Query psy8073
Match_columns 593
No_of_seqs 534 out of 4113
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 17:42:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.8E-34 9.5E-39 278.6 19.5 169 389-563 10-178 (216)
2 2ew1_A RAS-related protein RAB 100.0 3.9E-29 1.3E-33 240.1 21.8 169 389-563 23-191 (201)
3 2hup_A RAS-related protein RAB 100.0 4.8E-29 1.7E-33 239.3 21.5 169 389-563 26-195 (201)
4 2a5j_A RAS-related protein RAB 100.0 8.8E-29 3E-33 235.2 22.4 170 388-563 17-186 (191)
5 3tkl_A RAS-related protein RAB 100.0 1.4E-28 4.7E-33 234.2 23.7 171 389-565 13-183 (196)
6 1z0f_A RAB14, member RAS oncog 100.0 9.4E-29 3.2E-33 231.3 22.0 167 389-561 12-178 (179)
7 2fu5_C RAS-related protein RAB 100.0 2.9E-29 9.8E-34 236.4 18.6 169 390-564 6-174 (183)
8 2gf9_A RAS-related protein RAB 100.0 1.4E-28 4.8E-33 233.2 22.8 168 389-562 19-186 (189)
9 2p5s_A RAS and EF-hand domain 100.0 2.5E-29 8.6E-34 240.7 17.8 173 389-561 25-197 (199)
10 2efe_B Small GTP-binding prote 100.0 1.5E-28 5.1E-33 230.7 22.0 167 389-561 9-175 (181)
11 1zbd_A Rabphilin-3A; G protein 100.0 2.2E-28 7.6E-33 234.5 23.6 170 389-564 5-174 (203)
12 1r2q_A RAS-related protein RAB 100.0 8.4E-29 2.9E-33 229.4 19.9 165 390-560 4-168 (170)
13 2bme_A RAB4A, RAS-related prot 100.0 1.7E-28 5.7E-33 231.6 22.1 170 389-564 7-176 (186)
14 1z08_A RAS-related protein RAB 100.0 7.1E-29 2.4E-33 230.3 19.2 166 390-561 4-169 (170)
15 1ek0_A Protein (GTP-binding pr 100.0 9.7E-29 3.3E-33 229.0 20.0 166 392-560 3-168 (170)
16 1z0j_A RAB-22, RAS-related pro 100.0 1.6E-28 5.6E-33 227.7 21.6 165 390-560 4-168 (170)
17 2fg5_A RAB-22B, RAS-related pr 100.0 6.7E-29 2.3E-33 236.3 19.2 169 387-561 18-186 (192)
18 2g6b_A RAS-related protein RAB 100.0 2.1E-28 7.1E-33 229.5 22.1 169 389-563 7-176 (180)
19 2bcg_Y Protein YP2, GTP-bindin 100.0 2.8E-28 9.7E-33 234.4 23.1 171 389-565 5-175 (206)
20 2oil_A CATX-8, RAS-related pro 100.0 1.9E-28 6.5E-33 233.0 21.6 168 389-562 22-189 (193)
21 2il1_A RAB12; G-protein, GDP, 100.0 1.2E-28 4.1E-33 234.6 20.1 167 389-561 23-190 (192)
22 3dz8_A RAS-related protein RAB 100.0 4.2E-29 1.4E-33 237.4 16.8 170 389-564 20-189 (191)
23 3tw8_B RAS-related protein RAB 100.0 3.1E-28 1.1E-32 228.2 22.2 168 389-563 6-173 (181)
24 1g16_A RAS-related protein SEC 100.0 1.8E-28 6.3E-33 227.3 19.4 165 391-562 2-166 (170)
25 3c5c_A RAS-like protein 12; GD 100.0 1.6E-28 5.6E-33 232.7 19.1 166 388-561 17-186 (187)
26 3cbq_A GTP-binding protein REM 100.0 2.9E-28 1E-32 232.7 21.0 168 389-562 20-189 (195)
27 2nzj_A GTP-binding protein REM 100.0 4.8E-28 1.6E-32 225.8 21.7 165 391-562 3-170 (175)
28 3t5g_A GTP-binding protein RHE 100.0 2.6E-28 9E-33 229.3 20.0 168 390-564 4-172 (181)
29 1z2a_A RAS-related protein RAB 100.0 2.5E-28 8.7E-33 225.9 19.6 165 390-561 3-167 (168)
