2.1E-08 62.8 12.1 85 439-538 91-175 (179)
435 PRK13695 putative NTPase; Prov 97.6 0.0013 2.9E-08 61.6 12.8 146 393-560 1-173 (174)
436 PRK12727 flagellar biosynthesi 97.5 0.00059 1.3E-08 73.7 11.0 139 390-548 348-523 (559)
437 PRK14722 flhF flagellar biosyn 97.5 0.00048 1E-08 72.0 10.0 147 390-550 135-322 (374)
438 KOG0030|consensus 97.5 0.00025 5.5E-09 61.7 6.3 62 2-64 86-149 (152)
439 KOG0459|consensus 97.5 0.00012 2.7E-09 74.6 4.8 168 386-553 73-279 (501)
440 KOG4251|consensus 97.5 0.00023 5E-09 67.4 6.3 66 3-68 100-170 (362)
441 PRK11889 flhF flagellar biosyn 97.5 0.00077 1.7E-08 70.2 10.5 143 392-552 241-420 (436)
442 KOG2485|consensus 97.4 0.00012 2.6E-09 72.7 4.3 62 389-451 140-206 (335)
443 PRK01889 GTPase RsgA; Reviewed 97.4 0.00057 1.2E-08 71.7 9.7 84 461-556 109-193 (356)
444 PLN02964 phosphatidylserine de 97.4 0.0004 8.6E-09 77.1 8.2 62 6-67 181-244 (644)
445 cd03115 SRP The signal recogni 97.4 0.00092 2E-08 62.6 9.6 67 440-512 82-154 (173)
446 PRK14721 flhF flagellar biosyn 97.4 0.0011 2.3E-08 70.5 10.9 153 391-561 190-383 (420)
447 KOG0377|consensus 97.4 0.00045 9.9E-09 70.8 7.4 65 4-68 547-617 (631)
448 PRK00771 signal recognition pa 97.3 0.0013 2.8E-08 70.5 11.0 134 391-541 94-266 (437)
449 KOG0044|consensus 97.3 0.00048 1E-08 64.9 6.2 30 121-153 147-176 (193)
450 KOG0036|consensus 97.3 0.0019 4.1E-08 66.2 10.8 112 3-130 13-127 (463)
451 COG3523 IcmF Type VI protein s 97.3 0.00047 1E-08 81.0 7.1 117 390-511 123-270 (1188)
452 cd03114 ArgK-like The function 97.2 0.0012 2.6E-08 60.2 8.2 58 440-508 91-148 (148)
453 KOG3859|consensus 97.2 0.0015 3.2E-08 63.8 8.6 60 391-450 41-104 (406)
454 COG1419 FlhF Flagellar GTP-bin 97.2 0.0021 4.5E-08 67.0 9.9 113 392-511 203-352 (407)
455 PF03266 NTPase_1: NTPase; In 97.2 0.0011 2.5E-08 61.7 7.3 135 394-548 1-163 (168)
456 KOG1955|consensus 97.2 0.00065 1.4E-08 70.5 6.1 66 4-69 231-296 (737)
457 PRK12724 flagellar biosynthesi 97.2 0.00091 2E-08 70.5 7.2 143 392-552 223-402 (432)
458 PF13202 EF-hand_5: EF hand; P 97.1 0.00052 1.1E-08 42.0 3.2 24 6-29 1-24 (25)
459 KOG0036|consensus 97.1 0.00084 1.8E-08 68.7 6.5 65 3-67 81-147 (463)
460 PRK10867 signal recognition pa 97.1 0.003 6.5E-08 67.6 10.9 135 392-542 100-275 (433)
461 PRK12726 flagellar biosynthesi 97.1 0.0009 2E-08 69.5 6.6 142 391-550 205-383 (407)
462 PRK06731 flhF flagellar biosyn 97.1 0.0014 3.1E-08 65.6 7.6 143 391-551 74-253 (270)
463 KOG4273|consensus 97.1 0.0052 1.1E-07 59.0 10.8 162 393-561 5-223 (418)
464 PRK12723 flagellar biosynthesi 97.1 0.0073 1.6E-07 63.8 13.1 143 392-552 174-356 (388)
465 PF08317 Spc7: Spc7 kinetochor 97.1 0.097 2.1E-06 54.3 21.2 79 206-284 172-251 (325)
466 PF00448 SRP54: SRP54-type pro 97.1 0.0038 8.1E-08 59.8 10.0 140 393-550 2-181 (196)
467 PRK05703 flhF flagellar biosyn 97.0 0.0059 1.3E-07 65.5 12.0 152 392-561 221-414 (424)
468 TIGR00959 ffh signal recogniti 97.0 0.0035 7.7E-08 67.0 10.0 91 441-549 183-279 (428)
469 cd02042 ParA ParA and ParB of 96.9 0.0029 6.3E-08 53.7 7.2 82 395-488 2-84 (104)
470 cd02038 FleN-like FleN is a me 96.9 0.0026 5.7E-08 57.3 7.2 107 396-510 4-110 (139)
471 COG5185 HEC1 Protein involved 96.9 0.047 1E-06 56.8 16.7 151 141-303 260-422 (622)
472 cd03111 CpaE_like This protein 96.9 0.0029 6.4E-08 54.1 7.0 101 397-506 5-106 (106)
473 KOG0465|consensus 96.9 0.00066 1.4E-08 72.9 3.6 118 391-512 38-171 (721)
474 PF06858 NOG1: Nucleolar GTP-b 96.9 0.0033 7.1E-08 46.6 6.1 44 464-508 13-58 (58)
475 PF00503 G-alpha: G-protein al 96.8 0.0027 5.9E-08 67.6 7.4 83 423-509 221-315 (389)
476 KOG0034|consensus 96.8 0.012 2.6E-07 55.5 10.6 135 4-152 33-175 (187)
477 PRK14723 flhF flagellar biosyn 96.8 0.0059 1.3E-07 69.2 10.0 155 392-561 185-380 (767)
478 PF10591 SPARC_Ca_bdg: Secrete 96.8 0.001 2.2E-08 57.5 2.9 59 5-63 55-113 (113)
479 KOG2423|consensus 96.8 0.00055 1.2E-08 69.8 1.4 93 381-480 296-390 (572)
480 COG0523 Putative GTPases (G3E 96.8 0.03 6.6E-07 57.6 14.1 22 394-415 3-24 (323)
481 PRK06995 flhF flagellar biosyn 96.7 0.0058 1.3E-07 66.1 9.1 152 392-561 256-448 (484)
482 KOG0469|consensus 96.7 0.0032 7E-08 66.0 6.4 114 392-509 19-162 (842)
483 PF13202 EF-hand_5: EF hand; P 96.7 0.0025 5.3E-08 39.1 3.2 25 40-64 1-25 (25)
484 cd02036 MinD Bacterial cell di 96.6 0.013 2.9E-07 54.7 9.8 65 442-511 64-128 (179)
485 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.011 2.4E-07 48.8 8.2 69 395-477 2-71 (99)
486 PF09726 Macoilin: Transmembra 96.5 0.12 2.6E-06 58.7 18.1 59 226-284 543-601 (697)
487 KOG0046|consensus 96.5 0.0052 1.1E-07 64.7 6.8 64 4-68 19-87 (627)
488 PF07888 CALCOCO1: Calcium bin 96.5 1.5 3.3E-05 47.8 25.2 65 221-288 371-435 (546)
489 cd00009 AAA The AAA+ (ATPases 96.5 0.012 2.7E-07 52.2 8.2 25 392-416 19-43 (151)
490 PF05621 TniB: Bacterial TniB 96.5 0.014 3E-07 58.8 9.1 105 388-506 57-189 (302)
491 cd03222 ABC_RNaseL_inhibitor T 96.5 0.028 6E-07 52.9 10.6 71 389-470 22-95 (177)
492 KOG0995|consensus 96.3 0.27 5.7E-06 53.1 18.1 105 199-303 272-387 (581)
493 PRK11537 putative GTP-binding 96.3 0.047 1E-06 56.3 12.3 23 393-415 5-27 (318)
494 PRK01889 GTPase RsgA; Reviewed 96.3 0.0043 9.4E-08 65.1 4.7 25 391-415 194-218 (356)
495 COG1162 Predicted GTPases [Gen 96.3 0.025 5.3E-07 57.0 9.5 94 455-557 70-164 (301)
496 KOG0161|consensus 96.2 0.31 6.6E-06 60.6 20.3 108 175-284 962-1069(1930)
497 PF13401 AAA_22: AAA domain; P 96.2 0.0035 7.6E-08 55.4 3.1 24 393-416 5-28 (131)
498 KOG1533|consensus 96.2 0.0052 1.1E-07 58.8 4.2 70 441-512 97-178 (290)
499 PF07888 CALCOCO1: Calcium bin 96.2 0.75 1.6E-05 50.1 20.7 33 253-285 280-312 (546)
500 smart00787 Spc7 Spc7 kinetocho 96.2 1.2 2.5E-05 45.8 21.3 41 248-288 224-264 (312)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.2e-36 Score=276.16 Aligned_cols=177 Identities=37% Similarity=0.735 Sum_probs=167.3
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
...+.+||+|+|+.|||||.|+.||+...|...+.+|+|+||..+++.++|..+.++||||||||||++++.+||++||+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe-EEEEcCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGD 546 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~-~~e~Sa~~g~ 546 (593)
||+|||+|+..||.++..|+.++..+...++|.++||||||+.+. +.++.++++.++..++.+ |+++|||++.
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~------~~v~~~~a~~fa~~~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK------RVVSTEEAQEFADELGIPIFLETSAKDST 158 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh------eecCHHHHHHHHHhcCCcceeecccCCcc
Confidence 999999999999999999999999999999999999999999865 679999999999999998 9999999999
Q ss_pred CHHHHHHHHHHHHHhhccccccCC
Q psy8073 547 NILDALIALSRHVYVFIPCVYLKD 570 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~~~~~~~~~ 570 (593)
||++.|..|+..+..+........
T Consensus 159 NVe~~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 159 NVEDAFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred CHHHHHHHHHHHHHHhcccCCCCC
Confidence 999999999999998776654444
No 2
>KOG0078|consensus
Probab=100.00 E-value=7.4e-36 Score=275.53 Aligned_cols=172 Identities=41% Similarity=0.812 Sum_probs=165.1
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
.....+||+++|++|||||+|+.+|..+.|...+..|+|+||..+++.+++..+.++|||||||++|+.++.+||++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
+++|||+++..||+++..|+..|..+.+.++|+|+||||+|+... ++|+.+.++++|..+|+.|+|||||+|.|
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~------R~V~~e~ge~lA~e~G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK------RQVSKERGEALAREYGIKFFETSAKTNFN 161 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc------ccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence 999999999999999999999999999999999999999999763 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccc
Q psy8073 548 ILDALIALSRHVYVFIPC 565 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~~~ 565 (593)
|.+.|..|++.+..+...
T Consensus 162 I~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 162 IEEAFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHHHHhhcch
Confidence 999999999999975544
No 3
>KOG0094|consensus
Probab=100.00 E-value=2.1e-34 Score=260.13 Aligned_cols=170 Identities=38% Similarity=0.680 Sum_probs=159.6
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
..+-+.+|||++|+.+|||||||++|+...|...|.+|+|+||..+++.+.+..+.++||||||||+|+++.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 34556699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhcHHHHHHHHHHHHHHcCC-CCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCC
Q psy8073 467 GVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSG 545 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~-~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g 545 (593)
++|+|||+++..||++..+|++.+...... ++-|++||||.||.+. +.+..+++...++.+++.|+++||+.|
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk------rqvs~eEg~~kAkel~a~f~etsak~g 170 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK------RQVSIEEGERKAKELNAEFIETSAKAG 170 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch------hhhhHHHHHHHHHHhCcEEEEecccCC
Confidence 999999999999999999999999888775 4778899999999875 779999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy8073 546 DNILDALIALSRHVYVF 562 (593)
Q Consensus 546 ~gi~~l~~~L~~~l~~~ 562 (593)
.||..+|..|+..+...
T Consensus 171 ~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 171 ENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCHHHHHHHHHHhccCc
Confidence 99999999998888764
No 4
>KOG0098|consensus
Probab=100.00 E-value=3.9e-34 Score=256.15 Aligned_cols=176 Identities=38% Similarity=0.711 Sum_probs=165.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+|++++|+.|||||+|+.+|+.+.|.+.+..|+|++|..+.+++++..+.++||||+|+|.|++++.+||+.|-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||+++..||..+..|+..+..+...++.|+|+|||+||.. .++|..++++.||+.+|..|+++||+++.||
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~------rR~Vs~EEGeaFA~ehgLifmETSakt~~~V 156 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA------RREVSKEEGEAFAREHGLIFMETSAKTAENV 156 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc------cccccHHHHHHHHHHcCceeehhhhhhhhhH
Confidence 9999999999999999999999999888899999999999975 3789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCC
Q psy8073 549 LDALIALSRHVYVFIPCVYLKD 570 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~~~~~~~ 570 (593)
++.|......+++....-....
T Consensus 157 EEaF~nta~~Iy~~~q~g~~~~ 178 (216)
T KOG0098|consen 157 EEAFINTAKEIYRKIQDGVFDD 178 (216)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 9999999999988766543333
No 5
>KOG0092|consensus
Probab=100.00 E-value=3.5e-34 Score=259.18 Aligned_cols=172 Identities=35% Similarity=0.670 Sum_probs=161.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+++|+.|||||||+.||..+.|.....+|+|.-|..+++.++...+.|.||||||+|+|.++.+.||++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35689999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||+++..||..++.|+..+....+.++-|.|||||+||... +.|..+++..++...+..|+++|||+|.||.
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~------R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER------REVEFEEAQAYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc------ccccHHHHHHHHHhcCCEEEEEecccccCHH
Confidence 9999999999999999999999998887888899999999763 6799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccc
Q psy8073 550 DALIALSRHVYVFIPCVY 567 (593)
Q Consensus 550 ~l~~~L~~~l~~~~~~~~ 567 (593)
++|..|.+.+....+...
T Consensus 157 ~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 157 EIFQAIAEKLPCSDPQER 174 (200)
T ss_pred HHHHHHHHhccCcccccc
Confidence 999999999987665544
No 6
>KOG0080|consensus
Probab=100.00 E-value=1.3e-33 Score=246.00 Aligned_cols=167 Identities=35% Similarity=0.683 Sum_probs=157.1
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|.+|||||||+.+|+.+.|.+...+|+|+||.++.+.++|..+.+.||||||+|+|+.++++||++|.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
|+|||++.+.+|..+..|+.++..++. .++-.|+||||+|...+ +.|.++++.++|+.+++.|++|||++..|
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~------R~V~reEG~kfAr~h~~LFiE~SAkt~~~ 161 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE------RVVDREEGLKFARKHRCLFIECSAKTREN 161 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc------ccccHHHHHHHHHhhCcEEEEcchhhhcc
Confidence 999999999999999999999999875 45777899999997643 77999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8073 548 ILDALIALSRHVYV 561 (593)
Q Consensus 548 i~~l~~~L~~~l~~ 561 (593)
|...|+.|+..+..
T Consensus 162 V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 162 VQCCFEELVEKIIE 175 (209)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998875
No 7
>KOG0087|consensus
Probab=100.00 E-value=3.2e-32 Score=249.71 Aligned_cols=172 Identities=37% Similarity=0.693 Sum_probs=163.1
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
....+.+|||++|++|||||-|+.+|..++|.....+|+|++|...++.+++..+..+||||||||+|+.++.+||++|-
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCC
Q psy8073 467 GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD 546 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~ 546 (593)
++++|||++...+|+++..|+.++..+...+++||+||||+||.+ ++.|+.++++.++...+..|+++||..+.
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~------lraV~te~~k~~Ae~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH------LRAVPTEDGKAFAEKEGLFFLETSALDAT 162 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh------ccccchhhhHhHHHhcCceEEEecccccc
Confidence 999999999999999999999999999999999999999999975 47899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcc
Q psy8073 547 NILDALIALSRHVYVFIP 564 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~~~ 564 (593)
||+.+|..++..++....
T Consensus 163 NVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 163 NVEKAFERVLTEIYKIVS 180 (222)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999999998887776543
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.9e-31 Score=255.20 Aligned_cols=164 Identities=34% Similarity=0.698 Sum_probs=151.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+.|+++|++|||||||+++|+.+.|...+.+|+|.++..+.+.+++..+.++||||||+++|..++..|+++||++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36999999999999999999999998889999999999999999998999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh-CCeEEEEcCCCCCCHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDNILDA 551 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~e~Sa~~g~gi~~l 551 (593)
|++++.||+.+..|+..+......++|+||||||+|+... +.+....+..+++.+ ++.|++|||++|.||.++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~------~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD------REISRQQGEKFAQQITGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc------cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 9999999999999999988776677999999999999643 557888888898875 788999999999999999
Q ss_pred HHHHHHHHHhh
Q psy8073 552 LIALSRHVYVF 562 (593)
Q Consensus 552 ~~~L~~~l~~~ 562 (593)
|.+|++.+.+.
T Consensus 155 F~~l~~~~~~~ 165 (202)
T cd04120 155 FLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 9
>KOG0394|consensus
Probab=99.98 E-value=9.2e-32 Score=240.57 Aligned_cols=173 Identities=31% Similarity=0.593 Sum_probs=158.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
.+..+||+|+|++|||||||+|+++.+.|...+-.|+|.+|..+.+.+++..+.++||||||+|+|.++.-.+|++||++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcC----CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-CeEEEEcCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTE----NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG-AIFMETSSK 543 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~-~~~~e~Sa~ 543 (593)
++|||++++.||+++..|..++..... ...|+||+|||+|+... ..+.++...+..++...| ++|+|+|||
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~----~~r~VS~~~Aq~WC~s~gnipyfEtSAK 161 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG----KSRQVSEKKAQTWCKSKGNIPYFETSAK 161 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC----ccceeeHHHHHHHHHhcCCceeEEeccc
Confidence 999999999999999999999877653 55799999999999653 236789999999998776 689999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccc
Q psy8073 544 SGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
.+.||.++|..+++........
T Consensus 162 ~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 162 EATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred ccccHHHHHHHHHHHHHhccch
Confidence 9999999999999999887653
No 10
>KOG0079|consensus
Probab=99.98 E-value=2.9e-32 Score=234.17 Aligned_cols=167 Identities=39% Similarity=0.710 Sum_probs=157.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+-++.+|+|++|||||||+.+|..+.|.+.|.+|+|+|+..+++.++|..+.++||||||+|+|+.++..|++..+++|
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||+++.+||.++..|+..|...++ .+|-++||||+|+.. .+.|..++++.++...|+.+|++|||.+.|++
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~------RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE 158 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPE------RRVVDTEDARAFALQMGIELFETSAKENENVE 158 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCcc------ceeeehHHHHHHHHhcCchheehhhhhcccch
Confidence 99999999999999999999998887 589999999999875 47799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy8073 550 DALIALSRHVYVFI 563 (593)
Q Consensus 550 ~l~~~L~~~l~~~~ 563 (593)
..|.-|.+.+....
T Consensus 159 ~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 159 AMFHCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 11
>KOG0095|consensus
Probab=99.98 E-value=6.9e-32 Score=232.06 Aligned_cols=166 Identities=37% Similarity=0.749 Sum_probs=155.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
..-+|||+||..|||||.|+++|..+.|++..+.|+|++|..+++.++|..+.++||||||+|+|++++.+||+.|+++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||+++..||..+..|+.+|..+....+--|+||||+|+.+. +.++...++.+++.....|+++||+...||+
T Consensus 85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr------revp~qigeefs~~qdmyfletsakea~nve 158 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR------REVPQQIGEEFSEAQDMYFLETSAKEADNVE 158 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh------hhhhHHHHHHHHHhhhhhhhhhcccchhhHH
Confidence 9999999999999999999999999887888999999999764 6799999999998877779999999999999
Q ss_pred HHHHHHHHHHHh
Q psy8073 550 DALIALSRHVYV 561 (593)
Q Consensus 550 ~l~~~L~~~l~~ 561 (593)
.+|..|+-.+..
T Consensus 159 ~lf~~~a~rli~ 170 (213)
T KOG0095|consen 159 KLFLDLACRLIS 170 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999988765544
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.98 E-value=1.4e-30 Score=248.01 Aligned_cols=168 Identities=31% Similarity=0.587 Sum_probs=154.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|+.+.|...+.+|+|.++....+.+++..+.+.||||+|+++|..++..+++.||++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35589999999999999999999999888888889999998888999998999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.||..+..|++.+....+ ++|+||||||+||... +.+..++++.+++..++.|++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~------~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFK------RQVATEQAQAYAERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhc------cCCCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 99999999999999999999977654 6999999999999653 4578889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q psy8073 550 DALIALSRHVYVFIP 564 (593)
Q Consensus 550 ~l~~~L~~~l~~~~~ 564 (593)
++|.+|++.+..+..
T Consensus 157 ~~F~~l~~~i~~~~~ 171 (189)
T cd04121 157 ESFTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998876555
No 13
>KOG0093|consensus
Probab=99.97 E-value=2.4e-31 Score=228.37 Aligned_cols=169 Identities=37% Similarity=0.715 Sum_probs=159.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
-...+|+.|+|+..||||||+.++++..|....-.|+|++|..+++.-....+.+++|||+|+|+|+.++-.|+++|+++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 45668999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||+++..||..+..|.-.|+.++-.++|+|+||||||+.+. +.++.+.+..++..+|..|+++|||.+.||
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e------Rvis~e~g~~l~~~LGfefFEtSaK~NinV 171 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE------RVISHERGRQLADQLGFEFFETSAKENINV 171 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc------eeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence 99999999999999999999999999899999999999999765 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy8073 549 LDALIALSRHVYVFI 563 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~ 563 (593)
..+|+.|+..+-+.+
T Consensus 172 k~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 172 KQVFERLVDIICDKM 186 (193)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887643
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=5.3e-30 Score=241.37 Aligned_cols=166 Identities=34% Similarity=0.568 Sum_probs=146.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+++|++|||||||+.+|+.+.|...+.+|+|.++ .+.+.+++..+.+.||||+|+++|..++..++++||++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999888999998776 456778898999999999999999999999999999999999
Q ss_pred eCCChhcHHHH-HHHHHHHHHHcCCCCcEEEEEeCCCCCCccc----cccccccCHHHHHHHHHHhCC-eEEEEcCCCCC
Q psy8073 473 DVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRADAQ----AKGVKCIDREVGEKLAQQYGA-IFMETSSKSGD 546 (593)
Q Consensus 473 D~~~~~s~~~~-~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~----~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~ 546 (593)
|++++.||+.+ ..|+..+....+ ++|+||||||+||..... ....+.+..+++..+++.+++ .|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 679999987754 699999999999965311 112245889999999999998 69999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8073 547 NILDALIALSRHVY 560 (593)
Q Consensus 547 gi~~l~~~L~~~l~ 560 (593)
||+++|..+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 15
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1e-29 Score=237.75 Aligned_cols=164 Identities=35% Similarity=0.751 Sum_probs=150.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.+||+|+|++|||||||+++|+++.|...+.+|+|.++..+.+.+++..+.+.||||||+++|...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999998888888999999888888999889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
||++++.+|..+..|+..+......++|+++|+||+|+... +.+..+.+..+++..++.+++|||++|.||.++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ------RDVTYEEAKQFADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999999988776667999999999999654 446778888899989999999999999999999
Q ss_pred HHHHHHHHHh
Q psy8073 552 LIALSRHVYV 561 (593)
Q Consensus 552 ~~~L~~~l~~ 561 (593)
|.+|++.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 16
>KOG0086|consensus
Probab=99.97 E-value=1.7e-30 Score=224.39 Aligned_cols=171 Identities=36% Similarity=0.689 Sum_probs=160.2
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
....-+|++|+|+.|+|||.|+++|+.+.|....+.|+|++|-.+.+++.+..+.++||||||+|+|++.++.||++|-+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
.++|||+++.++|+.+..|+..+..+.+.++-||++|||.||... +.|+..++..++......+.++||++|+|
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~------R~VtflEAs~FaqEnel~flETSa~TGeN 158 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE------REVTFLEASRFAQENELMFLETSALTGEN 158 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh------hhhhHHHHHhhhcccceeeeeeccccccc
Confidence 999999999999999999999999999989999999999999765 77999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy8073 548 ILDALIALSRHVYVFIP 564 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~~ 564 (593)
|++.|...++.+..+..
T Consensus 159 VEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 159 VEEAFLKCARTILNKIE 175 (214)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999988887776543
No 17
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=7.7e-30 Score=241.76 Aligned_cols=168 Identities=24% Similarity=0.486 Sum_probs=147.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+++|++|||||||+++|+.+.|...+.+|++.++. +.+.+++..+.+.||||+|+++|..++..++++||++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45689999999999999999999999999999999987664 67888999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHH-HHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEc
Q psy8073 470 LLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETS 541 (593)
Q Consensus 470 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~S 541 (593)
+|||++++.||..+ ..|+..+....+ ++|+||||||+||...... ...+.+..+++..+++.+++ .|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 789999988765 5899999999999642110 11245889999999999996 899999
Q ss_pred CCCCCC-HHHHHHHHHHHH
Q psy8073 542 SKSGDN-ILDALIALSRHV 559 (593)
Q Consensus 542 a~~g~g-i~~l~~~L~~~l 559 (593)
|++|.| |.++|..+++..
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999988754
No 18
>KOG0091|consensus
Probab=99.97 E-value=1.7e-30 Score=227.04 Aligned_cols=170 Identities=39% Similarity=0.680 Sum_probs=155.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEE-CCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV-DERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~-~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
...++++++|++-||||||+..|+.+.|+....||+|+||....+.+ +|..+.++||||||+|+|++++++||+++=++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 34689999999999999999999999999999999999999888776 56679999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD 546 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~ 546 (593)
++|||+++..||+.+..|+.+...... ..+-+++||+|+||... ++|+.+++++++..+|..|+++||++|.
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq------RqVt~EEaEklAa~hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ------RQVTAEEAEKLAASHGMAFVETSAKNGC 159 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh------ccccHHHHHHHHHhcCceEEEecccCCC
Confidence 999999999999999999998877654 33456799999999754 8899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccc
Q psy8073 547 NILDALIALSRHVYVFIPC 565 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~~~~ 565 (593)
||++.|..|++.+.....+
T Consensus 160 NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 160 NVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887666
No 19
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.5e-29 Score=242.81 Aligned_cols=172 Identities=35% Similarity=0.592 Sum_probs=151.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC-CeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD-ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~-~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
+||+|+|++|||||||+++|+++.|...+.+|+|.++....+.++ +..+.+.||||||+++|..++..++++||++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888899999999988888888 7789999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHc----CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-CeEEEEcCCCCC
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVT----ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG-AIFMETSSKSGD 546 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~----~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~-~~~~e~Sa~~g~ 546 (593)
||++++.+|..+..|+..+.... ...+|+|||+||+|+... +.+..+.+..++..++ +.+++|||++|.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~e~Sak~~~ 154 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR------LAKDGEQMDQFCKENGFIGWFETSAKEGI 154 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc------cccCHHHHHHHHHHcCCceEEEEeCCCCC
Confidence 99999999999999998887542 256899999999999642 3467788899999988 689999999999
Q ss_pred CHHHHHHHHHHHHHhhccccccCC
Q psy8073 547 NILDALIALSRHVYVFIPCVYLKD 570 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~~~~~~~~~ 570 (593)
||+++|.+|++.+...........
T Consensus 155 ~v~e~f~~l~~~l~~~~~~~~~~~ 178 (201)
T cd04107 155 NIEEAMRFLVKNILANDKNLQQAE 178 (201)
T ss_pred CHHHHHHHHHHHHHHhchhhHhhc
Confidence 999999999999887654444333
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=3.7e-29 Score=244.62 Aligned_cols=170 Identities=25% Similarity=0.435 Sum_probs=149.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+|+|++|||||||+++|+.+.|...+.+|+|.++. ..+.+++..+.+.||||+|+++|..++..++++||++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 4689999999999999999999999999999999988775 467889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHH-HHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEcC
Q psy8073 471 LYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETSS 542 (593)
Q Consensus 471 v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~Sa 542 (593)
|||++++.||..+ ..|+..+....+ ++|+||||||+||...... ...+.|..+++..+++.+++ .|++|||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 9999999999985 789999987664 5899999999999642110 11256889999999999998 6999999
Q ss_pred CCCC-CHHHHHHHHHHHHHhh
Q psy8073 543 KSGD-NILDALIALSRHVYVF 562 (593)
Q Consensus 543 ~~g~-gi~~l~~~L~~~l~~~ 562 (593)
++|. ||+++|..++..+.+.
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9998 8999999999987764
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.2e-29 Score=238.07 Aligned_cols=165 Identities=25% Similarity=0.500 Sum_probs=145.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+++|++|||||||+++|+++.|...+.+|++.++. +.+.+++..+.+.||||||+++|..+...++++||++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 69999999999999999999999998889999887764 67888999999999999999999999999999999999999
Q ss_pred eCCChhcHHHH-HHHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhCC-eEEEEcCCC
Q psy8073 473 DVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGA-IFMETSSKS 544 (593)
Q Consensus 473 D~~~~~s~~~~-~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~ 544 (593)
|++++.||+.+ ..|+..+....+ ++|+|+||||+||..... ....+.+..+++..+++.+++ .|++|||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 789999988765 589999999999964211 011245889999999999997 799999999
Q ss_pred CCC-HHHHHHHHHHHH
Q psy8073 545 GDN-ILDALIALSRHV 559 (593)
Q Consensus 545 g~g-i~~l~~~L~~~l 559 (593)
|.| |.++|..+++..
T Consensus 160 ~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 160 SEKSVRDIFHVATMAC 175 (178)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 995 999999998853
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=3.5e-29 Score=235.62 Aligned_cols=164 Identities=31% Similarity=0.534 Sum_probs=147.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.+||+|+|++|||||||+++|+.+.|...+.+|.|..+ ...+.+++..+.+.||||||+++|..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998888888987555 45677888889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
||++++.||..+..|+..+.... ..++|+|+|+||+|+... +.+..+.+..+++..+++|++|||++|.||++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~------~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ------RQVTTEEGRNLAREFNCPFFETSAALRHYIDD 154 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc------CccCHHHHHHHHHHhCCEEEEEecCCCCCHHH
Confidence 99999999999999988887754 356999999999998653 45788889999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy8073 551 ALIALSRHVYVF 562 (593)
Q Consensus 551 l~~~L~~~l~~~ 562 (593)
+|.+|++.+...
T Consensus 155 ~f~~l~~~~~~~ 166 (172)
T cd04141 155 AFHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
No 23
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=3.5e-29 Score=233.03 Aligned_cols=160 Identities=41% Similarity=0.795 Sum_probs=147.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+++|++|||||||+++|+.+.|...+.+|.|.++....+.+++..+.+.||||+|+++|..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999988888999999998888999988899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.||..+..|+..+.......+|+++|+||+|+... +.+..+++..+++.++++|++|||++|.||.++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~------~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK------RQVGDEQGNKLAKEYGMDFFETSACTNSNIKESF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999998777667999999999999653 4577888999999999999999999999999999
Q ss_pred HHHHHH
Q psy8073 553 IALSRH 558 (593)
Q Consensus 553 ~~L~~~ 558 (593)
.+|++.
T Consensus 155 ~~l~~~ 160 (161)
T cd04117 155 TRLTEL 160 (161)
T ss_pred HHHHhh
Confidence 999864
No 24
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=4.2e-29 Score=237.09 Aligned_cols=167 Identities=25% Similarity=0.431 Sum_probs=146.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+++|++|||||||+++|+.+.|...+.+|.|.++..+.+.+++..+.+.||||+|+++|..++..++++||++|+||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999999998889999998899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.+|..+..|+..+.......+| |+||||+|+.......... .....+..+++..++.+++|||++|.||+++|
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~-~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf 158 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQE-EITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhh-hhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999877665567 6789999996421111111 22456778888889999999999999999999
Q ss_pred HHHHHHHHh
Q psy8073 553 IALSRHVYV 561 (593)
Q Consensus 553 ~~L~~~l~~ 561 (593)
.+|++.+.+
T Consensus 159 ~~l~~~l~~ 167 (182)
T cd04128 159 KIVLAKAFD 167 (182)
T ss_pred HHHHHHHHh
Confidence 999998875
No 25
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=6.6e-29 Score=232.52 Aligned_cols=165 Identities=41% Similarity=0.824 Sum_probs=150.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+|+|++|||||||+++|+++.|...+.+|.|.++....+.+++..+.++||||||++++..++..++++||++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999999988899999999988888899988999999999999998889999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
|||++++.+|..+..|+..+......++|+++|+||+|+... +.+..+.+..++..+++++++|||++|.||.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK------RVVSKEEGEALADEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc------cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999998876667999999999999753 34566778888888899999999999999999
Q ss_pred HHHHHHHHHHh
Q psy8073 551 ALIALSRHVYV 561 (593)
Q Consensus 551 l~~~L~~~l~~ 561 (593)
+|.+|++.+..
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 26
>KOG0083|consensus
Probab=99.97 E-value=4.6e-31 Score=222.78 Aligned_cols=167 Identities=40% Similarity=0.753 Sum_probs=153.8
Q ss_pred EEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCC
Q psy8073 397 FAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVT 475 (593)
Q Consensus 397 ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~ 475 (593)
++|++++|||.|+-+|..+.|. +...+|+|+||..+.+.+++..+.+++|||+|+|+|++.+..||+.||+++++||++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999998877554 456789999999999999999999999999999999999999999999999999999
Q ss_pred ChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q psy8073 476 NERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIAL 555 (593)
Q Consensus 476 ~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L 555 (593)
+..||++++.|+..|..+....+.++++|||||+... +.|.+++++++++.|+++|+++||++|-||+-.|..|
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e------r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE------RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh------hccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence 9999999999999999999888999999999999764 6799999999999999999999999999999999999
Q ss_pred HHHHHhhccccccC
Q psy8073 556 SRHVYVFIPCVYLK 569 (593)
Q Consensus 556 ~~~l~~~~~~~~~~ 569 (593)
+..+.+...-.++.
T Consensus 156 a~~l~k~~~~~~~~ 169 (192)
T KOG0083|consen 156 AEELKKLKMGAPPE 169 (192)
T ss_pred HHHHHHhccCCCCC
Confidence 99998765544443
No 27
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=7.5e-29 Score=231.69 Aligned_cols=163 Identities=36% Similarity=0.728 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|.++.|...+.+|.|.++....+..++..+.+.||||||++++..++..+++++|++|+||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888899998888888888888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.+|+.+..|+..+.......+|+++|+||+|+... +.+..+....++...++++++|||++|.|+.++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE------RVVSSERGRQLADQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc------cccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999998777667999999999999653 3456677788888888999999999999999999
Q ss_pred HHHHHHHHh
Q psy8073 553 IALSRHVYV 561 (593)
Q Consensus 553 ~~L~~~l~~ 561 (593)
.+|+..+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987653
No 28
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=5.4e-29 Score=238.38 Aligned_cols=168 Identities=28% Similarity=0.515 Sum_probs=146.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.+||+++|++|||||||+++|+.+.|...+.+|+|..+. ..+.+++..+.+.||||||+++|..++..++++||++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999998889999986654 5567889899999999999999999999999999999999
Q ss_pred EeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhC-CeEEEEcCC
Q psy8073 472 YDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYG-AIFMETSSK 543 (593)
Q Consensus 472 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~-~~~~e~Sa~ 543 (593)
||++++.||+.+. .|...+....+ ++|+||||||+||..... ....+.+..+++..+++.++ +.|++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 59888876544 699999999999965321 01124577888999999998 489999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8073 544 SGDNILDALIALSRHVYV 561 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~ 561 (593)
+|.||.++|.+|++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998864
No 29
>KOG0088|consensus
Probab=99.97 E-value=3e-30 Score=224.14 Aligned_cols=170 Identities=36% Similarity=0.635 Sum_probs=159.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
+...+|||++|..-||||||+-+++.+.|.....+|+-..|..+.+++.+....+.||||||+|+|..+-+.||++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45679999999999999999999999999999889988899999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++|+.||+.+..|..++..+.+..+-++|||||+||... +.|+..++..++...|+.|+++||+.+.||
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee------R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE------RQVTRQEAEAYAESVGALYMETSAKDNVGI 163 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh------hhhhHHHHHHHHHhhchhheecccccccCH
Confidence 99999999999999999999999999888999999999999754 679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy8073 549 LDALIALSRHVYVFIP 564 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~ 564 (593)
.++|..|...+.++..
T Consensus 164 ~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 164 SELFESLTAKMIEHSS 179 (218)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988777653
No 30
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=1.4e-28 Score=229.96 Aligned_cols=164 Identities=38% Similarity=0.796 Sum_probs=149.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.+||+|+|++|||||||+++|+++.+...+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999988888888999999888898998889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
||++++.+|..+..|+..+......+.|+++|+||+|+... +.+....+..++..++++++++||++|.||.++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK------RVVDYSEAQEFADELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc------cCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999999998876567899999999998653 346677888889889999999999999999999
Q ss_pred HHHHHHHHHh
Q psy8073 552 LIALSRHVYV 561 (593)
Q Consensus 552 ~~~L~~~l~~ 561 (593)
|.+|++.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=1.9e-28 Score=232.17 Aligned_cols=166 Identities=39% Similarity=0.689 Sum_probs=147.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC----------CeeEEEEEEecCCchhhhhhhHh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD----------ERNVALQLWDTAGQERFRSMTKN 460 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~----------~~~~~~~l~DTaG~e~~~~~~~~ 460 (593)
+.+||+++|++|||||||+++|+++.|...+.+|+|.++....+.+. +..+.+.||||||+++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999999999999998887777664 45688999999999999999999
Q ss_pred hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEE
Q psy8073 461 YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFME 539 (593)
Q Consensus 461 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e 539 (593)
+++++|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+... +.+..+.+..++..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~e 156 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ------RQVSEEQAKALADKYGIPYFE 156 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc------CccCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999999999999887654 346899999999999653 446777888999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 540 TSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
|||++|.|++++|.+|++.+.++
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999877653
No 32
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=2.7e-28 Score=233.62 Aligned_cols=165 Identities=42% Similarity=0.798 Sum_probs=148.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
+||+|+|++|||||||+++|+.+.+. +.+.+|.+.++....+.+++..+.+.||||||+++|...+..+++.||++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 36778888888888888999889999999999999998899999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
||++++.+|..+..|+..+......++|+++|+||+|+... +.+....+..++..++++|++|||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~------~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE------RVVKREDGERLAKEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc------cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999998887777999999999999643 346667788888889999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy8073 552 LIALSRHVYVFI 563 (593)
Q Consensus 552 ~~~L~~~l~~~~ 563 (593)
|.+|++.+....
T Consensus 155 ~~~l~~~~~~~~ 166 (191)
T cd04112 155 FTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 33
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=2.2e-28 Score=228.27 Aligned_cols=162 Identities=28% Similarity=0.645 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|++..+...+.+|+|.++..+.+.+++..+.+.||||||++.|..++..+++.||++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988899999999998889999998999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcC-----CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTE-----NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~-----~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
|++++.++..+..|+..+..... .++|+++|+||+|+... ..+.......++...++++++|||++|.|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 154 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH------RAVSEDEGRLWAESKGFKYFETSACTGEG 154 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc------cccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999999999999887654 46899999999999642 34667777788888889999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8073 548 ILDALIALSRHVY 560 (593)
Q Consensus 548 i~~l~~~L~~~l~ 560 (593)
+.+++.+|.+.+.
T Consensus 155 i~~l~~~l~~~l~ 167 (168)
T cd04119 155 VNEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 34
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=2.5e-28 Score=238.29 Aligned_cols=164 Identities=34% Similarity=0.532 Sum_probs=148.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECC-eeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDE-RNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~-~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
+||+|+|++|||||||+++|+++.|...+.+|+|.++..+.+.+++ ..+.+.||||||++.+..++..+++.||++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999889999999999888888865 478999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcC---CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTE---NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~---~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
||++++.+|..+..|+..+..... .++|+|+|+||+|+... +.+....+..++..+++.+++|||++|.||
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~------~~v~~~~~~~~~~~~~~~~~~iSAktg~gv 154 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN------RTVKDDKHARFAQANGMESCLVSAKTGDRV 154 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc------cccCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 999999999999999999987653 34789999999999643 447778888999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy8073 549 LDALIALSRHVYVF 562 (593)
Q Consensus 549 ~~l~~~L~~~l~~~ 562 (593)
+++|.+|++.+...
T Consensus 155 ~~lf~~l~~~l~~~ 168 (215)
T cd04109 155 NLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988763
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=2.2e-28 Score=227.55 Aligned_cols=160 Identities=35% Similarity=0.632 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+.+.|...+.+|.+ +...+.+.+++..+.+.||||||+++|..++..+++++|++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777778876 555677888888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
|++++.+|..+..|+..+.... ..++|+|+|+||+|+... +.+....+..++..+++++++|||++|.|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE------RVVSREEGQALARQWGCPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999998887754 346899999999999653 335666777788888899999999999999999
Q ss_pred HHHHHHHH
Q psy8073 552 LIALSRHV 559 (593)
Q Consensus 552 ~~~L~~~l 559 (593)
|.+|++.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998754
No 36
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=3.3e-28 Score=227.10 Aligned_cols=162 Identities=37% Similarity=0.712 Sum_probs=148.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.+||+|+|++|||||||+++|+++.+...+.+|.|.++..+.+.+++..+.+.||||||++++..++..+++.|+++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999988888889999999999999998888999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
||++++.++..+..|+..+......++|+++|+||+|+... +.+..+....++...++.+++|||++|.|+.++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL------RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999999998887767999999999999653 446677788888888899999999999999999
Q ss_pred HHHHHHHH
Q psy8073 552 LIALSRHV 559 (593)
Q Consensus 552 ~~~L~~~l 559 (593)
+++|...+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=3.6e-28 Score=226.06 Aligned_cols=161 Identities=34% Similarity=0.695 Sum_probs=152.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
||+|+|+++||||||+++|+++.|...+.+|.|.++..+.+.+++..+.+.||||+|+++|..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q psy8073 474 VTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALI 553 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~ 553 (593)
++++.||..+..|+..+....+.++|++|||||+|+... +.++.++++.+++.++++|++|||++|.||.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~------~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDE------REVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG------SSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeecccccccc------ccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999999998877999999999998753 56888999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8073 554 ALSRHVY 560 (593)
Q Consensus 554 ~L~~~l~ 560 (593)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998874
No 38
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=5.7e-28 Score=226.43 Aligned_cols=165 Identities=38% Similarity=0.754 Sum_probs=149.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+|+|++|||||||++++++..+...+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|++|+
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 34899999999999999999999998888888899999998999999988999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
|||++++.++..+..|+..+......++|+|||+||+|+... ..+..+.+..++...++.++++||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR------REVSYEEGEAFAKEHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc------cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999998876667999999999999743 34667778888888899999999999999999
Q ss_pred HHHHHHHHHHh
Q psy8073 551 ALIALSRHVYV 561 (593)
Q Consensus 551 l~~~L~~~l~~ 561 (593)
+|.++++.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 39
>KOG0081|consensus
Probab=99.96 E-value=4e-30 Score=223.52 Aligned_cols=171 Identities=37% Similarity=0.667 Sum_probs=155.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC---------CeeEEEEEEecCCchhhhhhhHh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD---------ERNVALQLWDTAGQERFRSMTKN 460 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~---------~~~~~~~l~DTaG~e~~~~~~~~ 460 (593)
..-||.+.+|++|||||||+.+++.+.|.....+|+|+||..+.+.++ +..+.++||||||+|+|++++-.
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 455788999999999999999999999999999999999999998763 33588999999999999999999
Q ss_pred hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEE
Q psy8073 461 YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFME 539 (593)
Q Consensus 461 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e 539 (593)
+|+.|-++|++||+++..||.+++.|+..+..+.- .+..||++|||+||.+. +.|....+..++.+++.|||+
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~------R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ------RVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh------hhhhHHHHHHHHHHhCCCeee
Confidence 99999999999999999999999999999877653 45679999999999764 789999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhhcccc
Q psy8073 540 TSSKSGDNILDALIALSRHVYVFIPCV 566 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~l~~~~~~~ 566 (593)
+||-+|.||++.++.|...+.++..+.
T Consensus 161 TSA~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887664
No 40
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=4.5e-28 Score=236.80 Aligned_cols=164 Identities=27% Similarity=0.503 Sum_probs=146.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++++.+.|...+.+|+|.++....+.+++..+.+.||||+|+++|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56699999999999999999999999988899999999999888888888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.+|..+..|+..+.... .++|++|||||+|+... .+....+ .++...++.|++|||++|.||.
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-------~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-------QVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-------cCCHHHH-HHHHhcCCEEEEcCCCCCCCHH
Confidence 9999999999999999999998765 46999999999999532 2334444 6677788899999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy8073 550 DALIALSRHVYVF 562 (593)
Q Consensus 550 ~l~~~L~~~l~~~ 562 (593)
++|.+|++.+...
T Consensus 162 ~~f~~l~~~~~~~ 174 (219)
T PLN03071 162 KPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988754
No 41
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=5.1e-28 Score=227.24 Aligned_cols=164 Identities=32% Similarity=0.614 Sum_probs=145.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
||+++|++|||||||+++|+.+.|...+.+|+|.++..+.+.+++..+.+.||||||+++|..++..+++.||++|+|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999999988888899988999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 474 VTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
++++.++..+..|+..+... .+..+|+|+|+||+|+..... ..+....+..++..+++.+++|||++|.||+++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ----YALMEQDAIKLAAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc----ccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999987654 344578999999999964311 1234566777888888999999999999999999
Q ss_pred HHHHHHHHh
Q psy8073 553 IALSRHVYV 561 (593)
Q Consensus 553 ~~L~~~l~~ 561 (593)
..|++.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999998864
No 42
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=5.8e-28 Score=235.72 Aligned_cols=168 Identities=37% Similarity=0.683 Sum_probs=154.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+++|+++.+...+.+|+|.++..+.+.+++..+.+.||||+|+++|..++..+++.+|++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34668999999999999999999999988878889999999999999999899999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.+|+.+..|+..+......++|+++|+||+|+... +.+..+.+..++..++++|++|||++|.|+
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~------~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL------RSVAEEDGQALAEKEGLSFLETSALEATNV 162 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccc------cCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999998887778999999999999643 457778888999889999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy8073 549 LDALIALSRHVYVF 562 (593)
Q Consensus 549 ~~l~~~L~~~l~~~ 562 (593)
+++|.+|+..+...
T Consensus 163 ~~lf~~l~~~i~~~ 176 (216)
T PLN03110 163 EKAFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 43
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=6.4e-28 Score=230.44 Aligned_cols=167 Identities=38% Similarity=0.691 Sum_probs=151.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+++.|...+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.||++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988778899999998888999988899999999999999989999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.+|..+..|+..+.......+|+|+|+||+|+... +.+....+..++...++++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN------KVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc------ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999998877667899999999999743 3466777788888888999999999999999999
Q ss_pred HHHHHHHHhhccc
Q psy8073 553 IALSRHVYVFIPC 565 (593)
Q Consensus 553 ~~L~~~l~~~~~~ 565 (593)
.+|++.+.++...
T Consensus 155 ~~l~~~~~~~~~~ 167 (188)
T cd04125 155 ILLVKLIIKRLEE 167 (188)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998875443
No 44
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=4.2e-28 Score=228.86 Aligned_cols=164 Identities=26% Similarity=0.461 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+.+.|...+.+|.|.++. +.+.+++..+.+.||||+|+++|..++..++++||++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888999887664 45678888899999999999999888999999999999999
Q ss_pred eCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhC-CeEEEEcCCC
Q psy8073 473 DVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYG-AIFMETSSKS 544 (593)
Q Consensus 473 D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~-~~~~e~Sa~~ 544 (593)
|++++.+|..+.. |+..+....+ ++|+||||||+|+..... ....+.+..+++..+++..+ +.|++|||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 9999999999974 9988877654 589999999999864311 01125678889999998887 5899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy8073 545 GDNILDALIALSRH 558 (593)
Q Consensus 545 g~gi~~l~~~L~~~ 558 (593)
|.||.++|..++..
T Consensus 160 g~~v~~~f~~~~~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998874
No 45
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=5.4e-28 Score=225.48 Aligned_cols=162 Identities=31% Similarity=0.627 Sum_probs=142.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.+||+|+|++|||||||+++++.+.+...+.+|++..+ .+.+.+++..+.+.||||||+++|..++..+++.+|++|+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999999888777888887655 46777888889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
||++++.+|..+..|+..+.... ..++|+++|+||+|+... ..+....+..+++.+++++++|||++|.|+.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE------RVVGKEQGQNLARQWGCAFLETSAKAKINVNE 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc------cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988887653 356999999999999753 33566667788888899999999999999999
Q ss_pred HHHHHHHHHH
Q psy8073 551 ALIALSRHVY 560 (593)
Q Consensus 551 l~~~L~~~l~ 560 (593)
+|.+|++.+.
T Consensus 154 ~~~~l~~~l~ 163 (164)
T cd04175 154 IFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999987663
No 46
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=4.2e-28 Score=232.09 Aligned_cols=165 Identities=28% Similarity=0.520 Sum_probs=144.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
||+|+|++|||||||+++|+.+.|...+.+|.|..+ .+.+.+++..+.++||||||+++|..++..+++.||++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988888888877555 4556788888899999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHcC---CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 474 VTNERSFNSVKNWVEAVEEVTE---NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~~~---~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
++++.||..+..|+..+..... .++|+|+|+||+|+... +.+....+..++..+++.|++|||++|.||.+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~------~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE------REVSTEEGAALARRLGCEFIEASAKTNVNVER 153 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc------CccCHHHHHHHHHHhCCEEEEecCCCCCCHHH
Confidence 9999999999999998876643 46899999999999643 44667777888888899999999999999999
Q ss_pred HHHHHHHHHHhhccc
Q psy8073 551 ALIALSRHVYVFIPC 565 (593)
Q Consensus 551 l~~~L~~~l~~~~~~ 565 (593)
+|.+|++.+..+...
T Consensus 154 l~~~l~~~l~~~~~~ 168 (190)
T cd04144 154 AFYTLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999988765444
No 47
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.1e-27 Score=232.82 Aligned_cols=169 Identities=38% Similarity=0.703 Sum_probs=150.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEE-CCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV-DERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~-~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
.+||+|+|++|||||||+++|+++.+...+.+|+|.++..+.+.+ ++..+.++||||+|+++|..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999999888888899999998888877 4567899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|||++++.+|..+..|+..+..... ..+|++||+||+|+... +.+....+..+++.+++.|++|||++|.||.
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~------~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~ 155 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQ------RQVTREEAEKLAKDLGMKYIETSARTGDNVE 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccc------cccCHHHHHHHHHHhCCEEEEEeCCCCCCHH
Confidence 9999999999999999998876543 45789999999999753 4477788888999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccc
Q psy8073 550 DALIALSRHVYVFIPCV 566 (593)
Q Consensus 550 ~l~~~L~~~l~~~~~~~ 566 (593)
++|.+|++.+..+....
T Consensus 156 e~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 156 EAFELLTQEIYERIKRG 172 (211)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999888775544
No 48
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=8.2e-28 Score=224.55 Aligned_cols=162 Identities=40% Similarity=0.752 Sum_probs=145.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+|+|++|||||||+++|..+.+...+.+|.|.++..+.+.+++..+.+.||||||++.|...+..+++.+|++|+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999998888888999989988889899888899999999999999889999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~gi~ 549 (593)
|||++++.+|..+..|+..+......++|+|+|+||+|+... +.+....+..++..+++ .+++|||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ------REVLFEEACTLAEKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc------cccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence 999999999999999999998876667999999999999753 34566677788888876 68999999999999
Q ss_pred HHHHHHHHH
Q psy8073 550 DALIALSRH 558 (593)
Q Consensus 550 ~l~~~L~~~ 558 (593)
+++.+|++.
T Consensus 156 ~~~~~l~~~ 164 (165)
T cd01864 156 EAFLLMATE 164 (165)
T ss_pred HHHHHHHHh
Confidence 999999875
No 49
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=7.2e-28 Score=230.30 Aligned_cols=167 Identities=29% Similarity=0.585 Sum_probs=147.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+|+|++|||||||+++|+++.|...+.+|.|.++ .+.+.+++..+.+.||||||+++|..++..+++.+|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 458999999999999999999999988888888887666 5677889988999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|||++++.+|..+..|+..+.... ..++|+++|+||+|+... +.+....+..++..+++++++|||++|.||.
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~------~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~ 156 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE------RQVSTGEGQELAKSFGIPFLETSAKQRVNVD 156 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------cccCHHHHHHHHHHhCCEEEEeeCCCCCCHH
Confidence 999999999999999998887654 346899999999998643 3466677778888888999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q psy8073 550 DALIALSRHVYVFIP 564 (593)
Q Consensus 550 ~l~~~L~~~l~~~~~ 564 (593)
++|.+|++.+.+..+
T Consensus 157 ~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 157 EAFYELVREIRKYLK 171 (189)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876544
No 50
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=1.1e-27 Score=231.05 Aligned_cols=165 Identities=38% Similarity=0.664 Sum_probs=149.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+|+|++|||||||+++|+++.|...+.+|+|.++....+.+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46899999999999999999999999888889999999988888888888899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
|||++++.+|..+..|+..+..... .+|++||+||+|+... ..+....+..++...++.|++|||++|.||.+
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPER------KVVETEDAYKFAGQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccc------cccCHHHHHHHHHHcCCEEEEEECCCCcCHHH
Confidence 9999999999999999999877654 5899999999999643 34566778888888899999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy8073 551 ALIALSRHVYVF 562 (593)
Q Consensus 551 l~~~L~~~l~~~ 562 (593)
+|.+|.+.+...
T Consensus 158 lf~~l~~~~~~~ 169 (199)
T cd04110 158 MFNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 51
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=7.5e-28 Score=234.15 Aligned_cols=171 Identities=26% Similarity=0.438 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+.+.|.. +.+|+|.++..... ..+.+.||||||+++|..++..+++.||++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 57788877765443 3578999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc-------------cccccccCHHHHHHHHHHhC-----
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ-------------AKGVKCIDREVGEKLAQQYG----- 534 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~-------------~~~~~~v~~~~~~~l~~~~~----- 534 (593)
|++++.+|..+..|+..+......++|+||||||+|+..... ....+.+..+++..+++.++
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888777766556799999999999975211 11246788999999999876
Q ss_pred ---------CeEEEEcCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy8073 535 ---------AIFMETSSKSGDNILDALIALSRHVYVFIPCVYL 568 (593)
Q Consensus 535 ---------~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~~ 568 (593)
++|++|||++|.||+++|..|++.+.........
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~ 198 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA 198 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 6799999999999999999999988765444433
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=8.3e-28 Score=223.43 Aligned_cols=161 Identities=38% Similarity=0.736 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+++.+.....++.|.++....+.+++..+.+.||||||++.|...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888899999998888889988899999999999999989999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.+|..+..|+..+......++|+++|+||+|+... +.+.......++...++.++++||++|.|+.++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ------REVTFLEASRFAQENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh------ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999988777777999999999999653 4467778888888899999999999999999999
Q ss_pred HHHHHHH
Q psy8073 553 IALSRHV 559 (593)
Q Consensus 553 ~~L~~~l 559 (593)
.++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 53
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=7.2e-28 Score=224.33 Aligned_cols=160 Identities=33% Similarity=0.608 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++++.+.+...+.+|.+ ++....+.+++..+.++||||||+++|..++..++++||++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999988887777765 566678888988889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
|++++.+|..+..|+..+.... ..++|+++|+||+|+... +.+.......++..+++++++|||++|.|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE------REVSSAEGRALAEEWGCPFMETSAKSKTMVNEL 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc------CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence 9999999999999998887764 356999999999998643 335556677888888889999999999999999
Q ss_pred HHHHHHHH
Q psy8073 552 LIALSRHV 559 (593)
Q Consensus 552 ~~~L~~~l 559 (593)
|.+|++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd04176 155 FAEIVRQM 162 (163)
T ss_pred HHHHHHhc
Confidence 99998754
No 54
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=8.2e-28 Score=226.70 Aligned_cols=164 Identities=28% Similarity=0.494 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+.+++.+.|...+.+|.+ +.....+.+++..+.+.||||||++.|..++..++++||++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999998888888876 444556778888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhCC-eEEEEcCCC
Q psy8073 473 DVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGA-IFMETSSKS 544 (593)
Q Consensus 473 D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~ 544 (593)
|++++.||..+. .|+..+....+ ++|+||||||+|+..... ....+.+...++..+++.+++ .|++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 59888876543 699999999999964311 011245788999999999985 899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy8073 545 GDNILDALIALSRH 558 (593)
Q Consensus 545 g~gi~~l~~~L~~~ 558 (593)
|.||+++|..|++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998864
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=9.6e-28 Score=224.49 Aligned_cols=160 Identities=29% Similarity=0.562 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++++.+.+...+.+|.|.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888999999988888888888899999999999999888889999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.++..+..|+..+..... ++|+++|+||+|+... .+.. ....++...++.+++|||++|.||+++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-------~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-------KVKA-KQITFHRKKNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-------cCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHH
Confidence 99999999999999999988765 6999999999999632 1222 2345666777899999999999999999
Q ss_pred HHHHHHHHh
Q psy8073 553 IALSRHVYV 561 (593)
Q Consensus 553 ~~L~~~l~~ 561 (593)
.+|++.+.+
T Consensus 152 ~~l~~~~~~ 160 (166)
T cd00877 152 LWLARKLLG 160 (166)
T ss_pred HHHHHHHHh
Confidence 999998875
No 56
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=1.2e-27 Score=232.84 Aligned_cols=170 Identities=25% Similarity=0.464 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+.+.|...+.+|++.++. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999899999987765 57788999999999999999999999999999999999999
Q ss_pred eCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEcCCC
Q psy8073 473 DVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETSSKS 544 (593)
Q Consensus 473 D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~ 544 (593)
|++++.+|+.+. .|...+.... .++|+||||||+||...... .....+..+.+..+++.+++ .|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999985 5887776554 45999999999999653110 11234788999999999996 899999999
Q ss_pred CCC-HHHHHHHHHHHHHhhcc
Q psy8073 545 GDN-ILDALIALSRHVYVFIP 564 (593)
Q Consensus 545 g~g-i~~l~~~L~~~l~~~~~ 564 (593)
+.| |.++|...++....+.+
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 985 99999998886655433
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=1.2e-27 Score=222.44 Aligned_cols=159 Identities=36% Similarity=0.628 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC--CeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD--ERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~--~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
+||+|+|++|||||||+++|+++.+...+.+|+|.++....+.+. +..+.++||||||+++|..++..+++.+|++|+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888888999999888888777 777899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
|||++++.+|..+..|+..+..... ++|+|+|+||+|+... ..+..+++..+++.++++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQ------AVITNEEAEALAKRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccc------cCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9999999999999999998876544 5999999999999653 34667788888999999999999999999999
Q ss_pred HHHHHHHH
Q psy8073 551 ALIALSRH 558 (593)
Q Consensus 551 l~~~L~~~ 558 (593)
++.+|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998753
No 58
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=2.7e-27 Score=230.09 Aligned_cols=168 Identities=38% Similarity=0.736 Sum_probs=152.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|++..|...+.+|+|.++....+.+++..+.+.||||+|++.|..++..+++.+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999999888888889999998888999998899999999999999989999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.+|..+..|+..+.......+|+|+|+||+|+... +.+..+.+..+++.++++++++||++|.||.
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR------RAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc------cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999887776667999999999999653 4477888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy8073 550 DALIALSRHVYVFI 563 (593)
Q Consensus 550 ~l~~~L~~~l~~~~ 563 (593)
++|.++++.+.+..
T Consensus 158 e~f~~l~~~~~~~~ 171 (210)
T PLN03108 158 EAFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 59
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=2.9e-27 Score=226.78 Aligned_cols=168 Identities=32% Similarity=0.566 Sum_probs=146.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccc-CCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLN-KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
+||+|+|++|||||||+++|+++.|.. .+.+|+|.++..+.+.+++..+.+.||||||++++..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998764 6788999888888899999889999999999999988889999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
||++++.+|..+..|+..+..... ++|+++|+||+|+..... ..+.+....+..++..+++.++++||++|.||+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDR--SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEccccccccc--ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999998877543 589999999999864311 22445666777888888899999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy8073 552 LIALSRHVYVFI 563 (593)
Q Consensus 552 ~~~L~~~l~~~~ 563 (593)
+.+|++.+.+..
T Consensus 158 ~~~i~~~~~~~~ 169 (193)
T cd04118 158 FQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHhc
Confidence 999999887643
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=1.6e-27 Score=222.68 Aligned_cols=158 Identities=27% Similarity=0.472 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++++++.|...+.+|.+.++ ...+..++..+.+.+|||||+++|..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777778876555 455667777889999999999999988899999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcC---CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTE---NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~---~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|++++.+|..+..|+..+..... .++|+|+|+||+|+... +.+....+..++..+++.|++|||++|.||+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~ 154 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK------REVSSNEGAACATEWNCAFMETSAKTNHNVQ 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc------CeecHHHHHHHHHHhCCcEEEeecCCCCCHH
Confidence 99999999999999888877542 46899999999999652 3466777788888889999999999999999
Q ss_pred HHHHHHHH
Q psy8073 550 DALIALSR 557 (593)
Q Consensus 550 ~l~~~L~~ 557 (593)
++|.+|+.
T Consensus 155 ~~f~~l~~ 162 (165)
T cd04140 155 ELFQELLN 162 (165)
T ss_pred HHHHHHHh
Confidence 99999874
No 61
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=1.6e-27 Score=227.92 Aligned_cols=167 Identities=28% Similarity=0.468 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
.||+|+|++|||||||+++|+.+.|...+.+|++..+. ..+.+++..+.+.||||+|++.|..++..+++.||++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999988888888876654 55677888899999999999999888999999999999999
Q ss_pred eCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccccc------cccccCHHHHHHHHHHhC-CeEEEEcCCC
Q psy8073 473 DVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQAK------GVKCIDREVGEKLAQQYG-AIFMETSSKS 544 (593)
Q Consensus 473 D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~------~~~~v~~~~~~~l~~~~~-~~~~e~Sa~~ 544 (593)
|++++.+|+.+. .|+..+..... ++|+|+|+||+|+....... ....+..+++..++...+ +.|++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 59988886554 69999999999997542111 112466777888888877 6899999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy8073 545 GDNILDALIALSRHVYV 561 (593)
Q Consensus 545 g~gi~~l~~~L~~~l~~ 561 (593)
|.||+++|.+|++.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998874
No 62
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=3.3e-27 Score=218.96 Aligned_cols=159 Identities=28% Similarity=0.613 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+|+|+++.|...+.+|.+..+ .+.+.+++..+.+.+|||||+++|..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6999999999999999999999988888888877554 566778888888999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
|++++.+|..+..|+..+.... ..++|+++|+||+|+.. +.+.......++...++++++|||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-------RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEA 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-------ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHH
Confidence 9999999999999988887764 35689999999999864 235566677788888899999999999999999
Q ss_pred HHHHHHHH
Q psy8073 552 LIALSRHV 559 (593)
Q Consensus 552 ~~~L~~~l 559 (593)
|.+|++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHh
Confidence 99998754
No 63
>KOG0097|consensus
Probab=99.95 E-value=1.4e-27 Score=203.70 Aligned_cols=170 Identities=34% Similarity=0.710 Sum_probs=159.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+|-+|+|+-|||||.|++.|....|....+.|+|+.|....+.+.|..+.++||||+|+++|+..+++||++|-+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
++|||++.+.++..+..|+.....+...+..|++++||.||... +.|+.++.+.++...|..|+++||++|.||
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q------rdv~yeeak~faeengl~fle~saktg~nv 161 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ------RDVTYEEAKEFAEENGLMFLEASAKTGQNV 161 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc------ccCcHHHHHHHHhhcCeEEEEecccccCcH
Confidence 99999999999999999999998888888889999999999764 779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy8073 549 LDALIALSRHVYVFIP 564 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~ 564 (593)
++.|..-++.++...+
T Consensus 162 edafle~akkiyqniq 177 (215)
T KOG0097|consen 162 EDAFLETAKKIYQNIQ 177 (215)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999988888876543
No 64
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=2.8e-27 Score=227.19 Aligned_cols=156 Identities=28% Similarity=0.537 Sum_probs=140.1
Q ss_pred EcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCCh
Q psy8073 398 AGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNE 477 (593)
Q Consensus 398 vG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~ 477 (593)
+|++|||||||+++|+.+.|...+.+|+|.++..+.+.+++..+.+.||||+|+++|..++..++++||++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988888899999999999999999899999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 478 RSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 478 ~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
.||..+..|+..+..... ++|+|+||||+|+... .+..+. ..++...++.|++|||++|.||.++|.+|++
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~~-------~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKDR-------KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccc-------cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999988754 6999999999998532 233333 3577788899999999999999999999999
Q ss_pred HHHhh
Q psy8073 558 HVYVF 562 (593)
Q Consensus 558 ~l~~~ 562 (593)
.+.+.