30 2o52_A RAS-related protein RAB 100.0 2.3E-28 7.8E-33 234.3 19.8 169 389-563 22-190 (200)
31 2hxs_A RAB-26, RAS-related pro 100.0 1.6E-28 5.6E-33 229.8 18.4 166 390-561 4-173 (178)
32 3cph_A RAS-related protein SEC 100.0 3.8E-28 1.3E-32 234.5 21.2 175 383-564 11-185 (213)
33 3kkq_A RAS-related protein M-R 100.0 7.4E-28 2.5E-32 226.7 22.3 166 389-561 15-182 (183)
34 3ihw_A Centg3; RAS, centaurin, 100.0 6.1E-28 2.1E-32 228.3 21.7 166 387-563 15-182 (184)
35 2y8e_A RAB-protein 6, GH09086P 100.0 3.2E-28 1.1E-32 227.7 19.2 166 389-560 11-176 (179)
36 2fn4_A P23, RAS-related protei 100.0 6.9E-28 2.3E-32 225.8 21.5 169 389-564 6-175 (181)
37 3cpj_B GTP-binding protein YPT 100.0 3E-28 1E-32 237.6 19.7 170 389-564 10-179 (223)
38 1z06_A RAS-related protein RAB 100.0 5.4E-28 1.8E-32 229.2 20.8 167 389-561 17-188 (189)
39 3bc1_A RAS-related protein RAB 100.0 1.2E-27 4E-32 226.9 22.8 170 389-564 8-188 (195)
40 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.1E-27 3.9E-32 223.8 22.3 166 389-561 4-174 (177)
41 3reg_A RHO-like small GTPase; 100.0 7E-28 2.4E-32 229.4 21.2 170 388-563 19-190 (194)
42 3q85_A GTP-binding protein REM 100.0 5.5E-28 1.9E-32 224.2 19.9 165 392-562 2-168 (169)
43 3q3j_B RHO-related GTP-binding 100.0 3.9E-28 1.3E-32 235.4 19.1 175 388-564 23-206 (214)
44 3clv_A RAB5 protein, putative; 100.0 1.8E-27 6.1E-32 227.4 23.5 167 389-564 4-207 (208)
45 3q72_A GTP-binding protein RAD 100.0 8.3E-28 2.8E-32 222.3 20.3 163 392-562 2-165 (166)
46 1x3s_A RAS-related protein RAB 100.0 1E-27 3.6E-32 227.8 21.1 166 390-562 13-179 (195)
47 2g3y_A GTP-binding protein GEM 100.0 1.2E-27 4.2E-32 231.1 21.8 167 389-562 34-204 (211)
48 2iwr_A Centaurin gamma 1; ANK 100.0 1.3E-27 4.5E-32 223.9 21.2 163 390-563 5-171 (178)
49 1ky3_A GTP-binding protein YPT 100.0 8.8E-28 3E-32 225.3 19.1 169 389-562 5-179 (182)
50 1u8z_A RAS-related protein RAL 100.0 1.9E-27 6.6E-32 219.6 21.0 164 391-561 3-167 (168)
51 2bov_A RAla, RAS-related prote 100.0 2.1E-27 7.2E-32 227.8 22.1 169 388-563 10-179 (206)
52 3oes_A GTPase rhebl1; small GT 100.0 5E-28 1.7E-32 232.0 17.4 172 387-565 19-191 (201)
53 1c1y_A RAS-related protein RAP 100.0 1.6E-27 5.4E-32 220.3 19.6 163 391-560 2-166 (167)
54 1kao_A RAP2A; GTP-binding prot 100.0 1.8E-27 6.3E-32 219.5 19.2 164 391-561 2-166 (167)
55 2f7s_A C25KG, RAS-related prot 100.0 6.7E-28 2.3E-32 233.8 16.7 171 389-565 22-203 (217)
56 2q3h_A RAS homolog gene family 100.0 3.4E-27 1.2E-31 225.8 20.8 175 387-563 15-197 (201)
57 4djt_A GTP-binding nuclear pro 100.0 1.4E-27 4.9E-32 231.6 18.0 177 389-571 8-185 (218)
58 2yc2_C IFT27, small RAB-relate 100.0 7.5E-28 2.6E-32 231.2 15.7 169 390-563 18-194 (208)
59 1vg8_A RAS-related protein RAB 100.0 3.6E-27 1.2E-31 226.5 20.2 168 389-563 5-177 (207)
60 2a9k_A RAS-related protein RAL 100.0 6E-27 2E-31 220.6 21.2 167 389-562 15-182 (187)
61 1m7b_A RND3/RHOE small GTP-bin 100.0 2.4E-27 8.2E-32 223.8 18.4 171 389-561 4-183 (184)
62 2atx_A Small GTP binding prote 100.0 5.2E-27 1.8E-31 223.2 20.6 169 390-560 16-192 (194)
63 2atv_A RERG, RAS-like estrogen 99.9 5.8E-27 2E-31 223.5 20.4 166 390-563 26-193 (196)
64 2cjw_A GTP-binding protein GEM 99.9 7.2E-27 2.5E-31 222.5 20.9 165 391-562 5-173 (192)
65 4dsu_A GTPase KRAS, isoform 2B 99.9 9.6E-27 3.3E-31 219.8 21.5 171 391-569 3-174 (189)
66 1mh1_A RAC1; GTP-binding, GTPa 99.9 4.5E-27 1.5E-31 221.5 18.9 170 390-561 3-180 (186)
67 2gf0_A GTP-binding protein DI- 99.9 6E-27 2.1E-31 223.4 19.3 171 390-568 6-178 (199)
68 2erx_A GTP-binding protein DI- 99.9 4.6E-27 1.6E-31 218.1 17.8 164 391-561 2-167 (172)
69 2j0v_A RAC-like GTP-binding pr 99.9 4.4E-27 1.5E-31 227.1 17.8 172 390-563 7-182 (212)
70 3gj0_A GTP-binding nuclear pro 99.9 1.7E-27 5.9E-32 231.7 15.0 167 388-563 11-177 (221)
71 1gwn_A RHO-related GTP-binding 99.9 6.6E-27 2.2E-31 225.2 18.4 170 390-561 26-204 (205)
72 2j1l_A RHO-related GTP-binding 99.9 1.1E-26 3.7E-31 225.2 18.4 171 390-562 32-210 (214)
73 3bwd_D RAC-like GTP-binding pr 99.9 3E-27 1E-31 222.0 13.8 169 390-560 6-180 (182)
74 2ce2_X GTPase HRAS; signaling 99.9 5E-26 1.7E-30 209.4 21.7 162 392-561 3-165 (166)
75 2gco_A H9, RHO-related GTP-bin 99.9 3.1E-26 1E-30 219.6 20.9 169 390-560 23-199 (201)
76 3con_A GTPase NRAS; structural 99.9 7.2E-26 2.4E-30 214.5 22.6 165 390-562 19-184 (190)
77 3l0i_B RAS-related protein RAB 99.9 8.7E-29 3E-33 236.9 2.4 167 389-561 30-196 (199)
78 3t1o_A Gliding protein MGLA; G 99.9 2.8E-27 9.5E-32 225.0 12.5 166 389-564 11-195 (198)
79 4gzl_A RAS-related C3 botulinu 99.9 1.7E-26 6E-31 221.9 17.5 169 389-559 27-203 (204)
80 4bas_A ADP-ribosylation factor 99.9 2.7E-26 9.2E-31 218.8 18.1 170 387-563 12-191 (199)
81 2fv8_A H6, RHO-related GTP-bin 99.9 4E-26 1.4E-30 219.8 19.5 170 390-561 23-200 (207)
82 1upt_A ARL1, ADP-ribosylation 99.9 6.4E-26 2.2E-30 210.5 17.2 165 389-561 4-169 (171)
83 2h57_A ADP-ribosylation factor 99.9 9.1E-26 3.1E-30 214.0 18.6 161 389-561 18-187 (190)
84 1f6b_A SAR1; gtpases, N-termin 99.9 4.7E-26 1.6E-30 217.9 16.1 156 390-558 23-196 (198)
85 1zj6_A ADP-ribosylation factor 99.9 6.3E-26 2.1E-30 214.6 16.6 160 390-562 14-179 (187)
86 1ksh_A ARF-like protein 2; sma 99.9 2.5E-25 8.6E-30 210.0 20.3 160 390-562 16-181 (186)
87 1r8s_A ADP-ribosylation factor 99.9 2.2E-26 7.6E-31 212.2 12.7 161 393-561 1-162 (164)
88 1zd9_A ADP-ribosylation factor 99.9 3.2E-26 1.1E-30 216.9 14.0 163 387-561 17-185 (188)
89 1fzq_A ADP-ribosylation factor 99.9 1.2E-25 4E-30 211.9 16.5 159 390-561 14-178 (181)