T Consensus 152 ~i~~~ 156 (200)
T smart00176 152 KLIGD 156 (200)
T ss_pred HHHhc
Confidence 88764
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=3.9e-27 Score=219.23 Aligned_cols=159 Identities=27% Similarity=0.521 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+.+.|.....++.+.++......+++..+.+.||||+|+++|..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988877888888888778888888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.++..+..|+..+..... ++|+++|+||+|+... + ......++...++++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~--------~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS--------V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh--------H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999976543 5899999999998432 1 233455667778899999999999999999
Q ss_pred HHHHHHHHh
Q psy8073 553 IALSRHVYV 561 (593)
Q Consensus 553 ~~L~~~l~~ 561 (593)
..+++.+..
T Consensus 151 ~~l~~~~~~ 159 (161)
T cd04124 151 QDAIKLAVS 159 (161)
T ss_pred HHHHHHHHh
Confidence 999988765
No 66
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=3.7e-27 Score=221.21 Aligned_cols=161 Identities=34% Similarity=0.597 Sum_probs=143.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+++|++|||||||+++|+++.|...+.+++|.++..+.+.+++..+.++||||||+++|..++..+++.||++|+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 45899999999999999999999998888888899998888888899999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHc----CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCCC
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVT----ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKSG 545 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g 545 (593)
|||++++.+|..+..|+..+.... ..++|+++|+||+|+.. +.+....+..++..+++ .+++|||++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 156 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-------RQVSTEEAQAWCRENGDYPYFETSAKDA 156 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-------cccCHHHHHHHHHHCCCCeEEEEECCCC
Confidence 999999999999999998876654 24689999999999852 34667788888888874 7999999999
Q ss_pred CCHHHHHHHHHHH
Q psy8073 546 DNILDALIALSRH 558 (593)
Q Consensus 546 ~gi~~l~~~L~~~ 558 (593)
.|+.++|..+++.
T Consensus 157 ~~v~~~~~~~~~~ 169 (170)
T cd04116 157 TNVAAAFEEAVRR 169 (170)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999865
No 67
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=2.5e-27 Score=226.95 Aligned_cols=164 Identities=27% Similarity=0.398 Sum_probs=133.2
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHhcC-----ccccCCCCccce-eeEEEE--------EEECCeeEEEEEEecCCchhhhh
Q psy8073 392 AFKIVFAGDAAVGKSCFIY-RFSKE-----VFLNKLGSTLGV-DFQMKT--------IRVDERNVALQLWDTAGQERFRS 456 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln-~l~~~-----~~~~~~~~t~g~-~~~~~~--------~~~~~~~~~~~l~DTaG~e~~~~ 456 (593)
.+||+++|++|||||||+. +++++ .|...+.||+|. +.+... ..+++..+.+.||||||++.+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 66554 345567788763 433322 257888999999999999753
Q ss_pred hhHhhccCCCEEEEEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccc-------------cccccccC
Q psy8073 457 MTKNYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQ-------------AKGVKCID 522 (593)
Q Consensus 457 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~-------------~~~~~~v~ 522 (593)
+...++++||++|+|||++++.||..+. .|+..+....+ ++|+|+||||+||..... ....+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4567899999999999999999999997 59998877654 689999999999964210 00136789
Q ss_pred HHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 523 REVGEKLAQQYGAIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 523 ~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
.++++.+++.+++.|++|||++|.||+++|..+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998763
No 68
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.95 E-value=4.1e-27 Score=221.09 Aligned_cols=163 Identities=38% Similarity=0.743 Sum_probs=146.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh-hhhHhhccCCCEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR-SMTKNYFRRADGVML 470 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~-~~~~~~~~~ad~vi~ 470 (593)
.+||+++|++|||||||+++|+.+.+...+.+|+|.++....+.+++..+.+.||||+|+++|. .++..+++.+|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999999888888999999998889999988999999999999986 578889999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCC---CC
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKS---GD 546 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~---g~ 546 (593)
|||++++.+|..+..|+..+.... ..++|+|+|+||+|+... +.+....+..++..++++|++|||++ +.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ------IQVPTDLAQRFADAHSMPLFETSAKDPSEND 155 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh------cCCCHHHHHHHHHHcCCcEEEEeccCCcCCC
Confidence 999999999999999999887764 356999999999998653 45777888889988899999999999 89
Q ss_pred CHHHHHHHHHHHHH
Q psy8073 547 NILDALIALSRHVY 560 (593)
Q Consensus 547 gi~~l~~~L~~~l~ 560 (593)
||.++|..|++.+.
T Consensus 156 ~i~~~f~~l~~~~~ 169 (170)
T cd04115 156 HVEAIFMTLAHKLK 169 (170)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988763
No 69
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=3e-27 Score=227.18 Aligned_cols=167 Identities=21% Similarity=0.271 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh--------hhhHhhccC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR--------SMTKNYFRR 464 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~--------~~~~~~~~~ 464 (593)
+||+|+|++|||||||+++|+++.|...+.+|.+.++....+.+++..+.+.||||||.+.|. .....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999888888888777777777888888999999999965442 123456789
Q ss_pred CCEEEEEEeCCChhcHHHHHHHHHHHHHHc---CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-HhCCeEEEE
Q psy8073 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVT---ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-QYGAIFMET 540 (593)
Q Consensus 465 ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~---~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-~~~~~~~e~ 540 (593)
||++|+|||++++.||+.+..|+..+.... ..++|+|+|+||+|+... +.+....+..++. .++++|++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH------RFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc------ccccHHHHHHHHHHhcCCcEEEe
Confidence 999999999999999999999998887764 456999999999999643 3355666666654 568899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhccc
Q psy8073 541 SSKSGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
||++|.||+++|..+++.+..+.+.
T Consensus 155 Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 155 SAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhccCCC
Confidence 9999999999999999988875554
No 70
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.95 E-value=4.2e-27 Score=219.28 Aligned_cols=161 Identities=35% Similarity=0.639 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|++..+...+.+|.+ +...+.+.+++..+.+.+|||||+++|..++..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999988777777765 444567778888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
|++++.+|..+..|...+.... ..++|+|+|+||+|+... +.+....+..++..+++++++|||++|.|+.++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE------RVVSTEEGKELARQWGCPFLETSAKERVNVDEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHH
Confidence 9999999999999988876653 346899999999999653 335666777888888899999999999999999
Q ss_pred HHHHHHHHH
Q psy8073 552 LIALSRHVY 560 (593)
Q Consensus 552 ~~~L~~~l~ 560 (593)
|.+|++.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T smart00173 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998765
No 71
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=7.1e-27 Score=217.46 Aligned_cols=163 Identities=44% Similarity=0.781 Sum_probs=147.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||+++|...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888888889888888888889888889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.+++.+..|+..+......++|+++|+||+|+... ..+..+.+..++..+++.++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQ------RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccc------cCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999988877667999999999998642 3456677778888889999999999999999999
Q ss_pred HHHHHHHHh
Q psy8073 553 IALSRHVYV 561 (593)
Q Consensus 553 ~~L~~~l~~ 561 (593)
.+|.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999988764
No 72
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=8.1e-27 Score=216.60 Aligned_cols=160 Identities=40% Similarity=0.732 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|++..+...+.++.|.++....+.+++..+.+++|||||++++..++..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999887778889889999999999888889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.+|..+..|+..+......++|+++|+||+|+... ..+..+....+++..++.++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK------RQVSTEEGEKKAKELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc------CccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999887766557999999999999532 3456677777888888999999999999999999
Q ss_pred HHHHHH
Q psy8073 553 IALSRH 558 (593)
Q Consensus 553 ~~L~~~ 558 (593)
.+|.+.
T Consensus 155 ~~i~~~ 160 (161)
T cd01861 155 RKIASA 160 (161)
T ss_pred HHHHHh
Confidence 999864
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=8.6e-27 Score=217.01 Aligned_cols=161 Identities=30% Similarity=0.562 Sum_probs=139.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.+||+++|++|||||||++++++..+...+.+|.+..+ .....+++..+.+.+|||||+++|..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999999887777777776444 55677888888999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
||++++.+|..+..|+..+.... ..++|+++|+||+|+... ..+....+..+++..++++++|||++|.||.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ------RKVSREEGQELARKLKIPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc------ceecHHHHHHHHHHcCCcEEEeeCCCCCCHHH
Confidence 99999999999999998887653 356899999999999653 33566677888888888999999999999999
Q ss_pred HHHHHHHHH
Q psy8073 551 ALIALSRHV 559 (593)
Q Consensus 551 l~~~L~~~l 559 (593)
+|.+|++.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998765
No 74
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=1.1e-26 Score=216.07 Aligned_cols=161 Identities=36% Similarity=0.718 Sum_probs=146.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+|+|+++.+.....+|.|.++....+.+++..+.+.||||||++++...+..+++.+|++|+||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999987778889898898899999999999999999999999888899999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.++..+..|+..+.......+|+++|+||+|+... +.+.......++...++.++++||++|.|+.+++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK------RQVSTEEAQEYADENGLLFFETSAKTGENVNELF 155 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------CcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999998877667999999999998743 3356667778888888999999999999999999
Q ss_pred HHHHHHH
Q psy8073 553 IALSRHV 559 (593)
Q Consensus 553 ~~L~~~l 559 (593)
.+|++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998875
No 75
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=6.1e-27 Score=217.05 Aligned_cols=155 Identities=20% Similarity=0.374 Sum_probs=131.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++++.+.|...+.++ +..+ ...+.+++..+.+.||||+|++. ..+++.+|++|+||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999999887766555 3344 47788899888999999999975 34678899999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh-CCeEEEEcCCCCCCHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDNILD 550 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~e~Sa~~g~gi~~ 550 (593)
|++++.||+.+..|+..+..... .++|+++||||+|+... ..+.+...++..+++.. ++.|++|||++|.||++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES----NPRVIDDARARQLCADMKRCSYYETCATYGLNVER 149 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc----CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHH
Confidence 99999999999999999987753 56899999999998532 13568888888999876 48999999999999999
Q ss_pred HHHHHHHH
Q psy8073 551 ALIALSRH 558 (593)
Q Consensus 551 l~~~L~~~ 558 (593)
+|..+++.
T Consensus 150 ~f~~~~~~ 157 (158)
T cd04103 150 VFQEAAQK 157 (158)
T ss_pred HHHHHHhh
Confidence 99999864
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=1.6e-26 Score=215.46 Aligned_cols=160 Identities=32% Similarity=0.549 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--ccccCCCCccceeeEEEEEEEC-CeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKE--VFLNKLGSTLGVDFQMKTIRVD-ERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~g~~~~~~~~~~~-~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
+||+|+|++|||||||+++|..+ .|...+.+|.|.++....+.++ +..+.+.+|||||++.+..++..+++.+|++|
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6778889999999888888775 56789999999999999888999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.++..+..|+..+.... .++|+++|+||+|+... ..+.......++..+++++++|||++|.|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 153 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADK------AEVTDAQAQAFAQANQLKFFKTSALRGVGYE 153 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc------cCCCHHHHHHHHHHcCCeEEEEeCCCCCChH
Confidence 9999999999999999999888765 45899999999999653 3355556667777788899999999999999
Q ss_pred HHHHHHHHHH
Q psy8073 550 DALIALSRHV 559 (593)
Q Consensus 550 ~l~~~L~~~l 559 (593)
+++..|++.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04101 154 EPFESLARAF 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 77
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=1.9e-26 Score=219.89 Aligned_cols=170 Identities=26% Similarity=0.433 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC-CeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD-ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~-~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
+||+|+|++|||||||+++|+++.|...+.+|++.++.. .+... +..+.+.||||||+++|..++..+++.||++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999888888888777654 35554 6678999999999999998999999999999999
Q ss_pred EeCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCCCCCHH
Q psy8073 472 YDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKSGDNIL 549 (593)
Q Consensus 472 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~gi~ 549 (593)
||++++.||+.+.. |+..+.... .++|+|+|+||+|+..... ..+.+....+..++..+++ .+++|||++|.||.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~--~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 156 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKN--LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVE 156 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCcc--ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHH
Confidence 99999999999864 988876554 3689999999999965321 1245677888889999988 89999999999999
Q ss_pred HHHHHHHHHHHhhcccc
Q psy8073 550 DALIALSRHVYVFIPCV 566 (593)
Q Consensus 550 ~l~~~L~~~l~~~~~~~ 566 (593)
++|..|++.+.......
T Consensus 157 ~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 157 EVFDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 99999999888755443
No 78
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=4.4e-26 Score=221.89 Aligned_cols=166 Identities=36% Similarity=0.696 Sum_probs=145.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|+++.+ ..+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4568999999999999999999999876 467889899998888889888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHH-HHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 470 LLYDVTNERSFNSVKN-WVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
+|||++++.+|..+.. |...+.... ..+.|+|+|+||+|+... +.+.......++...++.|++|||++|.|
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~i~~~~~~~~~~~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------RDVSREEGMALAKEHGCLFLECSAKTREN 164 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------CccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999976 766666543 345899999999999653 34667777788888899999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy8073 548 ILDALIALSRHVYVF 562 (593)
Q Consensus 548 i~~l~~~L~~~l~~~ 562 (593)
++++|.+|...+.+.
T Consensus 165 v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 165 VEQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998774
No 79
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=1.7e-26 Score=217.53 Aligned_cols=164 Identities=29% Similarity=0.542 Sum_probs=140.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeC
Q psy8073 395 IVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDV 474 (593)
Q Consensus 395 I~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~ 474 (593)
|+|+|++|||||||+++|+++.|...+.++.+..+ ...+.+++..+.+.||||||++.|..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999998887778876554 35667888888999999999999988999999999999999999
Q ss_pred CChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhCC-eEEEEcCCCCC
Q psy8073 475 TNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGA-IFMETSSKSGD 546 (593)
Q Consensus 475 ~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~ 546 (593)
+++.||+.+. .|+..+....+ ++|+|+|+||+|+..... ......+...++..+++..++ .+++|||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 49998877654 699999999999965311 011234778888999999986 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8073 547 NILDALIALSRHVY 560 (593)
Q Consensus 547 gi~~l~~~L~~~l~ 560 (593)
||+++|..|++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.95 E-value=3e-26 Score=227.26 Aligned_cols=161 Identities=27% Similarity=0.421 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+++.|...+.+|++ ++..+.+.+++..+.+.||||+|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998888888876 677788889998899999999999999888888899999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHH---------cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH-hCCeEEEEcC
Q psy8073 473 DVTNERSFNSVKNWVEAVEEV---------TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ-YGAIFMETSS 542 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~---------~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~-~~~~~~e~Sa 542 (593)
|++++.||+.+..|+..+... ...++|+|||+||+|+... +.+...++..+... .++.+++|||
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~------~~v~~~ei~~~~~~~~~~~~~evSA 153 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP------REVQRDEVEQLVGGDENCAYFEVSA 153 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc------cccCHHHHHHHHHhcCCCEEEEEeC
Confidence 999999999999999888764 2246899999999999642 33566666666543 4678999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy8073 543 KSGDNILDALIALSRHVY 560 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l~ 560 (593)
++|.||+++|.+|+....
T Consensus 154 ktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 154 KKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999998653
No 81
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=6.1e-26 Score=210.44 Aligned_cols=161 Identities=35% Similarity=0.708 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+++.+.....++.+.++....+.+.+..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887767777777777777888887889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.++..+..|+..+......++|+++|+||+|+... +.+.......++..+++.+++|||++|.|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ------RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999998877667999999999998743 3456677777888889999999999999999999
Q ss_pred HHHHHHH
Q psy8073 553 IALSRHV 559 (593)
Q Consensus 553 ~~L~~~l 559 (593)
.+|.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998765
No 82
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.4e-26 Score=217.36 Aligned_cols=163 Identities=20% Similarity=0.245 Sum_probs=139.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
++.+||+|+|++|||||||+++|+++.|. ..+.+|.|.++....+.+++..+.+.+|||+|++.+..++..++++||++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999999988 78889999888888888888888999999999999988899999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~g 547 (593)
|+|||++++.+|..+..|+..+.. ..++|+++|+||+|+... ..+.......+++.+++ .++++||++|.|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQ------QQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEccccccc------ccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 999999999999999888876532 235899999999999643 11222344567777776 368999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8073 548 ILDALIALSRHVY 560 (593)
Q Consensus 548 i~~l~~~L~~~l~ 560 (593)
++++|..|++.+.
T Consensus 154 v~~lf~~l~~~~~ 166 (169)
T cd01892 154 SNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
No 83
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=7.9e-26 Score=211.77 Aligned_cols=164 Identities=37% Similarity=0.743 Sum_probs=146.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...++|+++|++|||||||+++|+.+.+...+.+|+|.++....+.+++..+.+.+|||||++.|...+..++..+|++|
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34589999999999999999999988887788899988998888999998889999999999999888889999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.++..+..|+..+......++|+++|+||+|+... +.+.......+.....+.+++|||++|.|+.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~------~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 158 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER------REVSQQRAEEFSDAQDMYYLETSAKESDNVE 158 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence 9999999999999999999998877767999999999998653 3456666777777777889999999999999
Q ss_pred HHHHHHHHHH
Q psy8073 550 DALIALSRHV 559 (593)
Q Consensus 550 ~l~~~L~~~l 559 (593)
++|.+|++.+
T Consensus 159 ~l~~~i~~~~ 168 (169)
T cd04114 159 KLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=6.8e-26 Score=210.48 Aligned_cols=159 Identities=41% Similarity=0.766 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|++..+.....++.|.++....+.+++..+.+.||||||++.+......+++.+|++|+||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999999887778899999998888888888899999999999999888899999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
|++++.+|..+..|+..+.... ..++|+++|+||+|+.. ..+.......++...+++++++||++|.|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-------REVTREEGLKFARKHNMLFIETSAKTRDGVQQA 153 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-------cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHH
Confidence 9999999999999999888765 45799999999999963 235566777888888999999999999999999
Q ss_pred HHHHHHH
Q psy8073 552 LIALSRH 558 (593)
Q Consensus 552 ~~~L~~~ 558 (593)
+..+.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9998764
No 85
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.94 E-value=5.7e-26 Score=222.31 Aligned_cols=163 Identities=22% Similarity=0.349 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhcc-CCCEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFR-RADGVML 470 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~-~ad~vi~ 470 (593)
+||+|+|++|||||||+++|+.+.+. ..+.++.+.++..+.+.+++..+.+.||||||++.+ ....++. .+|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 667777776888888999998899999999999833 3345566 9999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|||++++.+|..+..|+..+.... ..++|+|+|+||+|+... +.+...++..++..+++.|++|||++|.||+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~------~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~ 152 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS------REVSVQEGRACAVVFDCKFIETSAGLQHNVD 152 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc------ceecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 999999999999999999887764 256999999999999653 4467777888888889999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy8073 550 DALIALSRHVYVFI 563 (593)
Q Consensus 550 ~l~~~L~~~l~~~~ 563 (593)
++|.+|++.+....
T Consensus 153 ~l~~~l~~~~~~~~ 166 (221)
T cd04148 153 ELLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887543
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.94 E-value=3.3e-26 Score=213.70 Aligned_cols=160 Identities=31% Similarity=0.563 Sum_probs=137.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh-hhhhHhhccCCCEEEEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF-RSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~-~~~~~~~~~~ad~vi~v~ 472 (593)
||+|+|++|||||||+++++.+.|.+.+.+|.+..+ ...+.+++..+.+.||||||++++ ......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 699999999999999999999888777777765444 466778888889999999999853 455778899999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHc--CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCC-CCHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVT--ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSG-DNIL 549 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~--~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g-~gi~ 549 (593)
|++++.+|..+..|+..+.... ..++|+|+|+||+|+... +.+....+..++..++++|++|||++| .||+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~ 153 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY------RQVSTEEGEKLASELGCLFFEVSAAEDYDGVH 153 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh------CccCHHHHHHHHHHcCCEEEEeCCCCCchhHH
Confidence 9999999999999998888765 346999999999998543 446778888899889999999999999 5999
Q ss_pred HHHHHHHHHHH
Q psy8073 550 DALIALSRHVY 560 (593)
Q Consensus 550 ~l~~~L~~~l~ 560 (593)
++|..|++.+.
T Consensus 154 ~~f~~l~~~~~ 164 (165)
T cd04146 154 SVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=6.9e-26 Score=212.28 Aligned_cols=161 Identities=35% Similarity=0.631 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+++|++|||||||+++|+++.+...+.+|.+..+ .+.+.+++..+.+.+|||||+++|..++..+++.+|++|+||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 7999999999999999999999988887888877544 577788888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-CeEEEEcCCCCCCHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG-AIFMETSSKSGDNILD 550 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~-~~~~e~Sa~~g~gi~~ 550 (593)
|++++.++..+..|...+.... ..++|+++|+||+|+... +.+.......+++.++ +++++|||++|.||.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD------RQVSREDGVSLSQQWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc------CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence 9999999999999998887643 356999999999998653 3456667777888888 7899999999999999
Q ss_pred HHHHHHHHHH
Q psy8073 551 ALIALSRHVY 560 (593)
Q Consensus 551 l~~~L~~~l~ 560 (593)
+|.+|+..+.
T Consensus 155 ~f~~i~~~~~ 164 (168)
T cd04177 155 VFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=1.1e-25 Score=211.32 Aligned_cols=164 Identities=34% Similarity=0.636 Sum_probs=143.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+|+|.+..+.....+|+|.++..+.+.+++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888889899998888889998899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcC----CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-CeEEEEcCCCCCC
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTE----NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG-AIFMETSSKSGDN 547 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~----~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~-~~~~e~Sa~~g~g 547 (593)
|++++.++..+..|...+..... .++|+++|+||+|+... ..+..+....+....+ +.++++||++|.|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 154 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK------RQVSTKKAQQWCQSNGNIPYFETSAKEAIN 154 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc------cccCHHHHHHHHHHcCCceEEEEECCCCCC
Confidence 99999999998889887655442 36899999999999742 2345666777777776 7899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy8073 548 ILDALIALSRHVYVF 562 (593)
Q Consensus 548 i~~l~~~L~~~l~~~ 562 (593)
+.+++.+|.+.+.+.
T Consensus 155 v~~l~~~i~~~~~~~ 169 (172)
T cd01862 155 VEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987764
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.94 E-value=6.6e-26 Score=213.44 Aligned_cols=165 Identities=28% Similarity=0.499 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|+.+.|...+.+|.+ +.....+.+++..+.+.||||||++.|..++..++..+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777777765 344456778888888999999999999888899999999999999
Q ss_pred eCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEcCCC
Q psy8073 473 DVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETSSKS 544 (593)
Q Consensus 473 D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~ 544 (593)
|++++.+|..+. .|+..+... ..++|+++|+||+|+.+.... ...+.+...++..+++.+++ .|++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999886 588888765 456999999999998654211 11245778888999998986 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8073 545 GDNILDALIALSRHV 559 (593)
Q Consensus 545 g~gi~~l~~~L~~~l 559 (593)
|.||+++|..++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=8.7e-26 Score=212.68 Aligned_cols=163 Identities=28% Similarity=0.468 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++++++.|...+.+|. .++....+.+++..+.+.||||||+++|..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999998888888875 4566667888888899999999999999888999999999999999
Q ss_pred eCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhCC-eEEEEcCCC
Q psy8073 473 DVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGA-IFMETSSKS 544 (593)
Q Consensus 473 D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~ 544 (593)
|++++.+|+.+. .|+..+.... .++|+++|+||+|+..... ....+.+..+.+..+++..++ .|++|||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 5988887543 3589999999999964311 012355778888899998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q psy8073 545 GDNILDALIALSR 557 (593)
Q Consensus 545 g~gi~~l~~~L~~ 557 (593)
|.||+++|.++..
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998753
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=3.5e-25 Score=203.89 Aligned_cols=158 Identities=43% Similarity=0.825 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+++|++|||||||+++|++..+...+.+|.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|+||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888878889999999999999888899999999999999889999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|++++.++..+..|+..+......++|+++|+||+|+... ..+..+....++...++.++++||++|.|+.+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ------RQVSTEEAQQFAKENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc------ccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 9999999999999999998887667999999999999622 3356677888888888999999999999999999
Q ss_pred HHHH
Q psy8073 553 IALS 556 (593)
Q Consensus 553 ~~L~ 556 (593)
.+|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9986
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=6.4e-25 Score=204.12 Aligned_cols=161 Identities=29% Similarity=0.569 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+++|++|||||||+++++...+...+.++.+.. ..+...+++..+.+.||||||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999998877777776544 4466778888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
|++++.+|..+..|+..+.... ..++|+++|+||+|+... ..........++..++++++++||++|.|+.++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK------RQVSSEEAANLARQWGVPYVETSAKTRQNVEKA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc------cccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHH
Confidence 9999999999999888887764 356999999999999652 224556667778888899999999999999999
Q ss_pred HHHHHHHHH
Q psy8073 552 LIALSRHVY 560 (593)
Q Consensus 552 ~~~L~~~l~ 560 (593)
|.+|...+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T cd04139 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHH
Confidence 999988775
No 93
>KOG0395|consensus
Probab=99.94 E-value=2.4e-25 Score=212.17 Aligned_cols=164 Identities=34% Similarity=0.588 Sum_probs=152.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+++|.+|||||+|..+|+.+.|...+.+|+. +.+.+.+.+++..+.+.|+||+|++.|..+...+++.+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 458999999999999999999999999999999987 7788999999999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
||+++++.||+.+..++..|..... ..+|+|+||||+|+... +.|+.+++..++..++|.|+|+||+.+.+|+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~------R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE------RQVSEEEGKALARSWGCAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc------cccCHHHHHHHHHhcCCcEEEeeccCCcCHH
Confidence 9999999999999998888855443 55899999999999753 7799999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy8073 550 DALIALSRHVYV 561 (593)
Q Consensus 550 ~l~~~L~~~l~~ 561 (593)
++|..|++.+..
T Consensus 155 ~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 155 EVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHh
Confidence 999999998886
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=2e-25 Score=209.21 Aligned_cols=155 Identities=19% Similarity=0.398 Sum_probs=122.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+++|..+.+. .+.+|.|.++. .+.. ..+.++||||||++++..++..++++||++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999988764 45678777664 3333 3488999999999999889999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHH-HcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-----HhCCeEEEEcCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEE-VTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-----QYGAIFMETSSK 543 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~-~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-----~~~~~~~e~Sa~ 543 (593)
+|||++++.++..+..|+..+.. ....++|++||+||+|+... +..+++..... ..++.+++|||+
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~SAk 153 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--------MKPHEIQEKLGLTRIRDRNWYVQPSCAT 153 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--------CCHHHHHHHcCCCccCCCcEEEEEeeCC
Confidence 99999999999888876655543 22345899999999998642 33444444331 123468999999
Q ss_pred CCCCHHHHHHHHHH
Q psy8073 544 SGDNILDALIALSR 557 (593)
Q Consensus 544 ~g~gi~~l~~~L~~ 557 (593)
+|.||.++|.+|++
T Consensus 154 ~g~gv~~~~~~l~~ 167 (168)
T cd04149 154 SGDGLYEGLTWLSS 167 (168)
T ss_pred CCCChHHHHHHHhc
Confidence 99999999999864
No 95
>KOG0393|consensus
Probab=99.93 E-value=4.4e-26 Score=212.02 Aligned_cols=169 Identities=30% Similarity=0.543 Sum_probs=150.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC-CeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD-ERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~-~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
..+|++|||+.++|||+|+..+..+.|+..+.||+. |-+...+.++ |..+.+.||||||++.|..++...|..+|++|
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 458999999999999999999999999999999986 6666778885 99999999999999999888888999999999
Q ss_pred EEEeCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhCC-eEEEEc
Q psy8073 470 LLYDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGA-IFMETS 541 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~~-~~~e~S 541 (593)
+||++.++.||.++.. |++++..+++ ++|+|+||+|.||+.... ......|+.+.+..+++..|+ .|++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999876 9999999986 599999999999985431 123467899999999999995 699999
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy8073 542 SKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~ 561 (593)
|++..|+.++|+..++....
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999988877764
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=8.8e-25 Score=205.98 Aligned_cols=165 Identities=29% Similarity=0.546 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
.||+|+|++|||||||+++|+++.|...+.+|.+..+. ..+.+++..+.+.||||+|++.|..++..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999988888888876554 46678888889999999999999888888899999999999
Q ss_pred eCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEcCCC
Q psy8073 473 DVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETSSKS 544 (593)
Q Consensus 473 D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~ 544 (593)
|++++.+|..+.. |+..+.... .++|+++|+||+|+...... .....+....++.++...+. .+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999998864 888887654 35899999999998643211 01234566788888888775 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8073 545 GDNILDALIALSRHV 559 (593)
Q Consensus 545 g~gi~~l~~~L~~~l 559 (593)
|.||+++|.+|++..
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998653
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=6.4e-25 Score=208.78 Aligned_cols=165 Identities=22% Similarity=0.400 Sum_probs=132.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEE-CCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV-DERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~-~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
.+||+++|++|||||||+++++.+.+... .+|.|.++....+.+ ++.++.+.+|||||+++|..++..+++.||++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998886644 577777776666655 4456899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH------HhCCeEEEEcCC
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ------QYGAIFMETSSK 543 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~------~~~~~~~e~Sa~ 543 (593)
|||++++.++..+..|+..+.... ..++|++||+||+|+... +..+....+.. ..++.+++|||+
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 153 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--------LSVSEVEKLLALHELSASTPWHVQPACAI 153 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--------CCHHHHHHHhCccccCCCCceEEEEeecc
Confidence 999999999988888887776543 346899999999998642 23333333321 112468899999
Q ss_pred CCCCHHHHHHHHHHHHHhhccc
Q psy8073 544 SGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
+|.||++++.+|.+.+.+..+.
T Consensus 154 ~~~gi~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 154 IGEGLQEGLEKLYEMILKRRKM 175 (183)
T ss_pred cCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988765443
No 98
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=5.4e-25 Score=206.53 Aligned_cols=156 Identities=19% Similarity=0.364 Sum_probs=126.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
||+|+|++|||||||+++|++..+.. +.+|.|.++. .+..+ .+.+.+|||||++++...+..+++.+|++|+|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987654 6778776664 33344 4889999999999998889999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC------CeEEEEcCCCCC
Q psy8073 474 VTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG------AIFMETSSKSGD 546 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~------~~~~e~Sa~~g~ 546 (593)
++++.++..+..|+..+.... ..++|++||+||+|+... +..+++..+....+ ..+++|||++|.
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--------LSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--------CCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 999999999988887775432 345899999999999542 45555555543221 258899999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy8073 547 NILDALIALSRHVYVF 562 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~ 562 (593)
||.++|.+|++.+...
T Consensus 148 gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 148 GLYEGLDWLSRQLVAA 163 (169)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999887763
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=1.3e-24 Score=206.03 Aligned_cols=156 Identities=20% Similarity=0.442 Sum_probs=123.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+++|++|||||||+++|+.+.+. .+.+|+|.++. .+... .+.+.||||||++++..++..++++||++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999988765 46788776653 34443 488999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHH-HcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC--------eEEEE
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEE-VTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA--------IFMET 540 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~-~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~--------~~~e~ 540 (593)
+|||++++.++..+..|+..+.. ....++|++||+||+|+... +..+. +....++ .+++|
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--------~~~~~---~~~~l~l~~~~~~~~~~~~~ 158 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--------MNAAE---ITDKLGLHSLRQRHWYIQST 158 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--------CCHHH---HHHHhCccccCCCceEEEec
Confidence 99999999999888776665532 22246899999999999653 22222 2222222 35689
Q ss_pred cCCCCCCHHHHHHHHHHHHHh
Q psy8073 541 SSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
||++|.||.++|.+|+..+..
T Consensus 159 Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 159 CATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988765
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.93 E-value=1.4e-24 Score=201.51 Aligned_cols=152 Identities=23% Similarity=0.460 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+++|.+|||||||++++..+.|.. +.+|.|.++. .+... .+.+.||||||++++..++..++++||++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999998887764 6778776653 33333 488999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHH-HcCCCCcEEEEEeCCCCCCccccccccccCH-HHHHHHHH----HhCCeEEEEcCCCCC
Q psy8073 473 DVTNERSFNSVKNWVEAVEE-VTENSIPIVICANKVDLRADAQAKGVKCIDR-EVGEKLAQ----QYGAIFMETSSKSGD 546 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~-~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~-~~~~~l~~----~~~~~~~e~Sa~~g~ 546 (593)
|++++.++..+..|+..+.. .....+|++||+||+|+... +.. +....+.. ..++.+++|||++|.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~ 147 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--------MSAAEVTDKLGLHSLRNRNWYIQATCATSGD 147 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--------CCHHHHHHHhCccccCCCCEEEEEeeCCCCC
Confidence 99999999988886665533 22245899999999999643 122 22222211 123357899999999
Q ss_pred CHHHHHHHHHH
Q psy8073 547 NILDALIALSR 557 (593)
Q Consensus 547 gi~~l~~~L~~ 557 (593)
||+++|.+|.+
T Consensus 148 gv~~~~~~l~~ 158 (159)
T cd04150 148 GLYEGLDWLSN 158 (159)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 101
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=2.1e-24 Score=204.89 Aligned_cols=161 Identities=19% Similarity=0.401 Sum_probs=123.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||++++..+.+.. +.+|.|.++. .+.. ..+.+.||||||++++..++..+++.||++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998887654 5678776654 3333 3488999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHH-HHHH----HHhCCeEEEEcCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVG-EKLA----QQYGAIFMETSSK 543 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~-~~l~----~~~~~~~~e~Sa~ 543 (593)
+|||++++.++..+..|+..+... ....+|+|||+||+|+... +..... ..+. ...++.+++|||+
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~~~i~~~l~~~~~~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--------MSTTEVTEKLGLHSVRQRNWYIQGCCAT 161 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--------CCHHHHHHHhCCCcccCCcEEEEeeeCC
Confidence 999999999998887766555322 2245899999999998643 122221 1111 1112346789999
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q psy8073 544 SGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~~ 563 (593)
+|.|+.++|++|.+.+.+.+
T Consensus 162 tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 162 TAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999887643
No 102
>KOG4252|consensus
Probab=99.93 E-value=2.2e-26 Score=204.20 Aligned_cols=170 Identities=35% Similarity=0.556 Sum_probs=158.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+|++|+|..+|||||+|.++|.+.|...+..|+|++|....+.+++..+.+.+|||||++.|..+++.||++|.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
++||+-+|..||+.+..|+..+...... +|.++|-||+||.+. .++...+.+.+++..++.++.+|++...||
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~~-IPtV~vqNKIDlved------s~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETER-IPTVFVQNKIDLVED------SQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhcc-CCeEEeeccchhhHh------hhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 9999999999999999999999887664 999999999999876 568888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q psy8073 549 LDALIALSRHVYVFIPC 565 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~~ 565 (593)
..+|..|+..+.....+
T Consensus 170 ~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999887766554
No 103
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.93 E-value=1.6e-24 Score=204.10 Aligned_cols=156 Identities=22% Similarity=0.382 Sum_probs=123.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....++|+|+|++|||||||+++|++..+ ..+.+|+|.. ...+.+++ +.+.+|||||++.+...+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 34568999999999999999999998854 4566777643 34455554 8899999999999988899999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-----HhCCeEEEEcC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-----QYGAIFMETSS 542 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-----~~~~~~~e~Sa 542 (593)
|+|||++++.+|..+..|+..+... ...++|++||+||+|+... ........+.. ..++++++|||
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--------LSEEEIREALELDKISSHHWRIQPCSA 157 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--------CCHHHHHHHhCccccCCCceEEEeccC
Confidence 9999999999998888887766432 2356999999999999653 12333333332 23567999999
Q ss_pred CCCCCHHHHHHHHHH
Q psy8073 543 KSGDNILDALIALSR 557 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~ 557 (593)
++|.|++++|.+|+.
T Consensus 158 ~~g~gi~~l~~~l~~ 172 (173)
T cd04154 158 VTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999863
No 104
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=3e-24 Score=198.59 Aligned_cols=158 Identities=38% Similarity=0.635 Sum_probs=138.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
||+|+|++|||||||+++|++..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..++..+|++|+|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 699999999999999999998887777777766 5666777788778899999999999998888999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 474 VTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
++++.++..+..|+..+..... .++|+++|+||+|+... ..+..+.+..++..++++++++||++|.|+.+++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE------RQVSKEEGKALAKEWGCPFIETSAKDNINIDEVF 153 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc------ceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Confidence 9999999999998888877655 57999999999998753 3356677888888888899999999999999999
Q ss_pred HHHHHH
Q psy8073 553 IALSRH 558 (593)
Q Consensus 553 ~~L~~~ 558 (593)
.+|.+.
T Consensus 154 ~~l~~~ 159 (160)
T cd00876 154 KLLVRE 159 (160)
T ss_pred HHHHhh
Confidence 999865
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=3.2e-24 Score=206.60 Aligned_cols=162 Identities=30% Similarity=0.477 Sum_probs=134.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
||+|+|++|||||||+++|+.+.+...+.+|.+ ++....+.+.+..+.+.||||||+..|..++..++..||++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 699999999999999999999988777777765 4566677788878899999999999998888899999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-HhCCeEEEEcCCCCCCHHHH
Q psy8073 474 VTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-QYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-~~~~~~~e~Sa~~g~gi~~l 551 (593)
++++.++..+..|+..+..... .++|+|+|+||+|+... .+.+.......... .+++.++++||++|.||.++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 154 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE-----ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEV 154 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc-----cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHH
Confidence 9999999999999888877654 56999999999998642 12243433333332 45678999999999999999
Q ss_pred HHHHHHHHHh
Q psy8073 552 LIALSRHVYV 561 (593)
Q Consensus 552 ~~~L~~~l~~ 561 (593)
|.+|++.+..
T Consensus 155 ~~~l~~~~~~ 164 (198)
T cd04147 155 FKELLRQANL 164 (198)
T ss_pred HHHHHHHhhc
Confidence 9999997763
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=2.7e-24 Score=201.14 Aligned_cols=161 Identities=22% Similarity=0.365 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|.++.|...+.++. .++ .....+++..+.+.||||||.+.+...+..++..+|++|+||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998866544432 222 344456677789999999999888777788889999999999
Q ss_pred eCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC--CeEEEEcCCCCCCHH
Q psy8073 473 DVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG--AIFMETSSKSGDNIL 549 (593)
Q Consensus 473 D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~--~~~~e~Sa~~g~gi~ 549 (593)
|++++.+|..+. .|+..+..... ++|+++|+||+|+.+.... ......+..++..++ ..+++|||++|.|++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQ----AGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccch----hHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 999999999985 58888877654 6999999999999754110 011233334444443 379999999999999
Q ss_pred HHHHHHHHHHH
Q psy8073 550 DALIALSRHVY 560 (593)
Q Consensus 550 ~l~~~L~~~l~ 560 (593)
++|..+...+.
T Consensus 154 ~lf~~~~~~~~ 164 (166)
T cd01893 154 EVFYYAQKAVL 164 (166)
T ss_pred HHHHHHHHHhc
Confidence 99999888765
No 107
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.92 E-value=4.3e-24 Score=203.83 Aligned_cols=170 Identities=29% Similarity=0.522 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
.||+|+|++|||||||+++|+.+.+...+.+|++..+. ..+.+++..+.+.+|||+|++.+......+++.+|++|+||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 58999999999999999999988877777777655543 46677887888999999999988777777889999999999
Q ss_pred eCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCcccc----ccccccCHHHHHHHHHHhCC-eEEEEcCCCCC
Q psy8073 473 DVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQA----KGVKCIDREVGEKLAQQYGA-IFMETSSKSGD 546 (593)
Q Consensus 473 D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~----~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~ 546 (593)
|++++.+|..+. .|+..+....+ ++|+|+|+||+|+...... ...+.+....+..+++.+++ .|++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999987 59998877655 4999999999998542111 11345667788889999985 79999999999
Q ss_pred CHHHHHHHHHHHHHhhcc
Q psy8073 547 NILDALIALSRHVYVFIP 564 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~~~ 564 (593)
||+++|.+|++.+....+
T Consensus 160 ~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 160 GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHHHhcccC
Confidence 999999999988875433
No 108
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.92 E-value=3.9e-25 Score=206.37 Aligned_cols=155 Identities=21% Similarity=0.317 Sum_probs=124.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeC
Q psy8073 395 IVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDV 474 (593)
Q Consensus 395 I~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~ 474 (593)
|+|+|++|||||||+++|++..+...+.+|.|.++ ..+++..+.+.||||||+++|..++..++++||++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 89999999999999999999888788888988653 23445568999999999999999999999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccC-HHHHHHHHHHhCCeEEEEcCCC------CCC
Q psy8073 475 TNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCID-REVGEKLAQQYGAIFMETSSKS------GDN 547 (593)
Q Consensus 475 ~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~-~~~~~~l~~~~~~~~~e~Sa~~------g~g 547 (593)
+++.++..++.|+..+.... .++|+++|+||+|+...... ..+. ...+..+++..++.+++|||++ +.|
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~ 153 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSV---QEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA 153 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCH---HHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence 99999999988887775433 46999999999999654110 0000 1123456666678889888888 999
Q ss_pred HHHHHHHHHH
Q psy8073 548 ILDALIALSR 557 (593)
Q Consensus 548 i~~l~~~L~~ 557 (593)
|.++|..|..
T Consensus 154 v~~~~~~~~~ 163 (164)
T cd04162 154 VKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHhc
Confidence 9999998763
No 109
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.92 E-value=7.1e-24 Score=200.86 Aligned_cols=167 Identities=30% Similarity=0.499 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
.||+|+|++|||||||+++|++..+...+.+|.+..+ ...+.+++..+.+.||||||+++|...+..++..+|++|+||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887776767765544 456677877888999999999999888889999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
|+++..+++.+..|+..+.... ..+.|+|+|+||+|+... +.+.......++..++++++++||++|.|+.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ------RQVSTEEGKELAESWGAAFLESSARENENVEEA 154 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc------CccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999999877766543 356899999999998642 335556667778888889999999999999999
Q ss_pred HHHHHHHHHhhcccc
Q psy8073 552 LIALSRHVYVFIPCV 566 (593)
Q Consensus 552 ~~~L~~~l~~~~~~~ 566 (593)
+.+|.+.+.......
T Consensus 155 ~~~l~~~~~~~~~~~ 169 (180)
T cd04137 155 FELLIEEIEKVENPL 169 (180)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999988755433
No 110
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.92 E-value=3.2e-24 Score=202.41 Aligned_cols=156 Identities=19% Similarity=0.400 Sum_probs=121.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
+.+||+++|++|||||||+++|..+.+. .+.+|+|.++.. +... .+.+.||||||++++..++..++++||++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4589999999999999999999877764 466787776643 3333 4889999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH-----HHhCCeEEEEcCCC
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA-----QQYGAIFMETSSKS 544 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~-----~~~~~~~~e~Sa~~ 544 (593)
|||++++.++..+..|+..+... ...++|++||+||+|+.+. .......... ....+.+++|||++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--------MKAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--------CCHHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 99999999999888877666432 2245899999999999643 1122211111 11223477899999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8073 545 GDNILDALIALSRHV 559 (593)
Q Consensus 545 g~gi~~l~~~L~~~l 559 (593)
|.||.++|.+|...+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 111
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1e-23 Score=205.83 Aligned_cols=174 Identities=27% Similarity=0.506 Sum_probs=147.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+++++.+.+...+.+|+|.++....+..+++.+.+.+|||+|+++|..++..++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 34568999999999999999999988888888999999999988888888899999999999999988889999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||+++..+|..+..|+..+.... .++|+++|+||+|+... .+.... ..++...++.++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-------~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-------QVKARQ-ITFHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-------cCCHHH-HHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999888665 45899999999998542 122222 3466677888999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCCCC
Q psy8073 549 LDALIALSRHVYVFIPCVYLKDLP 572 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~~~~~~~~~ 572 (593)
+++|.+|++.+.. .+.+..-+-|
T Consensus 157 ~~~f~~ia~~l~~-~p~~~~ldEp 179 (215)
T PTZ00132 157 EKPFLWLARRLTN-DPNLVFVGAP 179 (215)
T ss_pred HHHHHHHHHHHhh-cccceecCCc
Confidence 9999999998876 4444443333
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.92 E-value=2.8e-24 Score=206.31 Aligned_cols=148 Identities=24% Similarity=0.437 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC-----CeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD-----ERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~-----~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
+||+++|+++||||||+++|+++.|...+.+|+|.++..+.+.++ +..+.+.||||+|+++|..++..+|+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988899999998888877774 457899999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHc-------------------CCCCcEEEEEeCCCCCCccccccccccCHH----
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVT-------------------ENSIPIVICANKVDLRADAQAKGVKCIDRE---- 524 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~-------------------~~~~piivV~NK~Dl~~~~~~~~~~~v~~~---- 524 (593)
+|+|||++++.||+.+..|+..+.... ..++|+||||||+|+... +.+...
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~------r~~~~~~~~~ 154 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE------KESSGNLVLT 154 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh------cccchHHHhh
Confidence 999999999999999999999987642 246899999999999654 223322
Q ss_pred HHHHHHHHhCCeEEEEcCCCCC
Q psy8073 525 VGEKLAQQYGAIFMETSSKSGD 546 (593)
Q Consensus 525 ~~~~l~~~~~~~~~e~Sa~~g~ 546 (593)
....+++..+++.++.+|+++.
T Consensus 155 ~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 155 ARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred HhhhHHHhcCCceEEEecCCcc
Confidence 2445788899999999998763
No 113
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.92 E-value=5.3e-24 Score=199.58 Aligned_cols=163 Identities=33% Similarity=0.568 Sum_probs=134.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|++..+...+.++.. +.......+++..+.+++|||||++.+......+++.+|++|+||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999987666666653 445556677888899999999999988777888889999999999
Q ss_pred eCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCcccccc-----ccccCHHHHHHHHHHhCC-eEEEEcCCCC
Q psy8073 473 DVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQAKG-----VKCIDREVGEKLAQQYGA-IFMETSSKSG 545 (593)
Q Consensus 473 D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~-----~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g 545 (593)
|++++.+|..... |+..+..... ++|+++|+||+|+........ ...+....+..++..+++ .|+++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999877654 8887776554 699999999999875422110 124567778888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q psy8073 546 DNILDALIALSR 557 (593)
Q Consensus 546 ~gi~~l~~~L~~ 557 (593)
.|+.+++.+|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999865
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.92 E-value=4.1e-24 Score=198.48 Aligned_cols=152 Identities=19% Similarity=0.340 Sum_probs=118.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc-cccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEV-FLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~-~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+|+|+|++|||||||+++|++.. +...+.+|+|.++.. +.. ..+.+.+|||||+++|..++..+++.+|++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999875 356677888765432 333 3588999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHH---cCCCCcEEEEEeCCCCCCccccccccccCHHHHHH---HHH--HhCCeEEEEcCCC
Q psy8073 473 DVTNERSFNSVKNWVEAVEEV---TENSIPIVICANKVDLRADAQAKGVKCIDREVGEK---LAQ--QYGAIFMETSSKS 544 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~---~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~---l~~--~~~~~~~e~Sa~~ 544 (593)
|++++.++..+..|+..+... ...++|+++|+||+|+.... ....... +.. ...+.+++|||++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~Sa~~ 148 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--------TAVKITQLLGLENIKDKPWHIFASNALT 148 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--------CHHHHHHHhCCccccCceEEEEEeeCCC
Confidence 999999998888887776543 22469999999999996531 1111111 111 1233589999999
Q ss_pred CCCHHHHHHHHHH
Q psy8073 545 GDNILDALIALSR 557 (593)
Q Consensus 545 g~gi~~l~~~L~~ 557 (593)
|.|++++|.+|.+
T Consensus 149 g~gv~~~~~~l~~ 161 (162)
T cd04157 149 GEGLDEGVQWLQA 161 (162)
T ss_pred CCchHHHHHHHhc
Confidence 9999999999864
No 115
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.91 E-value=6.7e-25 Score=225.92 Aligned_cols=195 Identities=21% Similarity=0.246 Sum_probs=149.3
Q ss_pred CCCCCCCCchh-hhcCCCCCCCCCCcccccCCCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceee
Q psy8073 351 YDYNKRDYPEL-RRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDF 429 (593)
Q Consensus 351 ~d~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~ 429 (593)
|||+|+|+|.. ...+...+..+...+..++.....+...+.|+||||+|.||||||||+|+|++.. .++++..+|+|+
T Consensus 175 IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d-~AIVTdI~GTTR 253 (454)
T COG0486 175 IDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRD-RAIVTDIAGTTR 253 (454)
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCC-ceEecCCCCCcc
Confidence 89999977743 3334445555666777788888889999999999999999999999999999997 677777777777
Q ss_pred EEEEEEECCeeEEEEEEecCCc-------hhh-hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEE
Q psy8073 430 QMKTIRVDERNVALQLWDTAGQ-------ERF-RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV 501 (593)
Q Consensus 430 ~~~~~~~~~~~~~~~l~DTaG~-------e~~-~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii 501 (593)
+.....++-+++++.|+||||+ |+. ..+++..+..||+||+|+|++.+.+-.+.. .+. ....+.|++
T Consensus 254 Dviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~----~~~-~~~~~~~~i 328 (454)
T COG0486 254 DVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA----LIE-LLPKKKPII 328 (454)
T ss_pred ceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH----HHH-hcccCCCEE
Confidence 7777766666699999999994 333 456778899999999999999874444332 112 345568999
Q ss_pred EEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 502 vV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
+|.||+||...... ..+....+.+++.+||++|.|++.+..+|.+.+...
T Consensus 329 ~v~NK~DL~~~~~~-----------~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 329 VVLNKADLVSKIEL-----------ESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEEechhccccccc-----------chhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 99999999865221 111111233589999999999999999999988764
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.91 E-value=3.2e-23 Score=195.41 Aligned_cols=154 Identities=21% Similarity=0.386 Sum_probs=120.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+++|++|||||||+++|+.+.+.. +.+|+|.++. .+.++ .+.+.||||||+++|...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 45899999999999999999999887664 5778776653 34444 4889999999999998889999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHH-HHHHH----HHhCCeEEEEcCCC
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREV-GEKLA----QQYGAIFMETSSKS 544 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~-~~~l~----~~~~~~~~e~Sa~~ 544 (593)
|||++++.++..+..|+..+... ...++|+++|+||+|+... +..++ ...+. ...++.+++|||++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--------~~~~~i~~~l~~~~~~~~~~~~~~~SA~~ 160 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--------MTPAEISESLGLTSIRDHTWHIQGCCALT 160 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--------CCHHHHHHHhCcccccCCceEEEecccCC
Confidence 99999999888887766655432 2245899999999998642 22222 22222 22345789999999
Q ss_pred CCCHHHHHHHHHH
Q psy8073 545 GDNILDALIALSR 557 (593)
Q Consensus 545 g~gi~~l~~~L~~ 557 (593)
|.||++++.+|++
T Consensus 161 g~gi~e~~~~l~~ 173 (174)
T cd04153 161 GEGLPEGLDWIAS 173 (174)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999864
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.91 E-value=1.7e-23 Score=194.08 Aligned_cols=152 Identities=22% Similarity=0.456 Sum_probs=117.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
+|+|+|++|||||||+++|++..+.. ..+|.|.++. .+.+. ..+.+.+|||||++.+...+..++..+|++|+|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999998654 4677775553 33333 35789999999999998888999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHH------HHHHHhCCeEEEEcCCCCC
Q psy8073 474 VTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGE------KLAQQYGAIFMETSSKSGD 546 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~------~l~~~~~~~~~e~Sa~~g~ 546 (593)
++++.++..+..|+..+.... ..++|+++|+||+|+... ....... .++...++.+++|||++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--------LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--------cCHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 999999888888777665432 246999999999998642 1111111 1122234468999999999
Q ss_pred CHHHHHHHHHH
Q psy8073 547 NILDALIALSR 557 (593)
Q Consensus 547 gi~~l~~~L~~ 557 (593)
||++++.+|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 118
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=6.2e-23 Score=205.94 Aligned_cols=149 Identities=22% Similarity=0.485 Sum_probs=125.3
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECC-------------eeEEEEEEecCCchh
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDE-------------RNVALQLWDTAGQER 453 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~-------------~~~~~~l~DTaG~e~ 453 (593)
..+...+||+|+|+.|||||||+++|+++.|...+.+|+|.++..+.+.+++ ..+.+.||||+|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3456679999999999999999999999998888999999999888877753 458899999999999
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcC------------CCCcEEEEEeCCCCCCcccccccccc
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE------------NSIPIVICANKVDLRADAQAKGVKCI 521 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~------------~~~piivV~NK~Dl~~~~~~~~~~~v 521 (593)
|..++..+++++|++|+|||++++.+|..+..|+..|..... .++|+||||||+||...........+
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 999999999999999999999999999999999999987632 25899999999999643110011124
Q ss_pred CHHHHHHHHHHhCC
Q psy8073 522 DREVGEKLAQQYGA 535 (593)
Q Consensus 522 ~~~~~~~l~~~~~~ 535 (593)
..++++.+++..++
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 67899999998874
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.91 E-value=7.7e-24 Score=196.23 Aligned_cols=152 Identities=24% Similarity=0.424 Sum_probs=114.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
||+|+|++|||||||+++|..+.+.. +.+|+|.++. .+.. ..+.++||||||++.|..++..++..+|++|+|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998887643 4567665543 3333 34889999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHH-HHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH----HHhCCeEEEEcCCCCCCH
Q psy8073 474 VTNERSFNSVKNWVEA-VEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~-i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~----~~~~~~~~e~Sa~~g~gi 548 (593)
++++.++.....|+.. +......++|+++|+||+|+.... ........+. ...+..+++|||++|.||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-------SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-------CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 9999888766665443 333333468999999999986431 0111111111 112346999999999999
Q ss_pred HHHHHHHHH
Q psy8073 549 LDALIALSR 557 (593)
Q Consensus 549 ~~l~~~L~~ 557 (593)
++++++|++
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999875
No 120
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.90 E-value=1.8e-23 Score=195.77 Aligned_cols=157 Identities=22% Similarity=0.348 Sum_probs=121.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
+|+++|++|||||||+++|++. +...+.+|+|.+. ..+..+ .+.+++|||||++.+..++..++++||++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999987 6777888988653 445554 4889999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh--CCeEEEEcCCCC-----
Q psy8073 474 VTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY--GAIFMETSSKSG----- 545 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~--~~~~~e~Sa~~g----- 545 (593)
++++.++..+..|+..+.... ..++|+++|+||+|+....... ..+....+..++... .+.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~--~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGA--DVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH--HHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 999999999998888776542 2468999999999997542100 001111122333222 346788999998
Q ss_pred -CCHHHHHHHHHH
Q psy8073 546 -DNILDALIALSR 557 (593)
Q Consensus 546 -~gi~~l~~~L~~ 557 (593)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999964
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.90 E-value=5.2e-23 Score=196.76 Aligned_cols=156 Identities=21% Similarity=0.322 Sum_probs=124.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+++|+++.+ ..+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 4568999999999999999999998875 3566676543 34555665 78999999999999888899999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH----------------
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ---------------- 532 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~---------------- 532 (593)
+|||+++..++.....|+..+.... ..+.|+++|+||+|+... +.......+...
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--------VSEEELRQALGLYGTTTGKGVSLKVSGI 163 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--------cCHHHHHHHhCcccccccccccccccCc
Confidence 9999999988887777777665433 356899999999998642 344445444432
Q ss_pred hCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 533 YGAIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 533 ~~~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
..+.+++|||++|.|+.++|.+|++.
T Consensus 164 ~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 164 RPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eeEEEEEeEecCCCChHHHHHHHHhh
Confidence 22458999999999999999999865
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.90 E-value=9.7e-23 Score=190.42 Aligned_cols=152 Identities=24% Similarity=0.427 Sum_probs=116.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc------ccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVF------LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~------~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
+|+|+|++|||||||+++|++... ...+.+|.+.++. .+.+++ +.+.+|||||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976421 2344566655553 344554 789999999999999889999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH-------hCCeEEE
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ-------YGAIFME 539 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~-------~~~~~~e 539 (593)
+|+|||++++.++.....|+..+... ...++|+++|+||+|+... +.......+... .++++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--------LSVEEIKEVFQDKAEEIGRRDCLVLP 148 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--------CCHHHHHHHhccccccccCCceEEEE
Confidence 99999999998888888777666543 2346899999999998643 222333333221 2457999
Q ss_pred EcCCCCCCHHHHHHHHHH
Q psy8073 540 TSSKSGDNILDALIALSR 557 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~ 557 (593)
+||++|.|+++++.+|+.
T Consensus 149 ~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 149 VSALEGTGVREGIEWLVE 166 (167)
T ss_pred eeCCCCcCHHHHHHHHhc
Confidence 999999999999999864
No 123
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=1.6e-22 Score=191.32 Aligned_cols=154 Identities=23% Similarity=0.339 Sum_probs=117.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc-------cccCCCC------ccceeeEEEEEEE-----CCeeEEEEEEecCCchhhh
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEV-------FLNKLGS------TLGVDFQMKTIRV-----DERNVALQLWDTAGQERFR 455 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~-------~~~~~~~------t~g~~~~~~~~~~-----~~~~~~~~l~DTaG~e~~~ 455 (593)
+|+++|++|||||||+++|++.. +...+.+ +.|.++......+ ++..+.+.||||||++.|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 2222222 3355665554443 5667889999999999998
Q ss_pred hhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC
Q psy8073 456 SMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA 535 (593)
Q Consensus 456 ~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~ 535 (593)
..+..+++.||++|+|||++++.++.....|.... ..++|+++|+||+|+... ........+++.+++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~--------~~~~~~~~~~~~~~~ 149 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSA--------DPERVKQQIEDVLGL 149 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcC--------CHHHHHHHHHHHhCC
Confidence 88999999999999999999988777776665432 235899999999998542 112233455555665
Q ss_pred ---eEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 536 ---IFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 536 ---~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
.++++||++|.||++++.+|.+.+
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 389999999999999999998765
No 124
>PTZ00099 rab6; Provisional
Probab=99.89 E-value=3.4e-22 Score=188.29 Aligned_cols=141 Identities=38% Similarity=0.632 Sum_probs=127.1
Q ss_pred CccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHc
Q psy8073 415 EVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT 494 (593)
Q Consensus 415 ~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~ 494 (593)
+.|...+.+|+|.++..+.+.+++..+.+.||||||+++|..++..++++||++|+|||++++.+|..+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 495 ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 495 ~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
..++|+|||+||+||... +.+...++..++..+++.|++|||++|.||.++|.+|++.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~------~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDL------RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccc------cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 566899999999999643 3467778888888889999999999999999999999999876
No 125
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=2.3e-23 Score=222.37 Aligned_cols=189 Identities=20% Similarity=0.250 Sum_probs=134.1
Q ss_pred CCCCCCCCchhhhcCCCCCCCCCCcccccCCCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--ee
Q psy8073 351 YDYNKRDYPELRRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--VD 428 (593)
Q Consensus 351 ~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~~ 428 (593)
|||+|++.+. ..+...+..+...+..++... .......+++|+|+|+||||||||+|+|++..+ ..++..+| .+
T Consensus 165 iDf~ee~~~~--~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd 240 (442)
T TIGR00450 165 IDYEEDDDEQ--DSLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRD 240 (442)
T ss_pred CCcCCCCccH--HHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEE
Confidence 8999987543 122222333334444444444 335667889999999999999999999998742 22223333 45
Q ss_pred eEEEEEEECCeeEEEEEEecCCchhhh--------hhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcE
Q psy8073 429 FQMKTIRVDERNVALQLWDTAGQERFR--------SMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPI 500 (593)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~DTaG~e~~~--------~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi 500 (593)
+....+.+++ +++.||||||+..+. .....+++.||++|+|||++++.++... |+..+. ..++|+
T Consensus 241 ~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~pi 313 (442)
T TIGR00450 241 VVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPF 313 (442)
T ss_pred EEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCE
Confidence 5556666666 778999999975432 2345788999999999999998887765 665543 235899
Q ss_pred EEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 501 VICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 501 ivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
|+|+||+|+... ....++..++.+++++||++ .||.+++..|.+.+.+..
T Consensus 314 IlV~NK~Dl~~~------------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 314 ILVLNKIDLKIN------------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred EEEEECccCCCc------------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 999999999532 11234556677889999998 699999999999887643
No 126
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=7.5e-24 Score=227.45 Aligned_cols=188 Identities=22% Similarity=0.290 Sum_probs=136.6
Q ss_pred CCCCCCCCc-hhhhcCCCCCCCCCCcccccCCCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--e
Q psy8073 351 YDYNKRDYP-ELRRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--V 427 (593)
Q Consensus 351 ~d~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~ 427 (593)
|||++++.+ ..++.....+..+...+..+..........+.+++|+|+|+||||||||+|+|++..+ ..+++.+| .
T Consensus 173 iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~ 251 (449)
T PRK05291 173 IDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTR 251 (449)
T ss_pred ccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCccc
Confidence 899998764 3344445555555555655555555556667889999999999999999999998753 12223333 4
Q ss_pred eeEEEEEEECCeeEEEEEEecCCchhhhh--------hhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc
Q psy8073 428 DFQMKTIRVDERNVALQLWDTAGQERFRS--------MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP 499 (593)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~DTaG~e~~~~--------~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p 499 (593)
++....+.+++ +++.||||||++.+.. .+..++..||++|+|||++++.++.....|.. ..++|
T Consensus 252 d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~p 323 (449)
T PRK05291 252 DVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKP 323 (449)
T ss_pred ccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCC
Confidence 45555566665 7899999999765422 24557899999999999999988876554543 33589
Q ss_pred EEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 500 iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
+++|+||+|+..... +. ...+.++++|||++|.|+++++.+|...+..
T Consensus 324 iiiV~NK~DL~~~~~------~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 324 VIVVLNKADLTGEID------LE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred cEEEEEhhhccccch------hh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 999999999964311 10 2345678999999999999999999998864
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=3.4e-22 Score=190.14 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=120.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.++|+|+|.+|||||||+++|.+..+. .+.+|.+.+. ..+.+++ +.+.+|||||++.+...+..++..+|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 55699999999999999999999988754 3456654433 3444444 88999999999999889999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH------------hCCe
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ------------YGAI 536 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~------------~~~~ 536 (593)
+|||++++.++.....|+..+... ...++|+++|+||+|+... +..+++...... ....
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--------~~~~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--------ASEDELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--------CCHHHHHHHcCCCcccccccccCCceeE
Confidence 999999999998888777665432 2246899999999998643 333333322110 1234
Q ss_pred EEEEcCCCCCCHHHHHHHHHHH
Q psy8073 537 FMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 537 ~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
+++|||++|.|+++++++|...
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 8999999999999999999754
No 128
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=3.4e-23 Score=215.02 Aligned_cols=186 Identities=20% Similarity=0.247 Sum_probs=131.7
Q ss_pred CCchhhhcCCCCCCCCCCcccccCCCCCCCCCC---CcceEEEEEcCCCCcHHHHHHHHhcCccc--cCCCCccceeeEE
Q psy8073 357 DYPELRRQHSNKSDSQSTPLLSLSNSLEPTGEP---DRAFKIVFAGDAAVGKSCFIYRFSKEVFL--NKLGSTLGVDFQM 431 (593)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~kI~ivG~~nvGKSSLln~l~~~~~~--~~~~~t~g~~~~~ 431 (593)
+++..++.+..++..+...+..+.......... ...++|+|+|+||||||||+|+|++..+. ..+.+| .++..