90 2f9l_A RAB11B, member RAS onco 99.9 7.4E-25 2.5E-29 209.6 22.1 166 391-562 4-169 (199)
91 1m2o_B GTP-binding protein SAR 99.9 1.8E-25 6.3E-30 212.3 17.5 156 390-558 21-189 (190)
92 2h17_A ADP-ribosylation factor 99.9 1E-25 3.5E-30 212.0 15.5 158 388-558 17-180 (181)
93 2zej_A Dardarin, leucine-rich 99.9 3.9E-26 1.3E-30 215.7 11.1 166 392-561 2-178 (184)
94 2b6h_A ADP-ribosylation factor 99.9 7E-26 2.4E-30 215.6 12.9 164 390-561 27-191 (192)
95 1moz_A ARL1, ADP-ribosylation 99.9 2.4E-25 8.3E-30 209.2 15.4 160 390-562 16-181 (183)
96 1oix_A RAS-related protein RAB 99.9 2.6E-24 8.8E-29 204.6 20.6 164 390-559 27-190 (191)
97 2x77_A ADP-ribosylation factor 99.9 1.9E-25 6.6E-30 211.5 12.4 165 390-562 20-185 (189)
98 2wkq_A NPH1-1, RAS-related C3 99.9 1.8E-24 6.2E-29 223.3 19.3 171 389-561 152-330 (332)
99 3llu_A RAS-related GTP-binding 99.9 2.7E-25 9.3E-30 212.1 11.8 168 387-559 15-195 (196)
100 3th5_A RAS-related C3 botulinu 99.9 9.2E-27 3.1E-31 223.6 0.0 168 390-559 28-203 (204)
101 2wji_A Ferrous iron transport 99.9 2.1E-24 7E-29 200.1 13.9 153 392-559 3-163 (165)
102 2lkc_A Translation initiation 99.9 1.2E-23 4E-28 196.6 16.6 159 389-562 5-172 (178)
103 3c5h_A Glucocorticoid receptor 99.9 6.6E-25 2.2E-29 218.6 8.3 165 388-560 15-254 (255)
104 3r7w_A Gtpase1, GTP-binding pr 99.9 1.6E-23 5.6E-28 214.1 15.8 165 391-559 2-179 (307)
105 2qu8_A Putative nucleolar GTP- 99.9 5.9E-23 2E-27 200.8 18.9 164 390-563 27-207 (228)
106 3gee_A MNME, tRNA modification 99.9 3.8E-25 1.3E-29 238.1 3.3 196 351-560 191-397 (476)
107 2fh5_B SR-beta, signal recogni 99.9 4.5E-23 1.5E-27 199.2 17.5 166 390-558 5-213 (214)
108 2gj8_A MNME, tRNA modification 99.9 1.3E-23 4.6E-28 196.1 13.1 155 390-560 2-165 (172)
109 3o47_A ADP-ribosylation factor 99.9 7.6E-24 2.6E-28 218.6 12.5 165 389-561 162-327 (329)
110 3lvq_E ARF-GAP with SH3 domain 99.9 6.9E-24 2.4E-28 231.7 12.3 168 389-569 319-492 (497)
111 2wjg_A FEOB, ferrous iron tran 99.9 3.9E-23 1.3E-27 195.1 13.5 159 390-563 5-171 (188)
112 1svi_A GTP-binding protein YSX 99.9 2.8E-23 9.6E-28 197.3 12.5 158 390-560 21-194 (195)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 3E-24 1E-28 217.7 5.6 161 394-562 1-175 (331)
114 3iev_A GTP-binding protein ERA 99.9 1.3E-22 4.6E-27 207.4 16.0 173 387-570 5-190 (308)
115 2cxx_A Probable GTP-binding pr 99.9 8.3E-23 2.8E-27 192.9 11.9 155 393-562 2-185 (190)
116 2dyk_A GTP-binding protein; GT 99.9 1.8E-22 6E-27 185.2 13.0 150 393-559 2-160 (161)
117 3pqc_A Probable GTP-binding pr 99.9 3.7E-22 1.3E-26 189.1 15.6 159 389-561 20-194 (195)
118 3a1s_A Iron(II) transport prot 99.9 1.4E-22 4.9E-27 201.8 12.4 156 390-560 3-166 (258)
119 3b1v_A Ferrous iron uptake tra 99.9 1.6E-22 5.6E-27 202.6 11.3 154 391-560 2-163 (272)