T Consensus 151 ~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT--~d~~~ 228 (351)
T TIGR03156 151 QLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFAT--LDPTT 228 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccc--cCCEE
Confidence 455555556666666665555544333333222 35699999999999999999999998643 233444 55666
Q ss_pred EEEEECCeeEEEEEEecCCc---------hhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEE
Q psy8073 432 KTIRVDERNVALQLWDTAGQ---------ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVI 502 (593)
Q Consensus 432 ~~~~~~~~~~~~~l~DTaG~---------e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiv 502 (593)
..+.+.+ +..+.||||||. +.|.. +...+.+||++|+|||++++.++..+..|...+......++|+|+
T Consensus 229 ~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIl 306 (351)
T TIGR03156 229 RRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLL 306 (351)
T ss_pred EEEEeCC-CceEEEEecCcccccCCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEE
Confidence 6676743 268999999996 33433 334688999999999999998888887788777776655689999
Q ss_pred EEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 503 CANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 503 V~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
|+||+|+.... .+ ..+. .....+++|||++|.|+++++.+|...
T Consensus 307 V~NK~Dl~~~~------~v-----~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 307 VYNKIDLLDEP------RI-----ERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEEeecCCChH------hH-----HHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 99999996421 11 1111 112458899999999999999998764
No 129
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.89 E-value=2.2e-22 Score=186.28 Aligned_cols=151 Identities=21% Similarity=0.374 Sum_probs=119.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
||+|+|++|||||||++++++.. ...+.+|.|..+. .+.++. +.+.+|||||++.+...+..++..+|++|+|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVE--TVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceE--EEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 69999999999999999999987 4456677666554 344443 789999999999998889999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHH-H----HHhCCeEEEEcCCCCCC
Q psy8073 474 VTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKL-A----QQYGAIFMETSSKSGDN 547 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l-~----~~~~~~~~e~Sa~~g~g 547 (593)
++++.++..+..|+..+.... ..+.|+++|+||+|+.... ........ . ....++++++||++|.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--------SVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--------CHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 999999988888777665532 3568999999999986531 11112211 1 12345799999999999
Q ss_pred HHHHHHHHHH
Q psy8073 548 ILDALIALSR 557 (593)
Q Consensus 548 i~~l~~~L~~ 557 (593)
++++|.+|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.88 E-value=8e-22 Score=181.58 Aligned_cols=152 Identities=25% Similarity=0.385 Sum_probs=119.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeC
Q psy8073 395 IVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDV 474 (593)
Q Consensus 395 I~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~ 474 (593)
|+|+|++|||||||+|+|++..+...+.+|.|.++.. +..++ +.+.+|||||++.+...+..++..+|++|+|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 8999999999999999999999888888888766653 33333 7899999999999998899999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHH----HHHhCCeEEEEcCCCCCCHH
Q psy8073 475 TNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKL----AQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 475 ~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l----~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+++.++.....|+..+... ...++|+++|+||+|+..... . ......+ ....+++++++||++|.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------V-DELIEQMNLKSITDREVSCYSISCKEKTNID 150 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC------H-HHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence 9998888877766655432 224689999999999865311 0 1111111 11223578999999999999
Q ss_pred HHHHHHHH
Q psy8073 550 DALIALSR 557 (593)
Q Consensus 550 ~l~~~L~~ 557 (593)
+++.+|.+
T Consensus 151 ~l~~~l~~ 158 (159)
T cd04159 151 IVLDWLIK 158 (159)
T ss_pred HHHHHHhh
Confidence 99999865
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=2.4e-21 Score=181.17 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh---------hhhHhhcc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR---------SMTKNYFR 463 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~---------~~~~~~~~ 463 (593)
++|+|+|++|||||||+|+|++..+.....+....++....+.. .++.++||||||+.... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 47999999999999999999998753211111112232223323 34889999999973210 01111123
Q ss_pred CCCEEEEEEeCCChhcH--HHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 464 RADGVMLLYDVTNERSF--NSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
.+|++|+|||+++..++ .....|+..+.... .++|+|+|+||+|+.... .+.. ...+....+..+++||
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~------~~~~--~~~~~~~~~~~~~~~S 149 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFE------DLSE--IEEEEELEGEEVLKIS 149 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchh------hHHH--HHHhhhhccCceEEEE
Confidence 46999999999987653 55667887776543 358999999999996531 1111 3445555567899999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRHV 559 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l 559 (593)
|++|.|+++++.+|.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 150 TLTEEGVDEVKNKACELL 167 (168)
T ss_pred ecccCCHHHHHHHHHHHh
Confidence 999999999999998875
No 132
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=2.7e-22 Score=212.99 Aligned_cols=197 Identities=19% Similarity=0.195 Sum_probs=134.9
Q ss_pred CCCCCCCchhhhcCCCCCCCCCCcccccCCCCCCCCCCC---cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCcccee
Q psy8073 352 DYNKRDYPELRRQHSNKSDSQSTPLLSLSNSLEPTGEPD---RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVD 428 (593)
Q Consensus 352 d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~ 428 (593)
.++|..++..++.+...+..+...+..+..........+ ..++|+|+|+||||||||+|+|++..+.....+..+.+
T Consensus 154 g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld 233 (426)
T PRK11058 154 GPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLD 233 (426)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcC
Confidence 467777776666666666666555554443333222222 23699999999999999999999876542222222245
Q ss_pred eEEEEEEECCeeEEEEEEecCCchh---------hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc
Q psy8073 429 FQMKTIRVDERNVALQLWDTAGQER---------FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP 499 (593)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~DTaG~e~---------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p 499 (593)
.....+.+.+. ..+.||||||..+ |.. +...++.||++|+|+|++++.++..+..|...+......++|
T Consensus 234 ~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p 311 (426)
T PRK11058 234 PTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP 311 (426)
T ss_pred CceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC
Confidence 55555656542 2688999999632 322 334578999999999999998888877677666666555699
Q ss_pred EEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe-EEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 500 iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~-~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
+|+|+||+|+..... .. .. ....+.+ +++|||++|.||++++.+|...+..
T Consensus 312 vIiV~NKiDL~~~~~-------~~--~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 312 TLLVMNKIDMLDDFE-------PR--ID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred EEEEEEcccCCCchh-------HH--HH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 999999999864210 00 01 1123444 5889999999999999999998864
No 133
>KOG0073|consensus
Probab=99.87 E-value=6.2e-21 Score=167.98 Aligned_cols=165 Identities=26% Similarity=0.432 Sum_probs=133.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
.++.++|.|+|..|+||||++++|.+.. .....||.| |..+++.+++ +.++|||.+|+..+++.++.||..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4558999999999999999999999887 566778854 7777888777 8999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHH-HHHHHcCCCCcEEEEEeCCCCCCccccccccccCH-HHHHHHHHHhCCeEEEEcCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVE-AVEEVTENSIPIVICANKVDLRADAQAKGVKCIDR-EVGEKLAQQYGAIFMETSSKSGD 546 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~-~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~-~~~~~l~~~~~~~~~e~Sa~~g~ 546 (593)
|+|||.+|+..++.....+. .+..-.-.+.|++|++||.|+...-. ..++.. .....+++...++++-|||.+|.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~---~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS---LEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---HHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 99999999998887766333 33333446689999999999975411 112221 23445667778899999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy8073 547 NILDALIALSRHVYV 561 (593)
Q Consensus 547 gi~~l~~~L~~~l~~ 561 (593)
++.+-+.||+..+..
T Consensus 165 ~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 165 DLLEGIDWLCDDLMS 179 (185)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999998876
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.87 E-value=1.5e-21 Score=182.76 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccce--eeEEEEEEECCeeEEEEEEecCCch----hhhhhhHh---hccC
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV--DFQMKTIRVDERNVALQLWDTAGQE----RFRSMTKN---YFRR 464 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~--~~~~~~~~~~~~~~~~~l~DTaG~e----~~~~~~~~---~~~~ 464 (593)
.|+|+|++|||||||+|+|.+... .++...+. +.....+.+++ ...+.||||||+. .+..+... .+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 689999999999999999987653 12222222 22222333343 2479999999963 22222333 3456
Q ss_pred CCEEEEEEeCCCh-hcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH-hCCeEEEE
Q psy8073 465 ADGVMLLYDVTNE-RSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ-YGAIFMET 540 (593)
Q Consensus 465 ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~-~~~~~~e~ 540 (593)
+|++|+|||++++ .++..+..|...+..... ..+|+++|+||+|+.... .+ ......+... .+.++++|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~------~~-~~~~~~~~~~~~~~~~~~~ 151 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE------EL-FELLKELLKELWGKPVFPI 151 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch------hh-HHHHHHHHhhCCCCCEEEE
Confidence 9999999999999 789999999988877643 358999999999986531 11 2233334444 36789999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy8073 541 SSKSGDNILDALIALSRH 558 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~ 558 (593)
||++|.|+.+++.+|.+.
T Consensus 152 Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 152 SALTGEGLDELLRKLAEL 169 (170)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999998864
No 135
>KOG1029|consensus
Probab=99.87 E-value=1.2e-20 Score=198.82 Aligned_cols=265 Identities=21% Similarity=0.243 Sum_probs=199.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCC
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAG 82 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 82 (593)
+-+|+.+|+.+|+...||++...-+.+|...+++...+..||...|+|+||+|+.+||+.+|+.+....++...+...+.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~sGq~lP~tlP~ 273 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKSGQPLPKTLPP 273 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCh
Confidence 45799999999999999999999999999999999999999999999999999999999999988766666666666666
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHh-hhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHH----------------
Q psy8073 83 AMSSEGPERRNSDVQNAWSLLLAG-IGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEG---------------- 145 (593)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~-lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~---------------- 145 (593)
+..+|.+....+. . ....+..+ +|.. -.+..++. | .-..||+
T Consensus 274 E~Vpp~~r~~rs~-~-sis~~~p~~~~~~----------------~aep~kkl--P-~~~TFEDKrkeNy~kGqaELerR 332 (1118)
T KOG1029|consen 274 ELVPPSFRSSRSA-N-SISGLEPGGVGVV----------------DAEPPKKL--P-APVTFEDKRKENYEKGQAELERR 332 (1118)
T ss_pred hhcCcccccccCC-C-CccccccCccccc----------------ccCccccC--C-CCcchhhhhHHhHhhhhHHHHHH
Confidence 6666654333220 0 01111100 0000 00010000 1 0012222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--HHHHH
Q psy8073 146 --ALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAK----YEQEKAIL--MRKME 217 (593)
Q Consensus 146 --~i~~~~~~i~~~~~e~e~le~~l~r~~~~~~~~~~~l~eEmdqq~~~~~~~~~~ee~~k----~e~~~~el--~~~~e 217 (593)
++..-...-++....+|+.|.+-+.++....++-++++-|.+.+.+++.++.|+|+++| .|++..|| +||++
T Consensus 333 Rq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqle 412 (1118)
T KOG1029|consen 333 RQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLE 412 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566677778888877777888888888888888888888888888766 68888888 56799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 218 HETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEG 288 (593)
Q Consensus 218 ~e~~elq~~~~~~~~~e~~~~~~~~~~~~~~~e~~~l~~en~~L~~~l~~~q~~l~~~~~el~~l~~~~~~ 288 (593)
||..++++++.+..+.++.+-.+++.++.+..+++.|+...++|.++|++.+..+...+.+++.+...++.
T Consensus 413 wErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~ 483 (1118)
T KOG1029|consen 413 WERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQREL 483 (1118)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999988877777766666554443
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=4.4e-21 Score=185.64 Aligned_cols=154 Identities=21% Similarity=0.276 Sum_probs=114.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccC--CCCccceeeEEEEEEECCeeEEEEEEecCCch---------hhhhhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK--LGSTLGVDFQMKTIRVDERNVALQLWDTAGQE---------RFRSMT 458 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~--~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e---------~~~~~~ 458 (593)
...++|+|+|++|||||||+|++++..+... +.+| .+.....+.+++. ..+.||||||.. .|...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t--~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~- 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFAT--LDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST- 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCcccee--ccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-
Confidence 3458999999999999999999998864322 2333 3344444445442 379999999962 22222
Q ss_pred HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEE
Q psy8073 459 KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFM 538 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 538 (593)
...+..+|++|+|+|++++.++..+..|...+......++|+++|+||+|+..... + .......+.+++
T Consensus 115 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------~-----~~~~~~~~~~~~ 183 (204)
T cd01878 115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE------L-----EERLEAGRPDAV 183 (204)
T ss_pred HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH------H-----HHHhhcCCCceE
Confidence 23467899999999999999888888888888776666789999999999965411 1 123344566899
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q psy8073 539 ETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~ 558 (593)
+|||++|.|+.+++.+|...
T Consensus 184 ~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 184 FISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEEcCCCCCHHHHHHHHHhh
Confidence 99999999999999998765
No 137
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.87 E-value=4.5e-21 Score=180.31 Aligned_cols=153 Identities=22% Similarity=0.413 Sum_probs=117.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....++|+|+|++|||||||++++++..+. .+.+|.|.++. .+.+++ ..+.+|||||+..+...+..+++.+|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345799999999999999999999988653 46677775443 444554 7899999999998888888899999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHH-HcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC--------eEEE
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEE-VTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA--------IFME 539 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~-~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~--------~~~e 539 (593)
|+|||+++..++.....|+..+.. ....++|+++|+||+|+.... .. ..+....+. .+++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------~~---~~i~~~l~~~~~~~~~~~~~~ 154 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--------PA---EEIAEALNLHDLRDRTWHIQA 154 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--------CH---HHHHHHcCCcccCCCeEEEEE
Confidence 999999998888877766555433 233469999999999986431 11 112222222 3689
Q ss_pred EcCCCCCCHHHHHHHHHH
Q psy8073 540 TSSKSGDNILDALIALSR 557 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~ 557 (593)
|||++|.|+++++++|++
T Consensus 155 ~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 155 CSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred eECCCCCCHHHHHHHHhc
Confidence 999999999999999975
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.86 E-value=1.4e-21 Score=177.65 Aligned_cols=134 Identities=22% Similarity=0.294 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc-----hhhhhhhHhhccCCCEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ-----ERFRSMTKNYFRRADGV 468 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~-----e~~~~~~~~~~~~ad~v 468 (593)
||+|+|++|||||||+|+|++..+. +.+|.+.++. -.+|||||+ +.|..+.. .+++||++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYN------------DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEc------------CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999988652 3344433322 168999997 23444433 58999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~g 547 (593)
|+|||++++.++.. ..|...+ ..|+|+|+||+|+... ....+.+..++...+. +++++||++|.|
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-------DVDIERAKELLETAGAEPIFEISSVDEQG 132 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-------ccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 99999999998765 3454322 2499999999998642 1344556667767666 799999999999
Q ss_pred HHHHHHHHH
Q psy8073 548 ILDALIALS 556 (593)
Q Consensus 548 i~~l~~~L~ 556 (593)
++++|.+|.
T Consensus 133 i~~l~~~l~ 141 (142)
T TIGR02528 133 LEALVDYLN 141 (142)
T ss_pred HHHHHHHHh
Confidence 999999874
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=4.3e-21 Score=178.29 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC---ccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKE---VFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~---~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
.|+|+|++|||||||+|+|++. .+.....++.+.+.....+.+.. +..+.+|||||+++|......++..||++|+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999999864 22222222222333333444442 3689999999999997777788899999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH---hCCeEEEEcCCCCCC
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ---YGAIFMETSSKSGDN 547 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~---~~~~~~e~Sa~~g~g 547 (593)
|||+++....+. ..++..+.... ..|+|+|+||+|+..... .. ............ .+.++++|||++|.|
T Consensus 81 V~d~~~~~~~~~-~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 81 VVAADEGIMPQT-REHLEILELLG--IKRGLVVLTKADLVDEDW---LE-LVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEECCCCccHhH-HHHHHHHHHhC--CCcEEEEEECccccCHHH---HH-HHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 999987322111 11222222221 249999999999965310 00 111222233333 356899999999999
Q ss_pred HHHHHHHHHH
Q psy8073 548 ILDALIALSR 557 (593)
Q Consensus 548 i~~l~~~L~~ 557 (593)
+++++..|..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 140
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.86 E-value=9.3e-21 Score=178.66 Aligned_cols=158 Identities=25% Similarity=0.441 Sum_probs=124.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.++|+++|.+|||||||++++..+.+. .+.||.|.. ...+.+++ +.+.+||.+|+..++..+..|+.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc--cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 367899999999999999999999987643 366776654 44566665 8899999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHH-HcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH------HHhCCeEEEEc
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEE-VTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA------QQYGAIFMETS 541 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~-~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~------~~~~~~~~e~S 541 (593)
|||+|+++...+......+..+.. ....++|++|++||+|+... +...+..... ....+.++.||
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--------~~~~~i~~~l~l~~l~~~~~~~v~~~s 157 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--------MSEEEIKEYLGLEKLKNKRPWSVFSCS 157 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--------STHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--------chhhHHHhhhhhhhcccCCceEEEeee
Confidence 999999999888777765555433 23356999999999998754 2333333221 12344689999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRHV 559 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l 559 (593)
|.+|.|+.+.++||...+
T Consensus 158 a~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 158 AKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHhcC
Confidence 999999999999998764
No 141
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=183.36 Aligned_cols=171 Identities=35% Similarity=0.543 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+++|.+..|...+.+|++..+........+..+.+.+|||+|+++|+.++..|+.+++++++||
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999999999999999999998889999988888888877766788999999999999999999999999999999
Q ss_pred eCCC-hhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccc------cccCHHHHHHHHHH---hCCeEEEEcC
Q psy8073 473 DVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGV------KCIDREVGEKLAQQ---YGAIFMETSS 542 (593)
Q Consensus 473 D~~~-~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~------~~v~~~~~~~l~~~---~~~~~~e~Sa 542 (593)
|.++ ..+++....|...+........|+++|+||+|+......... +.+........... ....+++|||
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9999 555566677999998888667999999999999765321100 12222222222222 2233899999
Q ss_pred C--CCCCHHHHHHHHHHHHHhhc
Q psy8073 543 K--SGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 543 ~--~g~gi~~l~~~L~~~l~~~~ 563 (593)
+ ++.||.+++..+.+.+....
T Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 166 KSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhh
Confidence 9 99999999999999886543
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.86 E-value=2e-20 Score=171.61 Aligned_cols=157 Identities=25% Similarity=0.453 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+++|++|+|||||+|+|+...+...+.++.+.++....+.+++..+.+.+|||||+..+...+..+++.++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999999877777778788887777778876788999999999999888888999999999999
Q ss_pred eCCCh-hcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 473 DVTNE-RSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 473 D~~~~-~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
|+... .++.... .|...+......+.|+++|+||+|+.... +.......+......+++++||++|.|+.+
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-------LKTHVAFLFAKLNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-------hhHHHHHHHhhccCCceEEeecCCCCCHHH
Confidence 99877 6666655 57777766655478999999999996531 333344444444456799999999999999
Q ss_pred HHHHHH
Q psy8073 551 ALIALS 556 (593)
Q Consensus 551 l~~~L~ 556 (593)
++.+|.
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 998863
No 143
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=1.4e-20 Score=189.84 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=113.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh--------hhhhHhhccCC
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF--------RSMTKNYFRRA 465 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~--------~~~~~~~~~~a 465 (593)
+|+|+|.||||||||+|+|++..+ ..+++.++++..............+.||||||+... ...+..++..|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI-SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE-eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 699999999999999999999864 233444444433222222222367999999996422 22345678899
Q ss_pred CEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCC
Q psy8073 466 DGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKS 544 (593)
Q Consensus 466 d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~ 544 (593)
|++++|+|+++..++. ..|+..+.. .+.|+++|+||+|+.... ........+....+. .++++||++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-------~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-------KLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-------HHHHHHHHHHhhcCCCceEEEecCC
Confidence 9999999999877664 334444433 358999999999996321 112233344444443 689999999
Q ss_pred CCCHHHHHHHHHHHHHhhccccccCCC
Q psy8073 545 GDNILDALIALSRHVYVFIPCVYLKDL 571 (593)
Q Consensus 545 g~gi~~l~~~L~~~l~~~~~~~~~~~~ 571 (593)
|.|+++++.+|...+.. .+.+|+.+.
T Consensus 149 g~gi~~L~~~l~~~l~~-~~~~~~~~~ 174 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPE-GPFRYPEDY 174 (270)
T ss_pred CCCHHHHHHHHHHhCCC-CCCCCCCcc
Confidence 99999999999988865 666666554
No 144
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=4.5e-20 Score=190.17 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceee--EEEEEEECCeeEEEEEEecCCchh-------hhhhhHhhcc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDF--QMKTIRVDERNVALQLWDTAGQER-------FRSMTKNYFR 463 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~--~~~~~~~~~~~~~~~l~DTaG~e~-------~~~~~~~~~~ 463 (593)
..|+|||.||||||||+|+|++.... ....+++|. ....+.+. ....+++|||||+-. .......++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 58999999999999999999876421 222222333 33333342 235799999999521 2223344567
Q ss_pred CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 464 RADGVMLLYDVTNERSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
.++++|+|||+++..+++.+..|...+..+.. .++|+|||+||+|+.... .+.......+....+..+++||
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------~~~~~~~~~~~~~~~~~i~~iS 309 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE------EEREKRAALELAALGGPVFLIS 309 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch------hHHHHHHHHHHHhcCCCEEEEE
Confidence 89999999999988889999999999987754 468999999999996531 1222334444455667899999
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy8073 542 SKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~ 561 (593)
|+++.||++++.+|...+.+
T Consensus 310 Aktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 310 AVTGEGLDELLRALWELLEE 329 (335)
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988865
No 145
>PRK15494 era GTPase Era; Provisional
Probab=99.84 E-value=3.1e-20 Score=192.69 Aligned_cols=165 Identities=19% Similarity=0.276 Sum_probs=116.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceee--EEEEEEECCeeEEEEEEecCCch-hhhh-------hhH
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDF--QMKTIRVDERNVALQLWDTAGQE-RFRS-------MTK 459 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~--~~~~~~~~~~~~~~~l~DTaG~e-~~~~-------~~~ 459 (593)
.+.++|+|+|+||||||||+|+|++..+. .+++++++++ ....+..++ ..+.||||||+. .+.. .+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 45689999999999999999999988753 3444444443 333444554 678999999973 2222 223
Q ss_pred hhccCCCEEEEEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC--Ce
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG--AI 536 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~--~~ 536 (593)
.++..||++|+|+|+++. +.... .|+..+... +.|+|+|+||+|+... . ......+....+ ..
T Consensus 127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~--------~-~~~~~~~l~~~~~~~~ 192 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK--------Y-LNDIKAFLTENHPDSL 192 (339)
T ss_pred HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc--------c-HHHHHHHHHhcCCCcE
Confidence 457899999999998763 33443 355555432 3678899999998532 1 223333333333 57
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhhccccccCCCC
Q psy8073 537 FMETSSKSGDNILDALIALSRHVYVFIPCVYLKDLP 572 (593)
Q Consensus 537 ~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~~~~~~ 572 (593)
++++||++|.|+++++.+|...+.. .+.+|+.+..
T Consensus 193 i~~iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~~ 227 (339)
T PRK15494 193 LFPISALSGKNIDGLLEYITSKAKI-SPWLYAEDDI 227 (339)
T ss_pred EEEEeccCccCHHHHHHHHHHhCCC-CCCCCCCCCC
Confidence 9999999999999999999998876 7777777763
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=181.30 Aligned_cols=154 Identities=26% Similarity=0.383 Sum_probs=106.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC-----------chhhhhhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG-----------QERFRSMT 458 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG-----------~e~~~~~~ 458 (593)
...++|+|+|++|||||||+|+|++..+. ....+|+++....+.+. .+.+||||| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR--VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 45689999999999999999999988754 33444667666555444 489999999 56777666
Q ss_pred Hhhcc----CCCEEEEEEeCCChhcHHHHHHHH---------HHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHH
Q psy8073 459 KNYFR----RADGVMLLYDVTNERSFNSVKNWV---------EAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREV 525 (593)
Q Consensus 459 ~~~~~----~ad~vi~v~D~~~~~s~~~~~~~~---------~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~ 525 (593)
..++. .++++++|+|.++...+ ...|. ..+......++|+++|+||+|+.... ...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---------~~~ 149 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR---------DEV 149 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH---------HHH
Confidence 66654 45788888887643211 01121 11222223468999999999996431 223
Q ss_pred HHHHHHHhCC---------eEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 526 GEKLAQQYGA---------IFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 526 ~~~l~~~~~~---------~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
...++..++. ++++|||++| ||++++.+|.+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 4445555554 4799999999 999999999987754
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=2.5e-20 Score=178.97 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CccccCC------------CCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSK--EVFLNKL------------GSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMT 458 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~--~~~~~~~------------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~ 458 (593)
-+|+|+|++|||||||+++|+. +.|.... ..+.|.++......+++..+.+.||||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999997 4433322 2346677777777777677899999999999999899
Q ss_pred HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH-------H
Q psy8073 459 KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA-------Q 531 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~-------~ 531 (593)
..+++.+|++|+|||+++.. +.....|+..+. ..++|+++|+||+|+..... . ........+. .
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~----~-~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL---ELGLKPIVVINKIDRPDARP----E-EVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH---HcCCCEEEEEECCCCCCCCH----H-HHHHHHHHHHHHhCCccc
Confidence 99999999999999998753 222333433332 24589999999999964311 0 1122223332 1
Q ss_pred HhCCeEEEEcCCCCCCHHHH
Q psy8073 532 QYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 532 ~~~~~~~e~Sa~~g~gi~~l 551 (593)
..+++++++||++|.|+.++
T Consensus 154 ~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 154 QLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred cCccCEEEeehhcccccccc
Confidence 23678999999999887444
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.84 E-value=5.6e-21 Score=173.79 Aligned_cols=148 Identities=23% Similarity=0.335 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh------hhhhHhhc--cC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF------RSMTKNYF--RR 464 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~------~~~~~~~~--~~ 464 (593)
++|+++|.||||||||+|+|++.. ...+.++|++...+...+...+..+.|+||||.-.+ ..++..++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 689999999999999999999987 335667777777666555433378999999993111 23334443 68
Q ss_pred CCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCC
Q psy8073 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKS 544 (593)
Q Consensus 465 ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~ 544 (593)
.|++|+|+|+++...-.. ........++|+|+|+||+|+..... ..+ ....+++.++++++++||++
T Consensus 79 ~D~ii~VvDa~~l~r~l~------l~~ql~e~g~P~vvvlN~~D~a~~~g----~~i---d~~~Ls~~Lg~pvi~~sa~~ 145 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY------LTLQLLELGIPVVVVLNKMDEAERKG----IEI---DAEKLSERLGVPVIPVSART 145 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH------HHHHHHHTTSSEEEEEETHHHHHHTT----EEE----HHHHHHHHTS-EEEEBTTT
T ss_pred CCEEEEECCCCCHHHHHH------HHHHHHHcCCCEEEEEeCHHHHHHcC----CEE---CHHHHHHHhCCCEEEEEeCC
Confidence 999999999986432111 22333344699999999999864311 112 34567788899999999999
Q ss_pred CCCHHHHHHHH
Q psy8073 545 GDNILDALIAL 555 (593)
Q Consensus 545 g~gi~~l~~~L 555 (593)
|.|+++++++|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=2e-20 Score=174.73 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC-CeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD-ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~-~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
+.|+|+|++|||||||+|+|+...+.....++...++....+..+ +.+..+.||||||++.|...+..++..+|++|+|
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 369999999999999999999887655433332233333333333 1357899999999999988888889999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH------HhCCeEEEEcCCCC
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ------QYGAIFMETSSKSG 545 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~------~~~~~~~e~Sa~~g 545 (593)
+|++++........ +..+. ..++|+++|+||+|+..... ..+.. ....+.. ..++++++|||++|
T Consensus 81 ~d~~~~~~~~~~~~-~~~~~---~~~~p~ivv~NK~Dl~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (168)
T cd01887 81 VAADDGVMPQTIEA-IKLAK---AANVPFIVALNKIDKPNANP----ERVKN-ELSELGLQGEDEWGGDVQIVPTSAKTG 151 (168)
T ss_pred EECCCCccHHHHHH-HHHHH---HcCCCEEEEEEceecccccH----HHHHH-HHHHhhccccccccCcCcEEEeecccC
Confidence 99998543322221 11222 24589999999999864310 00111 1111110 12357999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy8073 546 DNILDALIALSRHVY 560 (593)
Q Consensus 546 ~gi~~l~~~L~~~l~ 560 (593)
.|+.+++.+|.+...
T Consensus 152 ~gi~~l~~~l~~~~~ 166 (168)
T cd01887 152 EGIDDLLEAILLLAE 166 (168)
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999987654
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=2.4e-20 Score=202.57 Aligned_cols=168 Identities=23% Similarity=0.258 Sum_probs=116.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--eeeEEEEEEECCeeEEEEEEecCCc----------hhhhhh-
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--VDFQMKTIRVDERNVALQLWDTAGQ----------ERFRSM- 457 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~~~~~~~~~~~~~~~~~~l~DTaG~----------e~~~~~- 457 (593)
..++|+|+|.||||||||+|+|++..+. .+.+++| .+.....+.+++ ..+.||||||+ +.|..+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence 4589999999999999999999988632 2233333 444455566666 56789999995 344333
Q ss_pred hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 458 TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
...+++.||++|+|||++++.++.++. |+..+. ..++|+|||+||+|+..... ...+.......+.....+++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~---~~~~~~~i~~~l~~~~~~~~ 359 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDR---RYYLEREIDRELAQVPWAPR 359 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhH---HHHHHHHHHHhcccCCCCCE
Confidence 245678999999999999998888764 333333 34689999999999964211 01111111222332234689
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy8073 538 METSSKSGDNILDALIALSRHVYVFIPCVYL 568 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~~ 568 (593)
++|||++|.||+++|..|.+.+........+
T Consensus 360 ~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t 390 (472)
T PRK03003 360 VNISAKTGRAVDKLVPALETALESWDTRIPT 390 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccCCH
Confidence 9999999999999999999877655444433
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.83 E-value=7.4e-20 Score=168.97 Aligned_cols=148 Identities=17% Similarity=0.227 Sum_probs=108.3
Q ss_pred EEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh------hhHhhcc--CCCEE
Q psy8073 397 FAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS------MTKNYFR--RADGV 468 (593)
Q Consensus 397 ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~------~~~~~~~--~ad~v 468 (593)
|+|++|||||||+|++++..+.....++.+.++....+.+++ ..+.||||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764333333334555556666665 6799999999877643 3555664 99999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|+|++++... ..|...+.. .++|+|+|+||+|+.... .+.. ....++..++++++++||++|.|+
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~------~~~~-~~~~~~~~~~~~~~~iSa~~~~~~ 145 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKR------GIKI-DLDKLSELLGVPVVPTSARKGEGI 145 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccc------cchh-hHHHHHHhhCCCeEEEEccCCCCH
Confidence 999999875432 234433332 358999999999996531 1222 234666777889999999999999
Q ss_pred HHHHHHHHHHH
Q psy8073 549 LDALIALSRHV 559 (593)
Q Consensus 549 ~~l~~~L~~~l 559 (593)
.+++.+|.+..
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=8.9e-20 Score=198.10 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=110.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCch--------hhhhhhHhhcc
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE--------RFRSMTKNYFR 463 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e--------~~~~~~~~~~~ 463 (593)
.++|+|+|.||||||||+|+|++..+ ..+..++|+++......+...+..+.||||||.+ .+...+..++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 47999999999999999999998763 3345566665544443332233678999999975 23445667889
Q ss_pred CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCC
Q psy8073 464 RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~ 543 (593)
.||++|+|||++++.++.. ..|...+.. .++|+|+|+||+|+... ..+....+...++. .++|||+
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~---------~~~~~~~~~~g~~~-~~~iSA~ 182 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERG---------EADAAALWSLGLGE-PHPVSAL 182 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCcc---------chhhHHHHhcCCCC-eEEEEcC
Confidence 9999999999999877643 334444432 45899999999998532 01111222223333 4689999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8073 544 SGDNILDALIALSRHVYV 561 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~ 561 (593)
+|.||.+++.+|+..+.+
T Consensus 183 ~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 183 HGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCcHHHHHHHHhhccc
Confidence 999999999999988865
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.82 E-value=1.5e-19 Score=166.45 Aligned_cols=146 Identities=23% Similarity=0.322 Sum_probs=106.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccce--eeEEEEEEECCeeEEEEEEecCCchhhh--------hhhHhh
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV--DFQMKTIRVDERNVALQLWDTAGQERFR--------SMTKNY 461 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~--~~~~~~~~~~~~~~~~~l~DTaG~e~~~--------~~~~~~ 461 (593)
|++|+++|++|+|||||+|++++..+. ...+..++ ++....+.+++ ..+.+|||||...+. .....+
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRA-IVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREA 77 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceE-eccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHH
Confidence 579999999999999999999987532 12223333 33334444444 689999999965442 124456
Q ss_pred ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 462 FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
+..+|++++|+|++++.+......|.. ....|+++|+||+|+..... . .....+.+++++|
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~------~-------~~~~~~~~~~~~S 138 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSE------L-------LSLLAGKPIIAIS 138 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCccc------c-------ccccCCCceEEEE
Confidence 789999999999999888776654432 33589999999999975411 1 2334456799999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRHV 559 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l 559 (593)
|++|.|+++++.+|...+
T Consensus 139 a~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 139 AKTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999988754
No 154
>KOG1673|consensus
Probab=99.82 E-value=6.2e-20 Score=159.67 Aligned_cols=170 Identities=22% Similarity=0.428 Sum_probs=147.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.-.+||.++|++.+|||||+-.++++++...+..+.|+.+..+++.+.+..+.+.|||.+|+++|..+.+-....+-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 34589999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
++||++.+.++..+..|+..........+|| +||+|.|+--.-+.+ ...-.....+.+++..+++.++||+..+.||.
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e-~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPE-LQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHH-HHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 9999999999999999999988887777885 689999974321111 11122345677888899999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy8073 550 DALIALSRHVYV 561 (593)
Q Consensus 550 ~l~~~L~~~l~~ 561 (593)
.+|..+...+..
T Consensus 176 KIFK~vlAklFn 187 (205)
T KOG1673|consen 176 KIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHhC
Confidence 999988887774
No 155
>COG1159 Era GTPase [General function prediction only]
Probab=99.81 E-value=2.6e-19 Score=174.87 Aligned_cols=169 Identities=16% Similarity=0.190 Sum_probs=124.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc--------hhhhhhhHhhc
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ--------ERFRSMTKNYF 462 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~--------e~~~~~~~~~~ 462 (593)
+.--|+|+|.||||||||+|++++.. .+++++.+.+|+......+.....++.|+||||. +.....+...+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~K-isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCc-eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45679999999999999999999987 4677777777777777666556789999999993 23355667788
Q ss_pred cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-CeEEEEc
Q psy8073 463 RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG-AIFMETS 541 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~-~~~~e~S 541 (593)
..+|+++||+|++.+....+ ...++.+.. .+.|+|+++||+|...+. .........+..... ..++++|
T Consensus 84 ~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~------~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPK------TVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred ccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcH------HHHHHHHHHHHhhCCcceEEEee
Confidence 99999999999998554322 223333433 347999999999987641 111122222222333 2589999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccccccCCC
Q psy8073 542 SKSGDNILDALIALSRHVYVFIPCVYLKDL 571 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~~~~~~~~~~~ 571 (593)
|++|.|++.+.+.|...+.+ .+.+|+.+.
T Consensus 154 A~~g~n~~~L~~~i~~~Lpe-g~~~yp~d~ 182 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPE-GPWYYPEDQ 182 (298)
T ss_pred ccccCCHHHHHHHHHHhCCC-CCCcCChhh
Confidence 99999999999999999987 777777665
No 156
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.81 E-value=3.6e-19 Score=183.38 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc-cC-CCCccceeeEEEEEEECCeeEEEEEEecCCchhh----hhhh---Hhhcc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL-NK-LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF----RSMT---KNYFR 463 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~-~~-~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~----~~~~---~~~~~ 463 (593)
..|+|||.||||||||+|+|+..... +. +.+| .......+.+++ ...++||||||+... ..+. ...+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT--~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTT--LVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc--cCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 58999999999999999999976421 11 1223 233333344433 367899999996321 1233 33456
Q ss_pred CCCEEEEEEeCCCh---hcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEE
Q psy8073 464 RADGVMLLYDVTNE---RSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFM 538 (593)
Q Consensus 464 ~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 538 (593)
.+|++|+|||+++. .+++++..|...+..+.. ...|+|||+||+|+.... ......+.++..++..++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-------~~~~~~~~l~~~~~~~vi 307 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-------ELAELLKELKKALGKPVF 307 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH-------HHHHHHHHHHHHcCCcEE
Confidence 79999999999986 677888888888876643 458999999999996531 123345556666677899
Q ss_pred EEcCCCCCCHHHHHHHHHHHH
Q psy8073 539 ETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l 559 (593)
++||+++.||++++.+|.+.+
T Consensus 308 ~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 308 PISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEccCCcCHHHHHHHHHHHh
Confidence 999999999999999998764
No 157
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.81 E-value=1.4e-19 Score=170.20 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=105.7
Q ss_pred EEcCCCCcHHHHHHHHhcCcc--ccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh----hhh---hhHhhccCCCE
Q psy8073 397 FAGDAAVGKSCFIYRFSKEVF--LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER----FRS---MTKNYFRRADG 467 (593)
Q Consensus 397 ivG~~nvGKSSLln~l~~~~~--~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~----~~~---~~~~~~~~ad~ 467 (593)
|+|++|||||||+|+|++..+ .....+| .+.....+.+++ +..+.||||||... ... ....++..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTT--LEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCcee--ecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 589999999999999998864 1122233 223333344441 36789999999632 111 22445788999
Q ss_pred EEEEEeCCCh------hcHHHHHHHHHHHHHHcC-------CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC
Q psy8073 468 VMLLYDVTNE------RSFNSVKNWVEAVEEVTE-------NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG 534 (593)
Q Consensus 468 vi~v~D~~~~------~s~~~~~~~~~~i~~~~~-------~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~ 534 (593)
+++|+|++++ .++.....|...+..... .++|+++|+||+|+..... +............+
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------~~~~~~~~~~~~~~ 151 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE------LEEELVRELALEEG 151 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH------HHHHHHHHHhcCCC
Confidence 9999999988 467777777777765432 3589999999999965311 11111223333445
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 535 AIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 535 ~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
..+++|||++|.|+++++.+|.+.
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHhh
Confidence 679999999999999999998764
No 158
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.81 E-value=9.8e-19 Score=158.61 Aligned_cols=153 Identities=41% Similarity=0.763 Sum_probs=120.5
Q ss_pred EEcCCCCcHHHHHHHHhcCcc-ccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCC
Q psy8073 397 FAGDAAVGKSCFIYRFSKEVF-LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVT 475 (593)
Q Consensus 397 ivG~~nvGKSSLln~l~~~~~-~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~ 475 (593)
|+|++|+|||||+|++++... .....+|. .++.............+.+|||+|+..+......++..+|++|+|||++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998875 45555565 7777777777777789999999999888777788999999999999999
Q ss_pred ChhcHHHHHHHH-HHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHH-HHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q psy8073 476 NERSFNSVKNWV-EAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDRE-VGEKLAQQYGAIFMETSSKSGDNILDALI 553 (593)
Q Consensus 476 ~~~s~~~~~~~~-~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~-~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~ 553 (593)
++.++.....|+ ..+......++|+++|+||+|+..... .... .........+.+++++||+++.|+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 153 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV------VSEEELAEQLAKELGVPYFETSAKTGENVEELFE 153 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc------hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHH
Confidence 999988888772 233334456799999999999875411 1111 13334445567899999999999999999
Q ss_pred HHH
Q psy8073 554 ALS 556 (593)
Q Consensus 554 ~L~ 556 (593)
+|.
T Consensus 154 ~l~ 156 (157)
T cd00882 154 ELA 156 (157)
T ss_pred HHh
Confidence 875
No 159
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=186.94 Aligned_cols=173 Identities=23% Similarity=0.218 Sum_probs=128.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc----------hhh-hhhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ----------ERF-RSMT 458 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~----------e~~-~~~~ 458 (593)
.+.+||+|+|.||||||||+|+|++.+ ..++++.+|++++.....+..++..+.|+||||. |.| ...+
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgee-R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEE-RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCc-eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 367999999999999999999999987 6778888888888888777655578999999993 444 3445
Q ss_pred HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEE
Q psy8073 459 KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFM 538 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 538 (593)
...+..||++++|+|++.+.+.++.+ .+......+.+++||+||+|+..... .....+....-..+..-..++++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~----ia~~i~~~g~~~vIvvNKWDl~~~~~-~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR----IAGLIEEAGRGIVIVVNKWDLVEEDE-ATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH----HHHHHHHcCCCeEEEEEccccCCchh-hHHHHHHHHHHHHhccccCCeEE
Confidence 66788999999999999998877765 33334455689999999999876411 11111111122222222346899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy8073 539 ETSSKSGDNILDALIALSRHVYVFIPCVYL 568 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~~ 568 (593)
++||++|.|+..++..+............+
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~~~~~ri~T 359 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYECATRRIST 359 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHHhccccCH
Confidence 999999999999999988766655554444
No 160
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=2.2e-19 Score=193.76 Aligned_cols=165 Identities=24% Similarity=0.189 Sum_probs=111.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEE--EEEEECCeeEEEEEEecCCchhhh-----------hh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQM--KTIRVDERNVALQLWDTAGQERFR-----------SM 457 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~--~~~~~~~~~~~~~l~DTaG~e~~~-----------~~ 457 (593)
..++|+|+|.+|||||||+|+|++... .......|++... ..+..++ ..+.||||||+.++. ..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 458999999999999999999998752 2233344444443 3344444 578999999964332 12
Q ss_pred hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 458 TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
...+++.||++|+|||++++.+..+.. ++..+. ..++|+|+|+||+|+.... .....+.......+....++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~---~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLIL---EAGKALVIVVNKWDLVKDE--KTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH---HcCCcEEEEEECcccCCCH--HHHHHHHHHHHHhcccCCCCce
Confidence 345789999999999999988877654 322332 3458999999999997210 0111111111122222224789
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhcc
Q psy8073 538 METSSKSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
++|||++|.|+.+++.++.+.......
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~~~~ 348 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYENANR 348 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999887665433
No 161
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.81 E-value=6.9e-19 Score=168.96 Aligned_cols=163 Identities=24% Similarity=0.304 Sum_probs=114.1
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc----------hhhhhh
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ----------ERFRSM 457 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~----------e~~~~~ 457 (593)
.....++|+|+|++|||||||+|+|++..+...+.+++|++.......++ ..+.||||||. +.+..+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 34577899999999999999999999987666777787777665544432 67999999993 445555
Q ss_pred hHhhccCC---CEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC
Q psy8073 458 TKNYFRRA---DGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG 534 (593)
Q Consensus 458 ~~~~~~~a---d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~ 534 (593)
...+++.+ +++++|+|++.+.+..... +...+. ..++|+++|+||+|+..... .......+.......+
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-i~~~l~---~~~~~~iiv~nK~Dl~~~~~----~~~~~~~i~~~l~~~~ 168 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQ-MIEWLK---EYGIPVLIVLTKADKLKKGE----RKKQLKKVRKALKFGD 168 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHH-HHHHHH---HcCCcEEEEEECcccCCHHH----HHHHHHHHHHHHHhcC
Confidence 55666554 6888999988765543321 112222 23589999999999865311 1111222333333335
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 535 AIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 535 ~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
..++++||++|.|+++++..|...+.+
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 689999999999999999999887753
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.81 E-value=6.1e-19 Score=194.94 Aligned_cols=156 Identities=22% Similarity=0.302 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc-------cccCCCC------ccceeeEEEEEEE-----CCeeEEEEEEecCCchhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEV-------FLNKLGS------TLGVDFQMKTIRV-----DERNVALQLWDTAGQERF 454 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~-------~~~~~~~------t~g~~~~~~~~~~-----~~~~~~~~l~DTaG~e~~ 454 (593)
-+|+|+|++++|||||+++|+... +...+.. +.|.++....+.+ ++..+.+.||||||+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 389999999999999999998642 2222222 2367776655544 566689999999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG 534 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~ 534 (593)
...+..+++.||++|+|||++++.+++....|...+. .++|+|+|+||+|+... ........+...++
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~--------~~~~~~~el~~~lg 151 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSA--------DPERVKKEIEEVIG 151 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCcc--------CHHHHHHHHHHHhC
Confidence 8889999999999999999999888887777765442 35899999999998642 11223344555555
Q ss_pred C---eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 535 A---IFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 535 ~---~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
+ .++++||++|.||.+++++|.+.+.
T Consensus 152 ~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 152 LDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred CCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 5 3799999999999999999988764
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=4.6e-19 Score=163.28 Aligned_cols=145 Identities=20% Similarity=0.172 Sum_probs=99.8
Q ss_pred EEEcCCCCcHHHHHHHHhcCccccCCCCccc--eeeEEEEEEECCeeEEEEEEecCCchhhhh--------hhHhhccCC
Q psy8073 396 VFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--VDFQMKTIRVDERNVALQLWDTAGQERFRS--------MTKNYFRRA 465 (593)
Q Consensus 396 ~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~--------~~~~~~~~a 465 (593)
+++|.+|||||||+|+|++.... ......+ .+........++ ..+.+|||||+..+.. .+..+++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 58999999999999999987421 1112222 334444444554 7899999999876432 344567899
Q ss_pred CEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCC
Q psy8073 466 DGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKS 544 (593)
Q Consensus 466 d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~ 544 (593)
|++|+|+|+.++.+..... +...+. ..+.|+++|+||+|+..... . .......+. .++++||++
T Consensus 78 d~ii~v~d~~~~~~~~~~~-~~~~~~---~~~~piiiv~nK~D~~~~~~------~-----~~~~~~~~~~~~~~~Sa~~ 142 (157)
T cd01894 78 DVILFVVDGREGLTPADEE-IAKYLR---KSKKPVILVVNKVDNIKEED------E-----AAEFYSLGFGEPIPISAEH 142 (157)
T ss_pred CEEEEEEeccccCCccHHH-HHHHHH---hcCCCEEEEEECcccCChHH------H-----HHHHHhcCCCCeEEEeccc
Confidence 9999999998766544321 222222 23489999999999975311 1 122233454 689999999
Q ss_pred CCCHHHHHHHHHHH
Q psy8073 545 GDNILDALIALSRH 558 (593)
Q Consensus 545 g~gi~~l~~~L~~~ 558 (593)
|.|+++++.+|.+.
T Consensus 143 ~~gv~~l~~~l~~~ 156 (157)
T cd01894 143 GRGIGDLLDAILEL 156 (157)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999865
No 164
>KOG0070|consensus
Probab=99.80 E-value=2.2e-19 Score=163.00 Aligned_cols=165 Identities=21% Similarity=0.415 Sum_probs=125.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
.....+|+++|--||||||++++|..+++.. +.||+|..+. .+.+.+ +.+++||.+|+++++.+++.||.+.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-tvPTiGfnVE--~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TVPTIGFNVE--TVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCccc-CCCcccccee--EEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 4567899999999999999999998887433 4788775555 444444 8999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
|||+|.+|+.-+..++.-+..+.... ..+.|+++.+||.|+..+.. ...++......-....+..+..|+|.+|.|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---AAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 99999999988877776444443333 36799999999999976521 111222111111112234578999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8073 548 ILDALIALSRHVYV 561 (593)
Q Consensus 548 i~~l~~~L~~~l~~ 561 (593)
+.+.+++|...+..
T Consensus 166 L~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998865
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.80 E-value=4e-19 Score=164.61 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCch----hhhhhhHhhccCCCEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE----RFRSMTKNYFRRADGVM 469 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e----~~~~~~~~~~~~ad~vi 469 (593)
+|+++|.+|||||||+|+|.+... ...+|.++ .+.+. .+|||||.. ++.......+..||++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999876531 11233222 22222 269999962 22222234478999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC--eEEEEcCCCCCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA--IFMETSSKSGDN 547 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~--~~~e~Sa~~g~g 547 (593)
+|||++++.++. ..|+..+ ..+.|+++|+||+|+... .......+....+. ++++|||++|.|
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~~---------~~~~~~~~~~~~~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPDA---------DVAATRKLLLETGFEEPIFELNSHDPQS 134 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCcc---------cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence 999999887663 2344332 235799999999998542 23445566666664 899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8073 548 ILDALIALSRHVYV 561 (593)
Q Consensus 548 i~~l~~~L~~~l~~ 561 (593)
|++++..|.+.+..
T Consensus 135 i~~l~~~l~~~~~~ 148 (158)
T PRK15467 135 VQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHHHHhchh
Confidence 99999999887754
No 166
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=5.3e-19 Score=168.24 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCc--------------cceeeEEEEEEECCeeEEEEEEecCCchhhhhhhH
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGST--------------LGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTK 459 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t--------------~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~ 459 (593)
+|+|+|.+|||||||+|+|++..+......+ .|.+.......+......+.||||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999987644332111 12222222222333347899999999999888888
Q ss_pred hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH-------
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ------- 532 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~------- 532 (593)
.+++.+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+..... .. ............
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~---~~-~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEED---LE-EVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhc---HH-HHHHHHHHHHccccccchh
Confidence 999999999999999987665433 33333332 4589999999999975211 00 111222222222
Q ss_pred -------hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 533 -------YGAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 533 -------~~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
...+++++||++|.|+.+++.+|.+.+
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 356799999999999999999998876
No 167
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=1.5e-18 Score=183.22 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEE--EEECCeeEEEEEEecCCchh----hhhhhHh---hcc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKT--IRVDERNVALQLWDTAGQER----FRSMTKN---YFR 463 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~--~~~~~~~~~~~l~DTaG~e~----~~~~~~~---~~~ 463 (593)
..|+|||.||||||||||+|++.... ....++++..+.. +.+++ ...+.||||||... ...+... .+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 38999999999999999999986521 1222333333332 33331 36799999999532 1223333 356
Q ss_pred CCCEEEEEEeCCCh---hcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEE
Q psy8073 464 RADGVMLLYDVTNE---RSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFM 538 (593)
Q Consensus 464 ~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 538 (593)
.++++|+|+|+++. .++.+...|...+..+.. .++|+|||+||+|+... ......+...++..++
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----------~e~l~~l~~~l~~~i~ 305 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----------EENLEEFKEKLGPKVF 305 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----------HHHHHHHHHHhCCcEE
Confidence 79999999999865 567777888888877654 46899999999998432 2334556666667899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 539 ETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
+|||+++.|+++++.+|.+.+.+.
T Consensus 306 ~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 306 PISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999988763
No 168
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.80 E-value=5e-19 Score=155.65 Aligned_cols=114 Identities=33% Similarity=0.622 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccc--cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFL--NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
||+|+|++|||||||+++|++..+. ..+.++.+.++......+.+....+.+||++|.+.+......++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998765 23344455666666777888877899999999998877666779999999999
Q ss_pred EeCCChhcHHHHHH---HHHHHHHHcCCCCcEEEEEeCCC
Q psy8073 472 YDVTNERSFNSVKN---WVEAVEEVTENSIPIVICANKVD 508 (593)
Q Consensus 472 ~D~~~~~s~~~~~~---~~~~i~~~~~~~~piivV~NK~D 508 (593)
||++++.|+..+.. |+..+..... ++|+|||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 99999999988755 5555555444 499999999998
No 169
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.80 E-value=8.4e-19 Score=168.03 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----cccc-----CCCCccceeeEEEEEE----------ECCeeEEEEEEecCCchh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKE----VFLN-----KLGSTLGVDFQMKTIR----------VDERNVALQLWDTAGQER 453 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~----~~~~-----~~~~t~g~~~~~~~~~----------~~~~~~~~~l~DTaG~e~ 453 (593)
++|+|+|++|||||||+++|+.. .+.. ..+.|.+.++....+. ..+..+.+.||||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 1111 1234444444333332 123357899999999977
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH--
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-- 531 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-- 531 (593)
+..........+|++|+|+|+++.........|. +... .++|+++|+||+|+...... ..........+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~---~~~~~~~~~~l~~~~ 153 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEER---ERKIEKMKKKLQKTL 153 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHH---HHHHHHHHHHHHHHH
Confidence 6444445567899999999999866555443332 1122 24799999999998643110 0011111111111
Q ss_pred ----HhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 532 ----QYGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 532 ----~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
..+.+++++||++|.|+++++..|..++.
T Consensus 154 ~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 154 EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13567999999999999999999988775
No 170
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=9.7e-19 Score=165.65 Aligned_cols=150 Identities=24% Similarity=0.328 Sum_probs=104.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc----------hhhhhhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ----------ERFRSMT 458 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~----------e~~~~~~ 458 (593)
..+.++|+|+|++|||||||+|+|++..+...+++++|.+.....+.+++ .+.||||||. +.|..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 36778999999999999999999999875666777877776655555543 5899999994 3344444
Q ss_pred Hhhcc---CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-
Q psy8073 459 KNYFR---RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG- 534 (593)
Q Consensus 459 ~~~~~---~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~- 534 (593)
..+++ .+|++|+|+|++++.+..... ++..+. ..++|+++|+||+|+..... ........+......+
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~---~~~~pviiv~nK~D~~~~~~----~~~~~~~i~~~l~~~~~ 163 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLR---ERGIPVLIVLTKADKLKKSE----LNKQLKKIKKALKKDAD 163 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCCHHH----HHHHHHHHHHHHhhccC
Confidence 55655 458999999999876665543 223332 24589999999999964311 1111233333344433
Q ss_pred -CeEEEEcCCCCCCHH
Q psy8073 535 -AIFMETSSKSGDNIL 549 (593)
Q Consensus 535 -~~~~e~Sa~~g~gi~ 549 (593)
..+++|||++|.||+
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 479999999999973
No 171
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=3.1e-18 Score=175.12 Aligned_cols=169 Identities=18% Similarity=0.205 Sum_probs=113.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh--------hhhhhHhhc
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER--------FRSMTKNYF 462 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~--------~~~~~~~~~ 462 (593)
+.-.|+|+|+||||||||+|+|++..+. ..++.+.++.......+......+.||||||... +...+...+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 3456999999999999999999988643 3333333443333322322347899999999532 223445677
Q ss_pred cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-CeEEEEc
Q psy8073 463 RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG-AIFMETS 541 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~-~~~~e~S 541 (593)
..+|++++|+|++++.+.. ...++..+. ..+.|+++|+||+|+.... .........+...++ ..++++|
T Consensus 83 ~~~D~il~vvd~~~~~~~~-~~~i~~~l~---~~~~pvilVlNKiDl~~~~------~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPG-DEFILEKLK---KVKTPVILVLNKIDLVKDK------EELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred hcCCEEEEEEeCCCCCChh-HHHHHHHHh---hcCCCEEEEEECCcCCCCH------HHHHHHHHHHHhhCCCCeEEEec
Confidence 8999999999999843321 122222332 3358999999999996321 112234444554444 5789999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccccccCCC
Q psy8073 542 SKSGDNILDALIALSRHVYVFIPCVYLKDL 571 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~~~~~~~~~~~ 571 (593)
|++|.|+++++.+|...+.. .+.+|+.+.
T Consensus 153 A~~~~gv~~L~~~L~~~l~~-~~~~y~~~~ 181 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPE-GPPYYPEDQ 181 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCC-CCCCCCCCC
Confidence 99999999999999998876 455555553
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=3e-18 Score=160.26 Aligned_cols=156 Identities=22% Similarity=0.194 Sum_probs=102.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccC-CCCccceeeEEEEEEECCeeEEEEEEecCCchhh----------h-hhhH
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNK-LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF----------R-SMTK 459 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~-~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~----------~-~~~~ 459 (593)
.++|+++|++|+|||||+|+|++..+... ..+..........+..++ ..+.+|||||.... . ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 47999999999999999999998753211 111111233334444555 56889999995322 1 1123
Q ss_pred hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh----CC
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY----GA 535 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~----~~ 535 (593)
.++..+|++|+|+|++++.+..... ++..+ ...+.|+++|+||+|+..... .........+...+ ++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~~~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~ 150 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLI---LEEGKALVIVVNKWDLVEKDS-----KTMKEFKKEIRRKLPFLDYA 150 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHH---HhcCCCEEEEEeccccCCccH-----HHHHHHHHHHHhhcccccCC
Confidence 4568999999999999988765543 22222 223589999999999965310 01111122233332 36
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 536 IFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 536 ~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
+++++||++|.|+.+++.++.+.
T Consensus 151 ~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 151 PIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ceEEEeccCCCCHHHHHHHHHHh
Confidence 79999999999999999998764
No 173
>COG2262 HflX GTPases [General function prediction only]
Probab=99.78 E-value=6.2e-19 Score=178.78 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=145.8
Q ss_pred ccCCCCCCCCchhhhcCCCCCCCCCCcccccCC---CCCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCcc
Q psy8073 349 SEYDYNKRDYPELRRQHSNKSDSQSTPLLSLSN---SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL 425 (593)
Q Consensus 349 ~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~ 425 (593)
|-..++|.+++.+++.+..++..+...+..... .....+....-+.|++||++|+|||||+|+|++..+.....-+.
T Consensus 146 G~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFA 225 (411)
T COG2262 146 GFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFA 225 (411)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccc
Confidence 334578888888787777777766655544322 22223334556899999999999999999999876554444444
Q ss_pred ceeeEEEEEEECCeeEEEEEEecCC---------chhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCC
Q psy8073 426 GVDFQMKTIRVDERNVALQLWDTAG---------QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN 496 (593)
Q Consensus 426 g~~~~~~~~~~~~~~~~~~l~DTaG---------~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~ 496 (593)
..+...+.+.+.+ +..+.|.||.| .+.|.+ +-.....||++|+|+|+++|.....+......+....-.
T Consensus 226 TLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~ 303 (411)
T COG2262 226 TLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD 303 (411)
T ss_pred cccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC
Confidence 4566666777765 46799999999 456665 444557899999999999998777777777777777666
Q ss_pred CCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 497 SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 497 ~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
.+|+|+|.||+|+..... ....+....+ ..+.+||++|.|++.++..|...+...
T Consensus 304 ~~p~i~v~NKiD~~~~~~----------~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 304 EIPIILVLNKIDLLEDEE----------ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CCCEEEEEecccccCchh----------hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 799999999999865411 1111222222 478899999999999999999988753
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=2.1e-18 Score=186.37 Aligned_cols=164 Identities=23% Similarity=0.223 Sum_probs=112.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCch----------hhh-hhhH
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE----------RFR-SMTK 459 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e----------~~~-~~~~ 459 (593)
..++|+|+|.+|||||||+|+|++.. ....++..|++.......+...+..+.||||||+. .|. ....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEE-RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 46999999999999999999999875 22334455566655444443334678999999953 221 2234
Q ss_pred hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEE
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFME 539 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e 539 (593)
.+++.||++|+|+|++++.+..+.. +...+. ..+.|+|+|+||+|+..... ...+.......+.....+++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~---~~~~~~ivv~NK~Dl~~~~~---~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLAL---EAGRALVIVVNKWDLVDEKT---MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCcEEEEEECccCCCHHH---HHHHHHHHHHhcccccCCCEEE
Confidence 5788999999999999988877654 222232 23589999999999974210 1112222222222223578999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 540 TSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
|||++|.||.+++..+.+.....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988766543
No 175
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=3.1e-18 Score=182.76 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=111.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh----hh---hhhHhhccC
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER----FR---SMTKNYFRR 464 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~----~~---~~~~~~~~~ 464 (593)
...|+|||.||||||||||+|++.... ....+++|.......++.....|+||||||.-. .. .....++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 358999999999999999999976421 223333444333333333337899999999521 11 122345678
Q ss_pred CCEEEEEEeCCCh----hcHHHHHHHHHHHHHHcC-----------CCCcEEEEEeCCCCCCccccccccccCHHHHHHH
Q psy8073 465 ADGVMLLYDVTNE----RSFNSVKNWVEAVEEVTE-----------NSIPIVICANKVDLRADAQAKGVKCIDREVGEKL 529 (593)
Q Consensus 465 ad~vi~v~D~~~~----~s~~~~~~~~~~i~~~~~-----------~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l 529 (593)
||++|+|+|+++. ..+.++..|...+..+.. ...|+|||+||+|+.... .+ .+.....
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~------el-~e~l~~~ 309 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR------EL-AEFVRPE 309 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH------HH-HHHHHHH
Confidence 9999999999853 355566666666655432 358999999999996431 11 1112222
Q ss_pred HHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhcc
Q psy8073 530 AQQYGAIFMETSSKSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 530 ~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
....++++++|||+++.||++++.+|...+.....
T Consensus 310 l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 310 LEARGWPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 23457789999999999999999999998876543
No 176
>KOG0075|consensus
Probab=99.78 E-value=3.3e-19 Score=153.85 Aligned_cols=155 Identities=23% Similarity=0.433 Sum_probs=123.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
....++++|-.++|||||+|....+.+.....||.|.... .+ +.+.+.+.+||.+|+.+|++++..|++.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr--k~--tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE--Ee--ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 3578999999999999999999999989999999775443 33 3445899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC--------CeEEEEc
Q psy8073 471 LYDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG--------AIFMETS 541 (593)
Q Consensus 471 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~--------~~~~e~S 541 (593)
|+|+.++......+. +.+.+....-.++|++|+|||.|+..+-. .. .+....| +..+.+|
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--------~~---~li~rmgL~sitdREvcC~siS 163 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--------KI---ALIERMGLSSITDREVCCFSIS 163 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--------HH---HHHHHhCccccccceEEEEEEE
Confidence 999999877655554 44445544556799999999999977521 11 1222222 3467899
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRHVY 560 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~ 560 (593)
|+...||+-+..||..+-.
T Consensus 164 cke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 164 CKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EcCCccHHHHHHHHHHHhh
Confidence 9999999999999988654
No 177
>KOG1191|consensus
Probab=99.78 E-value=2.8e-19 Score=183.57 Aligned_cols=188 Identities=20% Similarity=0.194 Sum_probs=131.8
Q ss_pred CcccccCCCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 374 TPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
..+...+.........+.+++|+|+|+||||||||+|+|.... ..++++.+|++++.....++-.+++|.|.||||...
T Consensus 250 d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~d-rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 250 DDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSRED-RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred HHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCC-ceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 4555566667777788899999999999999999999999987 678899999999988888877779999999999543
Q ss_pred --------h-hhhhHhhccCCCEEEEEEeC--CChhcHHHHHHHHHHHHHHcC------CCCcEEEEEeCCCCCCccccc
Q psy8073 454 --------F-RSMTKNYFRRADGVMLLYDV--TNERSFNSVKNWVEAVEEVTE------NSIPIVICANKVDLRADAQAK 516 (593)
Q Consensus 454 --------~-~~~~~~~~~~ad~vi~v~D~--~~~~s~~~~~~~~~~i~~~~~------~~~piivV~NK~Dl~~~~~~~ 516 (593)
. ...++..+..||++++|+|+ ++-.+...+...+........ ...|+|+|.||+|+.......
T Consensus 329 ~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~ 408 (531)
T KOG1191|consen 329 ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM 408 (531)
T ss_pred ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc
Confidence 2 34566778899999999999 333333333333333322211 236899999999997652211
Q ss_pred cccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhcc
Q psy8073 517 GVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 517 ~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
.+..+-.. ............++||+++.|+..|..+|...+.....
T Consensus 409 ~~~~~~~~--~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 409 TKIPVVYP--SAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cCCceecc--ccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 11111000 00000011235679999999999999999998875433
No 178
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=4e-18 Score=179.14 Aligned_cols=169 Identities=16% Similarity=0.132 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCe-eEEEEEEecCCchh-------hhhhhHhhccC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER-NVALQLWDTAGQER-------FRSMTKNYFRR 464 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~-~~~~~l~DTaG~e~-------~~~~~~~~~~~ 464 (593)
..|+|||.||||||||+|+|++... .+++.+++|.......+... ...+.|+||||+-. ........+..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 3799999999999999999997652 34444444444444333222 24699999999532 11122345789
Q ss_pred CCEEEEEEeCC---ChhcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC--CeE
Q psy8073 465 ADGVMLLYDVT---NERSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG--AIF 537 (593)
Q Consensus 465 ad~vi~v~D~~---~~~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~--~~~ 537 (593)
+|++|+|+|++ +...+.....|+..+..+.. ...|+|||+||+|+.... .+ ......+....+ ..+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~------el-~~~l~~l~~~~~~~~~V 310 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE------EA-EERAKAIVEALGWEGPV 310 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH------HH-HHHHHHHHHHhCCCCCE
Confidence 99999999998 45567777788888876543 358999999999986431 11 233444444444 368
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhccccccCCC
Q psy8073 538 METSSKSGDNILDALIALSRHVYVFIPCVYLKDL 571 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~~~~~ 571 (593)
+++||+++.||++++.+|...+.+ .+.+|+.+.
T Consensus 311 i~ISA~tg~GIdeLl~~I~~~L~~-~~~~~~~~~ 343 (390)
T PRK12298 311 YLISAASGLGVKELCWDLMTFIEE-NPREEAEEA 343 (390)
T ss_pred EEEECCCCcCHHHHHHHHHHHhhh-CcccCCccc
Confidence 999999999999999999998876 466666554
No 179
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=178.57 Aligned_cols=152 Identities=19% Similarity=0.204 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh-----h----hhhhHhhcc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER-----F----RSMTKNYFR 463 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~-----~----~~~~~~~~~ 463 (593)
+.|+|||.||||||||+|+|++.. .+++..++|+|++.........+..|.++||+|.+. + ...+...+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-eeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 679999999999999999999997 567777777776665554444447799999999542 2 334566788
Q ss_pred CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcC
Q psy8073 464 RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSS 542 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa 542 (593)
.||++|||+|+..+.+-.+-. ....+. ..++|+|+|+||+|-... ......+ -.+|. ..+.+||
T Consensus 83 eADvilfvVD~~~Git~~D~~-ia~~Lr---~~~kpviLvvNK~D~~~~----------e~~~~ef-yslG~g~~~~ISA 147 (444)
T COG1160 83 EADVILFVVDGREGITPADEE-IAKILR---RSKKPVILVVNKIDNLKA----------EELAYEF-YSLGFGEPVPISA 147 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHH-HHHHHH---hcCCCEEEEEEcccCchh----------hhhHHHH-HhcCCCCceEeeh
Confidence 999999999998866654321 112222 334899999999997532 1111112 23343 4788999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy8073 543 KSGDNILDALIALSRHVY 560 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l~ 560 (593)
.+|.|+.+|++++...+.
T Consensus 148 ~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 148 EHGRGIGDLLDAVLELLP 165 (444)
T ss_pred hhccCHHHHHHHHHhhcC
Confidence 999999999999998873
No 180
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.77 E-value=6.7e-18 Score=185.70 Aligned_cols=159 Identities=18% Similarity=0.280 Sum_probs=110.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.++|+|+|++|+|||||+++|.+..+.....+.++.++....+.+++. ..+.||||||++.|..++..++..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 346689999999999999999999987665543333223333344444432 2789999999999998888899999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHH---HHHHhC--CeEEEEcCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEK---LAQQYG--AIFMETSSK 543 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~---l~~~~~--~~~~e~Sa~ 543 (593)
|+|||++++...+....| ......++|+|+|+||+|+..... ..+. ..... ....++ .++++|||+
T Consensus 163 ILVVda~dgv~~qT~e~i----~~~~~~~vPiIVviNKiDl~~~~~----e~v~-~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI----SHAKAANVPIIVAINKIDKPEANP----DRVK-QELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred EEEEECCCCCCHhHHHHH----HHHHHcCCCEEEEEECcccccCCH----HHHH-HHHHHhhhhHHhcCCCceEEEEECC
Confidence 999999876544443322 223334689999999999864210 0011 11111 112232 469999999
Q ss_pred CCCCHHHHHHHHHH
Q psy8073 544 SGDNILDALIALSR 557 (593)
Q Consensus 544 ~g~gi~~l~~~L~~ 557 (593)
+|.|+++++.+|..
T Consensus 234 tGeGI~eLl~~I~~ 247 (587)
T TIGR00487 234 TGDGIDELLDMILL 247 (587)
T ss_pred CCCChHHHHHhhhh
Confidence 99999999999864
No 181
>KOG0096|consensus
Probab=99.77 E-value=6.7e-19 Score=158.89 Aligned_cols=163 Identities=29% Similarity=0.543 Sum_probs=141.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...++++++|+.|.|||+++++.+.+.|...+.+|+|..+....+.-+-+.+.+..|||+|+|.+..+...||-.+.++|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 35789999999999999999999999999999999999998877766665699999999999999988999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
++||++...++.++..|...+...+.. +||+++|||.|...... ....| .+....++.|+++||+++.|..
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~r~~--k~k~v------~~~rkknl~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKARKV--KAKPV------SFHRKKNLQYYEISAKSNYNFE 158 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceecccccc--ccccc------eeeecccceeEEeecccccccc
Confidence 999999999999999999988887765 99999999999865310 01111 1344567889999999999999
Q ss_pred HHHHHHHHHHHh
Q psy8073 550 DALIALSRHVYV 561 (593)
Q Consensus 550 ~l~~~L~~~l~~ 561 (593)
.-|.+|++.+..
T Consensus 159 kPFl~LarKl~G 170 (216)
T KOG0096|consen 159 RPFLWLARKLTG 170 (216)
T ss_pred cchHHHhhhhcC
Confidence 999999999876
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.77 E-value=5.3e-18 Score=163.72 Aligned_cols=116 Identities=17% Similarity=0.395 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEE--CCeeEEEEEEecCCchhhhhhhHhhccCC-CEEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV--DERNVALQLWDTAGQERFRSMTKNYFRRA-DGVML 470 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~--~~~~~~~~l~DTaG~e~~~~~~~~~~~~a-d~vi~ 470 (593)
+|+|+|++|||||||+++|+...+...+.++ ........+ .+.++.+.||||||+.+++..+..+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~---~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI---EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE---eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence 6999999999999999999998765554433 122222222 23457899999999999988888999999 99999
Q ss_pred EEeCCCh-hcHHHHHHHHHHHHH-H--cCCCCcEEEEEeCCCCCCc
Q psy8073 471 LYDVTNE-RSFNSVKNWVEAVEE-V--TENSIPIVICANKVDLRAD 512 (593)
Q Consensus 471 v~D~~~~-~s~~~~~~~~~~i~~-~--~~~~~piivV~NK~Dl~~~ 512 (593)
|||+++. .++..+..|+..+.. . ...++|++||+||+|+...
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9999987 667776665544322 2 2246999999999998754
No 183
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.77 E-value=8.8e-18 Score=187.12 Aligned_cols=163 Identities=18% Similarity=0.266 Sum_probs=114.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCC--CccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLG--STLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~--~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
..+.+.|+|+|++|+|||||+++|....+..... .|.....+...+..++.++.+.||||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4567899999999999999999998876543222 22222233333444445688999999999999999999999999
Q ss_pred EEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHH--HHHHHhC--CeEEEEcC
Q psy8073 467 GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGE--KLAQQYG--AIFMETSS 542 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~--~l~~~~~--~~~~e~Sa 542 (593)
++|+|||++++...+....|. .....++|+|||+||+|+..... ..+...... .++..++ +++++|||
T Consensus 321 iaILVVDA~dGv~~QT~E~I~----~~k~~~iPiIVViNKiDl~~~~~----e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAIN----YIQAANVPIIVAINKIDKANANT----ERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEEECcCCCChhhHHHHH----HHHhcCceEEEEEECCCccccCH----HHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 999999998865544444332 22345689999999999864210 001111000 0122333 68999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy8073 543 KSGDNILDALIALSRHV 559 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l 559 (593)
++|.||++++.+|....
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999988754
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=1e-17 Score=155.38 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=104.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh--------hhhhHhhcc
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF--------RSMTKNYFR 463 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~--------~~~~~~~~~ 463 (593)
..+|+++|++|||||||+|+|++..+..... ...++.......+......+.+|||||.... .......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999886433222 2222222223333334578999999995432 234456688
Q ss_pred CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-CeEEEEcC
Q psy8073 464 RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG-AIFMETSS 542 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~-~~~~e~Sa 542 (593)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.... .........+....+ .+++++|+
T Consensus 82 ~~d~i~~v~d~~~~~~~~~-~~~~~~~~~---~~~~~iiv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGD-EFILELLKK---SKTPVILVLNKIDLVKDK------EDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred hCCEEEEEEECCCccCchH-HHHHHHHHH---hCCCEEEEEEchhccccH------HHHHHHHHHHHhccCCCceEEEEe
Confidence 9999999999998733221 222333332 248999999999996321 122333444444443 57899999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy8073 543 KSGDNILDALIALSRH 558 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~ 558 (593)
+++.|+++++..|.+.
T Consensus 152 ~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 152 LKGENVDELLEEIVKY 167 (168)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999998764
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=5.6e-18 Score=182.83 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=108.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceee--EEEEEEECCeeEEEEEEecCCc--------hhhhhhhHhhcc
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDF--QMKTIRVDERNVALQLWDTAGQ--------ERFRSMTKNYFR 463 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~--~~~~~~~~~~~~~~~l~DTaG~--------e~~~~~~~~~~~ 463 (593)
+|+|+|.||||||||+|+|++.. ...+..++|+++ ....+.+++ ..+.||||||. +.+...+..+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 58999999999999999999876 233444555544 444444555 67999999995 445566777889
Q ss_pred CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcC
Q psy8073 464 RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSS 542 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa 542 (593)
.||++|+|+|++++.+..+. .+...+.. .++|+|+|+||+|+..... . ... ....+. .++++||
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~------~----~~~-~~~lg~~~~~~vSa 142 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDA------V----AAE-FYSLGFGEPIPISA 142 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCcccc------c----HHH-HHhcCCCCeEEEeC
Confidence 99999999999987655432 22223332 3589999999999864310 1 111 234555 6899999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy8073 543 KSGDNILDALIALSRHVYV 561 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l~~ 561 (593)
++|.|+.++++++...+..
T Consensus 143 ~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 143 EHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CcCCChHHHHHHHHHhcCc
Confidence 9999999999999887754
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.76 E-value=4.8e-18 Score=193.00 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=112.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--eeeEEEEEEECCeeEEEEEEecCCch----------hhhhh-
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--VDFQMKTIRVDERNVALQLWDTAGQE----------RFRSM- 457 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~~~~~~~~~~~~~~~~~~l~DTaG~e----------~~~~~- 457 (593)
..++|+|+|.||||||||+|+|++..+ ..+...+| .+.....+.+++ ..+.||||||+. .|..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHH
Confidence 458999999999999999999998863 11222333 444444555666 457899999953 23222
Q ss_pred hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH----h
Q psy8073 458 TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ----Y 533 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~----~ 533 (593)
...+++.||++|+|||++++.++++..-| ..+. ..++|+|+|+||+|+.+... . ......+... .
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~-~~~~---~~~~piIiV~NK~DL~~~~~----~---~~~~~~~~~~l~~~~ 594 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVM-SMAV---DAGRALVLVFNKWDLMDEFR----R---QRLERLWKTEFDRVT 594 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEEchhcCChhH----H---HHHHHHHHHhccCCC
Confidence 34567899999999999999888876533 3332 24589999999999965311 0 0111112211 1
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy8073 534 GAIFMETSSKSGDNILDALIALSRHVYVFIPCVYL 568 (593)
Q Consensus 534 ~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~~ 568 (593)
.+++++|||++|.||.+++..+.+.+.......++
T Consensus 595 ~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T 629 (712)
T PRK09518 595 WARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPT 629 (712)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCh
Confidence 34678999999999999999998887764443333
No 187
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.76 E-value=1.2e-17 Score=184.71 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc---cccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEV---FLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~---~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
+.|+++|++|+|||||+++|++.. +......+++.++....+.+++ +.+.||||||+++|......++.++|++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 469999999999999999999642 2233333444455444555555 78999999999999888888899999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHh----CCeEEEEcCCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQY----GAIFMETSSKS 544 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~----~~~~~e~Sa~~ 544 (593)
+|+|++++...+... ++..+.. .++| +|||+||+|+.+... ..........+...+ ++++++|||++
T Consensus 79 LVVDa~~G~~~qT~e-hl~il~~---lgi~~iIVVlNK~Dlv~~~~----~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 79 LVVDADEGVMTQTGE-HLAVLDL---LGIPHTIVVITKADRVNEEE----IKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred EEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEECCCCCCHHH----HHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 999999853322222 2222222 3477 999999999975311 111223444555444 46899999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy8073 545 GDNILDALIALSRHVYV 561 (593)
Q Consensus 545 g~gi~~l~~~L~~~l~~ 561 (593)
|.||++++.+|...+..
T Consensus 151 G~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 151 GQGIGELKKELKNLLES 167 (581)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 99999999999887765
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.76 E-value=1e-17 Score=188.38 Aligned_cols=160 Identities=18% Similarity=0.283 Sum_probs=112.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.+.|+|+|++|+|||||+++|.+..+.......+..+.....+.+++ ..+.||||||++.|..++..++..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 56778999999999999999999988765433222221222223344444 6799999999999998898899999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHH--HHHHHHHhC--CeEEEEcCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREV--GEKLAQQYG--AIFMETSSKS 544 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~--~~~l~~~~~--~~~~e~Sa~~ 544 (593)
|+|||++++...+....| ......++|+|||+||+|+.... ...+.... ...++..++ +++++|||++
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~----~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGAN----PDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccC----HHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 999999986443333333 33334568999999999996421 01111111 111233344 6799999999
Q ss_pred CCCHHHHHHHHHHH
Q psy8073 545 GDNILDALIALSRH 558 (593)
Q Consensus 545 g~gi~~l~~~L~~~ 558 (593)
|.||++++.+|...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999998763
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=7.2e-18 Score=182.22 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccce--eeEEEEEEECCeeEEEEEEecCCchh--------hhhhhHhhc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV--DFQMKTIRVDERNVALQLWDTAGQER--------FRSMTKNYF 462 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~--~~~~~~~~~~~~~~~~~l~DTaG~e~--------~~~~~~~~~ 462 (593)
++|+|+|.+|||||||+|+|++... ..+..++|+ ++....+.+++ +.+.||||||++. +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 5899999999999999999998763 223334444 44555556666 7899999999876 233456678
Q ss_pred cCCCEEEEEEeCCChhcHHH--HHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEE
Q psy8073 463 RRADGVMLLYDVTNERSFNS--VKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFME 539 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e 539 (593)
..||++|+|+|++++.+..+ +..|+.. .++|+|+|+||+|+... ......+ ..+++ .+++
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----------~~~~~~~-~~lg~~~~~~ 141 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----------EADAYEF-YSLGLGEPYP 141 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----------hhhHHHH-HhcCCCCCEE
Confidence 99999999999998655433 2334332 25899999999997531 1111222 23455 3789
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q psy8073 540 TSSKSGDNILDALIALSRH 558 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~ 558 (593)
+||++|.|+.+++++|...
T Consensus 142 iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 142 ISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EEeeCCCCHHHHHHHHHhh
Confidence 9999999999999999873
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=2e-17 Score=188.00 Aligned_cols=157 Identities=21% Similarity=0.205 Sum_probs=111.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh--------hhhhhHhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER--------FRSMTKNY 461 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~--------~~~~~~~~ 461 (593)
...++|+|+|.||||||||+|+|++.. ...+..++|++...........+..+.||||||.+. +...+..+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~-~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRR-EAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 345789999999999999999999876 345566777776655544433347899999999653 34455677
Q ss_pred ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 462 FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
+..||++|+|||+++.....+ ..|...+. ..++|+|+|+||+|+.... ......+...++. .++||
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr---~~~~pvIlV~NK~D~~~~~---------~~~~~~~~lg~~~-~~~iS 417 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLR---RAGKPVVLAVNKIDDQASE---------YDAAEFWKLGLGE-PYPIS 417 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHH---hcCCCEEEEEECcccccch---------hhHHHHHHcCCCC-eEEEE
Confidence 899999999999987544322 23544443 3468999999999985320 1111222222333 56899
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy8073 542 SKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~ 561 (593)
|++|.||.+++.+|+..+..
T Consensus 418 A~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCCchHHHHHHHHhccc
Confidence 99999999999999988754
No 191
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.75 E-value=1.6e-17 Score=160.51 Aligned_cols=161 Identities=19% Similarity=0.150 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccc-CCCCccceeeEEEEEEE---------------------------C--C----
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLN-KLGSTLGVDFQMKTIRV---------------------------D--E---- 438 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~g~~~~~~~~~~---------------------------~--~---- 438 (593)
++|+|+|+.|+|||||+.++.+..... .....-|.++......+ . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999996541000 00000111111110000 0 1
Q ss_pred eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccc
Q psy8073 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKG 517 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~ 517 (593)
....+.||||||+++|.......+..+|++|+|+|++++. .......| ..+.... ..|+|+|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~~~--~~~iiivvNK~Dl~~~~~--- 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEIMG--LKHIIIVQNKIDLVKEEQ--- 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHHcC--CCcEEEEEEchhccCHHH---
Confidence 1167899999999999877888888999999999999742 11222222 1222221 247999999999965311
Q ss_pred ccccCHHHHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 518 VKCIDREVGEKLAQQY---GAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 518 ~~~v~~~~~~~l~~~~---~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
..........+...+ +++++++||++|.||++++.+|...+.
T Consensus 155 -~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 155 -ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred -HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 001112233333332 567999999999999999999987664
No 192
>KOG1423|consensus
Probab=99.74 E-value=2.6e-17 Score=159.44 Aligned_cols=200 Identities=19% Similarity=0.196 Sum_probs=134.9
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc------hhh------
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ------ERF------ 454 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~------e~~------ 454 (593)
....+...|+|+|.||||||||.|.+++..+.+....+ -+++......+..+..++.|+||||. .+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~-~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKV-HTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccc-cceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 44567899999999999999999999999865544333 35555566666666789999999992 111
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc-------cccccc---CHH
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQA-------KGVKCI---DRE 524 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~-------~~~~~v---~~~ 524 (593)
-+-.+..+..||+|++|+|++++.....- ..+..+..+.. +|-|+|.||.|....... .....+ ..+
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys~--ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYSK--IPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHhc--CCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 11234567899999999999974433221 23345555544 899999999997543110 000001 111
Q ss_pred HHHHHHH---------HhCC----eEEEEcCCCCCCHHHHHHHHHHHHHhhccccccCCCCCCCcccccccccchhhhcC
Q psy8073 525 VGEKLAQ---------QYGA----IFMETSSKSGDNILDALIALSRHVYVFIPCVYLKDLPYTSVLIFIPFQKQISDIFD 591 (593)
Q Consensus 525 ~~~~l~~---------~~~~----~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 591 (593)
...++.. ..|. .+|.+||++|+||+++.++|...... .++.|+.+++...++..+....-...+||
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~-gpW~y~a~i~T~~s~e~l~~e~VReklLd 301 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP-GPWKYPADIVTEESPEFLCSESVREKLLD 301 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC-CCCCCCcccccccCHHHHHHHHHHHHHHh
Confidence 1122211 1122 37899999999999999999998865 88999999887777766666655555554
No 193
>KOG4423|consensus
Probab=99.74 E-value=1.9e-19 Score=161.67 Aligned_cols=175 Identities=33% Similarity=0.545 Sum_probs=146.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCee-EEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN-VALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~-~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
...-+|+.|+|+-+|||||++.+++...|.-.+..|+|++|..+.+..+... +.++|||.+||++|..++.-||+.|++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 3456899999999999999999999999888999999999998888877653 678999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHc----CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVT----ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSS 542 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa 542 (593)
..+|||++...+|+.+..|.+.+.... +..+|+++.+||||...... .-.......+.+..|. ..+++|+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~-----~~~~~~~d~f~kengf~gwtets~ 176 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK-----NEATRQFDNFKKENGFEGWTETSA 176 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh-----hhhHHHHHHHHhccCccceeeecc
Confidence 999999999999999999999876542 35578999999999865311 1113455566777776 5899999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcccccc
Q psy8073 543 KSGDNILDALIALSRHVYVFIPCVYL 568 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l~~~~~~~~~ 568 (593)
|.+.+++++...|+..+.-+....+.
T Consensus 177 Kenkni~Ea~r~lVe~~lvnd~q~~~ 202 (229)
T KOG4423|consen 177 KENKNIPEAQRELVEKILVNDEQPIK 202 (229)
T ss_pred ccccChhHHHHHHHHHHHhhccCCcc
Confidence 99999999999999988876544333
No 194
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.74 E-value=7.4e-18 Score=160.89 Aligned_cols=162 Identities=25% Similarity=0.309 Sum_probs=109.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCC----------------CCccce--eeEEEEEEECCeeEEEEEEecCCch
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKL----------------GSTLGV--DFQMKTIRVDERNVALQLWDTAGQE 452 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~----------------~~t~g~--~~~~~~~~~~~~~~~~~l~DTaG~e 452 (593)
+.++|+|+|+.++|||||+++|+........ ....|. +.....+........+.|+||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999865311000 001122 2222333212445889999999999
Q ss_pred hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH
Q psy8073 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ 532 (593)
Q Consensus 453 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~ 532 (593)
.|.......+..+|++|+|+|+.++........ +......++|+|+|+||+|+... ....+..+....+.+.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~----l~~~~~~~~p~ivvlNK~D~~~~----~~~~~~~~~~~~l~~~ 153 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEH----LKILRELGIPIIVVLNKMDLIEK----ELEEIIEEIKEKLLKE 153 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHH----HHHHHHTT-SEEEEEETCTSSHH----HHHHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeecccccccccccc----cccccccccceEEeeeeccchhh----hHHHHHHHHHHHhccc
Confidence 998878888999999999999998766544332 22333445899999999999732 1112222223234333
Q ss_pred h------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 533 Y------GAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 533 ~------~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
+ .++++++||.+|.|+.++++.|.+.++
T Consensus 154 ~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 154 YGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3 247999999999999999999988764
No 195
>KOG3883|consensus
Probab=99.74 E-value=8.1e-17 Score=140.07 Aligned_cols=166 Identities=22% Similarity=0.361 Sum_probs=134.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCcc--ccCCCCccceeeEEEEEEE-CCeeEEEEEEecCCchhh-hhhhHhhccC
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVF--LNKLGSTLGVDFQMKTIRV-DERNVALQLWDTAGQERF-RSMTKNYFRR 464 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~--~~~~~~t~g~~~~~~~~~~-~~~~~~~~l~DTaG~e~~-~~~~~~~~~~ 464 (593)
..+..||+++|..+||||+++..|+.+.. .....+|+. |.+...+.. +|..-.+.|+||+|...+ ..+-+.|+.-
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 45678999999999999999999876532 223455653 555555543 454567999999997666 7778899999
Q ss_pred CCEEEEEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCC
Q psy8073 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543 (593)
Q Consensus 465 ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~ 543 (593)
+|++++||+..++.||+.+.-+-..|..... ..+||+|++||+|+.++ +.+..+.+..|++.-.+..++++|.
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p------~~vd~d~A~~Wa~rEkvkl~eVta~ 158 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP------REVDMDVAQIWAKREKVKLWEVTAM 158 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc------hhcCHHHHHHHHhhhheeEEEEEec
Confidence 9999999999999999988765556655443 45999999999999754 5688889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8073 544 SGDNILDALIALSRHVYV 561 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~ 561 (593)
+...+-+.|..|+..+..
T Consensus 159 dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 159 DRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred cchhhhhHHHHHHHhccC
Confidence 999999999999887764
No 196
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.74 E-value=5e-17 Score=179.98 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=116.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCc--cc-----cCC------CCccceeeEEEEEEE-----CCeeEEEEEEecCCchh
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEV--FL-----NKL------GSTLGVDFQMKTIRV-----DERNVALQLWDTAGQER 453 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~--~~-----~~~------~~t~g~~~~~~~~~~-----~~~~~~~~l~DTaG~e~ 453 (593)
.-+|+|+|+.++|||||+.+|+... +. ..+ ..+.|.++....+.+ ++..+.+.||||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3589999999999999999997631 11 111 112355555444433 55578999999999999
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
|...+..+++.||++|+|||++++...+....|.... ..++|+|+|+||+|+.... .......+...+
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--------~~~v~~ei~~~l 154 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--------PERVKQEIEDVI 154 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--------HHHHHHHHHHHh
Confidence 9888889999999999999999987777766665433 2358999999999986421 122233444445
Q ss_pred CC---eEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 534 GA---IFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 534 ~~---~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
++ .++++||++|.||.+++++|.+.+..
T Consensus 155 g~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 155 GIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 54 38999999999999999999887753
No 197
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.72 E-value=5.8e-17 Score=177.96 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=106.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccC----CCCccceeeEEEEEE------------ECCeeEEEEEEecCCchhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNK----LGSTLGVDFQMKTIR------------VDERNVALQLWDTAGQERF 454 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~----~~~t~g~~~~~~~~~------------~~~~~~~~~l~DTaG~e~~ 454 (593)
+.+-|+|+|++|+|||||+|+|.+..+... .+.++|.++...... ++.....+.||||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 345799999999999999999998765432 333445444322211 0111123889999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccc-----------cc--
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVK-----------CI-- 521 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~-----------~v-- 521 (593)
..++..+++.||++|+|||+++....+....+ ..+. ..++|+|+|+||+|+...+...... .+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-NILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 99999999999999999999974333332211 1222 2358999999999997532110000 00
Q ss_pred -----CHHHHHHHHH------------Hh--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 522 -----DREVGEKLAQ------------QY--GAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 522 -----~~~~~~~l~~------------~~--~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
.......+.. .+ ..+++++||++|.|+++++.+|....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0000111111 11 25799999999999999999886543
No 198
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=1e-16 Score=181.39 Aligned_cols=153 Identities=20% Similarity=0.282 Sum_probs=118.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh----------hhHhh
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS----------MTKNY 461 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~----------~~~~~ 461 (593)
.++|+++|+||||||||+|+|++... .+++++|+++..+...+...+..+.+|||||+..+.. +...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 47899999999999999999998753 5677889999888887877778999999999766532 12233
Q ss_pred c--cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEE
Q psy8073 462 F--RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFME 539 (593)
Q Consensus 462 ~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e 539 (593)
+ ..+|++|+|+|+++.... ..|...+.. .++|+++|+||+|+... +.+ ....+.+.+.+++++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~------~~i-~id~~~L~~~LG~pVvp 147 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEK------QNI-RIDIDALSARLGCPVIP 147 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhc------cCc-HHHHHHHHHHhCCCEEE
Confidence 3 489999999999875432 223333433 35899999999998642 112 34567788889999999
Q ss_pred EcCCCCCCHHHHHHHHHHHH
Q psy8073 540 TSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~l 559 (593)
+||++|.|+++++..+....
T Consensus 148 iSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 148 LVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEeecCCCHHHHHHHHHHhh
Confidence 99999999999999887765
No 199
>KOG0071|consensus
Probab=99.72 E-value=4.2e-17 Score=139.81 Aligned_cols=157 Identities=21% Similarity=0.395 Sum_probs=123.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
+.++|+.+|-.++||||++..|+.+. +..+.+|+| |.+.++++.+ +.|.+||.+|+...+..++.||.+..++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-Ccccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 47899999999999999999999876 455667754 6666666665 889999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHH-----HHHhCCeEEEEcCCC
Q psy8073 471 LYDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKL-----AQQYGAIFMETSSKS 544 (593)
Q Consensus 471 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l-----~~~~~~~~~e~Sa~~ 544 (593)
|+|..+....+.++. +...|....-.+.|++|.+||.|+.++.. ..++..+ ++.....+.++||.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--------pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--------PQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--------HHHHHHHhccccccCCccEeecccccc
Confidence 999998877777665 33344333345689999999999987632 2222222 222334578999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8073 545 GDNILDALIALSRHVY 560 (593)
Q Consensus 545 g~gi~~l~~~L~~~l~ 560 (593)
|.|+.+-+.||...+.
T Consensus 163 gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNLK 178 (180)
T ss_pred chhHHHHHHHHHhhcc
Confidence 9999999999988664
No 200
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.71 E-value=7.5e-17 Score=178.45 Aligned_cols=144 Identities=23% Similarity=0.323 Sum_probs=104.6
Q ss_pred cCCCCcHHHHHHHHhcCccccCCCCccceeeEEEE--EEECCeeEEEEEEecCCchhhhhh------hHhhc--cCCCEE
Q psy8073 399 GDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKT--IRVDERNVALQLWDTAGQERFRSM------TKNYF--RRADGV 468 (593)
Q Consensus 399 G~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~--~~~~~~~~~~~l~DTaG~e~~~~~------~~~~~--~~ad~v 468 (593)
|+||||||||+|+|++..+ .+++.+|++..... +.+++ ..+.+|||||+..+... ...++ ..+|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence 8999999999999998764 34445555555444 44444 67899999998776432 33343 479999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|+|+++... ++..+......++|+++|+||+|+... +.+. ...+.+++..+++++++||++|.|+
T Consensus 77 I~VvDat~ler------~l~l~~ql~~~~~PiIIVlNK~Dl~~~------~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 77 VNVVDASNLER------NLYLTLQLLELGIPMILALNLVDEAEK------KGIR-IDEEKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred EEEecCCcchh------hHHHHHHHHhcCCCEEEEEehhHHHHh------CCCh-hhHHHHHHHcCCCEEEEECCCCCCH
Confidence 99999987432 222222333346899999999998543 1122 3456788888999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8073 549 LDALIALSRHV 559 (593)
Q Consensus 549 ~~l~~~L~~~l 559 (593)
+++++++.+..
T Consensus 144 ~eL~~~i~~~~ 154 (591)
T TIGR00437 144 ERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 201
>KOG0076|consensus
Probab=99.71 E-value=1.1e-17 Score=148.96 Aligned_cols=169 Identities=24% Similarity=0.424 Sum_probs=122.4
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcC---cc----ccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHh
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKE---VF----LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKN 460 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~---~~----~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~ 460 (593)
.....+.|+|+|.-|+|||||+.++... .+ +....+|+|...- ++.+++ .++.+||.+|++..++++..
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~~--~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVCN--APLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeecc--ceeEEEEcCChHHHHHHHHH
Confidence 3456789999999999999999887443 11 2234566554443 333443 68999999999999999999
Q ss_pred hccCCCEEEEEEeCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEE
Q psy8073 461 YFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFME 539 (593)
Q Consensus 461 ~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e 539 (593)
||..|+++|+|||++++.-|+.... +...+..-...++|+++.+||.|+.+.......+.+... + .......+++.+
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~-e~~~~rd~~~~p 166 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-A-ELIPRRDNPFQP 166 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-h-hhcCCccCcccc
Confidence 9999999999999999888876655 333344444567999999999999765322111111110 0 111122357999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 540 TSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
|||.+|.||.+.+.|++..+.++
T Consensus 167 vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 167 VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhcccHHHHHHHHHHHHhhc
Confidence 99999999999999999998875
No 202
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.71 E-value=3.5e-16 Score=154.09 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh-------hhhHhhccCCC
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR-------SMTKNYFRRAD 466 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~-------~~~~~~~~~ad 466 (593)
+|+|+|+||||||||+|+|++.......-+..+.+.....+.+++ ..+++|||||+.... .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 799999999999999999998752211111111334445555555 789999999964321 22346789999
Q ss_pred EEEEEEeCCChhc-HHHHHHHHH-----------------------------------------HHHHH-----------
Q psy8073 467 GVMLLYDVTNERS-FNSVKNWVE-----------------------------------------AVEEV----------- 493 (593)
Q Consensus 467 ~vi~v~D~~~~~s-~~~~~~~~~-----------------------------------------~i~~~----------- 493 (593)
++++|+|++++.. ...+...+. .+..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987542 222221111 01111
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 494 -----------T--ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 494 -----------~--~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
. ...+|+++|+||+|+... +....++.. ..++++||++|.|+++++..|.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----------~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----------EELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----------HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 1 123699999999998542 333344443 35889999999999999999988664
No 203
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.70 E-value=6.1e-17 Score=157.04 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=97.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc-cc--C---------------------CC-----CccceeeEEEEEEECCeeEEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVF-LN--K---------------------LG-----STLGVDFQMKTIRVDERNVALQ 444 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~-~~--~---------------------~~-----~t~g~~~~~~~~~~~~~~~~~~ 444 (593)
+|+|+|++|+|||||+++|+...- .. . .. ...|+++......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999975421 00 0 00 0134445444445544557899
Q ss_pred EEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHH
Q psy8073 445 LWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDRE 524 (593)
Q Consensus 445 l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~ 524 (593)
||||||+++|......++..||++|+|+|++.+........| ..+.... ..++|+|+||+|+..... .. ......
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~-~~~~~~~--~~~iIvviNK~D~~~~~~-~~-~~~i~~ 155 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHS-YILSLLG--IRHVVVAVNKMDLVDYSE-EV-FEEIVA 155 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHH-HHHHHcC--CCcEEEEEEchhcccCCH-HH-HHHHHH
Confidence 999999998866566778999999999999876533322222 2222221 135788999999864211 00 001122
Q ss_pred HHHHHHHHhC---CeEEEEcCCCCCCHHHH
Q psy8073 525 VGEKLAQQYG---AIFMETSSKSGDNILDA 551 (593)
Q Consensus 525 ~~~~l~~~~~---~~~~e~Sa~~g~gi~~l 551 (593)
....+...++ .++++|||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3444555555 35899999999999744
No 204
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.70 E-value=2.6e-16 Score=146.25 Aligned_cols=152 Identities=22% Similarity=0.338 Sum_probs=104.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc----------hhhhhhhHhhcc
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ----------ERFRSMTKNYFR 463 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~----------e~~~~~~~~~~~ 463 (593)
.|+|+|++|||||||+|.++++.+.....++.+.+.....+..++ .+.+|||||. +.+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997666666777877777666665554 7999999993 233444444554
Q ss_pred ---CCCEEEEEEeCCChhcHH--HHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH--HhCCe
Q psy8073 464 ---RADGVMLLYDVTNERSFN--SVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ--QYGAI 536 (593)
Q Consensus 464 ---~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~--~~~~~ 536 (593)
.++++++|+|.+...+.. .+..|+.. .+.|+++|+||+|+..... ............. ....+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~----~~~~~~~~~~~l~~~~~~~~ 147 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSE----LAKALKEIKKELKLFEIDPP 147 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHH----HHHHHHHHHHHHHhccCCCc
Confidence 457899999998764332 23334332 2489999999999864311 0011111222221 23457
Q ss_pred EEEEcCCCCCCHHHHHHHHHHH
Q psy8073 537 FMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 537 ~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
++++||+++.|+.++++.|.+.
T Consensus 148 ~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 148 IILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred eEEEecCCCCCHHHHHHHHHHh
Confidence 8999999999999999998765
No 205
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=5.4e-16 Score=140.61 Aligned_cols=156 Identities=26% Similarity=0.359 Sum_probs=118.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccc--------cC----CCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFL--------NK----LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS 456 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~--------~~----~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~ 456 (593)
.....||+|+|+-++||||++..++..... .. ..+|+..||-...+ ++ +..+.|+|||||+||..
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--DE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--cC-cceEEEecCCCcHHHHH
Confidence 456789999999999999999999877421 01 11344444443333 22 25689999999999999
Q ss_pred hhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh--C
Q psy8073 457 MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY--G 534 (593)
Q Consensus 457 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~--~ 534 (593)
++.-++++++++|+++|.+.+..+ .....+..+....+ +|++|++||.||.+. .+.+..+.+.+.. +
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a--------~ppe~i~e~l~~~~~~ 152 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA--------LPPEKIREALKLELLS 152 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC--------CCHHHHHHHHHhccCC
Confidence 999999999999999999999998 44555555544433 899999999999876 3444444444443 6
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 535 AIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 535 ~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
.++++++|..+.|+.+.+..|...
T Consensus 153 ~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 153 VPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CceeeeecccchhHHHHHHHHHhh
Confidence 789999999999999999887665
No 206
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=1.4e-16 Score=146.03 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=101.5
Q ss_pred EEcCCCCcHHHHHHHHhcCccccCCCCccce--eeEEEEEEECCeeEEEEEEecCCchhhh-------hhhHhhccCCCE
Q psy8073 397 FAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV--DFQMKTIRVDERNVALQLWDTAGQERFR-------SMTKNYFRRADG 467 (593)
Q Consensus 397 ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~--~~~~~~~~~~~~~~~~~l~DTaG~e~~~-------~~~~~~~~~ad~ 467 (593)
|+|++|+|||||+|++++..+.. .....+. ........... ...+.||||||...+. .....+++.+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 58999999999999999875331 2222222 22333333321 4679999999976542 344567899999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
+++|+|++++.+..... |.... ...+.|+++|+||+|+....... ..............+++++++||++|.|
T Consensus 79 il~v~~~~~~~~~~~~~-~~~~~---~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 79 ILFVVDADLRADEEEEK-LLELL---RERGKPVLLVLNKIDLLPEEEEE---ELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHH---HhcCCeEEEEEEccccCChhhHH---HHHHHHHhhcccccCCceEEEeeeccCC
Confidence 99999999887765543 33222 23458999999999997542110 0000011222333457899999999999
Q ss_pred HHHHHHHHHHH
Q psy8073 548 ILDALIALSRH 558 (593)
Q Consensus 548 i~~l~~~L~~~ 558 (593)
+.+++.+|.+.
T Consensus 152 v~~l~~~l~~~ 162 (163)
T cd00880 152 IDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.68 E-value=2.2e-16 Score=169.81 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=105.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--cc--------------cCC-------------CCccceeeEEEEEEECCee
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--FL--------------NKL-------------GSTLGVDFQMKTIRVDERN 440 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--~~--------------~~~-------------~~t~g~~~~~~~~~~~~~~ 440 (593)
...++|+|+|++|+|||||+++|+... .. +.. ....|++.+.....+...+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 456899999999999999999998431 00 000 0135666666666666667
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCC--hhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccc
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTN--ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGV 518 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~--~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~ 518 (593)
+.+.||||||++.|.......+..||++|+|+|+++ ...... ..++..+.... ..|+++|+||+|+..... ..
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~-~~~~~~~~~~~--~~~iivviNK~Dl~~~~~-~~- 158 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT-REHVFLARTLG--INQLIVAINKMDAVNYDE-KR- 158 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcch-HHHHHHHHHcC--CCeEEEEEEccccccccH-HH-
Confidence 899999999999986656666789999999999997 322222 22222232221 146999999999964210 00
Q ss_pred cccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q psy8073 519 KCIDREVGEKLAQQYG-----AIFMETSSKSGDNILDAL 552 (593)
Q Consensus 519 ~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~~l~ 552 (593)
..........+...++ +++++|||++|.||.++.
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 0112234444554444 469999999999998744
No 208
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=9.1e-16 Score=142.46 Aligned_cols=158 Identities=23% Similarity=0.312 Sum_probs=118.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC----------chhhhhhhH
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG----------QERFRSMTK 459 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG----------~e~~~~~~~ 459 (593)
...+-|+++|.+|||||||||+|++......++.|+|+|....-+.+++. +.|+|.|| .+.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 46789999999999999999999998767789999999999999988873 89999999 455666666
Q ss_pred hhccC---CCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH----
Q psy8073 460 NYFRR---ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ---- 532 (593)
Q Consensus 460 ~~~~~---ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~---- 532 (593)
.|+.. -.++++++|+..+..-.+.. ++......++|++||+||+|...... . ......++..
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~e----m~~~l~~~~i~~~vv~tK~DKi~~~~------~-~k~l~~v~~~l~~~ 167 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDRE----MIEFLLELGIPVIVVLTKADKLKKSE------R-NKQLNKVAEELKKP 167 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHH----HHHHHHHcCCCeEEEEEccccCChhH------H-HHHHHHHHHHhcCC
Confidence 77653 45888999998877654442 33444455699999999999875411 1 1111222222
Q ss_pred hCCe--EEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 533 YGAI--FMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 533 ~~~~--~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
.... ++..|+.++.|++++...|...+..
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2222 7788999999999999999887754
No 209
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.68 E-value=2.2e-16 Score=169.64 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=107.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC--cccc-----------CC----------------CCccceeeEEEEEEECCe
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE--VFLN-----------KL----------------GSTLGVDFQMKTIRVDER 439 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~-----------~~----------------~~t~g~~~~~~~~~~~~~ 439 (593)
....++|+|+|++++|||||+++|+.. .+.. .. ....|++.+.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 345689999999999999999999852 1110 00 012245555555556666
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHH--HHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSV--KNWVEAVEEVTENSIPIVICANKVDLRADAQAKG 517 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~--~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~ 517 (593)
.+.+.||||||+++|......++..+|++|+|||++++.++... ..++.... ... ..|+|||+||+|+..... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~-~~~-~~~iIVviNK~Dl~~~~~-~- 159 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR-TLG-INQLIVAINKMDSVNYDE-E- 159 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH-HcC-CCeEEEEEEChhccCccH-H-
Confidence 68999999999999977677778999999999999988543211 11121222 222 257999999999964211 0
Q ss_pred ccccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q psy8073 518 VKCIDREVGEKLAQQYG-----AIFMETSSKSGDNILDAL 552 (593)
Q Consensus 518 ~~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~~l~ 552 (593)
.......++..+++.++ +++++|||++|.||.+++
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 01122344555666554 579999999999998744
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.67 E-value=1.1e-15 Score=146.22 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=101.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcc-----c--c-------CCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhh
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVF-----L--N-------KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSM 457 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~-----~--~-------~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~ 457 (593)
.++|+|+|++++|||||+++|+.... . . ......|++.......+...+..+.|+||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999986410 0 0 00113455666666666666678999999999999777
Q ss_pred hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHh---
Q psy8073 458 TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQY--- 533 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~--- 533 (593)
....+..+|++|+|+|++.+....... ++..+.. .++| +|+|+||+|+..... .......+...+....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~~~iIvviNK~D~~~~~~---~~~~~~~~i~~~l~~~g~~ 154 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTRE-HLLLARQ---VGVPYIVVFLNKADMVDDEE---LLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCcEEEEEeCCCCCCcHH---HHHHHHHHHHHHHHHhccc
Confidence 778888999999999998765443333 2223332 3466 789999999863211 1111222344444333
Q ss_pred --CCeEEEEcCCCCCCH
Q psy8073 534 --GAIFMETSSKSGDNI 548 (593)
Q Consensus 534 --~~~~~e~Sa~~g~gi 548 (593)
+++++++||++|.|+
T Consensus 155 ~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 155 GDNTPIVRGSALKALEG 171 (195)
T ss_pred ccCCeEEEeeCccccCC
Confidence 367999999999985
No 211
>PRK10218 GTP-binding protein; Provisional
Probab=99.67 E-value=1.7e-15 Score=167.04 Aligned_cols=162 Identities=16% Similarity=0.191 Sum_probs=117.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhc--CccccC------------CCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSK--EVFLNK------------LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS 456 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~--~~~~~~------------~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~ 456 (593)
+--+|+|+|+.++|||||+++|+. +.|... ...+.|.++..+...+...++.+.||||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999986 333222 123567888888888877789999999999999988
Q ss_pred hhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH------
Q psy8073 457 MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA------ 530 (593)
Q Consensus 457 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~------ 530 (593)
.+..+++.+|++|+|||+++....+....|. .+. ..++|+|+|+||+|+..... ..+..+....+.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~-~a~---~~gip~IVviNKiD~~~a~~----~~vl~ei~~l~~~l~~~~ 155 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVTK-KAF---AYGLKPIVVINKVDRPGARP----DWVVDQVFDLFVNLDATD 155 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHHH-HHH---HcCCCEEEEEECcCCCCCch----hHHHHHHHHHHhccCccc
Confidence 8999999999999999998865444333233 222 24589999999999864311 111111111111
Q ss_pred HHhCCeEEEEcCCCCC----------CHHHHHHHHHHHHH
Q psy8073 531 QQYGAIFMETSSKSGD----------NILDALIALSRHVY 560 (593)
Q Consensus 531 ~~~~~~~~e~Sa~~g~----------gi~~l~~~L~~~l~ 560 (593)
....++++++||++|. |+..+++.|...+.
T Consensus 156 ~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 156 EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 1134678999999998 58888888777665
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.65 E-value=1.2e-15 Score=169.31 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc---cccCCCCccceeeEEE--EEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEV---FLNKLGSTLGVDFQMK--TIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~---~~~~~~~t~g~~~~~~--~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
+-|+++|++++|||||+++|++.. +.... .-|.+.... .+...+ +..+.||||||+++|.......+..+|+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~--~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEK--KRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcc--cCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 358999999999999999998642 22111 112332222 222222 3468999999999997777788899999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHhC---CeEEEEcCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG---AIFMETSSK 543 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~---~~~~e~Sa~ 543 (593)
+|+|+|++.+..-++.. .+..+.. .++| +|||+||+|+.+... .. ........+....+ +++++|||+
T Consensus 78 ~lLVVda~eg~~~qT~e-hl~il~~---lgi~~iIVVlNKiDlv~~~~---~~-~v~~ei~~~l~~~~~~~~~ii~VSA~ 149 (614)
T PRK10512 78 ALLVVACDDGVMAQTRE-HLAILQL---TGNPMLTVALTKADRVDEAR---IA-EVRRQVKAVLREYGFAEAKLFVTAAT 149 (614)
T ss_pred EEEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEECCccCCHHH---HH-HHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 99999998754333222 2222322 2355 579999999965311 01 11233444444433 579999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy8073 544 SGDNILDALIALSRHVY 560 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~ 560 (593)
+|.|++++++.|.....
T Consensus 150 tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 150 EGRGIDALREHLLQLPE 166 (614)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 99999999999986543
No 213
>KOG1707|consensus
Probab=99.65 E-value=3.7e-16 Score=163.58 Aligned_cols=176 Identities=19% Similarity=0.306 Sum_probs=130.1
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||||+|+.||||||||.+|+..+|...+.+-+. .......+.-..++..|+||+..+.-.......++.||+|
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 45679999999999999999999999998877766532 2222234444457899999987555555567788999999
Q ss_pred EEEEeCCChhcHHHHHH-HHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC--eEEEEcCC
Q psy8073 469 MLLYDVTNERSFNSVKN-WVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA--IFMETSSK 543 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~-~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~--~~~e~Sa~ 543 (593)
.+||+++++.+.+.+.. |++.|....+ ..+|||+||||+|+...... .+.. ....+...+.. ..++|||+
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----s~e~-~~~pim~~f~EiEtciecSA~ 158 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----SDEV-NTLPIMIAFAEIETCIECSAL 158 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----chhH-HHHHHHHHhHHHHHHHhhhhh
Confidence 99999999999999876 9999998873 56999999999999765221 1111 12222222221 25889999
Q ss_pred CCCCHHHHHHHHHHHHHhhccccccCCC
Q psy8073 544 SGDNILDALIALSRHVYVFIPCVYLKDL 571 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~~~~~~~~~~ 571 (593)
+-.++.++|..--+.+.....++|....
T Consensus 159 ~~~n~~e~fYyaqKaVihPt~PLyda~~ 186 (625)
T KOG1707|consen 159 TLANVSELFYYAQKAVIHPTSPLYDAEE 186 (625)
T ss_pred hhhhhHhhhhhhhheeeccCcccccccc
Confidence 9999999999877777665555555443
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.65 E-value=1.9e-15 Score=166.73 Aligned_cols=163 Identities=20% Similarity=0.292 Sum_probs=103.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccC----CCCccceeeEEEEEEE--CCee-----E-----EEEEEecCCchh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK----LGSTLGVDFQMKTIRV--DERN-----V-----ALQLWDTAGQER 453 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~----~~~t~g~~~~~~~~~~--~~~~-----~-----~~~l~DTaG~e~ 453 (593)
.+.+.|+|+|++|+|||||+++|.+..+... ...++|.++....... .+.. . .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3456899999999999999999987643221 2234444433221100 0110 1 168999999999
Q ss_pred hhhhhHhhccCCCEEEEEEeCCC---hhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccc-----------c
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTN---ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGV-----------K 519 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~-----------~ 519 (593)
|..++...+..+|++|+|||+++ +.++..+. .+. ..++|+++|+||+|+...+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 98888888899999999999998 44444332 222 246899999999998532211000 0
Q ss_pred ccCH-------HHHHHHHH------------H--hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 520 CIDR-------EVGEKLAQ------------Q--YGAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 520 ~v~~-------~~~~~l~~------------~--~~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
.+.. +....+.. . -..+++++||++|.|+++++..+....
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0000 00011110 0 125689999999999999998876543
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.65 E-value=1.4e-15 Score=168.00 Aligned_cols=160 Identities=20% Similarity=0.264 Sum_probs=115.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC--ccccCC------------CCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhH
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKE--VFLNKL------------GSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTK 459 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~--~~~~~~------------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~ 459 (593)
+|+|+|+.++|||||+++|+.. .+.... ....|.++..+...+...++.+.||||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 222211 12346677766666666679999999999999988889
Q ss_pred hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH------HHh
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA------QQY 533 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~------~~~ 533 (593)
.+++.+|++|+|+|+++... .....|+..+.. .++|+|||+||+|+..... ..+..+....+. ...
T Consensus 83 ~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~----~~v~~ei~~l~~~~g~~~e~l 154 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE---LGLKPIVVINKIDRPSARP----DEVVDEVFDLFAELGADDEQL 154 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH---CCCCEEEEEECCCCCCcCH----HHHHHHHHHHHHhhccccccc
Confidence 99999999999999987543 333455555543 3589999999999864311 112222222221 123
Q ss_pred CCeEEEEcCCCCC----------CHHHHHHHHHHHHHh
Q psy8073 534 GAIFMETSSKSGD----------NILDALIALSRHVYV 561 (593)
Q Consensus 534 ~~~~~e~Sa~~g~----------gi~~l~~~L~~~l~~ 561 (593)
.++++++||++|. |+..+++.|...+..
T Consensus 155 ~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 155 DFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 4679999999996 799999998887753
No 216
>KOG0074|consensus
Probab=99.64 E-value=1.4e-15 Score=130.70 Aligned_cols=157 Identities=29% Similarity=0.448 Sum_probs=122.5
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
+.++.+||.++|-.|+|||||+..|.+.. +....+|-| |..+.+..++ .+.+.+||.+|+...+..+..||.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 34788999999999999999999998877 455667755 6666776665 5789999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC--------CeEE
Q psy8073 468 VMLLYDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG--------AIFM 538 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~--------~~~~ 538 (593)
+|+|+|.+|..-|+.+.. +...+...+...+|+++.+||.|+..+.. .+ .++...+ ..+-
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--------~e---eia~klnl~~lrdRswhIq 157 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--------VE---EIALKLNLAGLRDRSWHIQ 157 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--------hH---HHHHhcchhhhhhceEEee
Confidence 999999999988887765 44455555566799999999999865421 11 1222221 2367
Q ss_pred EEcCCCCCCHHHHHHHHHHHH
Q psy8073 539 ETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l 559 (593)
+|||.++.|+..-..++...+
T Consensus 158 ~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 158 ECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred eCccccccCccCcchhhhcCC
Confidence 899999999988888876543
No 217
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.63 E-value=1.5e-15 Score=147.94 Aligned_cols=113 Identities=21% Similarity=0.350 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccC-----------C------CCccceeeEEEEEEE-----CCeeEEEEEEecCCc
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNK-----------L------GSTLGVDFQMKTIRV-----DERNVALQLWDTAGQ 451 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~-----------~------~~t~g~~~~~~~~~~-----~~~~~~~~l~DTaG~ 451 (593)
+|+|+|++|+|||||+++|+....... + ....|.++....+.+ ++..+.+.||||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987532211 0 011233333333322 355688999999999
Q ss_pred hhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 452 e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
..|...+..++..+|++|+|||+++..++.. ..|+..+. ..++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~---~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI---LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECcccC
Confidence 9998888889999999999999998776643 33443332 2348999999999985
No 218
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.2e-15 Score=160.95 Aligned_cols=157 Identities=18% Similarity=0.270 Sum_probs=119.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh------hhhhHhhc--c
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF------RSMTKNYF--R 463 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~------~~~~~~~~--~ 463 (593)
.++|+++|+||||||||+|+|++.. ..++..+|+|+..++..+...+..++++|.||.=.+ ...++.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4679999999999999999999876 457889999999999888777788999999993111 22344444 4
Q ss_pred CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCC
Q psy8073 464 RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~ 543 (593)
++|++|.|+|+++-+- + +....+...-++|+|++.|++|.... .-..-+.+++.+..|++++++||+
T Consensus 81 ~~D~ivnVvDAtnLeR--n----LyltlQLlE~g~p~ilaLNm~D~A~~-------~Gi~ID~~~L~~~LGvPVv~tvA~ 147 (653)
T COG0370 81 KPDLIVNVVDATNLER--N----LYLTLQLLELGIPMILALNMIDEAKK-------RGIRIDIEKLSKLLGVPVVPTVAK 147 (653)
T ss_pred CCCEEEEEcccchHHH--H----HHHHHHHHHcCCCeEEEeccHhhHHh-------cCCcccHHHHHHHhCCCEEEEEee
Confidence 6799999999997532 1 11222333446899999999998643 122334567888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q psy8073 544 SGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~~ 563 (593)
+|.|+++++..+.+......
T Consensus 148 ~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 148 RGEGLEELKRAIIELAESKT 167 (653)
T ss_pred cCCCHHHHHHHHHHhccccc
Confidence 99999999999987665543
No 219
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.63 E-value=3e-15 Score=147.71 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=83.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc-c---c--CCC----------CccceeeEEEEEEECCeeEEEEEEecCCchhhhhh
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVF-L---N--KLG----------STLGVDFQMKTIRVDERNVALQLWDTAGQERFRSM 457 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~-~---~--~~~----------~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~ 457 (593)
+|+|+|++|+|||||+++|+...- . + ..+ ...|.++......+...++.+.||||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999976410 0 0 000 12233444444555555688999999999999888
Q ss_pred hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 458 TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
+..+++.+|++|+|+|+++..... ...|+..+.. .++|+++|+||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH---cCCCEEEEEECccccC
Confidence 889999999999999999876543 3445444443 3589999999999874
No 220
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.62 E-value=3.4e-15 Score=159.16 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=104.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCcccc-----CCCCccceeeEE----------------EEEEECC------eeEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLN-----KLGSTLGVDFQM----------------KTIRVDE------RNVAL 443 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~-----~~~~t~g~~~~~----------------~~~~~~~------~~~~~ 443 (593)
..++|+++|++++|||||+++|.+..... ..+.|+...+.. ....+++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 56899999999999999999997532100 001111111100 0000111 13679
Q ss_pred EEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccC
Q psy8073 444 QLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCID 522 (593)
Q Consensus 444 ~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~ 522 (593)
.||||||+++|...+...+..+|++|+|+|++++. ..+. ...+..+.... ..|+|+|+||+|+..... ....
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~----~~~~ 155 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEIIG--IKNIVIVQNKIDLVSKEK----ALEN 155 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHcC--CCeEEEEEEccccCCHHH----HHHH
Confidence 99999999999777788888999999999999754 2222 22222332222 247999999999975311 0011
Q ss_pred HHHHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 523 REVGEKLAQQY---GAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 523 ~~~~~~l~~~~---~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
......+...+ +++++++||++|.|+++++++|...+.
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22233333332 568999999999999999999987653
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.61 E-value=2.6e-15 Score=146.77 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc--cc--------------cC-------------CCCccceeeEEEEEEECCeeEEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEV--FL--------------NK-------------LGSTLGVDFQMKTIRVDERNVALQ 444 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~--~~--------------~~-------------~~~t~g~~~~~~~~~~~~~~~~~~ 444 (593)
+|+|+|++++|||||+.+|+... .. +. .....|++.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999996421 00 00 001234555555555555568999
Q ss_pred EEecCCchhhhhhhHhhccCCCEEEEEEeCCChh-------cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcc-ccc
Q psy8073 445 LWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER-------SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADA-QAK 516 (593)
Q Consensus 445 l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~-------s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~-~~~ 516 (593)
||||||+..|.......+..+|++|+|+|++++. ..+....|. ..... ...|+|+|+||+|+.... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 9999999888776777788999999999999842 122222232 22222 126899999999997320 000
Q ss_pred cccccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHH
Q psy8073 517 GVKCIDREVGEKLAQQYG-----AIFMETSSKSGDNIL 549 (593)
Q Consensus 517 ~~~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~ 549 (593)
....+ ...+..+...++ +++++|||++|.||.
T Consensus 158 ~~~~i-~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEI-KKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHH-HHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 00111 112222333332 569999999999986
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.61 E-value=7.8e-15 Score=155.87 Aligned_cols=165 Identities=13% Similarity=0.175 Sum_probs=110.6
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcC-------ccc--cC-----CCCccceeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKE-------VFL--NK-----LGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~-------~~~--~~-----~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
...+.++|+++|++++|||||+++|++. .+. .. .....|++.......+......+.|+||||+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4466799999999999999999999862 100 00 011345566655555655557889999999999
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEE-EEEeCCCCCCccccccccccCHHHHHHHHHH
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV-ICANKVDLRADAQAKGVKCIDREVGEKLAQQ 532 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-vV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~ 532 (593)
|.......+..+|++|+|+|+......+.. .++..+. ..++|.| +|+||+|+.... ........+...+...
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~---~~gi~~iivvvNK~Dl~~~~---~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLAR---QVGVPYIVVFLNKCDMVDDE---ELLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHH---HcCCCeEEEEEEecCCcchH---HHHHHHHHHHHHHHHH
Confidence 976667778899999999999875443332 2222232 3347865 579999996421 1111223344555555
Q ss_pred hC-----CeEEEEcCCCCC----------CHHHHHHHHHHHH
Q psy8073 533 YG-----AIFMETSSKSGD----------NILDALIALSRHV 559 (593)
Q Consensus 533 ~~-----~~~~e~Sa~~g~----------gi~~l~~~L~~~l 559 (593)
++ ++++++||++|. ++..++++|...+
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 161 YDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 43 579999999984 6777777776654
No 223
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.60 E-value=2.2e-14 Score=140.94 Aligned_cols=183 Identities=16% Similarity=0.115 Sum_probs=121.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCch-hh------hhhhHhhccC
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE-RF------RSMTKNYFRR 464 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e-~~------~~~~~~~~~~ 464 (593)
..+|++||.|+||||||+|+|++.......-++.+.+..+..+.++| ..+||.|+||+- .. .....+.++.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 36899999999999999999998742222222211333444445555 899999999942 11 1234567899
Q ss_pred CCEEEEEEeCCChhc-HHHHH--------------------------------------------HHHHHHHHH------
Q psy8073 465 ADGVMLLYDVTNERS-FNSVK--------------------------------------------NWVEAVEEV------ 493 (593)
Q Consensus 465 ad~vi~v~D~~~~~s-~~~~~--------------------------------------------~~~~~i~~~------ 493 (593)
||+||+|+|+....+ .+.+. ..+.....+
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986443 22111 111111000
Q ss_pred ---------------cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 494 ---------------TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 494 ---------------~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
...-+|.|+|.||+|+.. .+....+.+.. .++.+||+.|.|++++.+.|.+.
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~ 287 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----------LEELERLARKP--NSVPISAKKGINLDELKERIWDV 287 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHh
Confidence 011369999999999864 23444455444 57889999999999999999998
Q ss_pred HHhhccccccCC-CCCCCcccccccccchhhh
Q psy8073 559 VYVFIPCVYLKD-LPYTSVLIFIPFQKQISDI 589 (593)
Q Consensus 559 l~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~ 589 (593)
+.-..-...++. .|....++++..++++.|+
T Consensus 288 L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dv 319 (365)
T COG1163 288 LGLIRVYTKPPGEEPDFDEPLILRRGSTVGDV 319 (365)
T ss_pred hCeEEEEecCCCCCCCCCCCeEEeCCCcHHHH
Confidence 874333222222 3777789999999888775
No 224
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.59 E-value=1.6e-14 Score=141.20 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCC-------------------C----ccceeeEEEE-------------EEEC
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLG-------------------S----TLGVDFQMKT-------------IRVD 437 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~-------------------~----t~g~~~~~~~-------------~~~~ 437 (593)
||+++|+.++|||||+++|+.+.|....+ + .+|.+...+. -.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999765432111 0 1122211000 0011
Q ss_pred CeeEEEEEEecCCchhhhhhhHhhcc--CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc
Q psy8073 438 ERNVALQLWDTAGQERFRSMTKNYFR--RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQA 515 (593)
Q Consensus 438 ~~~~~~~l~DTaG~e~~~~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~ 515 (593)
..+..+.|+||||+++|.......+. .+|++++|+|+..+..-.+. .++..+. ..++|+++|+||+|+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~-~~l~~l~---~~~ip~ivvvNK~D~~~~~~- 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK-EHLGLAL---ALNIPVFVVVTKIDLAPANI- 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH-HHHHHHH---HcCCCEEEEEECccccCHHH-
Confidence 12367899999999999554444443 79999999999876554332 2333333 34589999999999864311
Q ss_pred ccccccCHHHHHHHHH--------------------------HhCCeEEEEcCCCCCCHHHHHHHHH
Q psy8073 516 KGVKCIDREVGEKLAQ--------------------------QYGAIFMETSSKSGDNILDALIALS 556 (593)
Q Consensus 516 ~~~~~v~~~~~~~l~~--------------------------~~~~~~~e~Sa~~g~gi~~l~~~L~ 556 (593)
..... .....+.. ...++++.+||.+|.|++++...|.
T Consensus 156 --~~~~~-~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 --LQETL-KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred --HHHHH-HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 00011 11111111 1123789999999999999887764
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.59 E-value=1.4e-14 Score=153.76 Aligned_cols=165 Identities=15% Similarity=0.183 Sum_probs=110.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccc---------c-----CCCCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFL---------N-----KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~---------~-----~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
..+.++|+++|++++|||||+++|++.... . ......|++.......+......+.||||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 455689999999999999999999863100 0 00013456666666666555678899999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
.......+..+|++|+|+|++.+...+... ++..+.. .++| +|+|+||+|+.+... .......+...+...+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~---~g~~~~IvviNK~D~~~~~~---~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQ---VGVPYLVVFLNKVDLVDDEE---LLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH---cCCCEEEEEEEecCCcchHH---HHHHHHHHHHHHHHHh
Confidence 766667778999999999998764444333 2223332 2477 678999999864211 1111122344444444
Q ss_pred C-----CeEEEEcCCCCC--------CHHHHHHHHHHHHH
Q psy8073 534 G-----AIFMETSSKSGD--------NILDALIALSRHVY 560 (593)
Q Consensus 534 ~-----~~~~e~Sa~~g~--------gi~~l~~~L~~~l~ 560 (593)
+ ++++++||++|. ++..+++.|...+.
T Consensus 162 ~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 162 DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 3 579999999983 56777777666543
No 226
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.58 E-value=1.6e-14 Score=153.95 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=103.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccC------CCCccceeeEEEE----------------EEEC--C----ee
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK------LGSTLGVDFQMKT----------------IRVD--E----RN 440 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~------~~~t~g~~~~~~~----------------~~~~--~----~~ 440 (593)
..+.++|+++|+.++|||||+.+|.+.. ... .+.|+...+.... ..++ + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4566999999999999999999996531 111 1122111110000 0011 0 12
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccc
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVK 519 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~ 519 (593)
..+.||||||++.|..........+|++|+|+|++++. ..+....|. .+.... ..|+++|+||+|+.+... .
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-~l~~~~--i~~iiVVlNK~Dl~~~~~----~ 157 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-ALDIIG--IKNIVIVQNKIDLVSKER----A 157 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-HHHHcC--CCcEEEEEEeeccccchh----H
Confidence 57899999999999766666667889999999999754 223222222 222221 147999999999965311 0
Q ss_pred ccCHHHHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 520 CIDREVGEKLAQQY---GAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 520 ~v~~~~~~~l~~~~---~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
.........+...+ +.+++++||++|.|+++++.+|...+.
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 01112333333322 467999999999999999999987664
No 227
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.58 E-value=3e-14 Score=142.91 Aligned_cols=116 Identities=17% Similarity=0.276 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc-cccCC---------CCc----------cceeeEEEEEEECCeeEEEEEEecCCch
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEV-FLNKL---------GST----------LGVDFQMKTIRVDERNVALQLWDTAGQE 452 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~-~~~~~---------~~t----------~g~~~~~~~~~~~~~~~~~~l~DTaG~e 452 (593)
-+|+|+|++|+|||||+++|+... ..... +.| -|.++......+...++.+.||||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 379999999999999999997531 00100 111 1334444455566666899999999999
Q ss_pred hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 453 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
+|......+++.+|++|+|+|+++...... ..|+.... ..++|+++|+||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHH---hcCCCEEEEEECCccCCC
Confidence 998778888999999999999987654332 33333332 245899999999998643
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.58 E-value=2e-14 Score=138.21 Aligned_cols=166 Identities=15% Similarity=0.163 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccce---eeEEEEEEECCeeEEEEEEecCCchhhhh-----hhHhhccC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV---DFQMKTIRVDERNVALQLWDTAGQERFRS-----MTKNYFRR 464 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~---~~~~~~~~~~~~~~~~~l~DTaG~e~~~~-----~~~~~~~~ 464 (593)
++|+|+|++|||||||+|+|++..+......+.|. +.....+.... ...+.+|||||...... +....+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 78999999999999999999986543322222221 11111111111 23689999999643211 12233678
Q ss_pred CCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc-ccc-----cccCHHHHHHHHH---HhC-
Q psy8073 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQA-KGV-----KCIDREVGEKLAQ---QYG- 534 (593)
Q Consensus 465 ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~-~~~-----~~v~~~~~~~l~~---~~~- 534 (593)
+|++|+|.+. +.+ ..-..|+..+... +.|+++|+||+|+...... ... ..+.......+.. ..+
T Consensus 81 ~d~~l~v~~~--~~~-~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISST--RFS-SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeCC--CCC-HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 9999998543 222 2223466666554 4799999999998532110 000 0111111111221 212
Q ss_pred --CeEEEEcCC--CCCCHHHHHHHHHHHHHhhccc
Q psy8073 535 --AIFMETSSK--SGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 535 --~~~~e~Sa~--~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
.++|.+|+. .+.|+..+.+.|...+.+....
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 358899999 6799999999999998875443
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.57 E-value=2.2e-14 Score=152.50 Aligned_cols=151 Identities=13% Similarity=0.174 Sum_probs=100.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCcc-----cc----C-----CCCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVF-----LN----K-----LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~-----~~----~-----~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
..+.++|+++|++++|||||+++|++... .. . .....|++.....+.+...+..+.||||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 35568999999999999999999974310 00 0 0012455666666666666678999999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEE-EEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV-ICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-vV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
.......+..+|++|+|+|++.+...+.... +..+. ..++|.+ +|+||+|+.+... .......+...+...+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~-l~~~~---~~gi~~iIvvvNK~Dl~~~~~---~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREH-ILLAR---QVGVPYIVVFLNKCDMVDDEE---LLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHH-HHHHH---HcCCCEEEEEEEecccCCHHH---HHHHHHHHHHHHHHhc
Confidence 6656666778999999999988544443332 22232 2246755 6899999975311 1111223455555555
Q ss_pred C-----CeEEEEcCCCCC
Q psy8073 534 G-----AIFMETSSKSGD 546 (593)
Q Consensus 534 ~-----~~~~e~Sa~~g~ 546 (593)
+ ++++++||.+|.
T Consensus 162 ~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCCccCccEEECcccccc
Confidence 4 689999999885
No 230
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.56 E-value=3.6e-14 Score=126.28 Aligned_cols=135 Identities=24% Similarity=0.314 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC----chhhhhhhHhhccCCCEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG----QERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG----~e~~~~~~~~~~~~ad~vi 469 (593)
||+|+|+.+||||||+++|.+... .+..|..+.| . =.++|||| ...|..-......+||+|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------Y-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------c-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 899999999999999999988763 2333321211 1 13489999 3344444455567999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCCCCCH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKSGDNI 548 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~gi 548 (593)
+|.|++++.+.-. +.+... -+.|+|-|+||+|+... ....+..+++.+..|+ .+|++|+.+|+||
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-------~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-------DANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-------hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 9999998754211 112222 24799999999999722 1223445566666776 4799999999999
Q ss_pred HHHHHHHH
Q psy8073 549 LDALIALS 556 (593)
Q Consensus 549 ~~l~~~L~ 556 (593)
++|...|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99998874
No 231
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=1e-13 Score=136.88 Aligned_cols=157 Identities=19% Similarity=0.235 Sum_probs=100.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc-----hhhhhh---hHhhc
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ-----ERFRSM---TKNYF 462 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~-----e~~~~~---~~~~~ 462 (593)
..+.|+|+|+||||||||++++++...--..-|+.+....... +..+...+|++||||. +..+.+ +...+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGh--fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGH--FERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEee--eecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 5579999999999999999999987522112222112233333 3333478999999993 111111 11122
Q ss_pred -cCCCEEEEEEeCCCh--hcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHH-HHHHhCCeEE
Q psy8073 463 -RRADGVMLLYDVTNE--RSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEK-LAQQYGAIFM 538 (593)
Q Consensus 463 -~~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~-l~~~~~~~~~ 538 (593)
.-+++|||+||.+.. -+.+....++..|..... .|+++|.||+|..+... .+.... +...-+....
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~--------~~~~~~~~~~~~~~~~~ 314 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEK--------LEEIEASVLEEGGEEPL 314 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhH--------HHHHHHHHHhhcccccc
Confidence 247899999999754 455666667777877665 79999999999875421 111221 2222223356
Q ss_pred EEcCCCCCCHHHHHHHHHHHH
Q psy8073 539 ETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l 559 (593)
.+++..+.+++.+...+....
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 315 KISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred ceeeeehhhHHHHHHHHHHHh
Confidence 788999999998887776653
No 232
>KOG1489|consensus
Probab=99.56 E-value=3.6e-14 Score=138.72 Aligned_cols=153 Identities=19% Similarity=0.296 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEE--EEECCeeEEEEEEecCCchhh----hhh---hHhhcc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKT--IRVDERNVALQLWDTAGQERF----RSM---TKNYFR 463 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~--~~~~~~~~~~~l~DTaG~e~~----~~~---~~~~~~ 463 (593)
..|.+||-||+|||||+|++..... .+.....+|..+.. +.+++. ..+.+-|.||+-.- +.+ ....+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHH
Confidence 4788999999999999999987642 22222223333333 333332 23999999994211 122 223457
Q ss_pred CCCEEEEEEeCCCh---hcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe-E
Q psy8073 464 RADGVMLLYDVTNE---RSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-F 537 (593)
Q Consensus 464 ~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~-~ 537 (593)
.|+++++|+|++.+ ..++.+..++.++..+.. .+.|.+||+||+|+.+. ....+..+++...-+ +
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---------e~~~l~~L~~~lq~~~V 344 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---------EKNLLSSLAKRLQNPHV 344 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---------HHHHHHHHHHHcCCCcE
Confidence 89999999999988 777777777777766653 56899999999999543 123346677776654 8
Q ss_pred EEEcCCCCCCHHHHHHHHHH
Q psy8073 538 METSSKSGDNILDALIALSR 557 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~ 557 (593)
+++||++++|+.+++..|..
T Consensus 345 ~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 345 VPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EEeeeccccchHHHHHHHhh
Confidence 99999999999999998765
No 233
>CHL00071 tufA elongation factor Tu
Probab=99.56 E-value=5.4e-14 Score=150.09 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=102.1
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccc--c----C--------CCCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFL--N----K--------LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~--~----~--------~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
....++|+++|++|+|||||+++|++.... . . .....|++.......+...+..+.|+||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 355689999999999999999999864210 0 0 0011456666555556555678899999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
.......+..+|++|+|+|+..+..-+... ++..+. ..++| +|+|+||+|+.+... ........+..+....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~---~~g~~~iIvvvNK~D~~~~~~---~~~~~~~~l~~~l~~~ 161 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAK---QVGVPNIVVFLNKEDQVDDEE---LLELVELEVRELLSKY 161 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHH---HcCCCEEEEEEEccCCCCHHH---HHHHHHHHHHHHHHHh
Confidence 776777788999999999998765433333 222232 23478 778999999975311 1111223344444443
Q ss_pred C-----CeEEEEcCCCCCC
Q psy8073 534 G-----AIFMETSSKSGDN 547 (593)
Q Consensus 534 ~-----~~~~e~Sa~~g~g 547 (593)
+ ++++++||.+|.|
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 162 DFPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCCcceEEEcchhhccc
Confidence 3 5799999999964
No 234
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.55 E-value=1.1e-13 Score=134.73 Aligned_cols=113 Identities=18% Similarity=0.290 Sum_probs=79.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc--cccCC-CCc-----------cceeeE--EEEEEEC--------CeeEEEEEEecC
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEV--FLNKL-GST-----------LGVDFQ--MKTIRVD--------ERNVALQLWDTA 449 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~--~~~~~-~~t-----------~g~~~~--~~~~~~~--------~~~~~~~l~DTa 449 (593)
+|+|+|+.++|||||+.+|+... +.... +.+ -|.+.. ...+.+. +..+.+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999997542 11100 000 111111 1122222 346889999999
Q ss_pred CchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 450 G~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
|++.|......+++.||++|+|||++.+.+.+....|. .....++|+|+|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~----~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR----QALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH----HHHHcCCCEEEEEECCCcc
Confidence 99999888999999999999999999887765543332 2223458999999999985
No 235
>KOG0072|consensus
Probab=99.55 E-value=7.8e-15 Score=126.56 Aligned_cols=163 Identities=20% Similarity=0.322 Sum_probs=116.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
...+|.++|--|+|||+++-++--+++ ....||+|. .+.++.. .+.++++||..|+-..+..++.||.+.|.+|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigf--nve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGF--NVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCc--Ccccccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 678999999999999999988866552 334456554 3444444 45899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHH-HHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|+|.+|......... ++.++..-......++|++||.|..... ....+....+..-.+..-..++.+||.+|.|++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~---t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL---TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh---hHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 999998765443333 4444544444457789999999986431 111111111111112222568999999999999
Q ss_pred HHHHHHHHHHHh
Q psy8073 550 DALIALSRHVYV 561 (593)
Q Consensus 550 ~l~~~L~~~l~~ 561 (593)
..++||.+-+..
T Consensus 169 ~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 169 PAMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 236
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.54 E-value=1.2e-13 Score=141.19 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=54.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccc------CCCCccceeeEEEE---------------EEECC-eeEEEEEEecCCc-
Q psy8073 395 IVFAGDAAVGKSCFIYRFSKEVFLN------KLGSTLGVDFQMKT---------------IRVDE-RNVALQLWDTAGQ- 451 (593)
Q Consensus 395 I~ivG~~nvGKSSLln~l~~~~~~~------~~~~t~g~~~~~~~---------------~~~~~-~~~~~~l~DTaG~- 451 (593)
|+|+|.||||||||+|+|++..+.. ...+++|..+.... ..+++ ..++++||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 6899999999999999999875321 11223333222110 00122 3478999999996
Q ss_pred ---hhhhhhhHh---hccCCCEEEEEEeCC
Q psy8073 452 ---ERFRSMTKN---YFRRADGVMLLYDVT 475 (593)
Q Consensus 452 ---e~~~~~~~~---~~~~ad~vi~v~D~~ 475 (593)
+.+..+... .++.||++|+|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 445554444 589999999999997
No 237
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=1.4e-13 Score=132.17 Aligned_cols=174 Identities=13% Similarity=0.090 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--eeeEEEEEEECCeeEEEEEEecCCchhh--------hhh---hH
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--VDFQMKTIRVDERNVALQLWDTAGQERF--------RSM---TK 459 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~~~~~~~~~~~~~~~~~~l~DTaG~e~~--------~~~---~~ 459 (593)
++|+|+|.+|||||||+|++++...........| .++......+++ ..+.++||||.... ..+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 4799999999999999999998853322211112 333344444555 67999999994322 111 12
Q ss_pred hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCC--CCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN--SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
....++|++|+|+++.. .+..+ ...+..+....+. -.++|+|.|++|............-.....+.+....+..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23468899999999987 33322 2233344443321 14789999999965431111000011234555566666555
Q ss_pred EEEc-----CCCCCCHHHHHHHHHHHHHhhccccccCC
Q psy8073 538 METS-----SKSGDNILDALIALSRHVYVFIPCVYLKD 570 (593)
Q Consensus 538 ~e~S-----a~~g~gi~~l~~~L~~~l~~~~~~~~~~~ 570 (593)
+..+ +..+.++.+|+..|...+..+.+.+|..+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~ 194 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTND 194 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 4444 45678899999999999998777666554
No 238
>KOG0030|consensus
Probab=99.53 E-value=1.9e-14 Score=123.37 Aligned_cols=137 Identities=12% Similarity=0.251 Sum_probs=107.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHH--HHHHHhCCC--CCCcccHHHHHHHHHHHhhhhhhhhccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHD--GDGKVSLEDFAYGFREFLNSDARRLKSN 78 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~--~i~~~~D~d--~~G~i~~~eF~~~~~~~~~~~~~~~~~~ 78 (593)
-++++++|..||+.+||.|+..++.++||.+|.+|++.+ ..+...+.+ .--+|+|++|+.++..+...... ...
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q--~t~ 87 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ--GTY 87 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc--CcH
Confidence 368999999999999999999999999999999999776 777777766 33689999999999887433211 111
Q ss_pred cc-CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 79 VN-AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
.. .......+.++.+..+.+.++++|+++|+.. +.++|..|.+.- .+.++..+||.||+++++
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl-------~eeEVe~Llag~----eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL-------TEEEVEELLAGQ----EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc-------cHHHHHHHHccc----cccCCcCcHHHHHHHHhc
Confidence 11 1122234455566677788999999999998 999999999866 456899999999999874
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.52 E-value=8.7e-14 Score=150.54 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=100.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--ccc-----------CCCCc------------------cceeeEEEEEEECC
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--FLN-----------KLGST------------------LGVDFQMKTIRVDE 438 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--~~~-----------~~~~t------------------~g~~~~~~~~~~~~ 438 (593)
...++|+|+|++++|||||+++|+... +.. ..+.+ -|.+.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 556999999999999999999997542 110 01111 13334444444445
Q ss_pred eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccc
Q psy8073 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGV 518 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~ 518 (593)
....+.||||||++.|.......+..+|++|+|+|++.+..-+....|. .+.... -.|+|||+||+|+..... ...
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg--~~~iIvvvNKiD~~~~~~-~~~ 180 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLLG--IKHLVVAVNKMDLVDYSE-EVF 180 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHhC--CCceEEEEEeeccccchh-HHH
Confidence 5578999999999999655555679999999999998764333322222 222222 147899999999864210 000
Q ss_pred cccCHHHHHHHHHHh----CCeEEEEcCCCCCCHHHHH
Q psy8073 519 KCIDREVGEKLAQQY----GAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 519 ~~v~~~~~~~l~~~~----~~~~~e~Sa~~g~gi~~l~ 552 (593)
. -.......+.... .++++++||++|.|+..+.
T Consensus 181 ~-~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 181 E-RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred H-HHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 0 0111222233333 3679999999999998754
No 240
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.51 E-value=1.6e-13 Score=137.91 Aligned_cols=114 Identities=17% Similarity=0.256 Sum_probs=80.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc--cc--cCC------------CCccceeeEEEEEEECCeeEEEEEEecCCchhhhhh
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEV--FL--NKL------------GSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSM 457 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~--~~--~~~------------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~ 457 (593)
+|+|+|++|+|||||+++|+... .. +.+ ....|++.......+...++.+.||||||+..|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997421 00 000 012244444444444444588999999999999878
Q ss_pred hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 458 TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
+..+++.+|++|+|+|+++...-.....| ..+. ..++|+|+|+||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~-~~~~---~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVW-RQAD---RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCCCC
Confidence 88999999999999999886544433322 2232 34589999999999864
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.51 E-value=2.3e-13 Score=148.56 Aligned_cols=118 Identities=17% Similarity=0.276 Sum_probs=83.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--cc--ccCC-----CC-----------ccceeeEEEEEEECCeeEEEEEEecC
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--VF--LNKL-----GS-----------TLGVDFQMKTIRVDERNVALQLWDTA 449 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--~~--~~~~-----~~-----------t~g~~~~~~~~~~~~~~~~~~l~DTa 449 (593)
.+..+|+|+|++|+|||||+++|+.. .. .+.+ .. .-|.++......+...++.+.|||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 34569999999999999999999631 10 0000 00 11334444444555556889999999
Q ss_pred CchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 450 G~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
|+..|......+++.+|++|+|+|+++..... ...++... ...++|+|+|+||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~---~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVC---RLRDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHH---HhcCCCEEEEEECCcccc
Confidence 99999887888899999999999998865433 23333332 234689999999999864
No 242
>PLN03126 Elongation factor Tu; Provisional
Probab=99.51 E-value=2.7e-13 Score=146.09 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=102.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCc------ccc--------CCCCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEV------FLN--------KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~------~~~--------~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
....++|+++|++++|||||+++|+... +.. ......|.+.......+...+..+.||||||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4567899999999999999999998521 000 01122455555555555555578999999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
.......+..+|++|+|+|+......+... ++..+.. .++| +|+|+||+|+.+... ...........+...+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e-~~~~~~~---~gi~~iIvvvNK~Dl~~~~~---~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEE---LLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEecccccCHHH---HHHHHHHHHHHHHHhc
Confidence 776777788999999999999775544433 3333332 3477 778999999965211 1111222344444443
Q ss_pred -----CCeEEEEcCCCCCC
Q psy8073 534 -----GAIFMETSSKSGDN 547 (593)
Q Consensus 534 -----~~~~~e~Sa~~g~g 547 (593)
+++++++||.+|.+
T Consensus 231 g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 231 EFPGDDIPIISGSALLALE 249 (478)
T ss_pred CCCcCcceEEEEEcccccc
Confidence 46799999998853
No 243
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.50 E-value=1.9e-13 Score=137.89 Aligned_cols=152 Identities=19% Similarity=0.279 Sum_probs=98.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccc----cC--CCCcc----------ceeeEEEEEEECCeeEEEEEEecCCchhhhhh
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFL----NK--LGSTL----------GVDFQMKTIRVDERNVALQLWDTAGQERFRSM 457 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~----~~--~~~t~----------g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~ 457 (593)
+|+|+|++|+|||||+++|+..... +. .+.|+ +.+.......+...++.+.||||||+..|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999753210 00 11110 11222222233333478999999999988777
Q ss_pred hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 458 TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
+..+++.+|++|+|+|+++.........|. .+. ..++|+++|+||+|+... ........+...++..+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~---~~~~p~iivvNK~D~~~~--------~~~~~~~~l~~~~~~~~ 148 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD---EAGIPRIIFINKMDRERA--------DFDKTLAALQEAFGRPV 148 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEECCccCCC--------CHHHHHHHHHHHhCCCe
Confidence 888999999999999999876655444443 222 345899999999998643 12233445555555543
Q ss_pred --EEEcCCCCCCHHHHHHHHHH
Q psy8073 538 --METSSKSGDNILDALIALSR 557 (593)
Q Consensus 538 --~e~Sa~~g~gi~~l~~~L~~ 557 (593)
+.+...+|.|+..+++.+..
T Consensus 149 ~~~~ip~~~~~~~~~~vd~~~~ 170 (268)
T cd04170 149 VPLQLPIGEGDDFKGVVDLLTE 170 (268)
T ss_pred EEEEecccCCCceeEEEEcccC
Confidence 44556777776655555433
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.50 E-value=1.1e-13 Score=147.35 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc--ccc-----------CCCC------------------ccceeeEEEEEEECCeeE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEV--FLN-----------KLGS------------------TLGVDFQMKTIRVDERNV 441 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~--~~~-----------~~~~------------------t~g~~~~~~~~~~~~~~~ 441 (593)
++|+|+|++++|||||+++|+... ... ..+. .-|.+.+.....+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 489999999999999999996431 000 0111 123334444444544557
Q ss_pred EEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccccc
Q psy8073 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCI 521 (593)
Q Consensus 442 ~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v 521 (593)
.+.||||||+++|.......+..+|++|+|+|+..+...+....|. .+.... ..++|+|+||+|+..... .... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~~--~~~iivviNK~D~~~~~~-~~~~-~ 155 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLLG--IRHVVLAVNKMDLVDYDE-EVFE-N 155 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHcC--CCcEEEEEEecccccchH-HHHH-H
Confidence 8999999999999665666788999999999998765444333332 222222 246899999999864211 0000 0
Q ss_pred CHHHHHHHHHHhC---CeEEEEcCCCCCCHHH
Q psy8073 522 DREVGEKLAQQYG---AIFMETSSKSGDNILD 550 (593)
Q Consensus 522 ~~~~~~~l~~~~~---~~~~e~Sa~~g~gi~~ 550 (593)
.......+...++ ++++++||++|.|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1122233334333 4699999999999986
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=99.50 E-value=3.7e-13 Score=142.93 Aligned_cols=165 Identities=13% Similarity=0.174 Sum_probs=108.4
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccc---c-----------CCCCccceeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFL---N-----------KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~---~-----------~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
.....++|+++|++++|||||+++|++.... . ......|.+.......+...+..+.|+||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3456799999999999999999999873100 0 0011345666666666655557889999999999
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEE-EEEeCCCCCCccccccccccCHHHHHHHHHH
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV-ICANKVDLRADAQAKGVKCIDREVGEKLAQQ 532 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-vV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~ 532 (593)
|.......+..||++++|+|+..+...+... ++..+.. .++|++ +|+||+|+..... ...........+...
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~-~~~~~~~---~g~p~iiVvvNK~D~~~~~~---~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ---VGVPYIVVFLNKCDMVDDEE---LLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHHH-HHHHHHH---cCCCEEEEEEeecCCcchHH---HHHHHHHHHHHHHHh
Confidence 9766777789999999999998765443322 3333332 347876 5899999964211 001112223333333
Q ss_pred h-----CCeEEEEcCCCCC----------CHHHHHHHHHHHH
Q psy8073 533 Y-----GAIFMETSSKSGD----------NILDALIALSRHV 559 (593)
Q Consensus 533 ~-----~~~~~e~Sa~~g~----------gi~~l~~~L~~~l 559 (593)
+ +++++++||++|. |+..++++|...+
T Consensus 161 ~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 161 YDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred cCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 3 3579999999975 4666776666543
No 246
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.49 E-value=1.8e-13 Score=119.75 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=68.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceee--EEEEEEECCeeEEEEEEecCCchh---------hhhhhHhhc
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDF--QMKTIRVDERNVALQLWDTAGQER---------FRSMTKNYF 462 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~--~~~~~~~~~~~~~~~l~DTaG~e~---------~~~~~~~~~ 462 (593)
+|+|+|.+|||||||+|+|++... ...+...+++. ....+.+++ ..+.|+||||... ........+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 699999999999999999998531 12222222322 334455666 5568999999421 111233445
Q ss_pred cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeC
Q psy8073 463 RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK 506 (593)
..+|++|+|+|++++.. .....++..+ . .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l---~-~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILREL---K-NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHH---H-TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHH---h-cCCCEEEEEcC
Confidence 89999999999887432 2223333334 2 55899999998
No 247
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=7.5e-13 Score=139.09 Aligned_cols=163 Identities=19% Similarity=0.291 Sum_probs=111.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECC-eeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDE-RNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~-~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
.+.+-|+|+|+..-|||||+..+-+..+...-.--+..-.....+.++. ..-.+.|+|||||+.|..++..-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3557899999999999999999976644322111111112222233321 224689999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHH--HHHHHhC--CeEEEEcCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGE--KLAQQYG--AIFMETSSKS 544 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~--~l~~~~~--~~~~e~Sa~~ 544 (593)
|+|+|+++..-.+.+. .|......++|+||++||+|...... ..+..+..+ -.+..|+ ..++++||++
T Consensus 83 ILVVa~dDGv~pQTiE----AI~hak~a~vP~iVAiNKiDk~~~np----~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 83 ILVVAADDGVMPQTIE----AINHAKAAGVPIVVAINKIDKPEANP----DKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEEEccCCcchhHHH----HHHHHHHCCCCEEEEEecccCCCCCH----HHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 9999999876555554 56666677899999999999975411 101111100 0122333 4699999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8073 545 GDNILDALIALSRHVY 560 (593)
Q Consensus 545 g~gi~~l~~~L~~~l~ 560 (593)
|.|+++|+..|.-.-.
T Consensus 155 g~Gi~eLL~~ill~ae 170 (509)
T COG0532 155 GEGIDELLELILLLAE 170 (509)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999997665443
No 248
>PRK13351 elongation factor G; Reviewed
Probab=99.47 E-value=4.5e-13 Score=152.45 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=85.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcc----ccCC--CC----------ccceeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVF----LNKL--GS----------TLGVDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~----~~~~--~~----------t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
....+|+|+|+.|+|||||+++|+...- .+.+ +. ..|.+.......+...++.+.||||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567999999999999999999975310 0000 00 112222222223333458899999999999
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
|...+..+++.+|++|+|+|++++........|.. +. ..++|+++|+||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~---~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-AD---RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HH---hcCCCEEEEEECCCCCCC
Confidence 98888999999999999999999877766554532 22 335899999999998753
No 249
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=1.8e-13 Score=132.14 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=110.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEE-EEEECCeeEEEEEEecCCchh-------hhhhhHhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMK-TIRVDERNVALQLWDTAGQER-------FRSMTKNY 461 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~-~~~~~~~~~~~~l~DTaG~e~-------~~~~~~~~ 461 (593)
...++|+|+|.+|||||||||+|+.+........-+|++.... ...+++ -.+.||||||.+. ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 4568999999999999999999997653332211122222211 122344 5689999999554 56667788
Q ss_pred ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcc---cc------ccccccCHHHHHHHHHH
Q psy8073 462 FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADA---QA------KGVKCIDREVGEKLAQQ 532 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~---~~------~~~~~v~~~~~~~l~~~ 532 (593)
+..+|+++++.++.++.---+...|.+.+.... +.|+++|+|.+|..... .. ...+.........+.+.
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~--~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGL--DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhcc--CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999998764444444555554333 37999999999975431 11 11122222223333332
Q ss_pred hC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 533 YG--AIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 533 ~~--~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
+. .++|.+|+..+.|++.+..+|+..+.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 22 36888999999999999999988776
No 250
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.47 E-value=3.4e-13 Score=136.02 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=93.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccC----------CCCccceeeEEEEEEECCeeEEEEEEecCCchhhh------
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNK----------LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR------ 455 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~----------~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~------ 455 (593)
.++|+|+|.+|+|||||+|+|++..+... ..+|.+.+.....+..+|..+.+.||||||...+.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 47999999999999999999999865433 34454455555666667777899999999932110
Q ss_pred --------------------hhhHhhcc--CCCEEEEEEeCCC-hhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 456 --------------------SMTKNYFR--RADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 456 --------------------~~~~~~~~--~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
..+...+. .+|+++++++.+. .....+ +..+..+.. .+|+|+|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D----~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD----IEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH----HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 01112333 4778888888764 222222 223444443 5899999999998653
Q ss_pred cccccccccCHHHHHHHHHHhCCeEEEEcCC
Q psy8073 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543 (593)
Q Consensus 513 ~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~ 543 (593)
.. ...........+..+++.+|.....
T Consensus 159 ~e----~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 159 EE----LKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HH----HHHHHHHHHHHHHHcCCceECCCCC
Confidence 11 1123445666677888888876653
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.47 E-value=3.8e-13 Score=151.42 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=98.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCcc--c-c----------CCCCc------------------cceeeEEEEEEEC
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVF--L-N----------KLGST------------------LGVDFQMKTIRVD 437 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~--~-~----------~~~~t------------------~g~~~~~~~~~~~ 437 (593)
....++|+|+|++|+|||||+++|+...- . . ..++| -|.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34558999999999999999999986421 0 0 11111 1333333333444
Q ss_pred CeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccc
Q psy8073 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKG 517 (593)
Q Consensus 438 ~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~ 517 (593)
..+..+.|+||||++.|.......+..+|++|+|+|++.+...+....|. .+.... ..|+|||+||+|+..... ..
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~~--~~~iivvvNK~D~~~~~~-~~ 176 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLLG--IRHVVLAVNKMDLVDYDQ-EV 176 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHhC--CCeEEEEEEecccccchh-HH
Confidence 44567899999999998655666788999999999998765433322221 222222 257899999999964210 00
Q ss_pred ccccCHHHHHHHHHHhC---CeEEEEcCCCCCCHHH
Q psy8073 518 VKCIDREVGEKLAQQYG---AIFMETSSKSGDNILD 550 (593)
Q Consensus 518 ~~~v~~~~~~~l~~~~~---~~~~e~Sa~~g~gi~~ 550 (593)
...+ ......+...++ ++++++||++|.|+.+
T Consensus 177 ~~~i-~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEI-VADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHH-HHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0011 122223333444 3589999999999874
No 252
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.47 E-value=2.9e-13 Score=145.29 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=102.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--ccc------------------------C---CCCccceeeEEEEEEECCee
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--FLN------------------------K---LGSTLGVDFQMKTIRVDERN 440 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--~~~------------------------~---~~~t~g~~~~~~~~~~~~~~ 440 (593)
.+.++|+++|+.++|||||+-+|+... ... + ....-|.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 456899999999999999999886421 000 0 00012445555555566667
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHH-------HHHHHHHHHHHHcCCCC-cEEEEEeCCCCCCc
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFN-------SVKNWVEAVEEVTENSI-PIVICANKVDLRAD 512 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~-------~~~~~~~~i~~~~~~~~-piivV~NK~Dl~~~ 512 (593)
..+.|+||||+++|.......+..||++|+|+|+++.. |+ ..+..+..+. ..++ ++|||+||+|+...
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCCch
Confidence 88999999999999888888899999999999998732 21 2222222222 2346 47889999998621
Q ss_pred -cccccccccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHHH
Q psy8073 513 -AQAKGVKCIDREVGEKLAQQYG-----AIFMETSSKSGDNILD 550 (593)
Q Consensus 513 -~~~~~~~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~~ 550 (593)
+....... ..+++..+....+ ++|+++||.+|.||.+
T Consensus 161 ~~~~~~~~~-i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDE-IVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHH-HHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 10000111 1234555566555 5799999999999854
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=99.46 E-value=9.2e-13 Score=141.29 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=105.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC------cccc---C-----CCCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE------VFLN---K-----LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~------~~~~---~-----~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
....++|+++|++++|||||+++|++. .... . .....|++.......+...+..+.|+||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456689999999999999999999732 1000 0 0112456666666666666678999999999998
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
.......+..+|++|+|+|++.+...++.. . +......++| +|+|+||+|+..... ...........+...+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt~e-~---l~~~~~~gip~iIvviNKiDlv~~~~---~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQTKE-H---ILLARQVGVPSLVVFLNKVDVVDDEE---LLELVEMELRELLSFY 210 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHH-H---HHHHHHcCCCeEEEEEEeeccCCHHH---HHHHHHHHHHHHHHHh
Confidence 665656667899999999998765433322 2 2222234578 578899999974211 1111112223333322
Q ss_pred -----CCeEEEEcCC---CCCC-------HHHHHHHHHHHHH
Q psy8073 534 -----GAIFMETSSK---SGDN-------ILDALIALSRHVY 560 (593)
Q Consensus 534 -----~~~~~e~Sa~---~g~g-------i~~l~~~L~~~l~ 560 (593)
.++++++||. +|.| +..++++|...+.
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3578888886 4544 6677777766543
No 254
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.46 E-value=1.7e-12 Score=136.83 Aligned_cols=83 Identities=24% Similarity=0.363 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccc-CC-C----CccceeeEEEEE---------------EEC-CeeEEEEEEecCC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLN-KL-G----STLGVDFQMKTI---------------RVD-ERNVALQLWDTAG 450 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~-~~-~----~t~g~~~~~~~~---------------~~~-~~~~~~~l~DTaG 450 (593)
++|+|+|.||||||||+|+|++..+.. .+ . ++.|+-+....+ ..+ ...++++||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876432 12 1 222221111000 011 1236799999999
Q ss_pred c----hhhhhhhHhh---ccCCCEEEEEEeCC
Q psy8073 451 Q----ERFRSMTKNY---FRRADGVMLLYDVT 475 (593)
Q Consensus 451 ~----e~~~~~~~~~---~~~ad~vi~v~D~~ 475 (593)
. .....+...+ ++.||++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333444444 89999999999997
No 255
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.46 E-value=1.5e-12 Score=142.27 Aligned_cols=118 Identities=17% Similarity=0.262 Sum_probs=84.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC-ccccC---C----------------CCccceeeEEEEEEECCeeEEEEEEecC
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE-VFLNK---L----------------GSTLGVDFQMKTIRVDERNVALQLWDTA 449 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~-~~~~~---~----------------~~t~g~~~~~~~~~~~~~~~~~~l~DTa 449 (593)
.+..+|+|+|++|+|||||+++|+.. ..... + ....|.++......++..++.+.|||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45679999999999999999998532 11100 0 0112445555555666667899999999
Q ss_pred CchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 450 G~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
|+..|......+++.+|++|+|+|+++..... ...|+.... ..++|+|+|+||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~---~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTR---LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHH---hcCCCEEEEEECccccC
Confidence 99999877888899999999999998753322 233443332 24589999999999853
No 256
>KOG1145|consensus
Probab=99.45 E-value=5.1e-13 Score=138.85 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=114.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCC--CccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLG--STLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~--~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
.++.+-|.|+|+..-|||||+.+|-+..+...-. -|-...-+..++. +| -.++|.||||+..|..|+.....-+|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence 3467889999999999999999997765433211 1222222333333 34 67999999999999999999999999
Q ss_pred EEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHH--HHHHhC--CeEEEEcC
Q psy8073 467 GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEK--LAQQYG--AIFMETSS 542 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~--l~~~~~--~~~~e~Sa 542 (593)
+|++|+.+.|..-.+.+. .|......++|+||.+||||....... .+..+.... ....+| +.++++||
T Consensus 227 IvVLVVAadDGVmpQT~E----aIkhAk~A~VpiVvAinKiDkp~a~pe----kv~~eL~~~gi~~E~~GGdVQvipiSA 298 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQTLE----AIKHAKSANVPIVVAINKIDKPGANPE----KVKRELLSQGIVVEDLGGDVQVIPISA 298 (683)
T ss_pred EEEEEEEccCCccHhHHH----HHHHHHhcCCCEEEEEeccCCCCCCHH----HHHHHHHHcCccHHHcCCceeEEEeec
Confidence 999999999876555544 677777888999999999998754211 111111100 112333 46899999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy8073 543 KSGDNILDALIALSRHV 559 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l 559 (593)
++|.|++.|.+++.-..
T Consensus 299 l~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 299 LTGENLDLLEEAILLLA 315 (683)
T ss_pred ccCCChHHHHHHHHHHH
Confidence 99999999999876543
No 257
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.42 E-value=8.3e-13 Score=141.87 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=100.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--cccc------------------------C---CCCccceeeEEEEEEECCee
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--VFLN------------------------K---LGSTLGVDFQMKTIRVDERN 440 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~------------------------~---~~~t~g~~~~~~~~~~~~~~ 440 (593)
...++|+++|+.++|||||+.+|+.. .... . ....-|.+.......+...+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45689999999999999999998752 1000 0 00113445555555566666
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhc-------HHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCC-
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERS-------FNSVKNWVEAVEEVTENSIP-IVICANKVDLRA- 511 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s-------~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~- 511 (593)
..+.|+||||+++|.......+..||++|+|+|++.+.. -+..+.|. .+. ..++| +|||+||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~---~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAF---TLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHH---HcCCCeEEEEEEccccccc
Confidence 889999999999997777778899999999999987531 12323232 222 23466 679999999532
Q ss_pred ccccccccccCHHHHHHHHHHh-----CCeEEEEcCCCCCCHHH
Q psy8073 512 DAQAKGVKCIDREVGEKLAQQY-----GAIFMETSSKSGDNILD 550 (593)
Q Consensus 512 ~~~~~~~~~v~~~~~~~l~~~~-----~~~~~e~Sa~~g~gi~~ 550 (593)
.+.......+. ..+..+.... +++++++||.+|.|+.+
T Consensus 161 ~~~~~~~~~i~-~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIK-KEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHH-HHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111111121 2223333332 35799999999999864
No 258
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.41 E-value=2.8e-13 Score=126.17 Aligned_cols=118 Identities=21% Similarity=0.395 Sum_probs=73.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEE-CCeeEEEEEEecCCchhhhhhhHh---hccCCC
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV-DERNVALQLWDTAGQERFRSMTKN---YFRRAD 466 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~-~~~~~~~~l~DTaG~e~~~~~~~~---~~~~ad 466 (593)
+...|+|+|++|+|||+|+..|..+.+...+.+. . ......+ ...+..+.++|+||+++.+..... +...+-
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~--e--~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM--E--NNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S--S--EEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc--c--CCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 3457999999999999999999988533222222 1 1111112 223457899999999988665544 488999
Q ss_pred EEEEEEeCCC-hhcHHHHHH-HHHHHHHHc--CCCCcEEEEEeCCCCCCc
Q psy8073 467 GVMLLYDVTN-ERSFNSVKN-WVEAVEEVT--ENSIPIVICANKVDLRAD 512 (593)
Q Consensus 467 ~vi~v~D~~~-~~s~~~~~~-~~~~i~~~~--~~~~piivV~NK~Dl~~~ 512 (593)
+||||+|++. ......+.+ ++..+.... ...+|++|++||.|+..+
T Consensus 78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 9999999974 334444444 444444333 467999999999999765
No 259
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.41 E-value=1.8e-12 Score=126.21 Aligned_cols=166 Identities=19% Similarity=0.264 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEE-CCeeEEEEEEecCCchhhh-----hhhHhhccCCCE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV-DERNVALQLWDTAGQERFR-----SMTKNYFRRADG 467 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~-~~~~~~~~l~DTaG~e~~~-----~~~~~~~~~ad~ 467 (593)
||+++|+.++||||+.+.+..+-.+.. ...+|.|..+....+ ....+.+.|||+||+..+. ......++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999999988753332 233333333333333 1224789999999986553 345678999999
Q ss_pred EEEEEeCCChhcHHHHHH---HHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC---CeEEEEc
Q psy8073 468 VMLLYDVTNERSFNSVKN---WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG---AIFMETS 541 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~---~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~---~~~~e~S 541 (593)
+|+|+|+.+.....++.. .+..+....+ ++.+.|.++|+|+...........-........+...+ +.++.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999985555455544 3444444444 58899999999997542211111111122222333444 6788888
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccc
Q psy8073 542 SKSGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
.-+ ..+ +++..+.+....|.
T Consensus 159 I~D-~Sl---y~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 159 IWD-ESL---YEAWSKIVQKLIPN 178 (232)
T ss_dssp TTS-THH---HHHHHHHHHTTSTT
T ss_pred CcC-cHH---HHHHHHHHHHHccc
Confidence 877 344 44545545444443
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.40 E-value=3.4e-12 Score=145.00 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=83.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--cc--ccCCC------------CccceeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--VF--LNKLG------------STLGVDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--~~--~~~~~------------~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
.+..+|+|+|++|+|||||+++|+.. .. .+.+. ...|++.......+...+..+.||||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 45578999999999999999999742 10 01111 1223344333333333447899999999988
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
|...+...++.+|++|+|+|++.+...++..-|. .+ ...++|+|+|+||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~-~~---~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWR-QA---DKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHH-HH---HHcCCCEEEEEECCCCCC
Confidence 8777888999999999999999876555443232 22 234589999999999874
No 261
>KOG0031|consensus
Probab=99.40 E-value=2.7e-12 Score=112.01 Aligned_cols=131 Identities=17% Similarity=0.245 Sum_probs=111.2
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+|+++|.+.|.|+||+|..+||+.++..+| .+.+++++|+++. .|.|+|.-|+++|...+.+.+++.....++
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~~AF 107 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVILNAF 107 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 5899999999999999999999999999998 5667888999986 589999999999999998888887777788
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
..+++.+.+- .....++.+|++.|+.. ++++|..+|... ..+.++...|+.|...+.
T Consensus 108 ~~FD~~~~G~---I~~d~lre~Ltt~gDr~-------~~eEV~~m~r~~---p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 108 KTFDDEGSGK---IDEDYLRELLTTMGDRF-------TDEEVDEMYREA---PIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HhcCccCCCc---cCHHHHHHHHHHhcccC-------CHHHHHHHHHhC---CcccCCceeHHHHHHHHH
Confidence 8877765433 33557999999999987 999999999887 222367788999888776
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.39 E-value=2.7e-12 Score=145.85 Aligned_cols=144 Identities=18% Similarity=0.240 Sum_probs=95.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--c--ccCCCC------------ccceeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--F--LNKLGS------------TLGVDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--~--~~~~~~------------t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
.+-.+|+|+|++|+|||||+++|+... . .+.... ..|++.......+...++.+.||||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 445699999999999999999997421 0 000000 134444444444444458899999999998
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
|...+..+++.+|++|+|+|+++....+...-|. .+. ..++|+|+|+||+|+.... .......+...+
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~~~--------~~~~~~~i~~~l 155 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWR-QAN---RYEVPRIAFVNKMDKTGAN--------FLRVVNQIKQRL 155 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHH-HHH---HcCCCEEEEEECCCCCCCC--------HHHHHHHHHHHh
Confidence 8777888999999999999999876665544333 232 3358999999999997531 122233344433
Q ss_pred CC----eEEEEcCCCC
Q psy8073 534 GA----IFMETSSKSG 545 (593)
Q Consensus 534 ~~----~~~e~Sa~~g 545 (593)
+. ..+++||..+
T Consensus 156 ~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 156 GANAVPIQLPIGAEDN 171 (689)
T ss_pred CCCceeEEeccccCCC
Confidence 32 2567777665
No 263
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.38 E-value=6.1e-12 Score=124.92 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=104.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc-ccCCC-CccceeeEEEEEEECCeeEEEEEEecCCc-hhh---h---hhhHhhccC
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVF-LNKLG-STLGVDFQMKTIRVDERNVALQLWDTAGQ-ERF---R---SMTKNYFRR 464 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~-~~~~~-~t~g~~~~~~~~~~~~~~~~~~l~DTaG~-e~~---~---~~~~~~~~~ 464 (593)
-|.+||-|||||||||+++..... .+.|. +|+--..- .+.++ ..-.|.+-|.||. |.- . ......+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG--vV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG--VVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc--EEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 678999999999999999987631 22232 22211122 22222 2356999999993 211 1 122334678
Q ss_pred CCEEEEEEeCCChh---cHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe-EE
Q psy8073 465 ADGVMLLYDVTNER---SFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FM 538 (593)
Q Consensus 465 ad~vi~v~D~~~~~---s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~-~~ 538 (593)
+-++++|+|++... ..++...+..++..+.. .+.|.+||+||+|+..... -.......+....+.. ++
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e------~~~~~~~~l~~~~~~~~~~ 311 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE------ELEELKKALAEALGWEVFY 311 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHH------HHHHHHHHHHHhcCCCcce
Confidence 99999999998544 35666667777777654 5689999999999654311 1122233344444433 22
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 539 ETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
.+||.++.|+++++..+.+.+....
T Consensus 312 ~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 312 LISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred eeehhcccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999887753
No 264
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.35 E-value=1e-11 Score=133.08 Aligned_cols=164 Identities=20% Similarity=0.146 Sum_probs=102.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcc---cc----CCCCccceeeEEE---------EE--EECC-------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVF---LN----KLGSTLGVDFQMK---------TI--RVDE------------- 438 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~---~~----~~~~t~g~~~~~~---------~~--~~~~------------- 438 (593)
...++|+++|+...|||||+.+|++... .. ..+-.+|...... .. ....
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568999999999999999999986421 00 0011122211100 00 0000
Q ss_pred ---eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCCh-hcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 439 ---RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNE-RSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 439 ---~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
....+.|+||||++.|.......+..+|++|+|+|++.+ ...+..+.| ..+....- .|+|||+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lgi--~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIMKL--KHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHcCC--CcEEEEEecccccCHHH
Confidence 013689999999999977777778899999999999874 233333322 22222221 46899999999975311
Q ss_pred cccccccCHHHHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 515 AKGVKCIDREVGEKLAQQ---YGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~---~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
...+ .+....+... .+++++++||++|.||+.|+++|...+.
T Consensus 189 ---~~~~-~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 ---AQDQ-YEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred ---HHHH-HHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 0001 1222222222 2568999999999999999999886553
No 265
>KOG1144|consensus
Probab=99.34 E-value=2.1e-10 Score=122.77 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=114.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCcc----ccCCCCccceeeEEEE----------------EEECCeeEEEEEEec
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVF----LNKLGSTLGVDFQMKT----------------IRVDERNVALQLWDT 448 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~----~~~~~~t~g~~~~~~~----------------~~~~~~~~~~~l~DT 448 (593)
.-+.+-|+|+|+..+|||-|+..+-+..+ .+.....+|.+|.+.. +.+.| +.++||
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg----~lvIdt 547 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPG----LLVIDT 547 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCe----eEEecC
Confidence 34567899999999999999999876532 2223344666666544 22222 678999
Q ss_pred CCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccC------
Q psy8073 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCID------ 522 (593)
Q Consensus 449 aG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~------ 522 (593)
||++.|..++......||++|+|+|+..+...+.+. .|..+...+.|+||..||+|....|.......|.
T Consensus 548 pghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiE----Si~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ 623 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE----SINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ 623 (1064)
T ss_pred CCchhhhhhhhccccccceEEEEeehhccCCcchhH----HHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHh
Confidence 999999999999999999999999998765444433 3344445669999999999987665422111111
Q ss_pred -----HHH-------HHHHHHH-h-------------CCeEEEEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 523 -----REV-------GEKLAQQ-Y-------------GAIFMETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 523 -----~~~-------~~~l~~~-~-------------~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
.+. ...|+.. + -++++++||.+|.||.+|+.+|+..-...+
T Consensus 624 ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 111 1111110 0 135789999999999999999988655543
No 266
>KOG0077|consensus
Probab=99.33 E-value=4.9e-12 Score=112.28 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=111.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.-|++++|--|+|||||++.|.... .+...||. -.....+.+.+ +.++-+|.+|+-.-+..++.|+..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDr-l~qhvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDR-LGQHVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccc-ccccCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 345699999999999999999987775 45555553 22334455665 88999999999888888999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH---H-----------HhC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA---Q-----------QYG 534 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~---~-----------~~~ 534 (593)
+.||+-|..-|...+.-++.+... .-..+|+++.+||+|...+. ...+.+... . ..+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--------se~~l~~~l~l~~~t~~~~~v~~~~~~ 164 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--------SEDELRFHLGLSNFTTGKGKVNLTDSN 164 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--------cHHHHHHHHHHHHHhcccccccccCCC
Confidence 999999998887776544433332 23569999999999997652 222211110 0 001
Q ss_pred ---CeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 535 ---AIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 535 ---~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
..++.||...+.|--+.|.|+...
T Consensus 165 ~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 165 VRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCeEEEEEEEEEccCccceeeeehhhh
Confidence 136678888888877777776543
No 267
>PRK09866 hypothetical protein; Provisional
Probab=99.32 E-value=5.5e-11 Score=127.92 Aligned_cols=109 Identities=25% Similarity=0.273 Sum_probs=70.8
Q ss_pred EEEEEEecCCchh-----hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc
Q psy8073 441 VALQLWDTAGQER-----FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQA 515 (593)
Q Consensus 441 ~~~~l~DTaG~e~-----~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~ 515 (593)
..+.|+||||... +.......+..||+||+|+|++...+..+ ......+..... ..|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K-~~PVILVVNKIDl~dree- 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ-SVPLYVLVNKFDQQDRNS- 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC-CCCEEEEEEcccCCCccc-
Confidence 3477999999532 22334457899999999999987655443 223334443222 259999999999854211
Q ss_pred ccccccCHHHHHHHHH----H--h-CCeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 516 KGVKCIDREVGEKLAQ----Q--Y-GAIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 516 ~~~~~v~~~~~~~l~~----~--~-~~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
-..+....+.. . . ...+|+|||+.|.|++.++..|..
T Consensus 307 -----ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 -----DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred -----chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 01222222211 1 1 235899999999999999998866
No 268
>KOG0462|consensus
Probab=99.32 E-value=6.3e-12 Score=130.96 Aligned_cols=163 Identities=23% Similarity=0.264 Sum_probs=115.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcc--cc-----------CCCCccceeeEEEEEEE---CCeeEEEEEEecCCchh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVF--LN-----------KLGSTLGVDFQMKTIRV---DERNVALQLWDTAGQER 453 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~--~~-----------~~~~t~g~~~~~~~~~~---~~~~~~~~l~DTaG~e~ 453 (593)
.+--+++|+-+..-|||||..+|+.-.- .. .....-|.++...+..+ +|..+.+.|+||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3445899999999999999999864310 11 11123355555544433 45669999999999999
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
|..-....+..||++|+|+|++.+..-+.+..++..+ ..+..+|.|+||+|+..+.. ..| ......+....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adp----e~V-~~q~~~lF~~~ 208 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADP----ERV-ENQLFELFDIP 208 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCH----HHH-HHHHHHHhcCC
Confidence 9777777788999999999999887777766544333 34578999999999986521 111 12222333333
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 534 GAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 534 ~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
+...+.+|||+|.|+.+++.+|++.+..
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 4568899999999999999999888763
No 269
>KOG0090|consensus
Probab=99.32 E-value=1.2e-11 Score=114.72 Aligned_cols=161 Identities=19% Similarity=0.269 Sum_probs=104.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhcc---CCCEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFR---RADGV 468 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~---~ad~v 468 (593)
...|.++|+.++|||+|+-.|..+.+.+.+.+ ..-......+.. ..+.|+|.||+.+.+.....++. .|-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 35799999999999999999988753332211 122222333333 34899999999999887777777 79999
Q ss_pred EEEEeCCC-hhcHHHHHH-HHHHHHHH--cCCCCcEEEEEeCCCCCCccccccccccCHHHHHH----------------
Q psy8073 469 MLLYDVTN-ERSFNSVKN-WVEAVEEV--TENSIPIVICANKVDLRADAQAKGVKCIDREVGEK---------------- 528 (593)
Q Consensus 469 i~v~D~~~-~~s~~~~~~-~~~~i~~~--~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~---------------- 528 (593)
|||+|..- .....++.. +++.+... ....+|++|++||.|+..+....-.+.....++..
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999863 223334444 45555444 35679999999999997552211111111111111
Q ss_pred --------------HHHH--hCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 529 --------------LAQQ--YGAIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 529 --------------l~~~--~~~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
|++. ..+.|.++|+++| +++++..||.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1111 2245889999998 999999998764
No 270
>PTZ00258 GTP-binding protein; Provisional
Probab=99.31 E-value=4e-11 Score=125.04 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceee--EEEEEEECCe---------------eEEEEEEecCC
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDF--QMKTIRVDER---------------NVALQLWDTAG 450 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~--~~~~~~~~~~---------------~~~~~l~DTaG 450 (593)
....+++|+|||.||||||||+|+|++... ..+..++++. ....+.+.+. ..++.|+||||
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 346778999999999999999999987652 2333333433 3333333321 23589999999
Q ss_pred chh-------hhhhhHhhccCCCEEEEEEeCC
Q psy8073 451 QER-------FRSMTKNYFRRADGVMLLYDVT 475 (593)
Q Consensus 451 ~e~-------~~~~~~~~~~~ad~vi~v~D~~ 475 (593)
... ........++.||++|+|+|+.
T Consensus 95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 421 2223445678899999999984
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.30 E-value=2e-11 Score=138.84 Aligned_cols=110 Identities=18% Similarity=0.307 Sum_probs=76.1
Q ss_pred EcCCCCcHHHHHHHHhcCc---cc-cCC--CC----------ccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhh
Q psy8073 398 AGDAAVGKSCFIYRFSKEV---FL-NKL--GS----------TLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNY 461 (593)
Q Consensus 398 vG~~nvGKSSLln~l~~~~---~~-~~~--~~----------t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~ 461 (593)
+|++|+|||||+++|+... .. +.+ +. ..|.+.......+...++.+.||||||+..|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 6999999999999995431 00 000 00 02223333223333334889999999999887778888
Q ss_pred ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 462 FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
+..+|++|+|+|++..........|.. +. ..++|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~-~~---~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQ-AE---KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHH-HH---HcCCCEEEEEECCCCCC
Confidence 999999999999998777665543432 22 34589999999999864
No 272
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=111.21 Aligned_cols=135 Identities=16% Similarity=0.261 Sum_probs=108.8
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHH--HHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPT--DSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~--e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
++++++|.++|+|++|+|++.+|..+++.+|.+++ ++.+||..+|. ++|.|+|.+|+.+|........+......++
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 57999999999999999999999999998886655 55699999999 8999999999999999876555555555666
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+.... +-.+...++.++..+|+.. ++++|..|+... +. +..+-.+|++|+..+..
T Consensus 99 ~~fD~d~d---G~Is~~eL~~vl~~lge~~-------~deev~~ll~~~--d~-d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 99 KLFDKDHD---GYISIGELRRVLKSLGERL-------SDEEVEKLLKEY--DE-DGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHhCCCCC---ceecHHHHHHHHHhhcccC-------CHHHHHHHHHhc--CC-CCCceEeHHHHHHHHhc
Confidence 55554432 2233456999999999988 999999999988 32 34677899999987654
No 273
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=1.7e-11 Score=125.71 Aligned_cols=159 Identities=21% Similarity=0.282 Sum_probs=113.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCc-------cccC------CCCccceeeEEE--EEEE---CCeeEEEEEEecCCch
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEV-------FLNK------LGSTLGVDFQMK--TIRV---DERNVALQLWDTAGQE 452 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~-------~~~~------~~~t~g~~~~~~--~~~~---~~~~~~~~l~DTaG~e 452 (593)
+--+..|+.+-.-|||||..+|+... .... ....-|.+.-.. .+.+ +|..+.+.|+||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 33467889999999999999986531 0000 111223333322 2222 5678999999999999
Q ss_pred hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH
Q psy8073 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ 532 (593)
Q Consensus 453 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~ 532 (593)
.|.--....+..|.++|+|+|++.+..-+.+...+..+. .+.-||-|.||+||+.+. +.....++..-
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Ad--------pervk~eIe~~ 155 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAAD--------PERVKQEIEDI 155 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCC--------HHHHHHHHHHH
Confidence 996555666778999999999999887777776555553 357899999999997652 22334445555
Q ss_pred hCC---eEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 533 YGA---IFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 533 ~~~---~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
+|+ ..+.||||+|.||++++++|+..+..
T Consensus 156 iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 156 IGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred hCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 665 37889999999999999999888763
No 274
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2e-11 Score=124.30 Aligned_cols=159 Identities=20% Similarity=0.300 Sum_probs=107.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--c----------------------ccCCCC-----ccceeeEEEEEEECCee
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--F----------------------LNKLGS-----TLGVDFQMKTIRVDERN 440 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--~----------------------~~~~~~-----t~g~~~~~~~~~~~~~~ 440 (593)
...++++++|++++|||||+-+|+... + .-.... --|.+++.....+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 467899999999999999999986431 0 001111 24667777777776666
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhc---H---HHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERS---F---NSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s---~---~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
+.+.|+|+||+..|..-....+..||++|+|+|+.+... | ...+... .+....+ -..+||++||+|+.+ |.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlG-i~~lIVavNKMD~v~-wd 161 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLG-IKQLIVAVNKMDLVS-WD 161 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcC-CceEEEEEEcccccc-cC
Confidence 889999999999998778888889999999999988631 1 0112111 1111112 245889999999986 44
Q ss_pred cccccccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q psy8073 515 AKGVKCIDREVGEKLAQQYG-----AIFMETSSKSGDNILDAL 552 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~~l~ 552 (593)
......+..+... +.+..| ++|++|||.+|.|+.+.-
T Consensus 162 e~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 162 EERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred HHHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCcccccC
Confidence 4333333333333 555554 459999999999976543
No 275
>KOG0410|consensus
Probab=99.28 E-value=1e-11 Score=121.75 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=108.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC---------chhhhhhhH
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG---------QERFRSMTK 459 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG---------~e~~~~~~~ 459 (593)
.....-|++||++|+|||||+++|++....+...-++..|.......+..+ ..+.+.||.| +..|.+ +.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~A-TL 252 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQA-TL 252 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHH-HH
Confidence 345578999999999999999999965544444444445555555655543 4588999999 345544 34
Q ss_pred hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc----EEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP----IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA 535 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p----iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~ 535 (593)
..+..||++|.|.|++.|..-+.....+..+..+.-...| +|=|-||+|...... . ...++
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-------e-------~E~n~- 317 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-------E-------EEKNL- 317 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-------c-------cccCC-
Confidence 4567899999999999998766655555555555433233 567889998754311 1 11222
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 536 IFMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 536 ~~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
.+.+||++|.|++++++.+-..+..-
T Consensus 318 -~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 318 -DVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred -ccccccccCccHHHHHHHHHHHhhhh
Confidence 46799999999999999988777653
No 276
>PRK00007 elongation factor G; Reviewed
Probab=99.28 E-value=1.5e-11 Score=139.55 Aligned_cols=145 Identities=18% Similarity=0.229 Sum_probs=95.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC--ccc--cCCC------------CccceeeEEEEEEECCeeEEEEEEecCCch
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE--VFL--NKLG------------STLGVDFQMKTIRVDERNVALQLWDTAGQE 452 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~--~~~--~~~~------------~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e 452 (593)
..+-.+|+|+|++|+|||||+++|+.. ... +.+. ...|++.......+...+..+.|+||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 344569999999999999999999731 100 1111 123344444334443345789999999998
Q ss_pred hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH
Q psy8073 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ 532 (593)
Q Consensus 453 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~ 532 (593)
.|.......++.+|++|+|+|+......++..-|.. + ...++|+|+|+||+|+.... .......+...
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~-~---~~~~~p~iv~vNK~D~~~~~--------~~~~~~~i~~~ 154 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQ-A---DKYKVPRIAFVNKMDRTGAD--------FYRVVEQIKDR 154 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHH-H---HHcCCCEEEEEECCCCCCCC--------HHHHHHHHHHH
Confidence 886667778889999999999988766665543432 2 23458999999999987531 12233344444
Q ss_pred hCC----eEEEEcCCCC
Q psy8073 533 YGA----IFMETSSKSG 545 (593)
Q Consensus 533 ~~~----~~~e~Sa~~g 545 (593)
++. ..+++||..+
T Consensus 155 l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 155 LGANPVPIQLPIGAEDD 171 (693)
T ss_pred hCCCeeeEEecCccCCc
Confidence 433 3567777766
No 277
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.27 E-value=2.6e-11 Score=106.86 Aligned_cols=114 Identities=26% Similarity=0.290 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCC-CccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLG-STLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
+||+++|+.|||||+|+.++....|...+. +|.| +......+++.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998887655444 4444 333445678889999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|+.++..++..+ |...+....+.++|+++++||+|+... ..+...... .++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~------~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEE------RQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhh------CcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999998765 888777666667899999999998542 123333232 34568999999984
No 278
>KOG0027|consensus
Probab=99.27 E-value=2.4e-11 Score=111.49 Aligned_cols=137 Identities=19% Similarity=0.321 Sum_probs=105.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHH--HHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhh----c
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPT--DSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRL----K 76 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~--e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~----~ 76 (593)
..+++++|..||++++|+|+..+|..+++.+|.+|+ ++..++..+|.|++|.|+|++|+.++........... .
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 357999999999999999999999999999997644 6669999999999999999999999987654332211 2
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...++...+.. +.+-.+...+..+|..+|+.. +.+++..++... +.+ -.+..+|++|+..+..
T Consensus 87 l~eaF~~fD~d---~~G~Is~~el~~~l~~lg~~~-------~~~e~~~mi~~~--d~d-~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 87 LKEAFRVFDKD---GDGFISASELKKVLTSLGEKL-------TDEECKEMIREV--DVD-GDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHccC---CCCcCcHHHHHHHHHHhCCcC-------CHHHHHHHHHhc--CCC-CCCeEeHHHHHHHHhc
Confidence 22233333332 233345567999999999987 889999999988 443 3556699999987653
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.25 E-value=7.3e-11 Score=136.15 Aligned_cols=153 Identities=20% Similarity=0.261 Sum_probs=91.4
Q ss_pred CcHHHHHHHHhcCccccC----CCCccceeeEEEEEE------------ECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 403 VGKSCFIYRFSKEVFLNK----LGSTLGVDFQMKTIR------------VDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 403 vGKSSLln~l~~~~~~~~----~~~t~g~~~~~~~~~------------~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
++||||+.++.+..+... .+..+|..+...... .....-.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999987654221 222233332221100 0000012899999999999888888889999
Q ss_pred EEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccccc-----------CHHH-------HHH
Q psy8073 467 GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCI-----------DREV-------GEK 528 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v-----------~~~~-------~~~ 528 (593)
++|+|||+++....+... .+..+. ..++|+|+|+||+|+...+.......+ ..+. ...
T Consensus 552 ivlLVVDa~~Gi~~qT~e-~I~~lk---~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIE-AINILR---QYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEEECcccCCHhHHH-HHHHHH---HcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 999999999743322222 112222 235899999999999754321100000 0000 001
Q ss_pred HHH------------Hh--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 529 LAQ------------QY--GAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 529 l~~------------~~--~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
++. .+ .+++++|||++|.||++|+.+|....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 111 11 35799999999999999998876543
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.23 E-value=2.7e-11 Score=137.99 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=84.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC---------------ccccC---CCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE---------------VFLNK---LGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~---------------~~~~~---~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
....+|+|+|+.++|||||+++|+.. .+... .+.|+...+......+++.++.+.||||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34579999999999999999999742 11110 1223333333333345677799999999999
Q ss_pred hhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 452 e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
.+|......+++.+|++|+|+|+......+....|.. ....++|+++|+||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~----~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ----ALKENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH----HHHcCCCEEEEEEChhccc
Confidence 9998888889999999999999988654444333332 2233578899999999853
No 281
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.21 E-value=5.5e-11 Score=100.77 Aligned_cols=137 Identities=20% Similarity=0.281 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC----chhhhhhhHhhccCCCEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG----QERFRSMTKNYFRRADGV 468 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG----~e~~~~~~~~~~~~ad~v 468 (593)
-||++||..|+|||||+++|.+.... +..|-.++| +.. -.+|||| +.++.+-.......+|++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh--hcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 37999999999999999999887522 223322222 111 2479999 333333344556799999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~g 547 (593)
++|-.++++.|.-.- .+... ...|+|-|++|+||.... .-+..+.+....|+ ++|++|+.++.|
T Consensus 69 ~~v~~and~~s~f~p-----~f~~~--~~k~vIgvVTK~DLaed~--------dI~~~~~~L~eaGa~~IF~~s~~d~~g 133 (148)
T COG4917 69 IYVHAANDPESRFPP-----GFLDI--GVKKVIGVVTKADLAEDA--------DISLVKRWLREAGAEPIFETSAVDNQG 133 (148)
T ss_pred eeeecccCccccCCc-----ccccc--cccceEEEEecccccchH--------hHHHHHHHHHHcCCcceEEEeccCccc
Confidence 999999998653211 12222 235799999999998531 12334455556665 699999999999
Q ss_pred HHHHHHHHHH
Q psy8073 548 ILDALIALSR 557 (593)
Q Consensus 548 i~~l~~~L~~ 557 (593)
|++++..|..
T Consensus 134 v~~l~~~L~~ 143 (148)
T COG4917 134 VEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 282
>KOG3905|consensus
Probab=99.20 E-value=4.2e-10 Score=110.32 Aligned_cols=191 Identities=18% Similarity=0.227 Sum_probs=124.9
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEE--CCeeEEEEEEecCCchhhhhhhHhhccCC
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV--DERNVALQLWDTAGQERFRSMTKNYFRRA 465 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~--~~~~~~~~l~DTaG~e~~~~~~~~~~~~a 465 (593)
....+-.|+|+|+.++||||||.+|-+.+ ... .--|..|....+.- .+.-..+.+|=.-|.-....+.+..+...
T Consensus 48 klpsgk~VlvlGdn~sGKtsLi~klqg~e-~~K--kgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at 124 (473)
T KOG3905|consen 48 KLPSGKNVLVLGDNGSGKTSLISKLQGSE-TVK--KGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT 124 (473)
T ss_pred cCCCCCeEEEEccCCCchhHHHHHhhccc-ccC--CCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence 35567899999999999999999998765 222 33334444433332 22235567777777544445444444322
Q ss_pred ----CEEEEEEeCCChhc-HHHHHHHHHHHHHH-----------------------------------------------
Q psy8073 466 ----DGVMLLYDVTNERS-FNSVKNWVEAVEEV----------------------------------------------- 493 (593)
Q Consensus 466 ----d~vi~v~D~~~~~s-~~~~~~~~~~i~~~----------------------------------------------- 493 (593)
-+||++.|+++|.. .+.+..|...+...
T Consensus 125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~ 204 (473)
T KOG3905|consen 125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA 204 (473)
T ss_pred CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence 37899999999954 46677787765443
Q ss_pred --------------cCCCCcEEEEEeCCCCCCccc-----cccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q psy8073 494 --------------TENSIPIVICANKVDLRADAQ-----AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIA 554 (593)
Q Consensus 494 --------------~~~~~piivV~NK~Dl~~~~~-----~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~ 554 (593)
...++|++||++|||...--. ....-.+....+++||..+|+.+|.+|+|...||+-+...
T Consensus 205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence 012579999999999843210 0112233445678899999999999999999999999999
Q ss_pred HHHHHHhhccccccCCCCCCCcccccccc
Q psy8073 555 LSRHVYVFIPCVYLKDLPYTSVLIFIPFQ 583 (593)
Q Consensus 555 L~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 583 (593)
|++.++. -.+...........+++|.+
T Consensus 285 ivhr~yG--~~fttpAlVVEkdaVfIPAG 311 (473)
T KOG3905|consen 285 IVHRSYG--FPFTTPALVVEKDAVFIPAG 311 (473)
T ss_pred HHHHhcC--cccCCcceEeecceeEeccC
Confidence 9998874 22333333223334455543
No 283
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.20 E-value=4.9e-10 Score=119.78 Aligned_cols=190 Identities=18% Similarity=0.281 Sum_probs=129.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECC--eeEEEEEEecCCchhhhhhhHhhccC---
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDE--RNVALQLWDTAGQERFRSMTKNYFRR--- 464 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~--~~~~~~l~DTaG~e~~~~~~~~~~~~--- 464 (593)
...-.|+|+|..++||||||.+|.+.+ .+..+.|.+|....+.-++ ....+.+|-..|...+..+.+-.+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 445789999999999999999987654 3445667777665554322 22457889888865566555544442
Q ss_pred -CCEEEEEEeCCChhcH-HHHHHHHHHHHHH-------------------------------c-----------------
Q psy8073 465 -ADGVMLLYDVTNERSF-NSVKNWVEAVEEV-------------------------------T----------------- 494 (593)
Q Consensus 465 -ad~vi~v~D~~~~~s~-~~~~~~~~~i~~~-------------------------------~----------------- 494 (593)
--+||+|+|.+.|..+ +.+..|+..+..+ .
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 2478999999999765 4566677655433 0
Q ss_pred --------------CCCCcEEEEEeCCCCCCcccc-----ccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q psy8073 495 --------------ENSIPIVICANKVDLRADAQA-----KGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIAL 555 (593)
Q Consensus 495 --------------~~~~piivV~NK~Dl~~~~~~-----~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L 555 (593)
.-++||+||++|+|....... ...-.+....++.+|..||+.+|+||++...+++-|+..|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 014799999999997532111 1112244456788999999999999999999999999898
Q ss_pred HHHHHhhccccccCCCCCCCccccccccc
Q psy8073 556 SRHVYVFIPCVYLKDLPYTSVLIFIPFQK 584 (593)
Q Consensus 556 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 584 (593)
.+.++. .+ +...........++||.+-
T Consensus 260 ~h~l~~-~~-f~~~~~vv~~d~ifIP~Gw 286 (472)
T PF05783_consen 260 LHRLYG-FP-FKTPAQVVERDAIFIPAGW 286 (472)
T ss_pred HHHhcc-CC-CCCCceeecccccccCCCC
Confidence 888764 22 2222333444566777654
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.20 E-value=3.3e-10 Score=112.31 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=74.3
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--eeeEEEEEEECCeeEEEEEEecCCchhhh----------
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--VDFQMKTIRVDERNVALQLWDTAGQERFR---------- 455 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~~~~~~~~~~~~~~~~~~l~DTaG~e~~~---------- 455 (593)
.....++|+|+|.+|||||||+|+|++...... +...+ ..........++ ..+.+|||||.....
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 356679999999999999999999998753222 11111 223333334444 779999999954321
Q ss_pred hhhHhhcc--CCCEEEEEEeCCCh-hcHHHHHHHHHHHHHHcCCC--CcEEEEEeCCCCCCc
Q psy8073 456 SMTKNYFR--RADGVMLLYDVTNE-RSFNSVKNWVEAVEEVTENS--IPIVICANKVDLRAD 512 (593)
Q Consensus 456 ~~~~~~~~--~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~--~piivV~NK~Dl~~~ 512 (593)
.....++. ..|++++|..++.. ..+.+ ...+..|....+.. .++|+|.||+|...+
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 11222332 57899998766543 23322 23334444433322 479999999998643
No 285
>KOG1490|consensus
Probab=99.19 E-value=8.8e-11 Score=121.30 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc-----hhhhhhh----Hhhc
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ-----ERFRSMT----KNYF 462 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~-----e~~~~~~----~~~~ 462 (593)
...++|+|.||||||||+|.+....+...+-++....+.+. .++..-..++++||||+ |..+.+- ....
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 35789999999999999999887754333323321222222 23333467899999994 2111111 1111
Q ss_pred cCCCEEEEEEeCCC--hhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEE
Q psy8073 463 RRADGVMLLYDVTN--ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMET 540 (593)
Q Consensus 463 ~~ad~vi~v~D~~~--~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~ 540 (593)
.--.+|+++.|++. +-|......++..|+-... +.|+|+|+||+|+....+ +..-.......+....+++++.+
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~ed---L~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPED---LDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccc---cCHHHHHHHHHHHhccCceEEEe
Confidence 22347889999975 4455555556666665554 589999999999875422 22222344555556666899999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy8073 541 SSKSGDNILDALIALSRH 558 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~ 558 (593)
|+.+.+||.++....+..
T Consensus 322 S~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEA 339 (620)
T ss_pred cccchhceeeHHHHHHHH
Confidence 999999998877554443
No 286
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.17 E-value=2.8e-10 Score=114.39 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=72.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--eeeEEEEEEECCeeEEEEEEecCCchhhh-------hhhHh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--VDFQMKTIRVDERNVALQLWDTAGQERFR-------SMTKN 460 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~~~~~~~~~~~~~~~~~~l~DTaG~e~~~-------~~~~~ 460 (593)
...++|+|+|.+||||||++|+|++..+.. .+.+.+ ..........+| ..+.+|||||..... ...+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~-vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIAT-VSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 567899999999999999999999875321 222222 222222333444 789999999954321 11222
Q ss_pred hc--cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCC--CCcEEEEEeCCCCCC
Q psy8073 461 YF--RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN--SIPIVICANKVDLRA 511 (593)
Q Consensus 461 ~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piivV~NK~Dl~~ 511 (593)
++ ...|++|+|..++.......-..++..+....+. -.++|||+|++|...
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 22 2689999996654321111112234444444322 247899999999753
No 287
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.16 E-value=3.4e-10 Score=111.02 Aligned_cols=145 Identities=15% Similarity=0.228 Sum_probs=86.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
...+..|+|+|.+|+|||||+|.+++..-........|. + .+ +...+..+.++||||.- ......+..+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence 455688999999999999999999875312222222232 1 11 11234678999999953 2223446889999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcE-EEEEeCCCCCCccccccccccCHHHHHHHHHH--hCCeEEEEcCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPI-VICANKVDLRADAQAKGVKCIDREVGEKLAQQ--YGAIFMETSSKSG 545 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~--~~~~~~e~Sa~~g 545 (593)
|+|+|++.+...... .++..+.. .+.|. |+|+||+|+..... ....+.......+... .+.+++.+||+++
T Consensus 108 llviDa~~~~~~~~~-~i~~~l~~---~g~p~vi~VvnK~D~~~~~~--~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 108 LLLIDASFGFEMETF-EFLNILQV---HGFPRVMGVLTHLDLFKKNK--TLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEecCcCCCHHHH-HHHHHHHH---cCCCeEEEEEeccccCCcHH--HHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 999999876544332 23333332 34674 55999999864311 0111222222223322 2467999999997
Q ss_pred CC
Q psy8073 546 DN 547 (593)
Q Consensus 546 ~g 547 (593)
-.
T Consensus 182 ~~ 183 (225)
T cd01882 182 GR 183 (225)
T ss_pred CC
Confidence 43
No 288
>PRK13768 GTPase; Provisional
Probab=99.15 E-value=1.3e-10 Score=115.78 Aligned_cols=118 Identities=17% Similarity=0.249 Sum_probs=71.3
Q ss_pred EEEEEecCCchhh---hhhhHhh---ccC--CCEEEEEEeCCChhcHHHHHH--HHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 442 ALQLWDTAGQERF---RSMTKNY---FRR--ADGVMLLYDVTNERSFNSVKN--WVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 442 ~~~l~DTaG~e~~---~~~~~~~---~~~--ad~vi~v~D~~~~~s~~~~~~--~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
.+.+|||||+..+ +.....+ +.. ++++|+|+|++......+... |+...... ..++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 4889999997543 2222222 222 899999999976554433322 33322222 23589999999999875
Q ss_pred ccccccccc-cC----------------HHHHHHH---HHHhC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 512 DAQAKGVKC-ID----------------REVGEKL---AQQYG--AIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 512 ~~~~~~~~~-v~----------------~~~~~~l---~~~~~--~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
......... +. ......+ ...++ ..++++||+++.|+++++.+|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 422110000 00 0001111 22334 47899999999999999999987764
No 289
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.15 E-value=6.5e-10 Score=113.99 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=91.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcccc--------------CCCCccc---eeeEEEE-------EE-ECCeeEEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLN--------------KLGSTLG---VDFQMKT-------IR-VDERNVALQ 444 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~--------------~~~~t~g---~~~~~~~-------~~-~~~~~~~~~ 444 (593)
...+-|.|+|+.|+|||||+|+|++.-+.+ .+.+..| +|..++. +. .++-..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 345889999999999999999999872211 2334444 3333322 22 244557899
Q ss_pred EEecCCch--------hhhh---------------------hhHhhcc-CCCEEEEEE-eCC----ChhcHHHH-HHHHH
Q psy8073 445 LWDTAGQE--------RFRS---------------------MTKNYFR-RADGVMLLY-DVT----NERSFNSV-KNWVE 488 (593)
Q Consensus 445 l~DTaG~e--------~~~~---------------------~~~~~~~-~ad~vi~v~-D~~----~~~s~~~~-~~~~~ 488 (593)
|+||+|.. +-.. =++..+. ++|+.|+|. |.+ .+..+... ..|+.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999921 1100 0344455 999999998 774 11222222 33665
Q ss_pred HHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCC
Q psy8073 489 AVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKS 544 (593)
Q Consensus 489 ~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~ 544 (593)
.++. .++|+|+|.||+|.... -.......+...|+++++.+||..
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~--------et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHP--------ETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCc--------hhHHHHHHHHHHhCCceEEEEHHH
Confidence 5554 45899999999994322 123344566778898888888753
No 290
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.14 E-value=1e-09 Score=113.18 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccce--eeEEEEEEECCee---------------EEEEEEecCCchh--
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV--DFQMKTIRVDERN---------------VALQLWDTAGQER-- 453 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~--~~~~~~~~~~~~~---------------~~~~l~DTaG~e~-- 453 (593)
++|+|||.||||||||+|+|++... .....+++ +.....+.+.+.. ..+.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 7999999999999999999998762 22222223 3333344443321 2589999999432
Q ss_pred -----hhhhhHhhccCCCEEEEEEeCC
Q psy8073 454 -----FRSMTKNYFRRADGVMLLYDVT 475 (593)
Q Consensus 454 -----~~~~~~~~~~~ad~vi~v~D~~ 475 (593)
........++.||++|+|+|+.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1223344578999999999984
No 291
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.13 E-value=3e-10 Score=112.68 Aligned_cols=96 Identities=24% Similarity=0.343 Sum_probs=77.9
Q ss_pred hhhhhhhHhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH
Q psy8073 452 ERFRSMTKNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA 530 (593)
Q Consensus 452 e~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~ 530 (593)
++|..+.+.+++++|++|+|||++++. ++..+..|+..+.. .++|+++|+||+||... ..+..+....+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~------~~~~~~~~~~~~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDD------EDMEKEQLDIYR 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCC------HHHHHHHHHHHH
Confidence 788888999999999999999999887 89999999876653 45899999999999643 123333444444
Q ss_pred HHhCCeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 531 QQYGAIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 531 ~~~~~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
..+..++++||++|.||++++..|..
T Consensus 95 -~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 -NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 47888999999999999999988763
No 292
>KOG1532|consensus
Probab=99.09 E-value=3.8e-10 Score=108.39 Aligned_cols=125 Identities=22% Similarity=0.230 Sum_probs=69.6
Q ss_pred EEEEEEecCCc-hhh-hh----h-hHhhc-cCCCEEEEEEeCCC---hhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCC
Q psy8073 441 VALQLWDTAGQ-ERF-RS----M-TKNYF-RRADGVMLLYDVTN---ERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509 (593)
Q Consensus 441 ~~~~l~DTaG~-e~~-~~----~-~~~~~-~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl 509 (593)
+.+.|+||||| |.| ++ + +..+. ...-+|++|+|... +.+|-.-- ++. -..+.....|+|+|.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNM-lYA-cSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNM-LYA-CSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHH-HHH-HHHHHhccCCeEEEEecccc
Confidence 45789999994 555 22 1 12221 23347778888643 44442110 111 11122345899999999999
Q ss_pred CCccccccc-------------------cccCHHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHHHHHHHHHhhccccc
Q psy8073 510 RADAQAKGV-------------------KCIDREVGEKLAQQY-GAIFMETSSKSGDNILDALIALSRHVYVFIPCVY 567 (593)
Q Consensus 510 ~~~~~~~~~-------------------~~v~~~~~~~l~~~~-~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~ 567 (593)
.+..-...| ..+......-+-.-| +...+.||+.+|.|.+++|.++...+.+....+.
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhh
Confidence 765211100 000011111111112 3458899999999999999999887776544433
No 293
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.08 E-value=8.6e-10 Score=107.21 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCC--CCccceeeEEEEEEECCeeEEEEEEecCCc-------hhh-hhhh---H
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKL--GSTLGVDFQMKTIRVDERNVALQLWDTAGQ-------ERF-RSMT---K 459 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~--~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~-------e~~-~~~~---~ 459 (593)
.+|+|+|.+|+||||++|.+++....... .......+......++| ..+.++||||- +.. ..+. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 48999999999999999999998543322 11222445555567777 77899999992 111 1111 1
Q ss_pred hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCC--CcEEEEEeCCCCCCccccccccccC---HHHHHHHHHHhC
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS--IPIVICANKVDLRADAQAKGVKCID---REVGEKLAQQYG 534 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piivV~NK~Dl~~~~~~~~~~~v~---~~~~~~l~~~~~ 534 (593)
....+.|++|+|+.++ +.+..+.. .+..+....+.. .-+|||.+..|-....... ..+. ......+.+..+
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~-~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~--~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDRE-VLELLQEIFGEEIWKHTIVVFTHADELEDDSLE--DYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHH-HHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHH--HHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCeEEEEEEecC-cchHHHHH-HHHHHHHHccHHHHhHhhHHhhhccccccccHH--HHHhccCchhHhHHhhhcC
Confidence 2346789999999998 44433322 223344333321 3578888888854431100 0111 123556667777
Q ss_pred CeEEEEcCC------CCCCHHHHHHHHHHHHHhhccccccCC
Q psy8073 535 AIFMETSSK------SGDNILDALIALSRHVYVFIPCVYLKD 570 (593)
Q Consensus 535 ~~~~e~Sa~------~g~gi~~l~~~L~~~l~~~~~~~~~~~ 570 (593)
-.|+..+.+ ....+.+|+..+-..+.++.-.+|...
T Consensus 155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~ 196 (212)
T PF04548_consen 155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNE 196 (212)
T ss_dssp TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-H
T ss_pred CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChH
Confidence 778877766 235688999999888888765555543
No 294
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.06 E-value=1.9e-09 Score=110.67 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=66.0
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVK 519 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~ 519 (593)
++.+.|+||+|...-. ......||++|+|.+...+...+.+.. .+.. +.-|+|+||+|+..... ..
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~---a~ 213 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTA---AR 213 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhH---HH
Confidence 4678999999965221 114567999999976444443333221 1111 23389999999875321 01
Q ss_pred ccCHHHHHHHHH------HhCCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 520 CIDREVGEKLAQ------QYGAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 520 ~v~~~~~~~l~~------~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
....+....+.. .+..+++.+||++|.||++++.+|.+.+..
T Consensus 214 ~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 214 RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 111111111211 123579999999999999999999987763
No 295
>KOG0458|consensus
Probab=99.03 E-value=7.6e-10 Score=116.85 Aligned_cols=160 Identities=20% Similarity=0.319 Sum_probs=108.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC--ccc--------------c-------------CCCCccceeeEEEEEEECCe
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE--VFL--------------N-------------KLGSTLGVDFQMKTIRVDER 439 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~--~~~--------------~-------------~~~~t~g~~~~~~~~~~~~~ 439 (593)
+...+.++++|+.++|||||+.+|+.. .+. + .....-|++.++++..++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 347799999999999999999988642 000 0 01112477788888888888
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh---cHH---HHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER---SFN---SVKNWVEAVEEVTENSIPIVICANKVDLRADA 513 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~ 513 (593)
...++|+|+||+..|..-+......||++|+|+|++... .|+ ..+.....+..+.- ..+||++||+|+.+ |
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi--~qlivaiNKmD~V~-W 330 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI--SQLIVAINKMDLVS-W 330 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc--ceEEEEeecccccC-c
Confidence 889999999999999888888888999999999998632 222 12222223333332 46899999999975 3
Q ss_pred ccccccccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHHHH
Q psy8073 514 QAKGVKCIDREVGEKLAQQYG-----AIFMETSSKSGDNILDA 551 (593)
Q Consensus 514 ~~~~~~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~~l 551 (593)
.......+......-+.+..| +.|++||+.+|.|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 322222222222222224444 35999999999997544
No 296
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.03 E-value=1.3e-09 Score=104.64 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=60.5
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcE--EEEEeCCCCCCccccccc
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPI--VICANKVDLRADAQAKGV 518 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi--ivV~NK~Dl~~~~~~~~~ 518 (593)
..+.+++|.|..-..... ..-+|.+|.|+|+++..+... .+.. .+.+ ++|+||+|+..... ..
T Consensus 92 ~D~iiIEt~G~~l~~~~~---~~l~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~~~--~~ 156 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS---PELADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPMVG--AD 156 (199)
T ss_pred CCEEEEECCCCCcccccc---hhhhCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhcccccc--cc
Confidence 345677888831111111 112688999999987655321 1111 2333 89999999974210 00
Q ss_pred cccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 519 KCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 519 ~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
.....+..+.+ ..+.++++|||++|.|+++++.+|.+.+
T Consensus 157 ~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 157 LGVMERDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 00111222222 2456899999999999999999998654
No 297
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.02 E-value=2.9e-09 Score=106.48 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=52.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccCCCCccce--eeEEEEEEECCe---------------eEEEEEEecCCchh----
Q psy8073 395 IVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV--DFQMKTIRVDER---------------NVALQLWDTAGQER---- 453 (593)
Q Consensus 395 I~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~--~~~~~~~~~~~~---------------~~~~~l~DTaG~e~---- 453 (593)
|+|||.||||||||+|+|++... .++..+++ +.....+.+.+. ...++|+||||.-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999998764 22222223 333334444332 12599999999421
Q ss_pred ---hhhhhHhhccCCCEEEEEEeCC
Q psy8073 454 ---FRSMTKNYFRRADGVMLLYDVT 475 (593)
Q Consensus 454 ---~~~~~~~~~~~ad~vi~v~D~~ 475 (593)
........++.||++|+|+|+.
T Consensus 79 ~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222334567899999999974
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.02 E-value=2.2e-09 Score=122.78 Aligned_cols=117 Identities=17% Similarity=0.237 Sum_probs=80.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--ccc-CCCCc-----------cceeeEE--EEE--EECCeeEEEEEEecCCc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--FLN-KLGST-----------LGVDFQM--KTI--RVDERNVALQLWDTAGQ 451 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--~~~-~~~~t-----------~g~~~~~--~~~--~~~~~~~~~~l~DTaG~ 451 (593)
.+.-+|+|+|+.++|||||+.+|+... ... ..+.+ -|.++.. ..+ ..++.++.+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 345589999999999999999997531 010 00100 0111111 111 23445688999999999
Q ss_pred hhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 452 e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
..|.......++.+|++|+|+|+..+...+...-|..... .++|+|+|+||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 9998778888999999999999988765554444543222 246889999999975
No 299
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.02 E-value=8.5e-10 Score=90.80 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=59.1
Q ss_pred HHHHHHHhHhCC-CCCCcccHHHHHHHHHc-CC--CCH-HHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDK-KGTGQIGPEEFRELCTG-FD--IQP-TDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D~-d~~G~I~~~el~~~l~~-l~--l~~-~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..++.+|+.||+ +++|+|+..||+.+|.. +| ++. .+++.|+..+|.|+||.|+|+||+.++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 468899999999 99999999999999997 87 666 889999999999999999999999998775
No 300
>PTZ00416 elongation factor 2; Provisional
Probab=99.01 E-value=1.6e-09 Score=125.26 Aligned_cols=117 Identities=18% Similarity=0.262 Sum_probs=80.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--ccc-CCCCc-----------cceeeE--EEEEEEC--------CeeEEEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--FLN-KLGST-----------LGVDFQ--MKTIRVD--------ERNVALQL 445 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--~~~-~~~~t-----------~g~~~~--~~~~~~~--------~~~~~~~l 445 (593)
.+..+|+|+|+.++|||||+++|+... ... ..+.+ -|.+.. ...+.++ +.++.+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 344599999999999999999998631 110 11111 011111 1122222 12577999
Q ss_pred EecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 446 ~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
+||||+..|.......++.+|++|+|+|+..+...+...-|.. ....++|+|+|+||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~----~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQ----ALQERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHH----HHHcCCCEEEEEEChhhh
Confidence 9999999997778888999999999999998766555443432 223358999999999986
No 301
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.00 E-value=2.8e-09 Score=109.39 Aligned_cols=161 Identities=18% Similarity=0.268 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--cccc------------CCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKE--VFLN------------KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMT 458 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~--~~~~------------~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~ 458 (593)
-+|+|+-+..-|||||+..|+.. .|.. .....-|.++..+...+..+++.+.|+||||+..|..-.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 47999999999999999999864 2221 223345778888887788888999999999999998888
Q ss_pred HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH------HH
Q psy8073 459 KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA------QQ 532 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~------~~ 532 (593)
...+.-.|++++++|+....-.+. +. .+++....+.+-|||+||+|...+.. ..+..+...-|. .+
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQT-rF---VlkKAl~~gL~PIVVvNKiDrp~Arp----~~Vvd~vfDLf~~L~A~deQ 157 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQT-RF---VLKKALALGLKPIVVINKIDRPDARP----DEVVDEVFDLFVELGATDEQ 157 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCch-hh---hHHHHHHcCCCcEEEEeCCCCCCCCH----HHHHHHHHHHHHHhCCChhh
Confidence 888999999999999987543332 11 22333344567789999999876522 112222222222 23
Q ss_pred hCCeEEEEcCCCCC----------CHHHHHHHHHHHHHh
Q psy8073 533 YGAIFMETSSKSGD----------NILDALIALSRHVYV 561 (593)
Q Consensus 533 ~~~~~~e~Sa~~g~----------gi~~l~~~L~~~l~~ 561 (593)
+..+++..||+.|. ++.-||+.|...+..
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 45678999999984 577788887777653
No 302
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.00 E-value=1.7e-09 Score=125.16 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=82.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCcc---ccCCCCc-----------cceeeEE--EEEEE--------------CC
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVF---LNKLGST-----------LGVDFQM--KTIRV--------------DE 438 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~---~~~~~~t-----------~g~~~~~--~~~~~--------------~~ 438 (593)
+.+..+|+|+|+.++|||||+.+|+...- ....+.+ -|.++.. ..+.+ .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 44556999999999999999999975420 0000111 1112221 12222 12
Q ss_pred eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
.++.+.|+||||+..|.......++.+|++|+|+|+..+.......-|...+ ..++|+|+++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH----HCCCCEEEEEECCccc
Confidence 3578899999999999777888889999999999999887666555454332 3458999999999986
No 303
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.98 E-value=1.8e-09 Score=84.12 Aligned_cols=60 Identities=37% Similarity=0.645 Sum_probs=52.7
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcCCCC--HHH----HHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ--PTD----SDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~--~~e----~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
+++++|..||+|++|+|+..||..++..++.+ +.. ++.+|..+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 57899999999999999999999999988743 433 4467999999999999999999875
No 304
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.98 E-value=4.8e-09 Score=104.44 Aligned_cols=155 Identities=20% Similarity=0.223 Sum_probs=102.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcc-------------ccCCCC------------------ccceeeEEEEEEECC
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVF-------------LNKLGS------------------TLGVDFQMKTIRVDE 438 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~-------------~~~~~~------------------t~g~~~~~~~~~~~~ 438 (593)
...++++.+|...=||||||-+|+...- +...++ .-|.++++.-..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4568999999999999999999976410 000011 235566655555555
Q ss_pred eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccc
Q psy8073 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGV 518 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~ 518 (593)
....|.+.||||++.|-........-||++|+++|+.....-+.-+. ..|...-+- ..++|.+||+||.+-... .
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH--s~I~sLLGI-rhvvvAVNKmDLvdy~e~--~ 158 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH--SFIASLLGI-RHVVVAVNKMDLVDYSEE--V 158 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHH--HHHHHHhCC-cEEEEEEeeecccccCHH--H
Confidence 56789999999999995545556678999999999975543333222 122222221 347788899999874221 1
Q ss_pred cccCHHHHHHHHHHhCC---eEEEEcCCCCCCHH
Q psy8073 519 KCIDREVGEKLAQQYGA---IFMETSSKSGDNIL 549 (593)
Q Consensus 519 ~~v~~~~~~~l~~~~~~---~~~e~Sa~~g~gi~ 549 (593)
-.-...+...|+..++. .++++||..|.||.
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 11123344557777765 48999999999874
No 305
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.97 E-value=2.7e-09 Score=89.92 Aligned_cols=66 Identities=20% Similarity=0.340 Sum_probs=62.0
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~ 69 (593)
..++.+|..||++++|+|+..++..+|+.+|++..++..||..+|.+++|.|+|++|+.++.....
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999887643
No 306
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.96 E-value=3.7e-09 Score=102.40 Aligned_cols=149 Identities=18% Similarity=0.142 Sum_probs=81.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccc--------cCCC----C----ccceeeEEEEEEECC----------------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFL--------NKLG----S----TLGVDFQMKTIRVDE---------------- 438 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~--------~~~~----~----t~g~~~~~~~~~~~~---------------- 438 (593)
..+.|+|+|++|+|||||+++++..... +... + ..|.+ ...+ .+|
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l-~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQI-NTGKECHLDAHMVAHALED 97 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEE-cCCCcccCChHHHHHHHHH
Confidence 3578899999999999999998754100 0000 0 00110 0111 011
Q ss_pred ---eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc
Q psy8073 439 ---RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQA 515 (593)
Q Consensus 439 ---~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~ 515 (593)
....+.|++|.|.-.. ...+.-..+..+.|+|+++...... . .... ...|.++|+||+|+.....
T Consensus 98 ~~~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~-~----~~~~---~~~a~iiv~NK~Dl~~~~~- 165 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL-K----YPGM---FKEADLIVINKADLAEAVG- 165 (207)
T ss_pred hccCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh-h----hHhH---HhhCCEEEEEHHHccccch-
Confidence 0124566677661100 0111123455667777765432111 0 1111 1267899999999964310
Q ss_pred ccccccCHHHHHHHHHHh--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 516 KGVKCIDREVGEKLAQQY--GAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 516 ~~~~~v~~~~~~~l~~~~--~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
..........+.. .++++++||++|.|+++++.++.+..
T Consensus 166 -----~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 166 -----FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred -----hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 1111122222232 37899999999999999999998753
No 307
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.95 E-value=1.3e-09 Score=107.41 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=58.4
Q ss_pred EEEEEecCCchhhhhhhHh------hc--cCCCEEEEEEeCCChhcHHH-HHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 442 ALQLWDTAGQERFRSMTKN------YF--RRADGVMLLYDVTNERSFNS-VKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 442 ~~~l~DTaG~e~~~~~~~~------~~--~~ad~vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
.+.|+|||||.++-..+.. .+ ...=++++++|+....+... +..++..+......+.|+|.|.||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 5889999998765322221 12 34558899999864433222 222333333333345899999999999763
Q ss_pred ccccccc------cc-------CHHHHHHHHHH---hC-C-eEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 513 AQAKGVK------CI-------DREVGEKLAQQ---YG-A-IFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 513 ~~~~~~~------~v-------~~~~~~~l~~~---~~-~-~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
....... .. .......++.. ++ . .++++|+.++.|+.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1000000 00 11222233332 23 3 699999999999999999876654
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.94 E-value=7.4e-09 Score=96.61 Aligned_cols=62 Identities=21% Similarity=0.358 Sum_probs=44.8
Q ss_pred EEEEecCCchh----hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCC
Q psy8073 443 LQLWDTAGQER----FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507 (593)
Q Consensus 443 ~~l~DTaG~e~----~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~ 507 (593)
+.|+||||... ...++..++..+|++|+|.+++...+-.....|..... .....+|+|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~---~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD---PDKSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT---TTCSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc---CCCCeEEEEEcCC
Confidence 78999999532 23678888999999999999998766555554544443 3334589999984
No 309
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.5e-09 Score=103.33 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=110.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc---cccC----------CCCcc-----cee---eEEEEEEEC------CeeEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV---FLNK----------LGSTL-----GVD---FQMKTIRVD------ERNVA 442 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~---~~~~----------~~~t~-----g~~---~~~~~~~~~------~~~~~ 442 (593)
...++|.++|+..-|||||..+|.+-. ++.. |..+. ... .+...-... .--..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 567999999999999999999997641 0000 00000 000 000000011 11245
Q ss_pred EEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccC
Q psy8073 443 LQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCID 522 (593)
Q Consensus 443 ~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~ 522 (593)
+.|+|.||+|-......+-..-.|++|+|++++.+...-..++.+..+....- ..+|+|-||+||..... ..-.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi--k~iiIvQNKIDlV~~E~----AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI--KNIIIVQNKIDLVSRER----ALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc--ceEEEEecccceecHHH----HHHH
Confidence 88999999998877666667778999999999876554444444445554443 46899999999976421 1123
Q ss_pred HHHHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 523 REVGEKLAQQ---YGAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 523 ~~~~~~l~~~---~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
++++++|.+. -+++++++||..+.||+.++++|...+..
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 4455555543 35789999999999999999999888764
No 310
>KOG0028|consensus
Probab=98.92 E-value=1.2e-08 Score=90.13 Aligned_cols=135 Identities=17% Similarity=0.259 Sum_probs=102.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCC--HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ--PTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~--~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..+++++|..||.+++|+|+..+|..+++++|+. .+++..|+...|.++.|.|+|++|...|...+...++......+
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 3679999999999999999999999999999976 44667999999999999999999999998887655544333333
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
+...+... .+......|+.++..||+.. +.+++..++... +.+. ..-.+-|+|++.+
T Consensus 112 frl~D~D~---~Gkis~~~lkrvakeLgenl-------tD~El~eMIeEA--d~d~-dgevneeEF~~im 168 (172)
T KOG0028|consen 112 FRLFDDDK---TGKISQRNLKRVAKELGENL-------TDEELMEMIEEA--DRDG-DGEVNEEEFIRIM 168 (172)
T ss_pred HHcccccC---CCCcCHHHHHHHHHHhCccc-------cHHHHHHHHHHh--cccc-cccccHHHHHHHH
Confidence 33332221 22222345999999999987 999999999999 4443 3345667787654
No 311
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.92 E-value=2.8e-09 Score=96.50 Aligned_cols=65 Identities=26% Similarity=0.522 Sum_probs=61.1
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
++++++.+|+.||+|++|+|+..+|..++..+| ++.++++.++..+|.|++|+|+|++|...+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 478999999999999999999999999999888 88999999999999999999999999988743
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.91 E-value=5.3e-09 Score=107.15 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=64.5
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVK 519 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~ 519 (593)
++.+.|+||+|.-.. ....+..+|.++++.+.... ..+......+ ..+|.++|+||+|+...... .
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~---~ 191 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNV---T 191 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHH---H
Confidence 467899999995321 12346678999888544322 3333222222 23788999999998753110 0
Q ss_pred ccCHH---HHHHHHH---HhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 520 CIDRE---VGEKLAQ---QYGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 520 ~v~~~---~~~~l~~---~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
.+... ....+.. .+..++++|||++|.|+++++.+|...+.
T Consensus 192 ~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 192 IARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00000 0011111 12345899999999999999999988754
No 313
>KOG0461|consensus
Probab=98.91 E-value=1.3e-08 Score=100.68 Aligned_cols=165 Identities=17% Similarity=0.260 Sum_probs=103.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC----ccccCC-CCccceeeEE--EEEEE-------CCeeEEEEEEecCCchhhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE----VFLNKL-GSTLGVDFQM--KTIRV-------DERNVALQLWDTAGQERFR 455 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~----~~~~~~-~~t~g~~~~~--~~~~~-------~~~~~~~~l~DTaG~e~~~ 455 (593)
+..++|.|+|+..+|||+|.++|..- .|...+ +.+-|.+.+. ..+.+ .+....+.|+|+||+....
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 34589999999999999999999643 222221 1222222221 11111 3556788999999998775
Q ss_pred hhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh--
Q psy8073 456 SMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY-- 533 (593)
Q Consensus 456 ~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~-- 533 (593)
........--|..|+|+|+.....-+.+.-+ .|..... ...+||+||+|+....... .-......++.+..
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~c--~klvvvinkid~lpE~qr~---ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELLC--KKLVVVINKIDVLPENQRA---SKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhhc--cceEEEEeccccccchhhh---hHHHHHHHHHHHHHHh
Confidence 5555555667899999999876544444321 1222221 4578899999976542211 11222333333322
Q ss_pred -----CCeEEEEcCCCC----CCHHHHHHHHHHHHHh
Q psy8073 534 -----GAIFMETSSKSG----DNILDALIALSRHVYV 561 (593)
Q Consensus 534 -----~~~~~e~Sa~~g----~gi~~l~~~L~~~l~~ 561 (593)
+.+++++||+.| .+|.++.+.|...+..
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 368999999999 7888888888777763
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.9e-08 Score=101.00 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC----------------CeeEEEEEEecCCc----
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD----------------ERNVALQLWDTAGQ---- 451 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~----------------~~~~~~~l~DTaG~---- 451 (593)
+++|.|||.||||||||+|+++........-|+.+.+.....+.+. -...++.|+|.||.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 5789999999999999999999886321222222222222222211 11367899999993
Q ss_pred ---hhhhhhhHhhccCCCEEEEEEeCC
Q psy8073 452 ---ERFRSMTKNYFRRADGVMLLYDVT 475 (593)
Q Consensus 452 ---e~~~~~~~~~~~~ad~vi~v~D~~ 475 (593)
+-.......-++.+|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223344455678999999999987
No 315
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.88 E-value=2.7e-08 Score=107.82 Aligned_cols=121 Identities=19% Similarity=0.202 Sum_probs=76.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCcccee-eEEEEEEECCeeEEEEEEecCCchhh----------hhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVD-FQMKTIRVDERNVALQLWDTAGQERF----------RSM 457 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~-~~~~~~~~~~~~~~~~l~DTaG~e~~----------~~~ 457 (593)
....++|+|+|.+||||||++|.|++...........+++ .......+++ ..+.++||||.... ...
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence 4556899999999999999999999975332222112222 2223334455 67999999994321 111
Q ss_pred hHhhcc--CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCC--CcEEEEEeCCCCCC
Q psy8073 458 TKNYFR--RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS--IPIVICANKVDLRA 511 (593)
Q Consensus 458 ~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piivV~NK~Dl~~ 511 (593)
...++. .+|+||+|..++.......-..++..|....+.. .-+|||.|+.|...
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 222333 5899999998864333222234666666665533 35899999999864
No 316
>KOG1486|consensus
Probab=98.87 E-value=4.5e-08 Score=93.06 Aligned_cols=182 Identities=17% Similarity=0.139 Sum_probs=114.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh-------hhhhHhhccC
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF-------RSMTKNYFRR 464 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~-------~~~~~~~~~~ 464 (593)
..+|+++|-|.||||||+..++........-.+...++.+..+.++| ..+++.|.||+-.- .....+..+-
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 36999999999999999999987632221112222566666677777 67899999995221 1123345678
Q ss_pred CCEEEEEEeCCChhcHHH-HHHHHHH-----------------------------------------HHHH---------
Q psy8073 465 ADGVMLLYDVTNERSFNS-VKNWVEA-----------------------------------------VEEV--------- 493 (593)
Q Consensus 465 ad~vi~v~D~~~~~s~~~-~~~~~~~-----------------------------------------i~~~--------- 493 (593)
||+|++|.|++....... +..-+.. +..+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 999999999986432211 1100111 0100
Q ss_pred ---------------cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 494 ---------------TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 494 ---------------~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
...-+|.+.|.||+|. ++-++...++...+..+ +||...-|++.+++.|...
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----------vs~eevdrlAr~PnsvV--iSC~m~lnld~lle~iWe~ 286 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----------VSIEEVDRLARQPNSVV--ISCNMKLNLDRLLERIWEE 286 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccce-----------ecHHHHHHHhcCCCcEE--EEeccccCHHHHHHHHHHH
Confidence 0012467888899986 45567777887776533 7888889999999999887
Q ss_pred HHhhccccc-cCCCCCCCcccccccccchhh
Q psy8073 559 VYVFIPCVY-LKDLPYTSVLIFIPFQKQISD 588 (593)
Q Consensus 559 l~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~ 588 (593)
+.-...... +...|....++++.-+.++-+
T Consensus 287 l~L~rvYtKk~g~~Pdfdd~~vlr~g~tve~ 317 (364)
T KOG1486|consen 287 LNLVRVYTKKKGQRPDFDDPLVLRKGSTVED 317 (364)
T ss_pred hceEEEEecCCCCCCCCCCceEEeCCCcHHH
Confidence 763222222 223366666766666655543
No 317
>KOG3886|consensus
Probab=98.87 E-value=2.3e-09 Score=100.66 Aligned_cols=116 Identities=25% Similarity=0.434 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc---cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh-----hhHhhccC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL---NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS-----MTKNYFRR 464 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~---~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~-----~~~~~~~~ 464 (593)
-||+++|.+|+||||+=-.++.+-.. .-.++| .|+....+.+-| .+.+.+||.+|++.|.. .....+++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~t--idveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGAT--IDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCc--ceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 58999999999999987766644211 112333 333333333333 36799999999986632 34457899
Q ss_pred CCEEEEEEeCCChhcHHHHHHHHHHHH---HHcCCCCcEEEEEeCCCCCCc
Q psy8073 465 ADGVMLLYDVTNERSFNSVKNWVEAVE---EVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 465 ad~vi~v~D~~~~~s~~~~~~~~~~i~---~~~~~~~piivV~NK~Dl~~~ 512 (593)
.+++|+|||++..+-..++..+-..+. ...+ ...+++...|+||...
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQE 131 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhccc
Confidence 999999999987755445544444333 3333 3678899999999765
No 318
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.86 E-value=7.1e-09 Score=80.86 Aligned_cols=62 Identities=26% Similarity=0.421 Sum_probs=58.4
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 6 l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
++.+|..+|++++|+|+.+++..+++.+|++..++..+|..+|.+++|.|+|++|+.++..+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 46899999999999999999999999999988999999999999999999999999998765
No 319
>KOG0027|consensus
Probab=98.84 E-value=7.4e-09 Score=95.04 Aligned_cols=65 Identities=31% Similarity=0.579 Sum_probs=59.7
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+.++++++|+.||+|++|+|+..+|+.+|..+| ++..+++.++..+|.|+||.|+|++|+.+|..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 456999999999999999999999999999887 66778899999999999999999999998853
No 320
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.84 E-value=1.2e-08 Score=84.17 Aligned_cols=64 Identities=22% Similarity=0.458 Sum_probs=57.4
Q ss_pred HHHHHHHhHhC-CCCCC-cccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCD-KKGTG-QIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..++++|+.|| ++|+| +|+..+|+.+|+. +| .++.+++.++..+|.|++|.|+|++|+.++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 36899999998 89999 5999999999998 77 456778999999999999999999999888664
No 321
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.83 E-value=3.8e-08 Score=96.60 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=46.7
Q ss_pred EEEEEEecCCchh-------------hhhhhHhhcc-CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeC
Q psy8073 441 VALQLWDTAGQER-------------FRSMTKNYFR-RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506 (593)
Q Consensus 441 ~~~~l~DTaG~e~-------------~~~~~~~~~~-~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK 506 (593)
..+.|+||||... ...+...|++ .++++++|+|++....-.+.. ..+....+.+.|+|+|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l---~ia~~ld~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL---KLAKEVDPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH---HHHHHHHHcCCcEEEEEEC
Confidence 4588999999531 2345667888 456999999987643322322 2334444556899999999
Q ss_pred CCCCCc
Q psy8073 507 VDLRAD 512 (593)
Q Consensus 507 ~Dl~~~ 512 (593)
+|....
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998753
No 322
>KOG2486|consensus
Probab=98.81 E-value=8.4e-09 Score=99.82 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=103.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCC-ccceeeEEEEEEECCeeEEEEEEecCC----------chhhhhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGS-TLGVDFQMKTIRVDERNVALQLWDTAG----------QERFRSM 457 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~g~~~~~~~~~~~~~~~~~~l~DTaG----------~e~~~~~ 457 (593)
..+.+.++++|.+|||||||||.++........+. +.|.+-....+.+.. .+.++|.|| ...+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 45678999999999999999999988754444444 666665555555553 688999999 2455667
Q ss_pred hHhhccCCC---EEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHH--HHHHHH-
Q psy8073 458 TKNYFRRAD---GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREV--GEKLAQ- 531 (593)
Q Consensus 458 ~~~~~~~ad---~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~--~~~l~~- 531 (593)
+..|+.+-+ -+++++|++-+..--+.. +|..+...++|+.+|.||||..........+...... ...+..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~----~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNP----EIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChH----HHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 777775544 455667776543322222 3444556679999999999986442211111111100 001111
Q ss_pred --HhCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 532 --QYGAIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 532 --~~~~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
....+.+.+|+.++.|++.++.++.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhh
Confidence 111245679999999999998887664
No 323
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.3e-08 Score=101.95 Aligned_cols=160 Identities=16% Similarity=0.104 Sum_probs=108.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
-|+.+|+-.-|||||+.++.+..-. ..-...-|++.+..-...+.....+.|+|.||+++|.......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4788999999999999999886411 111123455555555555555568999999999999777777778999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
|+++....+.... +..+....- ...++|+||+|..+... ......+....+. -.+++++.+|+++|.||+++.
T Consensus 82 ~~deGl~~qtgEh-L~iLdllgi--~~giivltk~D~~d~~r---~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 82 AADEGLMAQTGEH-LLILDLLGI--KNGIIVLTKADRVDEAR---IEQKIKQILADLS-LANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred eCccCcchhhHHH-HHHHHhcCC--CceEEEEeccccccHHH---HHHHHHHHHhhcc-cccccccccccccCCCHHHHH
Confidence 9976554443332 112332221 34599999999986521 1111222222222 223568999999999999999
Q ss_pred HHHHHHHH
Q psy8073 553 IALSRHVY 560 (593)
Q Consensus 553 ~~L~~~l~ 560 (593)
+.|.....
T Consensus 155 ~~l~~L~~ 162 (447)
T COG3276 155 NELIDLLE 162 (447)
T ss_pred HHHHHhhh
Confidence 99998873
No 324
>PTZ00183 centrin; Provisional
Probab=98.79 E-value=5.9e-08 Score=89.45 Aligned_cols=137 Identities=18% Similarity=0.267 Sum_probs=97.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..++..+|..+|.+++|+|+..++..++..+| ++...+..+|..+|.+++|.|+|.+|..++................
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 35788999999999999999999999999777 4566788999999999999999999999876643221111111222
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
+...+... .+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.+
T Consensus 96 F~~~D~~~---~G~i~~~e~~~~l~~~~~~l-------~~~~~~~~~~~~--d~~-~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 96 FRLFDDDK---TGKISLKNLKRVAKELGETI-------TDEELQEMIDEA--DRN-GDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHhCCCC---CCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHhc
Confidence 22222222 11223345888888887655 788899999999 433 3456789988776543
No 325
>KOG1707|consensus
Probab=98.79 E-value=7.7e-08 Score=101.87 Aligned_cols=167 Identities=20% Similarity=0.267 Sum_probs=115.9
Q ss_pred CCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhc
Q psy8073 383 LEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYF 462 (593)
Q Consensus 383 ~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~ 462 (593)
.......++.+.+.++|+.|+|||.|++.|+++.+......+....+....+.+.|....+.|-|.+-. ....+...-
T Consensus 416 ~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke- 493 (625)
T KOG1707|consen 416 RKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE- 493 (625)
T ss_pred hccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-
Confidence 333445677899999999999999999999998776655555555666666666677777888887643 222222222
Q ss_pred cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe-EEEEc
Q psy8073 463 RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETS 541 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~-~~e~S 541 (593)
..||++.++||++++.+|..+...+..-... ..+|+++|+.|+|+...... ..+.. ..++..++++ -+.+|
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~---~~iqp---de~~~~~~i~~P~~~S 565 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQR---YSIQP---DEFCRQLGLPPPIHIS 565 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhc---cCCCh---HHHHHhcCCCCCeeec
Confidence 7899999999999999998887655433333 45999999999999654211 11222 4567777763 34567
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRHVY 560 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~ 560 (593)
.++... .++|..|+....
T Consensus 566 ~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 566 SKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred cCCCCC-chHHHHHHHhhh
Confidence 774223 788888776554
No 326
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.78 E-value=3e-08 Score=102.50 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=80.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCc----cccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhH-----hh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEV----FLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTK-----NY 461 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~----~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~-----~~ 461 (593)
..++|+|+|.+|+|||||||+|.+-. -.+.++. +.++.....+..... -.+.|||.||...-..... .-
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 34899999999999999999997531 1111111 112222233322221 1489999999543221222 23
Q ss_pred ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC-CccccccccccCHHH-HHHH---H----HH
Q psy8073 462 FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR-ADAQAKGVKCIDREV-GEKL---A----QQ 532 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~-~~~~~~~~~~v~~~~-~~~l---~----~~ 532 (593)
+..-|.+|++.+-. .+..++. ........++|+++|-+|+|.. ........+....+. .+.+ + ..
T Consensus 112 ~~~yD~fiii~s~r--f~~ndv~----La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 112 FYRYDFFIIISSER--FTENDVQ----LAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GGG-SEEEEEESSS----HHHHH----HHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred ccccCEEEEEeCCC--CchhhHH----HHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 56789988877653 2222222 2233334458999999999951 111001111222221 1111 1 11
Q ss_pred hCC---eEEEEcCCCC--CCHHHHHHHHHHHHHhhcccc
Q psy8073 533 YGA---IFMETSSKSG--DNILDALIALSRHVYVFIPCV 566 (593)
Q Consensus 533 ~~~---~~~e~Sa~~g--~gi~~l~~~L~~~l~~~~~~~ 566 (593)
.|+ .+|-+|+.+- .+...|.+.|.+.+..+....
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence 232 4788888774 568888888888777654443
No 327
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.75 E-value=9.1e-08 Score=98.70 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=52.7
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCCh----------hcHHHHHHHHHHH-HHHcCCCCcEEEEEeCCC
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNE----------RSFNSVKNWVEAV-EEVTENSIPIVICANKVD 508 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i-~~~~~~~~piivV~NK~D 508 (593)
++.+.+||++|+...+..|..++.++++||+|+|+++. ..+......+..+ ....-.++|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 47899999999999999999999999999999999873 1222222222222 222225689999999999
Q ss_pred CC
Q psy8073 509 LR 510 (593)
Q Consensus 509 l~ 510 (593)
+-
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 64
No 328
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=5.5e-08 Score=94.61 Aligned_cols=189 Identities=13% Similarity=0.143 Sum_probs=114.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC----------ccccCC----CCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE----------VFLNKL----GSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~----------~~~~~~----~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
....++|..+|+.+-|||||.-+++.- .|..+. ...-|+++....+.+......+-.+|+||+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 456789999999999999999887642 111111 123466666666666666677889999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
..........+|+.|+|+.+++..-.+.....+ ... .-++| ++++.||+|+.+... +-..-..+.+.+...|
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-lar---qvGvp~ivvflnK~Dmvdd~e---llelVemEvreLLs~y 161 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LAR---QVGVPYIVVFLNKVDMVDDEE---LLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhh---hcCCcEEEEEEecccccCcHH---HHHHHHHHHHHHHHHc
Confidence 665666667899999999999865444433211 122 22355 667789999987532 1223344556666677
Q ss_pred CC-----eEEEEcCCCC-CCHHHHHHHHHHHHHhhccccccCCCCCCCcccccccccc
Q psy8073 534 GA-----IFMETSSKSG-DNILDALIALSRHVYVFIPCVYLKDLPYTSVLIFIPFQKQ 585 (593)
Q Consensus 534 ~~-----~~~e~Sa~~g-~gi~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 585 (593)
+. +++--||... .|-......|...+ .....+.+...+....+..+|..+-
T Consensus 162 ~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm-~avd~yip~Per~~dkPflmpvEdv 218 (394)
T COG0050 162 GFPGDDTPIIRGSALKALEGDAKWEAKIEELM-DAVDSYIPTPERDIDKPFLMPVEDV 218 (394)
T ss_pred CCCCCCcceeechhhhhhcCCcchHHHHHHHH-HHHHhcCCCCCCcccccccccceee
Confidence 64 4666665542 33222222222222 2233333444445556666776543
No 329
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.73 E-value=1.3e-07 Score=95.38 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=68.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCC----------CCccceeeEEEEEEECCeeEEEEEEecCCch---------
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKL----------GSTLGVDFQMKTIRVDERNVALQLWDTAGQE--------- 452 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~----------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e--------- 452 (593)
.++|+|||.+|+|||||||.|++....... ..+.........+.-++..+.+.|+||||-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 479999999999999999999987432221 1222223333344446777899999999911
Q ss_pred ---------hhhhhhH-------hh--ccCCCEEEEEEeCCC-hhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 453 ---------RFRSMTK-------NY--FRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 453 ---------~~~~~~~-------~~--~~~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
.|..... .. =...|++|++++.+. ...-.++. .++.+... +++|-|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~----~mk~Ls~~-vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE----FMKRLSKR-VNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH----HHHHHTTT-SEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH----HHHHhccc-ccEEeEEecccccCH
Confidence 1110000 01 135789999999864 23333443 34444443 899999999998653
No 330
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.72 E-value=4.6e-08 Score=81.68 Aligned_cols=65 Identities=25% Similarity=0.409 Sum_probs=55.9
Q ss_pred HHHHHHHhHhC-CCCCC-cccHHHHHHHHHc-CC------CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 4 LQLEELFKTCD-KKGTG-QIGPEEFRELCTG-FD------IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 4 ~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-l~------l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..++++|+.|| +||+| +|+..||+.++.. ++ .++.+++.|+..+|.|++|.|+|+||+.++..+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 35788899999 79999 5999999999974 22 3567899999999999999999999999987753
No 331
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.71 E-value=3.8e-08 Score=82.21 Aligned_cols=65 Identities=23% Similarity=0.444 Sum_probs=57.2
Q ss_pred HHHHHHHHhHhC-CCCCCc-ccHHHHHHHHHc-CC------CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCD-KKGTGQ-IGPEEFRELCTG-FD------IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~G~-I~~~el~~~l~~-l~------l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
.+.++++|+.|| ++++|+ |+..+|+.+|+. +| .+..+++.||..+|.|++|.|+|++|+.++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 367999999997 999995 999999999984 54 256788899999999999999999999988765
No 332
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.71 E-value=6.1e-08 Score=82.07 Aligned_cols=66 Identities=23% Similarity=0.381 Sum_probs=60.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~ 69 (593)
...|..+|...|. ++|+|+..+...+|...|++.+.+..||..+|.|++|+++++||+.+|+.+..
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 5689999999985 58999999999999999999999999999999999999999999999998754
No 333
>KOG0468|consensus
Probab=98.69 E-value=8.3e-08 Score=102.25 Aligned_cols=118 Identities=25% Similarity=0.395 Sum_probs=86.7
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccC---------CCCc------ccee--eEEEEEE---ECCeeEEEEEEe
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK---------LGST------LGVD--FQMKTIR---VDERNVALQLWD 447 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~---------~~~t------~g~~--~~~~~~~---~~~~~~~~~l~D 447 (593)
.+....+|+++|+-..|||+|+..|.....+.. +..+ -|.. ....++. ..+..+.++|.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 345667999999999999999999976532111 1111 1111 1122222 256678899999
Q ss_pred cCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCC
Q psy8073 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509 (593)
Q Consensus 448 TaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl 509 (593)
|||+..|..-+...++.+|++++|+|+.....+..-+ .|+.......|+++|+||+|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr----~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER----IIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH----HHHHHHhccCcEEEEEehhHH
Confidence 9999999888888899999999999999888876554 455555567999999999995
No 334
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.7e-07 Score=104.80 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=90.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC--cc--ccCCC------------CccceeeEEEEEEECCe-eEEEEEEecCCc
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE--VF--LNKLG------------STLGVDFQMKTIRVDER-NVALQLWDTAGQ 451 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~--~~--~~~~~------------~t~g~~~~~~~~~~~~~-~~~~~l~DTaG~ 451 (593)
+.+.-+|.|+|+..+|||||..+++.. .. .+.+. ..-|.+......++... .+.+.|+||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 445679999999999999999998643 10 11111 01355555555555555 489999999999
Q ss_pred hhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 452 e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
-+|..-....++-+|++|+|+|+......+.-.-|.+.. ..++|.|+++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECcccccc
Confidence 999888888999999999999999887766666565544 446899999999997654
No 335
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.9e-07 Score=95.79 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--C------ccccCC------------CCccceeeEEEEEEECCeeEEEEEEecCCch
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSK--E------VFLNKL------------GSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~--~------~~~~~~------------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e 452 (593)
-..+|+-+|.+|||||-..|+. + .+.+.- ...-|+.+....+.++..+..+.|.||||++
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 4678999999999999998753 1 111100 0113444555555566666899999999999
Q ss_pred hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 453 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
.|..-+...+..+|.+|.|+|+..+..-+... .+.-+..+++||+-++||.|...
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K----LfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK----LFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHHH----HHHHHhhcCCceEEEeecccccc
Confidence 99888888899999999999998776544433 33334457799999999999754
No 336
>KOG0705|consensus
Probab=98.66 E-value=7.8e-08 Score=100.48 Aligned_cols=163 Identities=17% Similarity=0.320 Sum_probs=122.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
.-..+|+.|||..++|||+|+++++.+.|....++.- ....+.+.+++....+.+.|-+|.- ...|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 3456899999999999999999999998777666663 4556777788888999999998832 34567889999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH-HHhCCeEEEEcCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA-QQYGAIFMETSSKSGD 546 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~-~~~~~~~~e~Sa~~g~ 546 (593)
||||.+.+..+|+.+..+...+.... ...+|+++|+++.-.... ..+.+....+..++ +-..|.+|+++|.+|.
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~----~~rv~~da~~r~l~~~~krcsy~et~atyGl 175 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAK----RPRVITDDRARQLSAQMKRCSYYETCATYGL 175 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcc----cccccchHHHHHHHHhcCccceeecchhhhh
Confidence 99999999999998876544443222 345888889887543222 22445555555544 4456789999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy8073 547 NILDALIALSRHVYVF 562 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~ 562 (593)
++..+|..+...+...
T Consensus 176 nv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 176 NVERVFQEVAQKIVQL 191 (749)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999888766543
No 337
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.65 E-value=8.6e-08 Score=80.35 Aligned_cols=65 Identities=26% Similarity=0.414 Sum_probs=56.4
Q ss_pred HHHHHHHHhHhCC-CC-CCcccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDK-KG-TGQIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~-d~-~G~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
...++++|..||. |+ +|+|+..||+.+|+. +| .+..+++.+|..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3578999999997 97 699999999999985 33 466788899999999999999999999888653
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.65 E-value=2.3e-07 Score=93.46 Aligned_cols=172 Identities=19% Similarity=0.199 Sum_probs=101.4
Q ss_pred CCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCc--------------cceeeEEEEEEECCe-----------
Q psy8073 385 PTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGST--------------LGVDFQMKTIRVDER----------- 439 (593)
Q Consensus 385 ~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t--------------~g~~~~~~~~~~~~~----------- 439 (593)
..+..+..+.|+++|+.+.|||||+-.|+.+......+.| ...+..-..+-+++.
T Consensus 110 ~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~ 189 (527)
T COG5258 110 KTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDE 189 (527)
T ss_pred cccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccH
Confidence 3445778899999999999999999988765322211111 111222222222221
Q ss_pred ----------eEEEEEEecCCchhhhh--hhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCC
Q psy8073 440 ----------NVALQLWDTAGQERFRS--MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507 (593)
Q Consensus 440 ----------~~~~~l~DTaG~e~~~~--~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~ 507 (593)
+..+.|+||.|+|.|-. ++...-.+.|..++++.+++..+.-.-. .+ ........|+|+|.+|+
T Consensus 190 aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkE-HL---gi~~a~~lPviVvvTK~ 265 (527)
T COG5258 190 AEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKE-HL---GIALAMELPVIVVVTKI 265 (527)
T ss_pred HHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhH-hh---hhhhhhcCCEEEEEEec
Confidence 23478999999999933 3334446899999999999876643322 22 22223358999999999
Q ss_pred CCCCcccccccc-cc---------------CHHHH--HHHHHHhC---CeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 508 DLRADAQAKGVK-CI---------------DREVG--EKLAQQYG---AIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 508 Dl~~~~~~~~~~-~v---------------~~~~~--~~l~~~~~---~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
|+.+........ .+ ..... ...+...+ +|+|.+|+.||+|++-|.+ +...+.+
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp~ 339 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLPK 339 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCCc
Confidence 997652211000 00 00000 11122222 4799999999999955444 4444443
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.64 E-value=5.8e-08 Score=90.90 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=48.1
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
....++|+++|.||||||||+|+|++.. ...+++.+|++.....+.++. .+.|+||||.
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~-~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSR-ACNVGATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcc-cceecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 3556899999999999999999999876 345677788888777777653 5899999994
No 340
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.62 E-value=1.2e-07 Score=87.34 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=65.1
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
|+.+.+.++++||++|+|+|++++...... .+...+ ...+.|+++|+||+|+.... .. .....+....
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~---~~~~~p~iiv~NK~Dl~~~~------~~--~~~~~~~~~~ 69 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYV---LELGKKLLIVLNKADLVPKE------VL--EKWKSIKESE 69 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHH---HhCCCcEEEEEEhHHhCCHH------HH--HHHHHHHHhC
Confidence 356677888899999999999876543321 122222 22358999999999985321 01 1111233345
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 534 GAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 534 ~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
+.+++.+||++|.|+++++..|...+.
T Consensus 70 ~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 70 GIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CCcEEEEEccccccHHHHHHHHHHHHh
Confidence 667899999999999999999988765
No 341
>PTZ00184 calmodulin; Provisional
Probab=98.62 E-value=3.3e-07 Score=83.32 Aligned_cols=137 Identities=13% Similarity=0.275 Sum_probs=94.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
.+.++..|..+|.+++|.|+..++..++..+|. +...+..+|..+|.+++|.|+|++|+.++..+.............
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 357889999999999999999999999987764 455678999999999999999999999887653222111112222
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
+...+... .+......+..++..+|-.. +.+++..++..+ +.+ .....+|++|+..+.+
T Consensus 90 F~~~D~~~---~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~--d~~-~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 90 FKVFDRDG---NGFISAAELRHVMTNLGEKL-------TDEEVDEMIREA--DVD-GDGQINYEEFVKMMMS 148 (149)
T ss_pred HHhhCCCC---CCeEeHHHHHHHHHHHCCCC-------CHHHHHHHHHhc--CCC-CCCcCcHHHHHHHHhc
Confidence 22222221 22233445777776666433 677889999888 333 2345789999876543
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.59 E-value=8.2e-08 Score=87.00 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=45.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
+++++|.+|||||||+|+|++..+. ..+.++|++.....+.+++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999988754 4666777888777777765 4799999995
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.59 E-value=9.9e-08 Score=88.16 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=44.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
..++|+++|.||||||||+|+|.+.. ....++++|++.....+.++. .+.|+||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 45789999999999999999999875 345667778777766655543 3789999994
No 344
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.58 E-value=2.6e-07 Score=88.21 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=65.5
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH---
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA--- 530 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~--- 530 (593)
|..++..++++||++|+|+|++++... |...+... ..+.|+++|+||+|+.... ........+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-------~~~~~~~~~~~~~ 90 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-------KNLVRIKNWLRAK 90 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-------CCHHHHHHHHHHH
Confidence 577888999999999999999876421 22233222 2358999999999986421 1122222222
Q ss_pred --HHhCC---eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 531 --QQYGA---IFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 531 --~~~~~---~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
...+. .++++||++|.|+++++..|...+.
T Consensus 91 ~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 91 AAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 22332 5889999999999999999988774
No 345
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.57 E-value=2.6e-07 Score=76.14 Aligned_cols=64 Identities=19% Similarity=0.404 Sum_probs=56.1
Q ss_pred HHHHHHhHhCC-CC-CCcccHHHHHHHHH---cCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 5 QLEELFKTCDK-KG-TGQIGPEEFRELCT---GFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 5 ~l~~~F~~~D~-d~-~G~I~~~el~~~l~---~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
.+-++|+.||. +| +|+|+..||+.++. .+| +++.+++.+|..+|.|++|+|+|+||+..+....
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 46689999997 77 89999999999996 245 6788899999999999999999999998887653
No 346
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.56 E-value=5.7e-07 Score=83.44 Aligned_cols=80 Identities=20% Similarity=0.155 Sum_probs=49.4
Q ss_pred CEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH--hCCeEEEEcCC
Q psy8073 466 DGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ--YGAIFMETSSK 543 (593)
Q Consensus 466 d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~--~~~~~~e~Sa~ 543 (593)
+.-|+|+|++..+..- ++-.+.+. ..=++|+||.||..... ..-+....-++. .+++|+++|++
T Consensus 119 ~~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~------~dlevm~~da~~~np~~~ii~~n~k 184 (202)
T COG0378 119 HLRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVG------ADLEVMARDAKEVNPEAPIIFTNLK 184 (202)
T ss_pred ceEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhC------ccHHHHHHHHHHhCCCCCEEEEeCC
Confidence 3888888888653210 00000000 11279999999976522 222333333333 34689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy8073 544 SGDNILDALIALSRHV 559 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l 559 (593)
+|.|+++++.++....
T Consensus 185 tg~G~~~~~~~i~~~~ 200 (202)
T COG0378 185 TGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCcCHHHHHHHHHhhc
Confidence 9999999999987653
No 347
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.54 E-value=2.3e-07 Score=80.24 Aligned_cols=60 Identities=23% Similarity=0.415 Sum_probs=53.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
..++.-+|..+|.|+||+|+.+||..++ ++.....+..+|..+|.|+||.||++||..++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4578899999999999999999999887 55555667899999999999999999999998
No 348
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.52 E-value=2.9e-07 Score=76.14 Aligned_cols=64 Identities=23% Similarity=0.420 Sum_probs=56.7
Q ss_pred HHHHHHHhHhCC--CCCCcccHHHHHHHHHc-CCC------CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDK--KGTGQIGPEEFRELCTG-FDI------QPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D~--d~~G~I~~~el~~~l~~-l~l------~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
+.++.+|..||+ +++|+|+..+|..+++. +|. +..+++.||..+|.+++|.|+|++|+.++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 578899999999 89999999999999974 442 36788899999999999999999999998765
No 349
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.52 E-value=6.4e-08 Score=94.12 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=83.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC------cc---ccCC-CC-----ccce-----------eeEEEEEEEC------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE------VF---LNKL-GS-----TLGV-----------DFQMKTIRVD------ 437 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~------~~---~~~~-~~-----t~g~-----------~~~~~~~~~~------ 437 (593)
.+.+.|.|.|+||+|||||++.|... .+ .-++ ++ .+|. ..+.+.+.-.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35689999999999999999998643 00 0001 11 1111 1222332211
Q ss_pred ------------CeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEe
Q psy8073 438 ------------ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICAN 505 (593)
Q Consensus 438 ------------~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~N 505 (593)
..++.+.|+.|.|.-.- --....-||.+++|.-..-.+..+.++.=+.++ +=|+|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence 11255778888873211 112356799999999887666555444311122 2389999
Q ss_pred CCCCCCccccccccccCHHHHHHHHH------HhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 506 KVDLRADAQAKGVKCIDREVGEKLAQ------QYGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 506 K~Dl~~~~~~~~~~~v~~~~~~~l~~------~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
|+|+.... ....+....+.. .+..+++.|||.+|.||+++.++|.+...
T Consensus 176 KaD~~gA~------~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGAD------RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHHH------HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHHH------HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99964321 111111111211 12347999999999999999999887543
No 350
>PRK12289 GTPase RsgA; Reviewed
Probab=98.50 E-value=5.9e-07 Score=93.36 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=66.2
Q ss_pred hhhhHhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
..+.+..+.++|++|+|+|+.++. ++..+..|+..+. ..++|+|||+||+||..... + .........+
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~------~--~~~~~~~~~~ 148 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTE------Q--QQWQDRLQQW 148 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHH------H--HHHHHHHHhc
Confidence 445556789999999999998775 4445666765553 34589999999999964310 0 1111222456
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 534 GAIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 534 ~~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
+..++.+||++|.|+++++..|..
T Consensus 149 g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 149 GYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred CCeEEEEEcCCCCCHHHHhhhhcc
Confidence 788999999999999999988764
No 351
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.50 E-value=4.7e-07 Score=74.72 Aligned_cols=64 Identities=22% Similarity=0.378 Sum_probs=56.1
Q ss_pred HHHHHHHhH-hCCCCCC-cccHHHHHHHHHcC-------CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKT-CDKKGTG-QIGPEEFRELCTGF-------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~-~D~d~~G-~I~~~el~~~l~~l-------~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+..+|+. +|++|+| +|+..||+.++... ..++.+++.+|..+|.|+||.|+|+||+.++..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 467889999 7898986 99999999999843 3567889999999999999999999999988765
No 352
>KOG1954|consensus
Probab=98.48 E-value=7.5e-07 Score=89.28 Aligned_cols=120 Identities=20% Similarity=0.313 Sum_probs=83.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccC-CCCccceeeEEEEEEEC------CeeE---------------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK-LGSTLGVDFQMKTIRVD------ERNV--------------------- 441 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~-~~~t~g~~~~~~~~~~~------~~~~--------------------- 441 (593)
...+=|+++|.=..||||||+.|+...|++. .++.+.+++....+.-+ |+.+
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 4456799999999999999999999987764 34445566665555422 2111
Q ss_pred ------------EEEEEecCCch-----------hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCC
Q psy8073 442 ------------ALQLWDTAGQE-----------RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSI 498 (593)
Q Consensus 442 ------------~~~l~DTaG~e-----------~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~ 498 (593)
.+.|+||||+- .|......++.++|.||++||+..-+--.... ..|....++.-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~---~vi~aLkG~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFK---RVIDALKGHED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHH---HHHHHhhCCcc
Confidence 17799999931 24556777889999999999986433222222 24555666666
Q ss_pred cEEEEEeCCCCCCc
Q psy8073 499 PIVICANKVDLRAD 512 (593)
Q Consensus 499 piivV~NK~Dl~~~ 512 (593)
.+-||.||+|..+.
T Consensus 213 kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT 226 (532)
T ss_pred eeEEEeccccccCH
Confidence 78899999998764
No 353
>KOG1029|consensus
Probab=98.48 E-value=0.00011 Score=79.61 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=57.5
Q ss_pred CHHHHHHHHhHhC--CCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCD--KKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 2 ~~~~l~~~F~~~D--~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
+.++...-|..|+ +-+.|||+...-+.+|...|+++.-+..||...|.|.||+++..||.-+|..+
T Consensus 11 T~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQLKPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred chHHHHHHHHHHhccCCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHH
Confidence 3455555666666 46789999999999999999999999999999999999999999999998765
No 354
>KOG0447|consensus
Probab=98.47 E-value=7.3e-06 Score=85.86 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=77.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC-ccccCCCC---------------------------------------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE-VFLNKLGS--------------------------------------------- 423 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~-~~~~~~~~--------------------------------------------- 423 (593)
..-++|||||+..+||||.+..+... .|+...+.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 44579999999999999999987653 22221111
Q ss_pred ------ccceeeEE--EEEEECCeeE-EEEEEecCCc-------------hhhhhhhHhhccCCCEEEEEEeCCChhcHH
Q psy8073 424 ------TLGVDFQM--KTIRVDERNV-ALQLWDTAGQ-------------ERFRSMTKNYFRRADGVMLLYDVTNERSFN 481 (593)
Q Consensus 424 ------t~g~~~~~--~~~~~~~~~~-~~~l~DTaG~-------------e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~ 481 (593)
--|.++.. ..+++.|.+. ...|+|.||. +...++.+.|+.+.++||+|+--..-+.-
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE- 464 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE- 464 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh-
Confidence 01222222 2233334332 4779999992 34467889999999999999853321111
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 482 SVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 482 ~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
-...-+.+..+.+.+...|+|.+|.|+...
T Consensus 465 -RSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 -RSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred -hhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 111234556667788899999999999754
No 355
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.47 E-value=5.7e-07 Score=88.64 Aligned_cols=158 Identities=19% Similarity=0.253 Sum_probs=91.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCc------c--cc-C-CCC-----cccee-----------eEEEEEE-------
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEV------F--LN-K-LGS-----TLGVD-----------FQMKTIR------- 435 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~------~--~~-~-~~~-----t~g~~-----------~~~~~~~------- 435 (593)
..+...|.|.|.||||||||+..|...- + .. + .++ .+|-. .+...+.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 3456799999999999999999986430 0 00 0 111 11111 1111111
Q ss_pred -----------ECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEE
Q psy8073 436 -----------VDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICA 504 (593)
Q Consensus 436 -----------~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~ 504 (593)
++..++-+.|+.|.|.-... -....-||.+++|.=..-.+..+.++.=+.+| -=|+|+
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vI 196 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVI 196 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeE
Confidence 11223557788888742211 12345689999888776666666555322222 227899
Q ss_pred eCCCCCCccccccccccCHHHHHHHH--------HHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 505 NKVDLRADAQAKGVKCIDREVGEKLA--------QQYGAIFMETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 505 NK~Dl~~~~~~~~~~~v~~~~~~~l~--------~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
||.|...... .. .+....+. ..+..+++.|||.+|.|++++.++|........
T Consensus 197 NKaD~~~A~~--a~----r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 197 NKADRKGAEK--AA----RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred eccChhhHHH--HH----HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 9999654311 11 11111111 123347999999999999999999988766543
No 356
>PF14658 EF-hand_9: EF-hand domain
Probab=98.46 E-value=3.2e-07 Score=69.76 Aligned_cols=59 Identities=20% Similarity=0.439 Sum_probs=53.2
Q ss_pred HHhHhCCCCCCcccHHHHHHHHHcCCC-CHH--HHHHHHHHhCCCCC-CcccHHHHHHHHHHH
Q psy8073 9 LFKTCDKKGTGQIGPEEFRELCTGFDI-QPT--DSDAIFADLDHDGD-GKVSLEDFAYGFREF 67 (593)
Q Consensus 9 ~F~~~D~d~~G~I~~~el~~~l~~l~l-~~~--e~~~i~~~~D~d~~-G~i~~~eF~~~~~~~ 67 (593)
+|.+||.++.|.|...++..+|+.++. +|+ +++.+.+.+|+++. |.|+|+.|+.+|..+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 699999999999999999999998876 555 56699999999987 999999999999865
No 357
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.46 E-value=3.7e-07 Score=92.94 Aligned_cols=58 Identities=33% Similarity=0.473 Sum_probs=47.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
...++|+|+|.||||||||+|+|++... ..+++++|+|.....+.++. .+.||||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 4678999999999999999999998763 34567788888877776654 4789999995
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.44 E-value=4.3e-07 Score=85.18 Aligned_cols=59 Identities=29% Similarity=0.425 Sum_probs=46.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
....++|+++|.+|||||||+|+|++..+. .++.+.|+++....+.++ ..+.+|||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 345689999999999999999999987653 456666777777767665 34789999994
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.44 E-value=3.1e-07 Score=94.74 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=51.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
....++|.|+|.||||||||||+|++.. ...+++.+|+|.....+.++.. +.|+||||+
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~-~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKK-VAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhccc-ceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 4556899999999999999999999987 4678888999999999988763 899999995
No 360
>PRK00098 GTPase RsgA; Reviewed
Probab=98.42 E-value=1.6e-06 Score=88.77 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=62.8
Q ss_pred hccCCCEEEEEEeCCChhcHHH-HHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEE
Q psy8073 461 YFRRADGVMLLYDVTNERSFNS-VKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFME 539 (593)
Q Consensus 461 ~~~~ad~vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e 539 (593)
.+.++|++|+|+|++++.++.. +..|+..+.. .++|+++|+||+||.... . ............+.++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~------~-~~~~~~~~~~~~g~~v~~ 146 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDL------E-EARELLALYRAIGYDVLE 146 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCH------H-HHHHHHHHHHHCCCeEEE
Confidence 4689999999999998876544 4567666543 458999999999996321 0 111223344556788999
Q ss_pred EcCCCCCCHHHHHHHHH
Q psy8073 540 TSSKSGDNILDALIALS 556 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~ 556 (593)
+||++|.|+++++..|.
T Consensus 147 vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 147 LSAKEGEGLDELKPLLA 163 (298)
T ss_pred EeCCCCccHHHHHhhcc
Confidence 99999999999988764
No 361
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.42 E-value=5e-07 Score=91.48 Aligned_cols=58 Identities=31% Similarity=0.502 Sum_probs=46.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
...++|+|+|.||||||||+|+|.+... ..++..+|+|.....+.++. .+.||||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 4568999999999999999999998753 34466778887777777654 4799999996
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.40 E-value=3.8e-07 Score=87.04 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=45.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCcc-------ccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVF-------LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~-------~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
.+.+|+|+|.||||||||+|+|++... ....+..+|++.....+.++. .+.||||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 346899999999999999999998642 224556678888888887764 4799999993
No 363
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.40 E-value=3e-07 Score=92.02 Aligned_cols=56 Identities=18% Similarity=0.056 Sum_probs=36.9
Q ss_pred CcEEEEEeCCCCCCccccccccccCHHHHHHHHHH-hCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 498 IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ-YGAIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 498 ~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~-~~~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
.+-++|+||+|+..... ..+ ......+... .++.++++||++|.|+++++.+|...
T Consensus 231 ~ADIVVLNKiDLl~~~~----~dl-e~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLN----FDV-EKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccH----HHH-HHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999964210 001 1112222222 24679999999999999999998763
No 364
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.39 E-value=1.1e-06 Score=89.36 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=66.6
Q ss_pred HhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 459 KNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
...+.++|++|+|+|++++. ++..+..|+..+.. .++|+++|+||+||.... .......+....+.++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--------~~~~~~~~~~~~g~~v 141 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--------EEELELVEALALGYPV 141 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--------HHHHHHHHHHhCCCeE
Confidence 34588999999999999987 77888888876654 358999999999996431 0111222334567889
Q ss_pred EEEcCCCCCCHHHHHHHHHH
Q psy8073 538 METSSKSGDNILDALIALSR 557 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~ 557 (593)
+.+||++|.|+++++..|..
T Consensus 142 ~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 142 LAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEEECCCCccHHHHHhhhcc
Confidence 99999999999999887763
No 365
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.38 E-value=8e-07 Score=81.92 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=44.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
...+|+++|.+|||||||+|+|.+.. ...++++.|++.....+..+. .+.||||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 45789999999999999999999765 445677888776554444443 5899999993
No 366
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.36 E-value=5.2e-06 Score=84.18 Aligned_cols=140 Identities=18% Similarity=0.292 Sum_probs=81.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccC----------CCCccceeeEEEEEEECCeeEEEEEEecCCch-------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK----------LGSTLGVDFQMKTIRVDERNVALQLWDTAGQE------- 452 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~----------~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e------- 452 (593)
.-.+.|.++|+.|.|||||+|.|++...... ..+|+........+.-++..+.+.++||||--
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3458999999999999999999998732221 22343344444444456667788999999911
Q ss_pred ------hh-hhhhHhh------------c--cCCCEEEEEEeCCC-hhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 453 ------RF-RSMTKNY------------F--RRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 453 ------~~-~~~~~~~------------~--~~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
.| ......| + .+.|++|+.+-.+. ..+..++. .++.+.. .+.+|-|+-|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe----~Mk~ls~-~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE----AMKRLSK-RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH----HHHHHhc-ccCeeeeeeccccC
Confidence 11 1111111 1 24688888887653 33334443 2333333 37789999999986
Q ss_pred CccccccccccCHHHHHHHHHHhCCeEE
Q psy8073 511 ADAQAKGVKCIDREVGEKLAQQYGAIFM 538 (593)
Q Consensus 511 ~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 538 (593)
...... -....+......+++++|
T Consensus 176 T~~El~----~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 176 TDDELA----EFKERIREDLEQYNIPVF 199 (373)
T ss_pred CHHHHH----HHHHHHHHHHHHhCCcee
Confidence 542211 112233334445666655
No 367
>KOG0028|consensus
Probab=98.35 E-value=1.2e-06 Score=77.79 Aligned_cols=65 Identities=20% Similarity=0.457 Sum_probs=60.5
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+.++++.+|+.+|.|++|.|+..+|+.++..|| ++.+++.+|+..+|.|++|.|+-+||..+|..
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 467899999999999999999999999999998 77889999999999999999999999998864
No 368
>KOG2655|consensus
Probab=98.35 E-value=6.5e-06 Score=84.16 Aligned_cols=163 Identities=13% Similarity=0.181 Sum_probs=92.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccC---------CCCccceeeEEEEEEECCeeEEEEEEecCCc----------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNK---------LGSTLGVDFQMKTIRVDERNVALQLWDTAGQ---------- 451 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~---------~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~---------- 451 (593)
-.+.+.++|+.|.|||||||.|+...+.+. ...|.........+.-+|..+.++++||||-
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 348999999999999999999988744432 2224334444444444666788889999991
Q ss_pred ---hhh-hhhhH-----------hhcc--CCCEEEEEEeCCCh-hcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcc
Q psy8073 452 ---ERF-RSMTK-----------NYFR--RADGVMLLYDVTNE-RSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADA 513 (593)
Q Consensus 452 ---e~~-~~~~~-----------~~~~--~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~ 513 (593)
-.| .+... ..+. ..|++|+.+..+.- ....++. .++... ..+.+|-|+-|+|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~----~Mk~l~-~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE----FMKKLS-KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH----HHHHHh-ccccccceeeccccCCHH
Confidence 111 11111 2233 67899998886532 2223333 222222 247889999999986542
Q ss_pred ccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhccc
Q psy8073 514 QAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 514 ~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
... .....+......+++.++.-..-.. +..+....+.+....|.
T Consensus 175 El~----~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~PF 219 (366)
T KOG2655|consen 175 ELN----QFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIPF 219 (366)
T ss_pred HHH----HHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCCe
Confidence 111 1122333334455665544333322 55555556666654444
No 369
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.34 E-value=1.3e-06 Score=64.99 Aligned_cols=50 Identities=30% Similarity=0.614 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 17 GTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 17 ~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.+|+|+.++|..+|..+| +++.++..||..+|.|++|+|+|+||+.+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 379999999999998554 77889999999999999999999999999864
No 370
>KOG0041|consensus
Probab=98.34 E-value=1.2e-06 Score=80.32 Aligned_cols=65 Identities=26% Similarity=0.423 Sum_probs=59.9
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHH--HHHHHhCCCCCCcccHHHHHHHHHHHhh
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDFAYGFREFLN 69 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~--~i~~~~D~d~~G~i~~~eF~~~~~~~~~ 69 (593)
.+...|..+|.+.||||+..||+.+|..||.|++.+. .|+...|.|.||+|+|-+|+.+|+....
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999875 8999999999999999999999988643
No 371
>KOG0082|consensus
Probab=98.30 E-value=9e-06 Score=83.19 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=81.5
Q ss_pred eeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcH-------HHHHHHHHHHHHHcC----C
Q psy8073 428 DFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSF-------NSVKNWVEAVEEVTE----N 496 (593)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~-------~~~~~~~~~i~~~~~----~ 496 (593)
.+....+.+.+ ..+.++|.+||...+..|..+|.++++||+|++++...-. ..+..=+..+..++. .
T Consensus 184 GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 184 GIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred CeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 34444555555 8899999999998889999999999999999999863321 122222223333332 4
Q ss_pred CCcEEEEEeCCCCCCcc---------ccccccccCHHHHHH-----HHHHh-----CCeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 497 SIPIVICANKVDLRADA---------QAKGVKCIDREVGEK-----LAQQY-----GAIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 497 ~~piivV~NK~Dl~~~~---------~~~~~~~v~~~~~~~-----l~~~~-----~~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
+.++|++.||.||-..- -+.....-..+.+.. +...+ .+-+..++|.+-.+|..+|.++..
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 58999999999984320 000000001112111 11111 122345678888899999988887
Q ss_pred HHHhh
Q psy8073 558 HVYVF 562 (593)
Q Consensus 558 ~l~~~ 562 (593)
.+...
T Consensus 342 ~Ii~~ 346 (354)
T KOG0082|consen 342 TIIQN 346 (354)
T ss_pred HHHHH
Confidence 77653
No 372
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.29 E-value=2.3e-06 Score=64.69 Aligned_cols=59 Identities=31% Similarity=0.624 Sum_probs=52.6
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 6 LEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 6 l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
++.+|..+|.+++|.|+..++..++..++ .+...+..+|..+|.+++|.|++++|...+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57889999999999999999999999776 555667799999999999999999998765
No 373
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.29 E-value=1.5e-06 Score=80.07 Aligned_cols=58 Identities=24% Similarity=0.392 Sum_probs=42.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
....+|+|+|.||||||||+|+|.+... ..++...|++.....+.++ ..+.|+||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLK-LKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccc-ccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 3568999999999999999999998652 2234445555555556554 25899999993
No 374
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.28 E-value=3.1e-06 Score=88.95 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=69.6
Q ss_pred chhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHH---
Q psy8073 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGE--- 527 (593)
Q Consensus 451 ~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~--- 527 (593)
.+.|..+...++..++++++|+|+.+.. ..|...+..... +.|+++|+||+|+... .+..+...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-------~~~~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-------SVNLSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-------CCCHHHHHHHH
Confidence 5788888999999999999999997654 224455555433 4799999999999642 12222222
Q ss_pred -HHHHHhCC---eEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 528 -KLAQQYGA---IFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 528 -~l~~~~~~---~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
.+++..++ .++.+||++|.|+++++..|.+.
T Consensus 117 ~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 34555665 38899999999999999998654
No 375
>KOG0034|consensus
Probab=98.27 E-value=2.3e-06 Score=80.31 Aligned_cols=65 Identities=29% Similarity=0.475 Sum_probs=54.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---CCC--HHH----HHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---DIQ--PTD----SDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~l~--~~e----~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
+++++-+|++||.+++|+|+++|+..++..+ +.. .+. ++.+|..+|.|+||+|+|+||...+...
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 3588999999999999999999999999833 233 333 3488999999999999999999998763
No 376
>PTZ00183 centrin; Provisional
Probab=98.26 E-value=2.7e-06 Score=78.32 Aligned_cols=64 Identities=20% Similarity=0.434 Sum_probs=49.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+..++.+|..||.+++|+|+..++..+|..+| ++..++..+|..+|.+++|.|+|++|..++..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 45677888888888888888888888887554 67777778888888888888888888777754
No 377
>PRK12288 GTPase RsgA; Reviewed
Probab=98.25 E-value=4.7e-06 Score=86.70 Aligned_cols=88 Identities=23% Similarity=0.292 Sum_probs=65.8
Q ss_pred ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 462 FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
..++|.+++|++++...++..+..|+..+. ..++|++||+||+||..... ... ...........+.+++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~---~~~i~~VIVlNK~DL~~~~~----~~~-~~~~~~~y~~~g~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE---TLGIEPLIVLNKIDLLDDEG----RAF-VNEQLDIYRNIGYRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCcHH----HHH-HHHHHHHHHhCCCeEEEEe
Confidence 567999999999998889999988976554 34589999999999965311 001 1111223345678899999
Q ss_pred CCCCCCHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSR 557 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~ 557 (593)
|++|.|+++++..|..
T Consensus 190 A~tg~GideL~~~L~~ 205 (347)
T PRK12288 190 SHTGEGLEELEAALTG 205 (347)
T ss_pred CCCCcCHHHHHHHHhh
Confidence 9999999999998865
No 378
>KOG1491|consensus
Probab=98.23 E-value=3.5e-06 Score=84.13 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=58.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEE--EC---------------CeeEEEEEEecCCc
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIR--VD---------------ERNVALQLWDTAGQ 451 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~--~~---------------~~~~~~~l~DTaG~ 451 (593)
....++|.|||.||||||||+|+|+.....+..-|. +|..+.... +. -....++++|+||.
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF--~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPF--CTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCc--ceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 446689999999999999999999988644333333 344333333 21 12356899999993
Q ss_pred h-------hhhhhhHhhccCCCEEEEEEeCCC
Q psy8073 452 E-------RFRSMTKNYFRRADGVMLLYDVTN 476 (593)
Q Consensus 452 e-------~~~~~~~~~~~~ad~vi~v~D~~~ 476 (593)
- -.......-++.+|+++.|+++..
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2 223334456789999999998753
No 379
>KOG1424|consensus
Probab=98.21 E-value=1.8e-06 Score=90.47 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=52.8
Q ss_pred CCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 385 PTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 385 ~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
........+.|.+||.|||||||+||+|++.. ...++.|+|.|-.-.++.++. .+.|.|+||.
T Consensus 307 t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~K-kVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 307 TGERYKDVVTVGFVGYPNVGKSSTINALVGRK-KVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred CCcCCCceeEEEeecCCCCchhHHHHHHhcCc-eeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 33444457999999999999999999999997 455789999998888888875 5899999994
No 380
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.20 E-value=1.7e-05 Score=82.64 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=81.5
Q ss_pred CCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh----------cHHHHHHHHHHHH
Q psy8073 422 GSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER----------SFNSVKNWVEAVE 491 (593)
Q Consensus 422 ~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~----------s~~~~~~~~~~i~ 491 (593)
.+|.| +....+.+++ +.+.+||.+|+..++..|..++.++++||+|+|+++.. .+......+..+.
T Consensus 169 ~~T~G--i~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~ 244 (342)
T smart00275 169 VPTTG--IQETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC 244 (342)
T ss_pred CCccc--eEEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH
Confidence 34544 3444555665 78999999999999999999999999999999999632 2222222222222
Q ss_pred H-HcCCCCcEEEEEeCCCCCCcc----cc-----ccccccCHHHHH-----HHHHHh------CCeEEEEcCCCCCCHHH
Q psy8073 492 E-VTENSIPIVICANKVDLRADA----QA-----KGVKCIDREVGE-----KLAQQY------GAIFMETSSKSGDNILD 550 (593)
Q Consensus 492 ~-~~~~~~piivV~NK~Dl~~~~----~~-----~~~~~v~~~~~~-----~l~~~~------~~~~~e~Sa~~g~gi~~ 550 (593)
. ..-.++|+||++||.|+...- +. .....-....+. ++.... .+-...++|.+-.++..
T Consensus 245 ~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 245 NSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred cCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHH
Confidence 2 222568999999999974320 00 000000111111 111111 12245677777788888
Q ss_pred HHHHHHHHHHh
Q psy8073 551 ALIALSRHVYV 561 (593)
Q Consensus 551 l~~~L~~~l~~ 561 (593)
+|..+...+..
T Consensus 325 v~~~v~~~I~~ 335 (342)
T smart00275 325 VFDAVKDIILQ 335 (342)
T ss_pred HHHHHHHHHHH
Confidence 88777666654
No 381
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.20 E-value=4.2e-06 Score=86.72 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=56.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcc-c-cCCCCccceeeEEEEEEECCe---------------eEEEEEEecCCchh--
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVF-L-NKLGSTLGVDFQMKTIRVDER---------------NVALQLWDTAGQER-- 453 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~-~-~~~~~t~g~~~~~~~~~~~~~---------------~~~~~l~DTaG~e~-- 453 (593)
+++.|+|.||||||||+|+|++... . +.+ +..+.+.....+.+.+. ...+.++|.||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP-PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC-CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 7899999999999999999998764 2 222 22212333334444332 24689999999432
Q ss_pred -----hhhhhHhhccCCCEEEEEEeCC
Q psy8073 454 -----FRSMTKNYFRRADGVMLLYDVT 475 (593)
Q Consensus 454 -----~~~~~~~~~~~ad~vi~v~D~~ 475 (593)
........++.+|++++|+++.
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2234455688999999999985
No 382
>KOG1143|consensus
Probab=98.19 E-value=4.7e-06 Score=83.71 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=95.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccc-----------------------cCCCCccceeeEEEEEEEC----------C
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFL-----------------------NKLGSTLGVDFQMKTIRVD----------E 438 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~-----------------------~~~~~t~g~~~~~~~~~~~----------~ 438 (593)
.++|+++|...+|||||+-.|..++.. .+...++|.+-..+.+++. .
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 479999999999999999888765321 1222344544444444332 2
Q ss_pred eeEEEEEEecCCchhhhhhhHhhcc--CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccc
Q psy8073 439 RNVALQLWDTAGQERFRSMTKNYFR--RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAK 516 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~~~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~ 516 (593)
....++|+|.||+.+|...+...+. -.|.+++|+++......- .++.+..+... ++|++|+.+|+|+.+.....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhHH
Confidence 2345899999999999655544333 368888999987765432 23333344433 49999999999997652100
Q ss_pred -------------c-----ccccCHHHHHHHHHHh----CCeEEEEcCCCCCCHHHHH
Q psy8073 517 -------------G-----VKCIDREVGEKLAQQY----GAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 517 -------------~-----~~~v~~~~~~~l~~~~----~~~~~e~Sa~~g~gi~~l~ 552 (593)
. .+.....++-.-+... -.+++.+|..+|+|+.-+.
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 0 0111122222222221 2478999999999985443
No 383
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.3e-05 Score=84.21 Aligned_cols=143 Identities=16% Similarity=0.250 Sum_probs=84.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.+-|+|||+||+||||||..|+..-. ..|+..-..+.++ +.|....++|..+|. ...+ ......-||+|
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTv-vsgK~RRiTflEcp~--Dl~~-miDvaKIaDLV 137 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITV-VSGKTRRITFLECPS--DLHQ-MIDVAKIADLV 137 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEE-eecceeEEEEEeChH--HHHH-HHhHHHhhhee
Confidence 45668899999999999999999876521 1111111111122 456667899999984 3322 22345679999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHH-HHHHHHh-CCeEEEEcCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVG-EKLAQQY-GAIFMETSSKSG 545 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~-~~l~~~~-~~~~~e~Sa~~g 545 (593)
|+++|.+-+...+... +++.+ ..+++| ++-|++..||...+. +++.+....- +-|...| |+.+|.+|...+
T Consensus 138 lLlIdgnfGfEMETmE-FLnil---~~HGmPrvlgV~ThlDlfk~~s--tLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 138 LLLIDGNFGFEMETME-FLNIL---ISHGMPRVLGVVTHLDLFKNPS--TLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred EEEeccccCceehHHH-HHHHH---hhcCCCceEEEEeecccccChH--HHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 9999998665444433 33333 344555 678899999976422 1222111111 1122222 567888886653
No 384
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.17 E-value=6.3e-06 Score=76.08 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=59.7
Q ss_pred HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEE
Q psy8073 459 KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFM 538 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 538 (593)
+..+..||++|+|+|++++.... ...+...+... ..++|+|+|+||+|+.... . .......+...+...++
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~------~-~~~~~~~~~~~~~~~~~ 73 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW------V-TARWVKILSKEYPTIAF 73 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHH------H-HHHHHHHHhcCCcEEEE
Confidence 45678999999999999875321 12222333322 3348999999999996431 0 11222333333333457
Q ss_pred EEcCCCCCCHHHHHHHHHHHH
Q psy8073 539 ETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l 559 (593)
.+||++|.|+++++..|...+
T Consensus 74 ~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 74 HASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EeeccccccHHHHHHHHHHHH
Confidence 899999999999999987654
No 385
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.14 E-value=8.7e-06 Score=76.31 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=64.8
Q ss_pred cCCc-hhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHH
Q psy8073 448 TAGQ-ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVG 526 (593)
Q Consensus 448 TaG~-e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~ 526 (593)
.||+ .+........+.+||++|+|+|++++...... .+. ... .+.|+++|+||+|+.... .+ ....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~---~~~--~~k~~ilVlNK~Dl~~~~------~~-~~~~ 68 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLE---KIL--GNKPRIIVLNKADLADPK------KT-KKWL 68 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhH---hHh--cCCCEEEEEehhhcCChH------HH-HHHH
Confidence 3554 34455667888999999999999876543221 111 111 237999999999995321 01 1111
Q ss_pred HHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 527 EKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 527 ~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
.+....+..++.+||+++.|++++...|...+.
T Consensus 69 -~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 69 -KYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred -HHHHhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 111223446789999999999999999988764
No 386
>KOG0448|consensus
Probab=98.12 E-value=3.8e-05 Score=83.22 Aligned_cols=119 Identities=23% Similarity=0.332 Sum_probs=71.1
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCcc-ccCCCCc-------------------cc----------------------
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVF-LNKLGST-------------------LG---------------------- 426 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~-~~~~~~t-------------------~g---------------------- 426 (593)
.+...||+|.|.+++||||++|+++...+ +...++| .|
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 35678999999999999999999986522 1111111 01
Q ss_pred --eeeEEEEEEECCee----EEEEEEecCCc---hhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCC
Q psy8073 427 --VDFQMKTIRVDERN----VALQLWDTAGQ---ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS 497 (593)
Q Consensus 427 --~~~~~~~~~~~~~~----~~~~l~DTaG~---e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~ 497 (593)
...-.+.+.-++.. -.+.++|.||. ....+-...+...||++|+|.++.+..+.... ++ +.......
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~F---f~~vs~~K 261 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QF---FHKVSEEK 261 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HH---HHHhhccC
Confidence 00111111111100 02568899994 33445556777899999999999876554332 22 23333333
Q ss_pred CcEEEEEeCCCCCC
Q psy8073 498 IPIVICANKVDLRA 511 (593)
Q Consensus 498 ~piivV~NK~Dl~~ 511 (593)
..|+|+.||.|...
T Consensus 262 pniFIlnnkwDasa 275 (749)
T KOG0448|consen 262 PNIFILNNKWDASA 275 (749)
T ss_pred CcEEEEechhhhhc
Confidence 45778889999854
No 387
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.09 E-value=1.3e-05 Score=73.70 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=55.9
Q ss_pred CEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCC
Q psy8073 466 DGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSG 545 (593)
Q Consensus 466 d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g 545 (593)
|++|+|+|+.++.+... .|+.. ......++|+|+|+||+|+..... + ......+....+..++.+||++|
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~------~-~~~~~~~~~~~~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEV------L-RKWLAYLRHSYPTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHH------H-HHHHHHHHhhCCceEEEEeccCC
Confidence 78999999998866542 22221 222334589999999999954310 0 11112233334566889999999
Q ss_pred CCHHHHHHHHHHHH
Q psy8073 546 DNILDALIALSRHV 559 (593)
Q Consensus 546 ~gi~~l~~~L~~~l 559 (593)
.|+++++..|...+
T Consensus 71 ~gi~~L~~~i~~~~ 84 (155)
T cd01849 71 QGIEKKESAFTKQT 84 (155)
T ss_pred cChhhHHHHHHHHh
Confidence 99999999887654
No 388
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.08 E-value=1.3e-05 Score=66.22 Aligned_cols=64 Identities=23% Similarity=0.421 Sum_probs=54.5
Q ss_pred HHHHHHhHhCCC--CCCcccHHHHHHHHH-cCC--CC----HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 5 QLEELFKTCDKK--GTGQIGPEEFRELCT-GFD--IQ----PTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 5 ~l~~~F~~~D~d--~~G~I~~~el~~~l~-~l~--l~----~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
.+-..|+.|+.. .+|+|+..||+.+|. .+| ++ ..+++.||..+|.|++|.|+|++|+.++....
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 567789999855 489999999999997 444 44 77889999999999999999999999987653
No 389
>PRK12288 GTPase RsgA; Reviewed
Probab=98.07 E-value=5.3e-06 Score=86.30 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=37.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccc--cCCCCccc----eeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFL--NKLGSTLG----VDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~--~~~~~t~g----~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
.++|+|.+|||||||||+|++.... +..+...| ++.....+.+.+++ .|+||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 4899999999999999999976321 11111111 33444445554433 48999997665
No 390
>PRK12289 GTPase RsgA; Reviewed
Probab=98.07 E-value=5e-06 Score=86.53 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccc-------eeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG-------VDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g-------~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
.++|+|++|||||||||+|++... ..++...| +|.....+.+.+++ .|+||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~-~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE-LRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc-cccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 489999999999999999997641 22233333 45555555564433 6899999643
No 391
>PTZ00184 calmodulin; Provisional
Probab=98.06 E-value=1.3e-05 Score=72.72 Aligned_cols=60 Identities=30% Similarity=0.616 Sum_probs=31.9
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
.++.+|..||.+++|+|+..++..+|..+| ++..++..+|..+|.+++|+|+|+||..++
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 345555555555555555555555555333 344444555555555555555555555443
No 392
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.04 E-value=0.00017 Score=64.95 Aligned_cols=147 Identities=19% Similarity=0.337 Sum_probs=88.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecC-C-------------------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA-G------------------- 450 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTa-G------------------- 450 (593)
..+||.|.|+||||||||+.++...-- . .+-++ -.|....+.-+|..+-|.++|++ |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~-~-~g~kv-gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR-E-KGYKV-GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH-h-cCcee-eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 468999999999999999999875421 1 11222 23555666677777888888888 4
Q ss_pred --chhhh----hhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHH
Q psy8073 451 --QERFR----SMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDRE 524 (593)
Q Consensus 451 --~e~~~----~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~ 524 (593)
.+.+. ......++.||++|+ |=--+.-+ ..+.+...+......+.|+|.+..+-+. ++
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr-~P------------ 144 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR-HP------------ 144 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC-Ch------------
Confidence 11111 123344566888765 43223222 1234555666666677899888877653 21
Q ss_pred HHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 525 VGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 525 ~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
....+. ..+..++. .|..|-+.++..+.+.+.
T Consensus 145 ~v~~ik-~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 145 LVQRIK-KLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred HHHHhh-hcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 122222 33444443 556666688888877664
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=98.03 E-value=6.7e-06 Score=86.51 Aligned_cols=57 Identities=28% Similarity=0.342 Sum_probs=44.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcc----ccCCCCccceeeEEEEEEECCeeEEEEEEecCCch
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVF----LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~----~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e 452 (593)
.+++|||.+|||||||||+|+.... ...++..+|+|.....+.++++ ..|+||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4899999999999999999986421 1224667788888888877653 4799999963
No 394
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.03 E-value=3.6e-05 Score=75.38 Aligned_cols=87 Identities=15% Similarity=0.043 Sum_probs=54.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--ccccC---CCCccceeeEEEEEEECCeeEEEEEEecCCchhh------hhhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--VFLNK---LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF------RSMT 458 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~~---~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~------~~~~ 458 (593)
.+..-|+|+|++++|||+|+|.|++. .|... ...|.|+-........ +....+.++||+|.... ....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 34567899999999999999999988 54322 2334333322222211 23478999999994321 2222
Q ss_pred HhhccC--CCEEEEEEeCCCh
Q psy8073 459 KNYFRR--ADGVMLLYDVTNE 477 (593)
Q Consensus 459 ~~~~~~--ad~vi~v~D~~~~ 477 (593)
...+.. +|++|+..+....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 84 LFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHhCEEEEeccCccc
Confidence 233333 8888888887643
No 395
>KOG0460|consensus
Probab=98.02 E-value=3.2e-05 Score=77.13 Aligned_cols=190 Identities=14% Similarity=0.141 Sum_probs=112.0
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcC----------ccccC----CCCccceeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKE----------VFLNK----LGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~----------~~~~~----~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
.....++|.-+|+..-|||||--+++.- .|..+ -...-|.++....+.+......+-=.|+||+..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 4456789999999999999999887532 11111 112345566655555554445667789999999
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
|......-....|+.|+|+.++|..-.+.-.. +-..++..- ..++|.+||.|+.+++. ....-.-+.+.+...+
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEH-lLLArQVGV--~~ivvfiNKvD~V~d~e---~leLVEmE~RElLse~ 203 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREH-LLLARQVGV--KHIVVFINKVDLVDDPE---MLELVEMEIRELLSEF 203 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHH-HHHHHHcCC--ceEEEEEecccccCCHH---HHHHHHHHHHHHHHHc
Confidence 97666667778999999999999765444332 212333322 34778889999985532 2223344555666666
Q ss_pred C-----CeEEEEcC---CCCCCHHHHHHHHHHHHHhhccccccCCCCCCCccccccccc
Q psy8073 534 G-----AIFMETSS---KSGDNILDALIALSRHVYVFIPCVYLKDLPYTSVLIFIPFQK 584 (593)
Q Consensus 534 ~-----~~~~e~Sa---~~g~gi~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 584 (593)
+ ++++.=|| ..|.+-+--...|.+.+ +....|.+-.......+.++|..+
T Consensus 204 gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLl-davDsyip~P~R~~~~pFl~pie~ 261 (449)
T KOG0460|consen 204 GFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLL-DAVDSYIPTPERDLDKPFLLPIED 261 (449)
T ss_pred CCCCCCCCeeecchhhhhcCCCccccHHHHHHHH-HHHhccCCCcccccCCCceeehhh
Confidence 5 45665554 44533222222333322 223333333333344555666544
No 396
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.00 E-value=8.7e-06 Score=85.54 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=44.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcc----ccCCCCccceeeEEEEEEECCeeEEEEEEecCCch
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVF----LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~----~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e 452 (593)
+.+|+|+|.+|||||||+|+|++... ....+..+|++.....+.+++ .+.|+||||..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 36999999999999999999997532 124566678888777777743 25799999954
No 397
>KOG0998|consensus
Probab=98.00 E-value=2.2e-06 Score=98.59 Aligned_cols=260 Identities=14% Similarity=0.140 Sum_probs=147.0
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhh-hhhhccccc
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSD-ARRLKSNVN 80 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~-~~~~~~~~~ 80 (593)
+...|.++|..+|.+.+|+|+..+...+|...|++...+.++|..+|.+..|.|++.+|+..|+.+.... .+...+...
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~~~g~~lP~vl 360 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQKRAEGRSLPSVL 360 (847)
T ss_pred HHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhhhhhhhcCCCCcccc
Confidence 3567888999999999999999999999999999999999999999999999999999999988775542 222222222
Q ss_pred CCCCCCCCCC-----CCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhc---CC-CCCchhhhhHHHHHHHH
Q psy8073 81 AGAMSSEGPE-----RRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRT---SS-NCPEIVTHFEGALSSLL 151 (593)
Q Consensus 81 ~~~~~~~~~~-----~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~---~~-~~p~ll~~~E~~i~~~~ 151 (593)
.....+.... .....++..+.. .++ +..+...+...+.. .+ ..+.....-........
T Consensus 361 ~~s~~p~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 427 (847)
T KOG0998|consen 361 PSSLIPSENRKQTNPTTRASTAESPSS-----------EQS--SLAELKSLALSIASNPREKPRLEQSSSEAPRTTPVKT 427 (847)
T ss_pred cccccCccccccCCccccccccccCCc-----------ccc--ccccccccccccccccccccccccccccccccCcccc
Confidence 2222221100 000000000000 000 11111111111100 00 00000001111222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 152 DDVKRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQ 231 (593)
Q Consensus 152 ~~i~~~~~e~e~le~~l~r~~~~~~~~~~~l~eEmdqq~~~~~~~~~~ee~~k~e~~~~el~~~~e~e~~elq~~~~~~~ 231 (593)
..+.....+...++...+.. ..++..+++...|+++++...++.... .+.++..+.+-++++-.+++
T Consensus 428 s~~~~~~~~l~~~~s~~~~l-~~~~~~~~~k~~e~~~~~s~s~~~~~~------------~~~k~~~~~~~~s~~~~~~~ 494 (847)
T KOG0998|consen 428 SPVLELANELSNLASTSQQL-PAQKDTVQDKLNELDAQKSQSKEKFST------------TRKKKQEEPQWISSLDNDLN 494 (847)
T ss_pred cccccchhhhhhcchhhhcc-ccccchhhhhhhhhhhhhhHHHhhhhh------------hhhhhhccccccccccchhh
Confidence 44445566777777777776 666677777888888886655555444 44445555555555555655
Q ss_pred HHHHHHHHhhhhhccCcccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 232 KVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYE 287 (593)
Q Consensus 232 ~~e~~~~~~~~~~~~~~~e~~~l~~en~~L~~~l~~~q~~l~~~~~el~~l~~~~~ 287 (593)
.+..++.....+..++..+++.+.+....|...+.....+++.++.+|..++.++.
T Consensus 495 ~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~ 550 (847)
T KOG0998|consen 495 LLPLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMA 550 (847)
T ss_pred hcccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555443
No 398
>KOG2484|consensus
Probab=97.99 E-value=4.1e-06 Score=85.32 Aligned_cols=71 Identities=23% Similarity=0.408 Sum_probs=60.8
Q ss_pred cccCCCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 377 LSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 377 ~~~~~~~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
..++.++.........++|.|+|.|||||||+||+|..+.. =.+++++|.+..+..+.++. .+.|.|.||+
T Consensus 237 ~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 237 MKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred HHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheeccC---CceeccCCce
Confidence 34556777777788999999999999999999999998874 45788999999999998885 6899999994
No 399
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.97 E-value=5.8e-05 Score=77.67 Aligned_cols=146 Identities=23% Similarity=0.285 Sum_probs=81.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc------cc---cCC------------CCccceeeEEEEEEE------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV------FL---NKL------------GSTLGVDFQMKTIRV------------ 436 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~------~~---~~~------------~~t~g~~~~~~~~~~------------ 436 (593)
..+..|+|+|++|+||||++..|.... +. .+. ....+..+.......
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 345789999999999999999886431 00 000 001122222111000
Q ss_pred -CCeeEEEEEEecCCchh--------hhhhhH---h-hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEE
Q psy8073 437 -DERNVALQLWDTAGQER--------FRSMTK---N-YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVIC 503 (593)
Q Consensus 437 -~~~~~~~~l~DTaG~e~--------~~~~~~---~-~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV 503 (593)
...++.+.|+||||.-. ...+.. . .-...+.+++|.|++... ..+.+. ..+.... .+.-+|
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giI 265 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGII 265 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEE
Confidence 01236789999999422 111111 1 123578899999998543 233321 1111111 245789
Q ss_pred EeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q psy8073 504 ANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALI 553 (593)
Q Consensus 504 ~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~ 553 (593)
.||.|..... -..-.++..++.|+.+++ +|.+++++..
T Consensus 266 lTKlD~t~~~----------G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 266 LTKLDGTAKG----------GVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EECCCCCCCc----------cHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 9999964321 122334566788888887 8888877753
No 400
>KOG1487|consensus
Probab=97.96 E-value=3.2e-05 Score=74.39 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh----h---hhhHhhccCC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF----R---SMTKNYFRRA 465 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~----~---~~~~~~~~~a 465 (593)
.+|-++|-|.+||||++..|.+.. +. +.+--+++.......+...+-.++|.|.||+-.- . .......+-|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-Cc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 389999999999999999998763 11 2222223343333333333467999999994211 1 1223456789
Q ss_pred CEEEEEEeCCChhc
Q psy8073 466 DGVMLLYDVTNERS 479 (593)
Q Consensus 466 d~vi~v~D~~~~~s 479 (593)
+++++|.|+-.|.+
T Consensus 138 nli~~vld~~kp~~ 151 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLS 151 (358)
T ss_pred cEEEEEeeccCccc
Confidence 99999999876544
No 401
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.96 E-value=3.3e-05 Score=78.27 Aligned_cols=101 Identities=19% Similarity=0.156 Sum_probs=66.3
Q ss_pred cCCch-hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHH
Q psy8073 448 TAGQE-RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVG 526 (593)
Q Consensus 448 TaG~e-~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~ 526 (593)
.|||- +........+..||+||+|+|+..+.+..+. .+...+ .+.|+|+|+||+|+.+... . ....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~------~-~~~~ 70 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV------T-KQWL 70 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH------H-HHHH
Confidence 46653 2244566778999999999999877554321 111112 2479999999999954210 0 1111
Q ss_pred HHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 527 EKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 527 ~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
..+ ...+..++.+||+++.|+..++..|...+...
T Consensus 71 ~~~-~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 71 KYF-EEKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHH-HHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 122 22456788999999999999999988877543
No 402
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.96 E-value=2.4e-05 Score=70.75 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=51.0
Q ss_pred hHhhccCCCEEEEEEeCCChhcHH--HHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC
Q psy8073 458 TKNYFRRADGVMLLYDVTNERSFN--SVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA 535 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~ 535 (593)
....+..||++|+|+|+.++.+.. .+..|+. ... .++|+++|+||+|+..... ...........+.
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~~-~~k~~iivlNK~DL~~~~~--------~~~~~~~~~~~~~ 72 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVK---EVD-PRKKNILLLNKADLLTEEQ--------RKAWAEYFKKEGI 72 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hcc-CCCcEEEEEechhcCCHHH--------HHHHHHHHHhcCC
Confidence 456678999999999999887654 3333332 221 3589999999999954310 1122233344566
Q ss_pred eEEEEcCCCCC
Q psy8073 536 IFMETSSKSGD 546 (593)
Q Consensus 536 ~~~e~Sa~~g~ 546 (593)
.++++||++|.
T Consensus 73 ~ii~iSa~~~~ 83 (141)
T cd01857 73 VVVFFSALKEN 83 (141)
T ss_pred eEEEEEecCCC
Confidence 78999999875
No 403
>KOG3887|consensus
Probab=97.96 E-value=4.2e-05 Score=72.80 Aligned_cols=169 Identities=19% Similarity=0.253 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh-h-h-hhHhhccCCCEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF-R-S-MTKNYFRRADGVM 469 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~-~-~-~~~~~~~~ad~vi 469 (593)
++|+++|...+||||+-...+.+-. +..+-.+..+-....-.+.+.-+.+++||.|||-.+ . + -....++++-+.|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC-CCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 5699999999999998877665542 111111100000001112223367999999998655 1 1 1245689999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHc--CCCCcEEEEEeCCCCCC-ccccccccccCHHHHHHHHHH----hCCeEEEEcC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVT--ENSIPIVICANKVDLRA-DAQAKGVKCIDREVGEKLAQQ----YGAIFMETSS 542 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~piivV~NK~Dl~~-~~~~~~~~~v~~~~~~~l~~~----~~~~~~e~Sa 542 (593)
+|+|+-+.- .+.+..+...+...- ..++.+=|.+.|.|-.. .....+.+.+.......++.. ..+.|+-+|.
T Consensus 107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 999997532 223333332333222 24577889999999543 333333444444444444432 2345666664
Q ss_pred CCCCCHHHHHHHHHHHHHhhcc
Q psy8073 543 KSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
..+.|-+.|..+++.+.++.|
T Consensus 186 -yDHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 -YDHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred -cchHHHHHHHHHHHHHhhhch
Confidence 456777777777666654433
No 404
>KOG0463|consensus
Probab=97.95 E-value=3.7e-05 Score=77.40 Aligned_cols=117 Identities=17% Similarity=0.242 Sum_probs=66.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccc------------------cCCCCccc-----eee---------------EEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFL------------------NKLGSTLG-----VDF---------------QMK 432 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~------------------~~~~~t~g-----~~~---------------~~~ 432 (593)
-.++|++||...+|||||+-.|+.++.. ....+.+| .|. +..
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 3579999999999999999877654211 11111122 111 111
Q ss_pred EEEECCeeEEEEEEecCCchhhhhhhHhhc--cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 433 TIRVDERNVALQLWDTAGQERFRSMTKNYF--RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 433 ~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
.+ .......++|+|.||+|+|-..+--.+ .-.|..++++-++...--- ..+.+... ..-.+|+++|.+|+|..
T Consensus 212 kI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGm-TKEHLgLA---LaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGM-TKEHLGLA---LALHVPVFVVVTKIDMC 286 (641)
T ss_pred ee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceec-cHHhhhhh---hhhcCcEEEEEEeeccC
Confidence 11 111223488999999999844332222 2357888888776432110 01111111 12248999999999987
Q ss_pred Cc
Q psy8073 511 AD 512 (593)
Q Consensus 511 ~~ 512 (593)
..
T Consensus 287 PA 288 (641)
T KOG0463|consen 287 PA 288 (641)
T ss_pred cH
Confidence 54
No 405
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.94 E-value=1.1e-05 Score=51.43 Aligned_cols=28 Identities=43% Similarity=0.749 Sum_probs=18.9
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHc
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTG 32 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~ 32 (593)
+++++|+.+|+|++|+|+.+|+..+|+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4566677777777777777777766654
No 406
>PRK14974 cell division protein FtsY; Provisional
Probab=97.92 E-value=3.6e-05 Score=79.47 Aligned_cols=145 Identities=21% Similarity=0.197 Sum_probs=79.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcC----cccc-----C------------CCCccceeeEEEEEEE-------------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKE----VFLN-----K------------LGSTLGVDFQMKTIRV------------- 436 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~----~~~~-----~------------~~~t~g~~~~~~~~~~------------- 436 (593)
+...|+++|++||||||++..|... .+.. . +....|..+.......
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3578999999999999988777532 1100 0 0011222222111000
Q ss_pred CCeeEEEEEEecCCchhh----hhhhHhh--ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 437 DERNVALQLWDTAGQERF----RSMTKNY--FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 437 ~~~~~~~~l~DTaG~e~~----~~~~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
...++.+.|+||||.-.. ..-...+ ....|.+++|+|++.... .......+.... .+--+|+||.|..
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~---~~~giIlTKlD~~ 292 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV---GIDGVILTKVDAD 292 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC---CCCEEEEeeecCC
Confidence 011245899999994321 1111222 236789999999976432 111111222111 2346889999985
Q ss_pred CccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q psy8073 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALI 553 (593)
Q Consensus 511 ~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~ 553 (593)
.... ..-.++...+.|+.+++ +|.+++++..
T Consensus 293 ~~~G----------~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 293 AKGG----------AALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCcc----------HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 4311 12234445677887777 7999988764
No 407
>KOG0467|consensus
Probab=97.92 E-value=2.2e-05 Score=85.65 Aligned_cols=116 Identities=19% Similarity=0.303 Sum_probs=79.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCc------------ccc--CCCCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEV------------FLN--KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~------------~~~--~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
....-+|+|+.+..-|||||...|+... |.. ....+-|.+.....+..-..++.+.|+|+||+-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 3445589999999999999999986542 111 11223343333333333335688999999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCC
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVD 508 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~D 508 (593)
.+......+-+|++++++|+..+...+... .+.+.-..+...|+|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~----vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYA----VLRQAWIEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHH----HHHHHHHccCceEEEEehhh
Confidence 888888999999999999998765444432 22222223456789999999
No 408
>KOG0466|consensus
Probab=97.90 E-value=1e-05 Score=79.38 Aligned_cols=113 Identities=21% Similarity=0.170 Sum_probs=73.5
Q ss_pred EEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccccc
Q psy8073 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCI 521 (593)
Q Consensus 442 ~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v 521 (593)
.+.|+|+||++-..........-.|++++++..+.+...-...+.+..+..+.. ..+|++-||+||..... ..-
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L--khiiilQNKiDli~e~~----A~e 199 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL--KHIIILQNKIDLIKESQ----ALE 199 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh--ceEEEEechhhhhhHHH----HHH
Confidence 477999999987755554445556888888877643222112222223333332 46899999999976421 111
Q ss_pred CHHHHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 522 DREVGEKLAQQ---YGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 522 ~~~~~~~l~~~---~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
..+.+.+|.+. -+++++++||--+.||+.+.+.|+..+.
T Consensus 200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 23344455443 3568999999999999999999988775
No 409
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.90 E-value=3.9e-05 Score=92.36 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCC------CCccceeeEEEEEEECCeeEEEEEEecCC----ch----hhhhh
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKL------GSTLGVDFQMKTIRVDERNVALQLWDTAG----QE----RFRSM 457 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG----~e----~~~~~ 457 (593)
-+=.+|+|++|+||||+|+.- +-.|+-.. ...+|-+.. ....+.. ...++||+| ++ .....
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHH
Confidence 345789999999999999976 33332211 111221221 1222222 356999999 21 11122
Q ss_pred hHhh---------ccCCCEEEEEEeCCChhc---------HHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 458 TKNY---------FRRADGVMLLYDVTNERS---------FNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 458 ~~~~---------~~~ad~vi~v~D~~~~~s---------~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
+..+ -+..|+||+++|+.+-.. -..++..+.++....+..+||.||++|||+..
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 2222 245899999999875321 13455566677766677899999999999864
No 410
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.89 E-value=1.2e-05 Score=73.60 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc--cCCCCc----cceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL--NKLGST----LGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~--~~~~~t----~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
-.++++|++|||||||+|.|++.... +..+.. --++.....+.++.+ ..|+||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 47999999999999999999887211 111111 112334445556442 468999996554
No 411
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.88 E-value=0.0001 Score=78.23 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=63.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc------Ccc---ccC------------CCCccceeeEEEEEEEC-------------
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSK------EVF---LNK------------LGSTLGVDFQMKTIRVD------------- 437 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~------~~~---~~~------------~~~t~g~~~~~~~~~~~------------- 437 (593)
...|+++|.+||||||++..|.. ..+ ..+ +....+.++......-+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999862 111 111 11113333332111001
Q ss_pred CeeEEEEEEecCCchhh----hhhhHh--hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 438 ERNVALQLWDTAGQERF----RSMTKN--YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 438 ~~~~~~~l~DTaG~e~~----~~~~~~--~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
..++.+.|+||||.-.. ...... .....|-+++|+|++....-.+ ....+... -.+--+|+||.|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCCC
Confidence 02467899999993211 111111 1235789999999976532221 22222221 135678999999753
No 412
>KOG0044|consensus
Probab=97.87 E-value=2.1e-05 Score=73.96 Aligned_cols=64 Identities=31% Similarity=0.573 Sum_probs=47.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHc----CC---CC-----HH-HHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTG----FD---IQ-----PT-DSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~----l~---l~-----~~-e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
++.++=+|++||.||+|+|+..++-.++.+ .| .+ +. -++.+|..+|.|+||.||++||..+...
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 566777788888888888888888777762 12 11 22 3458888888888888888888888653
No 413
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.87 E-value=1.9e-05 Score=78.43 Aligned_cols=58 Identities=28% Similarity=0.323 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc--cCCCCc----cceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL--NKLGST----LGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~--~~~~~t----~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
-.++|+|.+|||||||+|+|++.... +..+.. ..+|.....+.+++ ..|+||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 37899999999999999999976311 112111 11344444455543 268999996544
No 414
>KOG0031|consensus
Probab=97.86 E-value=4.6e-05 Score=67.33 Aligned_cols=65 Identities=25% Similarity=0.462 Sum_probs=60.4
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+++.+..+|..||.+++|.|..+.|+.+|...| +++++++.||..+-.|..|.++|..|+.++.+
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 367899999999999999999999999999776 89999999999999999999999999998863
No 415
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.85 E-value=5.9e-05 Score=76.86 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=66.6
Q ss_pred cCCchhh-hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHH
Q psy8073 448 TAGQERF-RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVG 526 (593)
Q Consensus 448 TaG~e~~-~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~ 526 (593)
.|||..- .......+..||+||+|+|+.++.+..+. .+...+ . +.|+++|.||+|+.+.. ......
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~-~l~~~~----~-~kp~iiVlNK~DL~~~~-------~~~~~~ 73 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP-MIDKII----G-NKPRLLILNKSDLADPE-------VTKKWI 73 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh-hHHHHh----C-CCCEEEEEEchhcCCHH-------HHHHHH
Confidence 5675432 44466778899999999999887654321 111111 2 48999999999995420 001111
Q ss_pred HHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 527 EKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 527 ~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
..+ ...+..++.+||+++.|+..++..|...+...
T Consensus 74 ~~~-~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 74 EYF-EEQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHH-HHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 112 23356788999999999999999888877543
No 416
>KOG0464|consensus
Probab=97.85 E-value=6.7e-06 Score=83.48 Aligned_cols=120 Identities=22% Similarity=0.274 Sum_probs=93.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC----cccc--CCCC----------ccceeeEEEEEEECCeeEEEEEEecCCch
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE----VFLN--KLGS----------TLGVDFQMKTIRVDERNVALQLWDTAGQE 452 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~----~~~~--~~~~----------t~g~~~~~~~~~~~~~~~~~~l~DTaG~e 452 (593)
+.+--+|.|+....+||||.-.+++.- ...+ ..+. .-|.++....+++|..++.+.++||||+.
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 445568999999999999999887532 1111 1112 24778888888999999999999999999
Q ss_pred hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 453 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
.|+--...+++--|+++.|||++.+..-+.+.-|.+. ...++|-+..+||+|....
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhh
Confidence 9987788889999999999999987766777667653 3456899999999997543
No 417
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.80 E-value=2.5e-05 Score=50.79 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=26.4
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHH-cCC
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCT-GFD 34 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~-~l~ 34 (593)
+++.+|..||+|++|+|+..||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999998 665
No 418
>PLN02964 phosphatidylserine decarboxylase
Probab=97.80 E-value=9.2e-05 Score=82.03 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=52.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC-CCHHH-----HHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD-IQPTD-----SDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~-l~~~e-----~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.++++++|..+|+|++|+| ++.+++.+| ..+++ ++.+|..+|.|++|.|+|+||+.+|..
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 3578999999999999997 999999999 35554 468999999999999999999999864
No 419
>KOG0037|consensus
Probab=97.80 E-value=0.00057 Score=64.36 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=96.4
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHH---cCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCT---GFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~---~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..+...|...|+|+.|+|+.+||+.++. .-+++++-+.-|+..+|.+.+|+|.|.||...+..+-. -...
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~-------Wr~v 129 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ-------WRNV 129 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH-------HHHH
Confidence 4678899999999999999999999987 33588999999999999999999999999998765411 0011
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVKRLHED 160 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~~i~~~~~e 160 (593)
+...+... .+.....+++..++.+|=.. +++=+.-|.... +.. -..-..|.+||...+.
T Consensus 130 F~~~D~D~---SG~I~~sEL~~Al~~~Gy~L-------spq~~~~lv~ky--d~~-~~g~i~FD~FI~ccv~-------- 188 (221)
T KOG0037|consen 130 FRTYDRDR---SGTIDSSELRQALTQLGYRL-------SPQFYNLLVRKY--DRF-GGGRIDFDDFIQCCVV-------- 188 (221)
T ss_pred HHhcccCC---CCcccHHHHHHHHHHcCcCC-------CHHHHHHHHHHh--ccc-cCCceeHHHHHHHHHH--------
Confidence 11112211 12222345888888888554 444455556666 221 1444578888876554
Q ss_pred HHHHHHHHHHHHHH
Q psy8073 161 NEKLEEMFNREREV 174 (593)
Q Consensus 161 ~e~le~~l~r~~~~ 174 (593)
..+|..+.++....
T Consensus 189 L~~lt~~Fr~~D~~ 202 (221)
T KOG0037|consen 189 LQRLTEAFRRRDTA 202 (221)
T ss_pred HHHHHHHHHHhccc
Confidence 45555566655433
No 420
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.77 E-value=0.00011 Score=74.16 Aligned_cols=96 Identities=23% Similarity=0.177 Sum_probs=55.9
Q ss_pred eEEEEEEecCCchhhhhh----hH---hh-----ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCC
Q psy8073 440 NVALQLWDTAGQERFRSM----TK---NY-----FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~----~~---~~-----~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~ 507 (593)
++.+.|+||||....... .. .. -..+|.+++|+|++.. ...+. +...+.... .+.-+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---CCCEEEEEcc
Confidence 367899999994322111 11 11 1248999999999753 23332 222222211 2457899999
Q ss_pred CCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q psy8073 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALI 553 (593)
Q Consensus 508 Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~ 553 (593)
|..... -..-.+....+.|+.+++ +|.+++++..
T Consensus 228 De~~~~----------G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 228 DGTAKG----------GIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCCCCc----------cHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 985431 122234456678877777 7888877653
No 421
>KOG1547|consensus
Probab=97.72 E-value=0.00027 Score=67.44 Aligned_cols=114 Identities=19% Similarity=0.302 Sum_probs=64.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccC---------CCCccceeeEEEEEEECCeeEEEEEEecCC-----------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNK---------LGSTLGVDFQMKTIRVDERNVALQLWDTAG----------- 450 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~---------~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG----------- 450 (593)
-.++|.|||.+|.|||||+|.|+...+... +..|.......-.+.-++....+.++||||
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 347999999999999999999987633221 111211112222223355567788999999
Q ss_pred --chhh-hhh------------hHhhc--cCCCEEEEEEeCCChhcH--HHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 451 --QERF-RSM------------TKNYF--RRADGVMLLYDVTNERSF--NSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 451 --~e~~-~~~------------~~~~~--~~ad~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
+..| +.. +...+ ...+++++.+..+. .++ .++. ++..+.. -+.+|-|+-|+|-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDie-flkrLt~----vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIE-FLKRLTE----VVNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHH-HHHHHhh----hheeeeeEeecccc
Confidence 1222 111 11122 24678888777753 222 2222 2222222 25678889999954
No 422
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.69 E-value=0.00019 Score=58.84 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=52.2
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHH-cCC------CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCT-GFD------IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~-~l~------l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
.+-.+|+.|-. ..|.++..||+.++. +++ -+|..++.+|..+|.|+||.|+|.||+..+..+
T Consensus 9 ~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45678999973 457999999999997 443 457788999999999999999999999998765
No 423
>PRK13796 GTPase YqeH; Provisional
Probab=97.68 E-value=0.00022 Score=75.18 Aligned_cols=93 Identities=18% Similarity=0.325 Sum_probs=61.8
Q ss_pred hhhhhhhHhhccCCC-EEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHH----H
Q psy8073 452 ERFRSMTKNYFRRAD-GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREV----G 526 (593)
Q Consensus 452 e~~~~~~~~~~~~ad-~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~----~ 526 (593)
+.|..+.... ..+| +|++|+|+.+.. ..|...+..... +.|+++|+||+||... .+..+. .
T Consensus 57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-------~~~~~~i~~~l 122 (365)
T PRK13796 57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-------SVKKNKVKNWL 122 (365)
T ss_pred HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-------ccCHHHHHHHH
Confidence 4555544444 4455 999999998743 235555555443 5799999999999642 122222 2
Q ss_pred HHHHHHhCC---eEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 527 EKLAQQYGA---IFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 527 ~~l~~~~~~---~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
..+++..++ .++.+||++|.|+++++..|...
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 333455565 57899999999999999998654
No 424
>PRK00098 GTPase RsgA; Reviewed
Probab=97.67 E-value=6.8e-05 Score=76.75 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCcc-------ceeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL-------GVDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~-------g~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
+..++|+|++|||||||+|+|++... ...+... .++.....+.+++. ..|+||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 45799999999999999999987632 1111111 13344444445432 37899999654
No 425
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.67 E-value=6.1e-05 Score=47.97 Aligned_cols=28 Identities=32% Similarity=0.718 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 39 DSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 39 e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
++..+|+.+|.|+||+|+++||..+|..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4678999999999999999999999864
No 426
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.67 E-value=6.6e-05 Score=75.14 Aligned_cols=59 Identities=24% Similarity=0.274 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC------ccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKE------VFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~------~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
-..+++|.+|||||||+|+|... .++...+.---++....-+.+++++ .|+||||...|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 37899999999999999999864 1122221111134555666675433 57999996554
No 427
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.64 E-value=0.0012 Score=68.61 Aligned_cols=159 Identities=23% Similarity=0.315 Sum_probs=91.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccC--------------CCCcccee-------e---EEEEEEE-CCeeEEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK--------------LGSTLGVD-------F---QMKTIRV-DERNVALQ 444 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~--------------~~~t~g~~-------~---~~~~~~~-~~~~~~~~ 444 (593)
...+-|.||||.-+||||||.+|+.--+.+. +.+..|.+ | ....+.+ ++-.+.++
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 3458899999999999999999975422111 11111211 2 2233444 45578999
Q ss_pred EEecCC-------------chhhhhh----------------hHhhcc-CC-CEEEEEEeCCC----hhcHHHHHH-HHH
Q psy8073 445 LWDTAG-------------QERFRSM----------------TKNYFR-RA-DGVMLLYDVTN----ERSFNSVKN-WVE 488 (593)
Q Consensus 445 l~DTaG-------------~e~~~~~----------------~~~~~~-~a-d~vi~v~D~~~----~~s~~~~~~-~~~ 488 (593)
|+|+.| .+++... ++..+. ++ =++++.-|.+= +.++..+.. .+.
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 999999 1111100 111122 22 25555555542 334444332 444
Q ss_pred HHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 489 AVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 489 ~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
.++ .-++|+||+.|=.+-... -.......+...|++++++++|.. -.-+++..-|...|+
T Consensus 175 ELk---~igKPFvillNs~~P~s~--------et~~L~~eL~ekY~vpVlpvnc~~-l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 175 ELK---EIGKPFVILLNSTKPYSE--------ETQELAEELEEKYDVPVLPVNCEQ-LREEDITRILEEVLY 234 (492)
T ss_pred HHH---HhCCCEEEEEeCCCCCCH--------HHHHHHHHHHHHhCCcEEEeehHH-cCHHHHHHHHHHHHh
Confidence 444 445899999998876433 345667788899999999888753 344444444444444
No 428
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.62 E-value=9.5e-05 Score=75.30 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc--cCCC----CccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL--NKLG----STLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~--~~~~----~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
..++++|++|||||||+|.|++.... +... ...+++.....+.+.+. ..++||||...|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 57999999999999999999886321 1111 11124445555555532 258999998665
No 429
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.61 E-value=0.00013 Score=76.73 Aligned_cols=55 Identities=36% Similarity=0.569 Sum_probs=49.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
...++.+|..||.+++|+|+.+|+.. ++.+|..+|.|+||.|+++||..++...+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999842 57899999999999999999999998765
No 430
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.60 E-value=0.00021 Score=65.99 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKE 415 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~ 415 (593)
-++|+|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4689999999999999998765
No 431
>KOG0038|consensus
Probab=97.60 E-value=0.0001 Score=64.30 Aligned_cols=62 Identities=24% Similarity=0.457 Sum_probs=54.0
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcC---CCCHHHHH----HHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGF---DIQPTDSD----AIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~l~~~e~~----~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+..-+|.++|-|+|++|...||...+..+ +++++++. .++.++|.||||+|+|.+|-.+...
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 45568999999999999999999998855 58888864 8999999999999999999988754
No 432
>KOG0037|consensus
Probab=97.57 E-value=0.00021 Score=67.26 Aligned_cols=63 Identities=24% Similarity=0.461 Sum_probs=56.5
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
.-+.+|..||+|++|.|+..||+.+|..+| +++.-.+-|+...|.-++|.|.|++|+.++-..
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 457889999999999999999999999888 788888899999997779999999999997553
No 433
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.56 E-value=0.0002 Score=68.58 Aligned_cols=62 Identities=29% Similarity=0.375 Sum_probs=41.6
Q ss_pred EEEEec-CCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 443 LQLWDT-AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 443 ~~l~DT-aG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
+.++|| ||+|.|. +...+.+|++|+|+|.+- .|+...+.......... =.++.+|+||.|-.
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 667777 6777763 245678999999999974 34444443333333332 26899999999954
No 434
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.56 E-value=0.00098 Score=62.78 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=57.9
Q ss_pred eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccc
Q psy8073 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGV 518 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~ 518 (593)
..+.+.|+||||... ......+..||.+|+++..+ ..+...+..++..+... +.|+.+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~------ 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE------ 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc------
Confidence 346799999997432 23445678899999999987 44566666666666543 4688999999997432
Q ss_pred cccCHHHHHHHHHHhCCeEE
Q psy8073 519 KCIDREVGEKLAQQYGAIFM 538 (593)
Q Consensus 519 ~~v~~~~~~~l~~~~~~~~~ 538 (593)
......++...++.+++
T Consensus 159 ---~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 159 ---IAEEIEDYCEEEGIPIL 175 (179)
T ss_pred ---hHHHHHHHHHHcCCCeE
Confidence 13345556666777654
No 435
>PRK13695 putative NTPase; Provisional
Probab=97.55 E-value=0.0013 Score=61.62 Aligned_cols=146 Identities=17% Similarity=0.275 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc----cc--cC-------CCCccceeeEEEEEEECCeeEEEE-------------EE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEV----FL--NK-------LGSTLGVDFQMKTIRVDERNVALQ-------------LW 446 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~----~~--~~-------~~~t~g~~~~~~~~~~~~~~~~~~-------------l~ 446 (593)
++|+|+|.+|+|||||+..+.+.. +. +. .....|.+. ... .++....+. +.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 77 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKI--IDL-DTGEEGILARVGFPSRPRVGKYVV 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEE--EEc-CCCCeEEccccCCCCCCceeeEEE
Confidence 489999999999999999865431 10 00 011111111 111 011111111 22
Q ss_pred ecCCchhh-hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHH
Q psy8073 447 DTAGQERF-RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREV 525 (593)
Q Consensus 447 DTaG~e~~-~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~ 525 (593)
|..|.+.+ .......+..+++ +++|=-.+..... ..+...+......+.|+|+|.||..... .
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~~~-------------~ 141 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSVHP-------------F 141 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhhHH-------------H
Confidence 33333333 3334455667888 5777211111111 2344555555555689999999864321 1
Q ss_pred HHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 526 GEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 526 ~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
...+....++.++++ +..|-+++..++.+.++
T Consensus 142 ~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 142 VQEIKSRPGGRVYEL---TPENRDSLPFEILNRLK 173 (174)
T ss_pred HHHHhccCCcEEEEE---cchhhhhHHHHHHHHHh
Confidence 222334445566666 56677788888877653
No 436
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00059 Score=73.74 Aligned_cols=139 Identities=17% Similarity=0.219 Sum_probs=72.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--------cccCC---------------CCccceeeEEEEEE------E-CCe
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--------FLNKL---------------GSTLGVDFQMKTIR------V-DER 439 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--------~~~~~---------------~~t~g~~~~~~~~~------~-~~~ 439 (593)
..+-.|+|+|++|+||||++..|...- +.-.. ....|..+....-. + ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 456789999999999999998886421 00000 01112222111000 0 012
Q ss_pred eEEEEEEecCCchhhhh-----h--hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 440 NVALQLWDTAGQERFRS-----M--TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~-----~--~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
.+.+.|+||+|...... + .... . ....++|++.+. ++.++..++..+. .. .+.-+|+||.|....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~---~~-~~~gvILTKlDEt~~ 499 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFA---HA-KPQGVVLTKLDETGR 499 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHH---hh-CCeEEEEecCcCccc
Confidence 36789999999432211 1 1111 1 234567777763 3333333333332 22 466799999998542
Q ss_pred cccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 513 ~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
.-....+....+.++.+++ +|.+|
T Consensus 500 ----------lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 ----------FGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred ----------hhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 1122334445666666554 56666
No 437
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00048 Score=72.00 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=74.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcc--cc-CC-----CC---------------ccceeeEEEEEE-------ECCe
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVF--LN-KL-----GS---------------TLGVDFQMKTIR-------VDER 439 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~--~~-~~-----~~---------------t~g~~~~~~~~~-------~~~~ 439 (593)
..+-.|+|+|++||||||++.+|..... .+ .. .. ..|..+....-. ....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 3456889999999999999999875311 01 00 00 012222111100 0012
Q ss_pred eEEEEEEecCCchhh----hhhhHh--hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCC---C--CcEEEEEeCCC
Q psy8073 440 NVALQLWDTAGQERF----RSMTKN--YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN---S--IPIVICANKVD 508 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~----~~~~~~--~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~---~--~piivV~NK~D 508 (593)
...+.|+||+|...+ ...... ....+.-+++|++++... ..+...+..+...... . .+-=+|++|.|
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 356889999994322 111111 123345678999988643 2222222222222110 0 12347789999
Q ss_pred CCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 509 l~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
-.... -.+-.+....+.++.+++ +|.+|.+
T Consensus 293 Et~~~----------G~~l~~~~~~~lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 293 EASNL----------GGVLDTVIRYKLPVHYVS--TGQKVPE 322 (374)
T ss_pred cCCCc----------cHHHHHHHHHCcCeEEEe--cCCCCCc
Confidence 75431 112234455566665554 5666655
No 438
>KOG0030|consensus
Probab=97.49 E-value=0.00025 Score=61.69 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=54.9
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
+-+.|-+.++.||++++|+|...+|+.+|..+| ++.++++.++.-. .|.+|.|+|+.|+..+
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 456788899999999999999999999999888 8999999988876 3778999999998654
No 439
>KOG0459|consensus
Probab=97.47 E-value=0.00012 Score=74.65 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=97.0
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHhcCc--c---------------------c------cCCCCccceeeEEEEEEE
Q psy8073 386 TGEPDRAFKIVFAGDAAVGKSCFIYRFSKEV--F---------------------L------NKLGSTLGVDFQMKTIRV 436 (593)
Q Consensus 386 ~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~--~---------------------~------~~~~~t~g~~~~~~~~~~ 436 (593)
+..+...++++++|...+||||+-..++.-. + . ..-...-|.+.......+
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 3456788999999999999999876654210 0 0 000111233344444444
Q ss_pred CCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh---cHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCc
Q psy8073 437 DERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER---SFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRAD 512 (593)
Q Consensus 437 ~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~ 512 (593)
......+.|.|+||+-.|..-...-..+||+.++|+++.... .|+.--+-......... .-...|+++||+|-...
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 444567999999999999666666778999999999985321 23221111111111111 12467899999996543
Q ss_pred cccccccccCHHHHHHHHHHhC------CeEEEEcCCCCCCHHHHHH
Q psy8073 513 AQAKGVKCIDREVGEKLAQQYG------AIFMETSSKSGDNILDALI 553 (593)
Q Consensus 513 ~~~~~~~~v~~~~~~~l~~~~~------~~~~e~Sa~~g~gi~~l~~ 553 (593)
.....+..-..+....+....| ..|++||..+|.++.+...
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1111111111122222223222 3599999999999977654
No 440
>KOG4251|consensus
Probab=97.47 E-value=0.00023 Score=67.44 Aligned_cols=66 Identities=24% Similarity=0.384 Sum_probs=52.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHc-----CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTG-----FDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-----l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
...+..+|...|.+-||+|+..+++...+. +.-.-++....|...|+|+||.|+|+||..-|....
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlask 170 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASK 170 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhc
Confidence 457899999999999999999999988772 122223344678889999999999999988876543
No 441
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.00077 Score=70.23 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCc------c---ccC------------CCCccceeeEEEEEE------E---C-Cee
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEV------F---LNK------------LGSTLGVDFQMKTIR------V---D-ERN 440 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~------~---~~~------------~~~t~g~~~~~~~~~------~---~-~~~ 440 (593)
...|+|+|++||||||++..|...- + ..+ +....|.++....-. + . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3589999999999999999986421 0 000 111122222211000 0 0 012
Q ss_pred EEEEEEecCCchhh----hhhhHhhc--cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 441 VALQLWDTAGQERF----RSMTKNYF--RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 441 ~~~~l~DTaG~e~~----~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
+.+.|+||||.... ......++ ...+.+++|+|++... .++..+...+.. . .+-=+|++|.|-....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---~-~idglI~TKLDET~k~- 393 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---I-HIDGIVFTKFDETASS- 393 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---C-CCCEEEEEcccCCCCc-
Confidence 56899999994221 11112222 2457788999986332 333333333332 1 1235789999975431
Q ss_pred cccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
-.+-.++...+.|+.+++ +|.+|.+=+
T Consensus 394 ---------G~iLni~~~~~lPIsyit--~GQ~VPeDI 420 (436)
T PRK11889 394 ---------GELLKIPAVSSAPIVLMT--DGQDVKKNI 420 (436)
T ss_pred ---------cHHHHHHHHHCcCEEEEe--CCCCCCcch
Confidence 122334556677765554 576665544
No 442
>KOG2485|consensus
Probab=97.45 E-value=0.00012 Score=72.69 Aligned_cols=62 Identities=26% Similarity=0.425 Sum_probs=47.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC----ccccCCCCccceeeEEEE-EEECCeeEEEEEEecCCc
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE----VFLNKLGSTLGVDFQMKT-IRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~----~~~~~~~~t~g~~~~~~~-~~~~~~~~~~~l~DTaG~ 451 (593)
....+.|.|+|-||||||||+|++-.. .-...++.-+|++..+.. +.+.... .+.+.||||+
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 456799999999999999999987542 234567778888887776 5554433 5889999993
No 443
>PRK01889 GTPase RsgA; Reviewed
Probab=97.44 E-value=0.00057 Score=71.69 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=57.5
Q ss_pred hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-HhCCeEEE
Q psy8073 461 YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-QYGAIFME 539 (593)
Q Consensus 461 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-~~~~~~~e 539 (593)
.+.++|.+++|+++..+.....+..++..+.. .++|.+||+||+||.+.. ......+.. ..+.+++.
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---------~~~~~~~~~~~~g~~Vi~ 176 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---------EEKIAEVEALAPGVPVLA 176 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---------HHHHHHHHHhCCCCcEEE
Confidence 36789999999999755554455555444433 347889999999996431 011112221 34678899
Q ss_pred EcCCCCCCHHHHHHHHH
Q psy8073 540 TSSKSGDNILDALIALS 556 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~ 556 (593)
+||++|.|++++..+|.
T Consensus 177 vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 177 VSALDGEGLDVLAAWLS 193 (356)
T ss_pred EECCCCccHHHHHHHhh
Confidence 99999999999888874
No 444
>PLN02964 phosphatidylserine decarboxylase
Probab=97.41 E-value=0.0004 Score=77.09 Aligned_cols=62 Identities=23% Similarity=0.438 Sum_probs=57.2
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 6 LEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 6 l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
++++|..+|.|++|.|+.+||..+|..++ .+.+++..+|..+|.|++|+|+++||..++..+
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 78999999999999999999999999776 566778999999999999999999999998774
No 445
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.40 E-value=0.00092 Score=62.59 Aligned_cols=67 Identities=24% Similarity=0.236 Sum_probs=38.2
Q ss_pred eEEEEEEecCCchh----hhhhhHhhc--cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 440 NVALQLWDTAGQER----FRSMTKNYF--RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 440 ~~~~~l~DTaG~e~----~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
+..+.|+||+|.-. .......+. ...|.+++|+|+..... ...+...+....+ ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCC
Confidence 35578899999632 211112222 34899999999864432 2233333332222 35677899998643
No 446
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0011 Score=70.55 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=79.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccc---cCC--------------------CCccceeeEEEEEE-------ECCee
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFL---NKL--------------------GSTLGVDFQMKTIR-------VDERN 440 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~---~~~--------------------~~t~g~~~~~~~~~-------~~~~~ 440 (593)
.+-.|+|+|++||||||++..|.+.... ... ....|..+....-. ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 4569999999999999999987653100 000 00112222111000 01122
Q ss_pred EEEEEEecCCchh----hhhhhHhhc--cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 441 VALQLWDTAGQER----FRSMTKNYF--RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 441 ~~~~l~DTaG~e~----~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
..+.|+||+|... .......+. ...+-+++|+|++.. ...+..++..+ ... -+-=+|++|.|-....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f---~~~-~~~~~I~TKlDEt~~~- 342 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAY---QGH-GIHGCIITKVDEAASL- 342 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHh---cCC-CCCEEEEEeeeCCCCc-
Confidence 4578999999322 111122221 234567889999843 23344333322 221 1235789999975431
Q ss_pred cccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH-HHHH----HHHHHHHHh
Q psy8073 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI-LDAL----IALSRHVYV 561 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi-~~l~----~~L~~~l~~ 561 (593)
-.+-.+....+.++.+++ +|.+| +++. ..|++.+..
T Consensus 343 ---------G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 343 ---------GIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred ---------cHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHHHhc
Confidence 122334556677766654 67777 3443 235555554
No 447
>KOG0377|consensus
Probab=97.37 E-value=0.00045 Score=70.79 Aligned_cols=65 Identities=28% Similarity=0.445 Sum_probs=57.2
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcC------CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGF------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l------~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+..+|+..|.|++|.|+.+||..++.-+ .++..++-++-..+|.++||.|+++||+.+|....
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 457789999999999999999999999833 36777888999999999999999999999998753
No 448
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.34 E-value=0.0013 Score=70.50 Aligned_cols=134 Identities=21% Similarity=0.216 Sum_probs=70.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcC------cc---c-cCCCC-----------ccceeeEEEEEEEC-----------C
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKE------VF---L-NKLGS-----------TLGVDFQMKTIRVD-----------E 438 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~------~~---~-~~~~~-----------t~g~~~~~~~~~~~-----------~ 438 (593)
....|+++|.+|+||||++..|... .+ . +.+.+ ..|.++.......+ .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4568999999999999999887532 00 0 00001 12222222110000 0
Q ss_pred eeEEEEEEecCCchhhh-----hhh-HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCC
Q psy8073 439 RNVALQLWDTAGQERFR-----SMT-KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRA 511 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~~-----~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~ 511 (593)
....+.|+||||.-... .+. ...+..+|.+++|+|++... +.......+.. .++ .-+|.||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~----~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE----AVGIGGIIITKLDGTA 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh----cCCCCEEEEecccCCC
Confidence 12368999999943221 111 11234689999999997652 22222222221 133 357889999754
Q ss_pred ccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 512 ~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
.. --+-.+....+.|+.+++
T Consensus 247 ~~----------G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 KG----------GGALSAVAETGAPIKFIG 266 (437)
T ss_pred cc----------cHHHHHHHHHCcCEEEEe
Confidence 31 112234455666666555
No 449
>KOG0044|consensus
Probab=97.30 E-value=0.00048 Score=64.91 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH
Q psy8073 121 KKLADLYHELRTSSNCPEIVTHFEGALSSLLDD 153 (593)
Q Consensus 121 eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~~ 153 (593)
+-+..+|+.+ +.+ ..+..++|+|+.....+
T Consensus 147 ~~v~~if~k~--D~n-~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 147 ERVDKIFSKM--DKN-KDGKLTLEEFIEGCKAD 176 (193)
T ss_pred HHHHHHHHHc--CCC-CCCcccHHHHHHHhhhC
Confidence 3567778878 443 34566788888765543
No 450
>KOG0036|consensus
Probab=97.29 E-value=0.0019 Score=66.19 Aligned_cols=112 Identities=21% Similarity=0.301 Sum_probs=75.1
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCC--HHH-HHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ--PTD-SDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNV 79 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~--~~e-~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~ 79 (593)
+-+++.+|..||.+++|+|+..++...+..++.+ +.+ ...+|..+|.|.||+++|.||..-+...- .....
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E------~~l~~ 86 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE------LELYR 86 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH------HHHHH
Confidence 3478999999999999999999999999977755 233 44899999999999999999998876531 11111
Q ss_pred cCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHH
Q psy8073 80 NAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHEL 130 (593)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l 130 (593)
-|...+.... +...++ ++...+..+|... +.+++..++...
T Consensus 87 ~F~~iD~~hd--G~i~~~-Ei~~~l~~~gi~l-------~de~~~k~~e~~ 127 (463)
T KOG0036|consen 87 IFQSIDLEHD--GKIDPN-EIWRYLKDLGIQL-------SDEKAAKFFEHM 127 (463)
T ss_pred HHhhhccccC--CccCHH-HHHHHHHHhCCcc-------CHHHHHHHHHHh
Confidence 1222222211 111222 2334445666655 666777777666
No 451
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00047 Score=80.97 Aligned_cols=117 Identities=17% Similarity=0.197 Sum_probs=66.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC-ccccCC----CCccceeeEEEEEEECCeeEEEEEEecCC----ch----hhhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE-VFLNKL----GSTLGVDFQMKTIRVDERNVALQLWDTAG----QE----RFRS 456 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~-~~~~~~----~~t~g~~~~~~~~~~~~~~~~~~l~DTaG----~e----~~~~ 456 (593)
..-+=-+|+|+||+||||++..--.. .+.... ...+| |.. ..-.+.. .-.++||+| ++ .-..
T Consensus 123 yeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~-cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~ 197 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRN-CDWWFTD---EAVLIDTAGRYITQDSADEVDRA 197 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-Ccc-cCccccc---ceEEEcCCcceecccCcchhhHH
Confidence 33445678899999999998753222 111111 11111 111 1111222 467899999 21 1111
Q ss_pred hhH---------hhccCCCEEEEEEeCCChhc---------HHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 457 MTK---------NYFRRADGVMLLYDVTNERS---------FNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 457 ~~~---------~~~~~ad~vi~v~D~~~~~s---------~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
.+. .-.+.-|+||+++|+.+-.+ ...++.=+.++...-....||.|++||.|+..
T Consensus 198 ~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 198 EWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 122 22456799999999865211 12233334455555567799999999999975
No 452
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.24 E-value=0.0012 Score=60.15 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=35.5
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCC
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVD 508 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~D 508 (593)
.+-+.|+||||.... ...++..||.+|+|...+-.+.+.-+. + ..+ . .-=++|+||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k-~-~~~-~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK-A-GIM-E-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh-h-hHh-h-----hcCEEEEeCCC
Confidence 356889999996532 234788999999988776322222111 1 111 1 12278999998
No 453
>KOG3859|consensus
Probab=97.21 E-value=0.0015 Score=63.75 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=42.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCc--cceeeEEEEEEE--CCeeEEEEEEecCC
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGST--LGVDFQMKTIRV--DERNVALQLWDTAG 450 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t--~g~~~~~~~~~~--~~~~~~~~l~DTaG 450 (593)
-.++|+-||.+|.|||||+..|++..|...+++- +++.....+..+ .+..+.++|+||+|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 3589999999999999999999998765544332 233333333333 34457889999999
No 454
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.17 E-value=0.0021 Score=67.00 Aligned_cols=113 Identities=20% Similarity=0.311 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccC-----------------------CCCccceeeEEEEEEE-------CCeeE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNK-----------------------LGSTLGVDFQMKTIRV-------DERNV 441 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~-----------------------~~~t~g~~~~~~~~~~-------~~~~~ 441 (593)
+-.|++|||+||||||-+-.|...-+... |....|+++....-.- ....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56899999999999999988754422000 1111222222111100 11224
Q ss_pred EEEEEecCCchhh----hhhhHhhccC--CCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcE-EEEEeCCCCCC
Q psy8073 442 ALQLWDTAGQERF----RSMTKNYFRR--ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPI-VICANKVDLRA 511 (593)
Q Consensus 442 ~~~l~DTaG~e~~----~~~~~~~~~~--ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivV~NK~Dl~~ 511 (593)
.+.|+||+|...+ ......++.. ..-+.+|++++.. ..++...+..+ .. +|+ =++++|.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f---~~--~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQF---SL--FPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHh---cc--CCcceeEEEcccccC
Confidence 5899999994322 2333444433 3455577777743 34555433333 33 232 46789999754
No 455
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.17 E-value=0.0011 Score=61.67 Aligned_cols=135 Identities=20% Similarity=0.355 Sum_probs=67.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEec-CC----------------------
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDT-AG---------------------- 450 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DT-aG---------------------- 450 (593)
+|.|.|+||+|||||+++++..-- ....+. .-|....+.-++..+-+.+.|. .|
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999875421 001122 2233344444444455555555 22
Q ss_pred chhhhhh----hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCC-CCCCccccccccccCHHH
Q psy8073 451 QERFRSM----TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV-DLRADAQAKGVKCIDREV 525 (593)
Q Consensus 451 ~e~~~~~----~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~-Dl~~~~~~~~~~~v~~~~ 525 (593)
.+.|... ....+..+| |+|+|=--+.-+ ....|...+...-..+.|+|.|+-+. +.. .
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~~--------------~ 140 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDNP--------------F 140 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--SC--------------C
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCcH--------------H
Confidence 1222211 112224566 566663211111 11235555666555678999998777 432 2
Q ss_pred HHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 526 GEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 526 ~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
...+....++.+++++..+..-+
T Consensus 141 l~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 141 LEEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp HHHHHTTTTSEEEE--TTTCCCH
T ss_pred HHHHHhCCCcEEEEeChhHHhhH
Confidence 34466666788888876665544
No 456
>KOG1955|consensus
Probab=97.17 E-value=0.00065 Score=70.49 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=60.8
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~ 69 (593)
+-|-..|+..-.|-.|||+..--+.+|....++-.++.+||...|.|.||.|++.||+.+|+.+..
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVa 296 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVA 296 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheee
Confidence 346678899999999999999999999999999999999999999999999999999999988754
No 457
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.00091 Score=70.53 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=73.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCc-------c---ccC------------CCCccceeeEEEEE------EECCeeEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEV-------F---LNK------------LGSTLGVDFQMKTI------RVDERNVAL 443 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~-------~---~~~------------~~~t~g~~~~~~~~------~~~~~~~~~ 443 (593)
+..|+|+|++||||||++..|.... + ..+ +....|.++..... .+...++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4578899999999999999986421 0 000 01122333321100 001123568
Q ss_pred EEEecCCchhh----hhhhHhhcc-----CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 444 QLWDTAGQERF----RSMTKNYFR-----RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 444 ~l~DTaG~e~~----~~~~~~~~~-----~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
.|+||||.... ......++. ...-+++|+|++... .++....... ..- -+-=+|++|.|-.....
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f---~~~-~~~glIlTKLDEt~~~G 376 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY---ESL-NYRRILLTKLDEADFLG 376 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh---cCC-CCCEEEEEcccCCCCcc
Confidence 99999994311 111222221 234678999988653 2333222222 221 12357899999754311
Q ss_pred cccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q psy8073 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~ 552 (593)
.+-.++...+.|+..++ +|.+|.+=+
T Consensus 377 ----------~il~i~~~~~lPI~ylt--~GQ~VPeDi 402 (432)
T PRK12724 377 ----------SFLELADTYSKSFTYLS--VGQEVPFDI 402 (432)
T ss_pred ----------HHHHHHHHHCCCEEEEe--cCCCCCCCH
Confidence 12334556677766554 465554433
No 458
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.15 E-value=0.00052 Score=42.05 Aligned_cols=24 Identities=42% Similarity=0.765 Sum_probs=16.1
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHH
Q psy8073 6 LEELFKTCDKKGTGQIGPEEFREL 29 (593)
Q Consensus 6 l~~~F~~~D~d~~G~I~~~el~~~ 29 (593)
++.+|..+|.|+||.|+..|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 355677777777777777776654
No 459
>KOG0036|consensus
Probab=97.14 E-value=0.00084 Score=68.72 Aligned_cols=65 Identities=22% Similarity=0.493 Sum_probs=58.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
+.++..+|+..|.++||.|..+|+...|+.+| ++.++++.+|+.+|.++++.|+++||...+...
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 56889999999999999999999999999777 678888899999999999999999998887543
No 460
>PRK10867 signal recognition particle protein; Provisional
Probab=97.13 E-value=0.003 Score=67.58 Aligned_cols=135 Identities=19% Similarity=0.156 Sum_probs=70.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc----C---ccc---cC-C-----------CCccceeeEEEEEEE-------------
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSK----E---VFL---NK-L-----------GSTLGVDFQMKTIRV------------- 436 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~----~---~~~---~~-~-----------~~t~g~~~~~~~~~~------------- 436 (593)
...|+++|++||||||++-.|.. . .+. .+ + ....|+++.......
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 46889999999999997766543 1 110 00 0 111233333221000
Q ss_pred CCeeEEEEEEecCCchh----hhhhhHh--hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 437 DERNVALQLWDTAGQER----FRSMTKN--YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 437 ~~~~~~~~l~DTaG~e~----~~~~~~~--~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
...++.+.|+||||.-. ....... ..-..+.+++|+|++.. +++..+...+.... ...-+|.||.|..
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~ 253 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGD 253 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCc
Confidence 11235689999999321 1111111 12256788999998754 33333333333211 1235778999964
Q ss_pred CccccccccccCHHHHHHHHHHhCCeEEEEcC
Q psy8073 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSS 542 (593)
Q Consensus 511 ~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa 542 (593)
.. .-.+..+....+.|+.+++.
T Consensus 254 ~r----------gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 254 AR----------GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred cc----------ccHHHHHHHHHCcCEEEEeC
Confidence 32 11234455666777666553
No 461
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0009 Score=69.49 Aligned_cols=142 Identities=17% Similarity=0.142 Sum_probs=73.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCc------c---ccC------------CCCccceeeEEEEEE---------EC-Ce
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEV------F---LNK------------LGSTLGVDFQMKTIR---------VD-ER 439 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~------~---~~~------------~~~t~g~~~~~~~~~---------~~-~~ 439 (593)
.+-.|+|+|++||||||++..|.... + ..+ +....|..+....-. .. ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45679999999999999999886421 0 000 111122222211000 00 02
Q ss_pred eEEEEEEecCCchh----hhhhhHhhcc--CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcc
Q psy8073 440 NVALQLWDTAGQER----FRSMTKNYFR--RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADA 513 (593)
Q Consensus 440 ~~~~~l~DTaG~e~----~~~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~ 513 (593)
.+.+.|+||||... .......+.. ..|.+++|.+++. ...++..++ ...... .+--+|+||.|-....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~---~~f~~l-~i~glI~TKLDET~~~ 358 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTIL---PKLAEI-PIDGFIITKMDETTRI 358 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHH---HhcCcC-CCCEEEEEcccCCCCc
Confidence 36789999999522 1111222222 4467777777642 223333322 222221 2335789999975431
Q ss_pred ccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 514 QAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 514 ~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
-.+-.++...+.|+.++| +|.+|.+
T Consensus 359 ----------G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 359 ----------GDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred ----------cHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 122334556677766665 5676665
No 462
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.0014 Score=65.63 Aligned_cols=143 Identities=16% Similarity=0.143 Sum_probs=76.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCcc---------cc------------CCCCccceeeEEEEEE---------E-CCe
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVF---------LN------------KLGSTLGVDFQMKTIR---------V-DER 439 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~---------~~------------~~~~t~g~~~~~~~~~---------~-~~~ 439 (593)
++-+|+|+|++|+||||++..+..... .. .+....|.++....-. + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 557999999999999999988754310 00 0111122222211000 0 112
Q ss_pred eEEEEEEecCCchhh----hhhhHhhc--cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcc
Q psy8073 440 NVALQLWDTAGQERF----RSMTKNYF--RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADA 513 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~----~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~ 513 (593)
++.+.|+||||.-.. ......++ ...|-+++|+|++... .++..+...+. .. .+-=+|++|.|-....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~---~~-~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFK---DI-HIDGIVFTKFDETASS 227 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhC---CC-CCCEEEEEeecCCCCc
Confidence 367899999994321 11111222 2457789999987432 33333333332 21 2335789999975431
Q ss_pred ccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 514 QAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 514 ~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
--+-.++...+.|+.+++ +|.+|.+=
T Consensus 228 ----------G~~l~~~~~~~~Pi~~it--~Gq~vp~d 253 (270)
T PRK06731 228 ----------GELLKIPAVSSAPIVLMT--DGQDVKKN 253 (270)
T ss_pred ----------cHHHHHHHHHCcCEEEEe--CCCCCCcc
Confidence 112234556677766554 57776643
No 463
>KOG4273|consensus
Probab=97.08 E-value=0.0052 Score=58.97 Aligned_cols=162 Identities=17% Similarity=0.248 Sum_probs=94.9
Q ss_pred eEEEEEcCCCC--cHHHHHHHHhcCccccCCCCccceeeEEEEE-----EECCeeEEEEEEecCCchhhhhhhHhhccCC
Q psy8073 393 FKIVFAGDAAV--GKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI-----RVDERNVALQLWDTAGQERFRSMTKNYFRRA 465 (593)
Q Consensus 393 ~kI~ivG~~nv--GKSSLln~l~~~~~~~~~~~t~g~~~~~~~~-----~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~a 465 (593)
+-++|+|..|| ||-+|+.+|....|.....+.-.+.|...++ ..+-.-....+.| +.|-. ........
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd----e~~lp-n~~~a~pl 79 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD----EKFLP-NAEIAEPL 79 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc----hhccC-Ccccccce
Confidence 46788999999 9999999998876655444333333333332 2221111122222 22211 11122345
Q ss_pred CEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc--------------c--c-------------
Q psy8073 466 DGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ--------------A--K------------- 516 (593)
Q Consensus 466 d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~--------------~--~------------- 516 (593)
-++++|||.+....+..+..|++.-....- --++.+|||.|.....- + .
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 688999999999888888889874332111 12467889999754310 0 0
Q ss_pred ---------cccccCHHHHHHHHHHhCCeEEEEcCCCC------------CCHHHHHHHHHHHHHh
Q psy8073 517 ---------GVKCIDREVGEKLAQQYGAIFMETSSKSG------------DNILDALIALSRHVYV 561 (593)
Q Consensus 517 ---------~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g------------~gi~~l~~~L~~~l~~ 561 (593)
...-..+.....|+...|+.|++.+|.+. .||+.+|.+|...+..
T Consensus 158 egssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp 223 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP 223 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence 00001122234566677888999988543 4899999888776653
No 464
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0073 Score=63.76 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=76.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCc----------ccc---------------CCCCccceeeEEEEEE-------ECCe
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEV----------FLN---------------KLGSTLGVDFQMKTIR-------VDER 439 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~----------~~~---------------~~~~t~g~~~~~~~~~-------~~~~ 439 (593)
+..|+++|++||||||.+..|...- +.- .+....|.++...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 3589999999999999998875321 000 0111233333221110 0112
Q ss_pred eEEEEEEecCCchhh----hhhhHhhccC--CC-EEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 440 NVALQLWDTAGQERF----RSMTKNYFRR--AD-GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~----~~~~~~~~~~--ad-~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
.+.+.|+||||.-.. ......++.. .+ -+++|+|++... .++... +...... .+-=+|++|.|-...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~---~~~~~~~-~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEI---FHQFSPF-SYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHH---HHHhcCC-CCCEEEEEeccCCCc
Confidence 367899999994221 1112223222 23 588999998652 333332 3333221 133578999997543
Q ss_pred cccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH-HHHH
Q psy8073 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI-LDAL 552 (593)
Q Consensus 513 ~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi-~~l~ 552 (593)
. -.+-.++...+.++..++ +|.+| +++.
T Consensus 328 ~----------G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 328 V----------GNLISLIYEMRKEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred c----------hHHHHHHHHHCCCEEEEe--CCCCChhhhh
Confidence 1 122234455666665554 67888 4444
No 465
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.07 E-value=0.097 Score=54.27 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhccCcccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 206 EQEKAILMRKMEHETQELQAHLNLFQKVNNVLKE-KKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKS 284 (593)
Q Consensus 206 e~~~~el~~~~e~e~~elq~~~~~~~~~e~~~~~-~~~~~~~~~~e~~~l~~en~~L~~~l~~~q~~l~~~~~el~~l~~ 284 (593)
...+.++.-++..+...|+..+..++.....+.. -..+...++.++..+..+...++.++.+.+.++..+..++..+..
T Consensus 172 ~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 172 LEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555544333331 123333344555555555555555555555555555444444444
No 466
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.07 E-value=0.0038 Score=59.77 Aligned_cols=140 Identities=21% Similarity=0.205 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc------cc---c------------CCCCccceeeEEEEEEE-------------CC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEV------FL---N------------KLGSTLGVDFQMKTIRV-------------DE 438 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~------~~---~------------~~~~t~g~~~~~~~~~~-------------~~ 438 (593)
..|++||++||||||.+-+|...- +. . .+...+|+++....... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 368999999999999998875421 00 0 01122344433211000 01
Q ss_pred eeEEEEEEecCCchhh----hhhhHhh--ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 439 RNVALQLWDTAGQERF----RSMTKNY--FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~----~~~~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
.++.+.|+||||.... ......+ ....+-+++|.|++.... .+..+.... ...+ +-=+|.+|.|....
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~~~-~~~~---~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALAFY-EAFG---IDGLILTKLDETAR 155 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHHHH-HHSS---TCEEEEESTTSSST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHHHh-hccc---CceEEEEeecCCCC
Confidence 1245899999993221 1111111 126788999999986543 333222222 2211 22467999997543
Q ss_pred cccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 513 ~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
. --.-.++...+.++..+| +|.+|++
T Consensus 156 ~----------G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 156 L----------GALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp T----------HHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred c----------ccceeHHHHhCCCeEEEE--CCCChhc
Confidence 1 123345566777776665 5666643
No 467
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.02 E-value=0.0059 Score=65.53 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcc--cc-C-----CC-C--------------ccceeeEEEEEE------E-CCeeE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVF--LN-K-----LG-S--------------TLGVDFQMKTIR------V-DERNV 441 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~--~~-~-----~~-~--------------t~g~~~~~~~~~------~-~~~~~ 441 (593)
+-.|+|+|++||||||++..|..... .. . .. + ..|.++....-. + ....+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 34899999999999998887753211 00 0 00 0 011111110000 0 01135
Q ss_pred EEEEEecCCchhh----hhhhHhhcc---CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 442 ALQLWDTAGQERF----RSMTKNYFR---RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 442 ~~~l~DTaG~e~~----~~~~~~~~~---~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
.+.|+||||.... ......++. ...-+++|++++.. ...+...+..+ ...+ +-=+|.||.|-....
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f---~~~~-~~~vI~TKlDet~~~- 373 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF---SRLP-LDGLIFTKLDETSSL- 373 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh---CCCC-CCEEEEecccccccc-
Confidence 6899999994322 112222332 33467788888643 23333322222 2211 225889999975431
Q ss_pred cccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH-HHHH----HHHHHHHHh
Q psy8073 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI-LDAL----IALSRHVYV 561 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi-~~l~----~~L~~~l~~ 561 (593)
..+..+....+.++.+++ +|.+| +++. ..|++.+..
T Consensus 374 ---------G~i~~~~~~~~lPv~yit--~Gq~VpdDl~~a~~~~l~~~ll~ 414 (424)
T PRK05703 374 ---------GSILSLLIESGLPISYLT--NGQRVPDDIKVANPEELVRLLLG 414 (424)
T ss_pred ---------cHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHHhc
Confidence 123344556677766554 57776 3433 235555554
No 468
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.00 E-value=0.0035 Score=66.98 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=50.2
Q ss_pred EEEEEEecCCchhh----hhhhH--hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 441 VALQLWDTAGQERF----RSMTK--NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 441 ~~~~l~DTaG~e~~----~~~~~--~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
+.+.|+||||.-.. ..... ...-..|.+++|+|++.. ++...+...+....+ ..=+|.||.|....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~---i~giIlTKlD~~~~-- 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG---LTGVVLTKLDGDAR-- 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC---CCEEEEeCccCccc--
Confidence 56899999994211 11111 113357899999998754 333333333332221 23577999996432
Q ss_pred cccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
.-.+..++...+.|+.+++. |..++
T Consensus 255 --------~G~~lsi~~~~~~PI~fi~~--Ge~i~ 279 (428)
T TIGR00959 255 --------GGAALSVRSVTGKPIKFIGV--GEKID 279 (428)
T ss_pred --------ccHHHHHHHHHCcCEEEEeC--CCChh
Confidence 11244556667777666554 44443
No 469
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.94 E-value=0.0029 Score=53.68 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=50.3
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 395 IVFAG-DAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 395 I~ivG-~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
|+|+| ..|+||||+...+...- ...-.++.-.|. |. .+.+.|+|+|+... ......+..||.+|++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~~d~-------d~-~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLLIDL-------DP-QYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEEEeC-------CC-CCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56666 67899999987765432 111111211221 21 15689999998542 223367778999999998
Q ss_pred CCChhcHHHHHHHHH
Q psy8073 474 VTNERSFNSVKNWVE 488 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~ 488 (593)
.+ ..+...+..++.
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 84 455556655554
No 470
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.92 E-value=0.0026 Score=57.27 Aligned_cols=107 Identities=14% Similarity=0.188 Sum_probs=62.4
Q ss_pred EEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCC
Q psy8073 396 VFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVT 475 (593)
Q Consensus 396 ~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~ 475 (593)
+.-|.+|+|||++--.+...- ......+.-.|.+...-.+ .+.+.++|||+.. .......+..+|.+|+|.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~-~~~~~~~~~vd~D~~~~~~---~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALAL-AKLGKRVLLLDADLGLANL---DYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHH-HHCCCcEEEEECCCCCCCC---CCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 456889999999987765432 1111111112222110011 1568999999842 233456788999999999986
Q ss_pred ChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 476 NERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 476 ~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
..++......+..+.... ...++.+|.|+++..
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 344444343344443332 235788999999743
No 471
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.92 E-value=0.047 Score=56.83 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy8073 141 THFEGALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQA--KEEARAKYEQEKAILMRKMEH 218 (593)
Q Consensus 141 ~~~E~~i~~~~~~i~~~~~e~e~le~~l~r~~~~~~~~~~~l~eEmdqq~~~~~~~~--~~ee~~k~e~~~~el~~~~e~ 218 (593)
..|+.+...+..++...+++.+++...++.+ ++|++-|+..+++. ..-+..|++.....|+.+.+.
T Consensus 260 ~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea------------~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 260 LGFEKFVHIINTDIANLKTQNDNLYEKIQEA------------MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666665555555 34555565555544 345678899999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCcccccc----------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 219 ETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHN----------FSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEG 288 (593)
Q Consensus 219 e~~elq~~~~~~~~~e~~~~~~~~~~~~~~~e~~~----------l~~en~~L~~~l~~~q~~l~~~~~el~~l~~~~~~ 288 (593)
-...++.+...+...|++++.+++...+++.++.+ ..+|..+|-.+|....-+...+.+++-.-+-+...
T Consensus 328 ~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~ 407 (622)
T COG5185 328 WPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQG 407 (622)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHH
Confidence 88888888888888888888888877777555433 44566666666666555555544444333222222
Q ss_pred HHHHHhhhhhccccc
Q psy8073 289 KCQELNQLVGDYLEL 303 (593)
Q Consensus 289 ~~~e~n~~l~~~~~~ 303 (593)
-...+.+++++.++|
T Consensus 408 ~~~slek~~~~~~sl 422 (622)
T COG5185 408 IFKSLEKTLRQYDSL 422 (622)
T ss_pred HHHHHHHHHHHHHHH
Confidence 235566677765555
No 472
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.92 E-value=0.0029 Score=54.10 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=61.4
Q ss_pred EEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCC
Q psy8073 397 FAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTN 476 (593)
Q Consensus 397 ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~ 476 (593)
+-+..|+||||+...|...--......+.-.|.+.. .. ..+.|+|||+.... .....+..||.+|++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~- 75 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----FG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD- 75 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----CC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-
Confidence 346788999998877654321110112222222211 11 15899999985432 3445678899999999874
Q ss_pred hhcHHHHHHHHHHHHHHcCC-CCcEEEEEeC
Q psy8073 477 ERSFNSVKNWVEAVEEVTEN-SIPIVICANK 506 (593)
Q Consensus 477 ~~s~~~~~~~~~~i~~~~~~-~~piivV~NK 506 (593)
..+...+..++..+...... ...+.+|+|+
T Consensus 76 ~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 76 LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 45666677777777665543 3567788885
No 473
>KOG0465|consensus
Probab=96.91 E-value=0.00066 Score=72.86 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=83.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCc--------cccC--------CCCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEV--------FLNK--------LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~--------~~~~--------~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
+.-+|.|.-+-.+||||+-++.+... +... ....-|++.......+....+.+.|+||||+-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 44578888888999999999875431 1110 0112344555555555566789999999999988
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
.--....++--|++|+|+|+..+..-+...-|.+.- .-++|.|..+||+|....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~----ry~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK----RYNVPRICFINKMDRMGA 171 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH----hcCCCeEEEEehhhhcCC
Confidence 666667788899999999998776656666676533 345899999999997544
No 474
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.91 E-value=0.0033 Score=46.57 Aligned_cols=44 Identities=18% Similarity=0.415 Sum_probs=28.5
Q ss_pred CCCEEEEEEeCCChh--cHHHHHHHHHHHHHHcCCCCcEEEEEeCCC
Q psy8073 464 RADGVMLLYDVTNER--SFNSVKNWVEAVEEVTENSIPIVICANKVD 508 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~piivV~NK~D 508 (593)
-+++|+|++|.+... +.+.-..++..|+.... +.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 478999999998644 45555557777777664 489999999998
No 475
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.81 E-value=0.0027 Score=67.64 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=55.0
Q ss_pred CccceeeEEEEEEE-CCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhc----------HH-HHHHHHHHH
Q psy8073 423 STLGVDFQMKTIRV-DERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERS----------FN-SVKNWVEAV 490 (593)
Q Consensus 423 ~t~g~~~~~~~~~~-~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s----------~~-~~~~~~~~i 490 (593)
.|.|+ ....+.+ ++ ..+.++|++|+...+..|..++.++++||||+++++-.- +. .+.-|-..+
T Consensus 221 ~T~Gi--~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~ 296 (389)
T PF00503_consen 221 KTTGI--TEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESIC 296 (389)
T ss_dssp --SSE--EEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHH
T ss_pred CCCCe--eEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHH
Confidence 45443 3445555 44 889999999998888999999999999999999874211 11 122122222
Q ss_pred HHHcCCCCcEEEEEeCCCC
Q psy8073 491 EEVTENSIPIVICANKVDL 509 (593)
Q Consensus 491 ~~~~~~~~piivV~NK~Dl 509 (593)
....-.++|+||+.||.|+
T Consensus 297 ~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 297 NNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp TSGGGTTSEEEEEEE-HHH
T ss_pred hCcccccCceEEeeecHHH
Confidence 2222246899999999996
No 476
>KOG0034|consensus
Probab=96.80 E-value=0.012 Score=55.47 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=85.2
Q ss_pred HHHHHHHhHhCCC-CCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKK-GTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGK-VSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~-i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
..+...|..+|.+ ++|+|+.+++..+. .+..+| -.+.|+..++++++|. |+|++|+..+..+........+...++
T Consensus 33 ~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np-~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF 110 (187)
T KOG0034|consen 33 ERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP-LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAF 110 (187)
T ss_pred HHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc-HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHH
Confidence 3577889999999 99999999999999 333333 2468999999999888 999999999998865555544555555
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccC--ch----HHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTS--GK----KLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~--~e----ev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
.-.+....+. .....+..++..+-... .+ .+ -+..++... +.+ ..+..+||++-..+.+
T Consensus 111 ~vYD~~~~G~---I~reel~~iv~~~~~~~------~~~~~e~~~~i~d~t~~e~--D~d-~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 111 RVYDLDGDGF---ISREELKQILRMMVGEN------DDMSDEQLEDIVDKTFEEA--DTD-GDGKISFEEFCKVVEK 175 (187)
T ss_pred HHhcCCCCCc---CcHHHHHHHHHHHHccC------CcchHHHHHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHHc
Confidence 5444432221 22233444443333221 02 33 344445555 333 3455678877665543
No 477
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0059 Score=69.22 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=78.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcc--ccC-C--------------------CCccceeeEEEEEE------E-CCeeE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVF--LNK-L--------------------GSTLGVDFQMKTIR------V-DERNV 441 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~--~~~-~--------------------~~t~g~~~~~~~~~------~-~~~~~ 441 (593)
+-.|+|||++||||||++..|+.... .+. . ....|+++....-. + ....+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 34789999999999999999875421 000 0 00112212110000 0 01224
Q ss_pred EEEEEecCCch----hhhhhhHhh--ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc
Q psy8073 442 ALQLWDTAGQE----RFRSMTKNY--FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQA 515 (593)
Q Consensus 442 ~~~l~DTaG~e----~~~~~~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~ 515 (593)
.+.|+||||.. ......... ....+-+++|+|++.. ...+......+......+ +-=+|++|.|-....
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~~~-- 339 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-VDGCIITKLDEATHL-- 339 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-CCEEEEeccCCCCCc--
Confidence 58999999922 111111111 2345678899999742 223332222222211111 234789999975431
Q ss_pred ccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH-HHHH----HHHHHHHHh
Q psy8073 516 KGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI-LDAL----IALSRHVYV 561 (593)
Q Consensus 516 ~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi-~~l~----~~L~~~l~~ 561 (593)
-.+-.+....+.++.+++ +|.+| +++. ..|++.+..
T Consensus 340 --------G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 340 --------GPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred --------cHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 122334556677766665 68887 4544 235555553
No 478
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.76 E-value=0.001 Score=57.48 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=42.9
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYG 63 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~ 63 (593)
.+.=.|..+|.|+||+++..|+..+..-+.-+..-+...+..+|.|+||.||+.|+..+
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 44556999999999999999998887766333334679999999999999999999754
No 479
>KOG2423|consensus
Probab=96.75 E-value=0.00055 Score=69.76 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh--hhhh
Q psy8073 381 NSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF--RSMT 458 (593)
Q Consensus 381 ~~~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~--~~~~ 458 (593)
.....-......|-|.++|.|||||||+||.|-...+. .+.|.+|-+-...-+++- ..+-|+|+||+..- .+-+
T Consensus 296 RQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVC-kvAPIpGETKVWQYItLm---krIfLIDcPGvVyps~dset 371 (572)
T KOG2423|consen 296 RQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVC-KVAPIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSET 371 (572)
T ss_pred HHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccc-cccCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchH
Confidence 33444455677899999999999999999999877543 234444433222222222 24778999995422 1222
Q ss_pred HhhccCCCEEEEEEeCCChhcH
Q psy8073 459 KNYFRRADGVMLLYDVTNERSF 480 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~s~ 480 (593)
...+ -+|+-|=.+++|..+
T Consensus 372 ~ivL---kGvVRVenv~~pe~y 390 (572)
T KOG2423|consen 372 DIVL---KGVVRVENVKNPEDY 390 (572)
T ss_pred HHHh---hceeeeeecCCHHHH
Confidence 2233 356777778877543
No 480
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.75 E-value=0.03 Score=57.62 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKE 415 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~ 415 (593)
-.+|-|-=|+|||||+|.++.+
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~ 24 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLAN 24 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhc
Confidence 3577899999999999999875
No 481
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.74 E-value=0.0058 Score=66.09 Aligned_cols=152 Identities=17% Similarity=0.152 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccc--------CCCC---------------ccceeeEEEEEE-------ECCeeE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLN--------KLGS---------------TLGVDFQMKTIR-------VDERNV 441 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~--------~~~~---------------t~g~~~~~~~~~-------~~~~~~ 441 (593)
+--|+|+|++||||||++..|+...... .... ..|..+....-. ....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 3579999999999999999987531100 0000 011111100000 011124
Q ss_pred EEEEEecCCchhhh---hhhHhhccC---CCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc
Q psy8073 442 ALQLWDTAGQERFR---SMTKNYFRR---ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQA 515 (593)
Q Consensus 442 ~~~l~DTaG~e~~~---~~~~~~~~~---ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~ 515 (593)
.+.++||+|..... ......+.. ..-.++|+|++... ..+.+ .+..+... ..--+|+||.|-...
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~---i~~~f~~~-~~~g~IlTKlDet~~--- 406 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNE---VVQAYRGP-GLAGCILTKLDEAAS--- 406 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHH---HHHHhccC-CCCEEEEeCCCCccc---
Confidence 57899999932211 111111111 22367888887432 22322 22333332 233567899997543
Q ss_pred ccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH-HHHH----HHHHHHHHh
Q psy8073 516 KGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI-LDAL----IALSRHVYV 561 (593)
Q Consensus 516 ~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi-~~l~----~~L~~~l~~ 561 (593)
.-.+-.+...++.++.+++ +|.+| +++. ..|++.+.+
T Consensus 407 -------~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 407 -------LGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred -------chHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence 1122334556677766664 68888 5544 345555554
No 482
>KOG0469|consensus
Probab=96.68 E-value=0.0032 Score=66.03 Aligned_cols=114 Identities=21% Similarity=0.322 Sum_probs=74.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC--ccc-cCCCC-----------ccceeeEEEEEEE----------------CCeeE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKE--VFL-NKLGS-----------TLGVDFQMKTIRV----------------DERNV 441 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~--~~~-~~~~~-----------t~g~~~~~~~~~~----------------~~~~~ 441 (593)
.-++.++.+..-|||||-..|+.+ ..+ ...+. .-|+++....+.+ ++.++
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 346778888999999999998764 111 11111 1122222222221 45678
Q ss_pred EEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCC
Q psy8073 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509 (593)
Q Consensus 442 ~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl 509 (593)
.+.|+|.||+..|.+-.-..++-.|++++|+|+-+..-.+.-.-+.+.+.. .+.-++|.||.|.
T Consensus 99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhH
Confidence 899999999999988888999999999999999876544332223333322 2333678999995
No 483
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.65 E-value=0.0025 Score=39.05 Aligned_cols=25 Identities=40% Similarity=0.687 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 40 SDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 40 ~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
++++|..+|.|+||.|+++||...+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3578999999999999999998753
No 484
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.62 E-value=0.013 Score=54.70 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=43.7
Q ss_pred EEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 442 ~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
.+.|+||||.... .....+..||.+|++++.+. .+...+..++..+.... ...+.+|.|+++...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc
Confidence 5899999985332 24455689999999998864 44555555555555422 235679999998653
No 485
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.60 E-value=0.011 Score=48.76 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=45.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhh-hHhhccCCCEEEEEEe
Q psy8073 395 IVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSM-TKNYFRRADGVMLLYD 473 (593)
Q Consensus 395 I~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~-~~~~~~~ad~vi~v~D 473 (593)
|++.|.+|+|||++...+...--. .|. +...++ .+.++|++|.-..... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999988654311 111 112223 5889999985432211 2456678999999998
Q ss_pred CCCh
Q psy8073 474 VTNE 477 (593)
Q Consensus 474 ~~~~ 477 (593)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 8643
No 486
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.54 E-value=0.12 Score=58.68 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhhhhccCcccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 226 HLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKS 284 (593)
Q Consensus 226 ~~~~~~~~e~~~~~~~~~~~~~~~e~~~l~~en~~L~~~l~~~q~~l~~~~~el~~l~~ 284 (593)
+.++.+.+|.+++++..+++....++..|..+.++|+.--.+.+.....|.+.|..||.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 44455666666666666666666666666666666655323344445555555555554
No 487
>KOG0046|consensus
Probab=96.54 E-value=0.0052 Score=64.72 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=55.9
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCC-----HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ-----PTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~-----~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
.++++.|...| |++|+|+..++..++...+.. .++++.++...+.|.+|+|+|++|+.+|....
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 36788899999 999999999999999977643 46778999999999999999999999887654
No 488
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.49 E-value=1.5 Score=47.76 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCcccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 221 QELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEG 288 (593)
Q Consensus 221 ~elq~~~~~~~~~e~~~~~~~~~~~~~~~e~~~l~~en~~L~~~l~~~q~~l~~~~~el~~l~~~~~~ 288 (593)
.+++.|...+.+++.-++....+-..+..++.+.+.-| +=.|.+++..|..+++-+..+|.+++.
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n---~vqlsE~~rel~Elks~lrv~qkEKEq 435 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCN---RVQLSENRRELQELKSSLRVAQKEKEQ 435 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333333333333222 224555555555555555555555543
No 489
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.47 E-value=0.012 Score=52.21 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCc
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEV 416 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~ 416 (593)
+.-|+|.|++|+|||+|++.++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999998765
No 490
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.46 E-value=0.014 Score=58.80 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=65.8
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC---c-------------
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG---Q------------- 451 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG---~------------- 451 (593)
...+...++|+|++|.|||+++++|..... ...... ...++|..+.+|. .
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 345567899999999999999999987542 111111 1124556666654 1
Q ss_pred --------hhhhhhhHhhccCCCEEEEEEeCCC---hhcHHHHHHHHHHHHHHcC-CCCcEEEEEeC
Q psy8073 452 --------ERFRSMTKNYFRRADGVMLLYDVTN---ERSFNSVKNWVEAVEEVTE-NSIPIVICANK 506 (593)
Q Consensus 452 --------e~~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~-~~~piivV~NK 506 (593)
..........++...+=++|+|=-. .-+....+..++.++..+. -.+|+|.||++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1112234456778888899998432 1233444556666766654 46999999975
No 491
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.45 E-value=0.028 Score=52.88 Aligned_cols=71 Identities=13% Similarity=0.063 Sum_probs=43.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEE--ecC-CchhhhhhhHhhccCC
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW--DTA-GQERFRSMTKNYFRRA 465 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~--DTa-G~e~~~~~~~~~~~~a 465 (593)
...+-.++|+|+.|+|||||++.+++-. .++.|. +.+++..+.+..- +.. |+.+-..++...+.+.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p 90 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQL-----IPNGDN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNA 90 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC-----CCCCcE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCC
Confidence 3566789999999999999999997654 222222 2233322221111 133 3334456777788888
Q ss_pred CEEEE
Q psy8073 466 DGVML 470 (593)
Q Consensus 466 d~vi~ 470 (593)
+++|+
T Consensus 91 ~lllL 95 (177)
T cd03222 91 TFYLF 95 (177)
T ss_pred CEEEE
Confidence 87766
No 492
>KOG0995|consensus
Probab=96.34 E-value=0.27 Score=53.06 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccc----------ccchhHhHHHHHHHHHHH
Q psy8073 199 EEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTS----------DHNFSFENEELKITLEKT 268 (593)
Q Consensus 199 ~ee~~k~e~~~~el~~~~e~e~~elq~~~~~~~~~e~~~~~~~~~~~~~~~e----------~~~l~~en~~L~~~l~~~ 268 (593)
+-+-.|+++...+|..+.+.-...|..+...+.+.|+++..++.+..+++.+ ..+...|+.+|.+.|...
T Consensus 272 ~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 272 QDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677777777777666666666666666666666666666666655333 345677888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cccc
Q psy8073 269 KNNLDLVHAEMAQLKSEYEGKCQELNQLVGD-YLEL 303 (593)
Q Consensus 269 q~~l~~~~~el~~l~~~~~~~~~e~n~~l~~-~~~~ 303 (593)
+-++..+.+++-.++-+++....+...++.| |...
T Consensus 352 ~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~ 387 (581)
T KOG0995|consen 352 QSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLI 387 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887778888888 4444
No 493
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.31 E-value=0.047 Score=56.32 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKE 415 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~ 415 (593)
+-++|.|.-|+|||||+|+++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 45678899999999999999854
No 494
>PRK01889 GTPase RsgA; Reviewed
Probab=96.29 E-value=0.0043 Score=65.10 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcC
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKE 415 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~ 415 (593)
.+-+++|+|.+|+|||||+|.|++.
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999999999999875
No 495
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.26 E-value=0.025 Score=56.99 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=62.4
Q ss_pred hhhhHhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
..+.+--+.+.|-+|+|+.+.+|. +..-+..++-.+. ..++.-|||.||+||.+.... .......+...+
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae---~~gi~pvIvlnK~DL~~~~~~------~~~~~~~~y~~~ 140 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE---AGGIEPVIVLNKIDLLDDEEA------AVKELLREYEDI 140 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH---HcCCcEEEEEEccccCcchHH------HHHHHHHHHHhC
Confidence 334444455688888888888775 3333443332222 234666788999999865221 113445566678
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 534 GAIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 534 ~~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
|..++.+|++++.|++++...|..
T Consensus 141 gy~v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 141 GYPVLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred CeeEEEecCcCcccHHHHHHHhcC
Confidence 889999999999999999887754
No 496
>KOG0161|consensus
Probab=96.24 E-value=0.31 Score=60.65 Aligned_cols=108 Identities=13% Similarity=0.236 Sum_probs=58.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccccch
Q psy8073 175 HLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNF 254 (593)
Q Consensus 175 ~~~~~~~l~eEmdqq~~~~~~~~~~ee~~k~e~~~~el~~~~e~e~~elq~~~~~~~~~e~~~~~~~~~~~~~~~e~~~l 254 (593)
...++..+.+||.++ ..-..++-. +++-+|.++.++.-.+..++.++.++.....+++.++..+.......+..+..+
T Consensus 962 ~e~~~~~l~~e~~~~-~e~~~kL~k-ekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~ 1039 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSL-DENISKLSK-EKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMEL 1039 (1930)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555431 111111211 222256666677777777777777777777777777766666655555555555
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 255 SFENEELKITLEKTKNNLDLVHAEMAQLKS 284 (593)
Q Consensus 255 ~~en~~L~~~l~~~q~~l~~~~~el~~l~~ 284 (593)
....+.|..+|...|..+..++.+...|+.
T Consensus 1040 Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 1040 EKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 555555555555555555544443333333
No 497
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.23 E-value=0.0035 Score=55.40 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEV 416 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~ 416 (593)
--++|.|++|+|||++++.++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998753
No 498
>KOG1533|consensus
Probab=96.21 E-value=0.0052 Score=58.80 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=40.4
Q ss_pred EEEEEEecCCchhh---h---hhhHhhccCCCEEEEEEeC------CChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCC
Q psy8073 441 VALQLWDTAGQERF---R---SMTKNYFRRADGVMLLYDV------TNERSFNSVKNWVEAVEEVTENSIPIVICANKVD 508 (593)
Q Consensus 441 ~~~~l~DTaG~e~~---~---~~~~~~~~~ad~vi~v~D~------~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~D 508 (593)
-.+.|+|+|||-.+ . .....++++-|.-+.++.. ++|..|-. .++-.+........|-|=|..|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence 34789999996433 1 1122334445554444443 45655533 233344444455689999999999
Q ss_pred CCCc
Q psy8073 509 LRAD 512 (593)
Q Consensus 509 l~~~ 512 (593)
+...
T Consensus 175 l~~~ 178 (290)
T KOG1533|consen 175 LLKK 178 (290)
T ss_pred HHHh
Confidence 8543
No 499
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.17 E-value=0.75 Score=50.09 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=14.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 253 NFSFENEELKITLEKTKNNLDLVHAEMAQLKSE 285 (593)
Q Consensus 253 ~l~~en~~L~~~l~~~q~~l~~~~~el~~l~~~ 285 (593)
.+..++..|+.+|..++..++..+.+...|+++
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333
No 500
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.16 E-value=1.2 Score=45.82 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=23.5
Q ss_pred cccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8073 248 PTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEG 288 (593)
Q Consensus 248 ~~e~~~l~~en~~L~~~l~~~q~~l~~~~~el~~l~~~~~~ 288 (593)
+.++..++.+.+.|...+.+...+.+.+++++..++..++.
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555666666666666666666666654443
Done!