120 4dhe_A Probable GTP-binding pr 99.9 4.2E-22 1.4E-26 193.5 12.4 166 390-562 27-212 (223)
121 3dpu_A RAB family protein; roc 99.9 1.4E-22 4.7E-27 223.1 8.9 164 389-562 38-209 (535)
122 3iby_A Ferrous iron transport 99.9 4E-22 1.4E-26 198.2 9.6 151 393-558 2-164 (256)
123 1xzp_A Probable tRNA modificat 99.8 4.7E-23 1.6E-27 222.0 0.0 156 389-561 240-405 (482)
124 1wf3_A GTP-binding protein; GT 99.8 3.1E-21 1.1E-25 196.2 13.2 165 391-568 6-179 (301)
125 3i8s_A Ferrous iron transport 99.8 1.1E-21 3.7E-26 197.3 9.1 156 391-561 2-169 (274)
126 3k53_A Ferrous iron transport 99.8 7.5E-21 2.6E-25 190.9 14.0 157 392-562 3-167 (271)
127 1nrj_B SR-beta, signal recogni 99.8 7E-22 2.4E-26 191.4 6.1 150 389-547 9-170 (218)
128 3geh_A MNME, tRNA modification 99.8 3.3E-22 1.1E-26 214.4 3.6 157 387-561 219-384 (462)
129 2e87_A Hypothetical protein PH 99.8 6.5E-20 2.2E-24 191.5 18.7 164 391-565 166-340 (357)
130 2hjg_A GTP-binding protein ENG 99.8 1.4E-20 4.7E-25 201.8 13.6 163 390-565 173-353 (436)
131 2qtf_A Protein HFLX, GTP-bindi 99.8 8.1E-21 2.8E-25 197.9 11.1 169 388-564 174-357 (364)
132 1mky_A Probable GTP-binding pr 99.8 1.4E-20 4.9E-25 201.9 11.1 151 393-562 2-167 (439)
133 4dcu_A GTP-binding protein ENG 99.8 1.2E-20 4.2E-25 203.4 9.8 163 390-565 193-373 (456)
134 2hjg_A GTP-binding protein ENG 99.8 1.1E-20 3.7E-25 202.6 8.0 153 393-561 4-165 (436)
135 1lnz_A SPO0B-associated GTP-bi 99.8 4E-20 1.4E-24 190.8 11.7 158 393-563 159-332 (342)
136 3lxw_A GTPase IMAP family memb 99.8 4E-20 1.4E-24 182.9 10.5 178 390-571 19-218 (247)
137 3qq5_A Small GTP-binding prote 99.8 1.4E-20 4.9E-25 199.1 7.3 159 389-562 31-197 (423)
138 1ega_A Protein (GTP-binding pr 99.8 1.6E-19 5.4E-24 183.9 12.6 166 391-569 7-182 (301)
139 3lxx_A GTPase IMAP family memb 99.8 4.3E-19 1.5E-23 174.6 15.2 180 389-572 26-225 (239)
140 3j2k_7 ERF3, eukaryotic polype 99.8 4.4E-19 1.5E-23 189.9 15.0 165 389-553 14-217 (439)
141 2xtp_A GTPase IMAP family memb 99.8 2.4E-19 8.2E-24 178.8 11.6 175 390-568 20-215 (260)
142 3sjy_A Translation initiation 99.8 5.5E-18 1.9E-22 179.7 20.0 166 389-560 5-191 (403)
143 1mky_A Probable GTP-binding pr 99.8 4.1E-19 1.4E-23 190.5 10.8 166 391-564 179-358 (439)
144 4dcu_A GTP-binding protein ENG 99.8 2.9E-19 9.9E-24 192.6 8.7 157 390-561 21-185 (456)
145 1wb1_A Translation elongation 99.8 2.1E-18 7.1E-23 186.6 14.6 161 390-560 17-188 (482)
146 3cb4_D GTP-binding protein LEP 99.8 2.3E-18 8E-23 189.5 15.3 158 391-560 3-181 (599)
147 3p26_A Elongation factor 1 alp 99.8 5.9E-19 2E-23 191.5 9.2 157 390-550 31-227 (483)
148 3izy_P Translation initiation 99.8 1.8E-20 6.3E-25 203.3 -2.7 160 391-560 3-167 (537)
149 1s0u_A EIF-2-gamma, translatio 99.8 1.4E-17 4.9E-22 176.8 19.0 164 390-560 6-197 (408)
150 2ywe_A GTP-binding protein LEP 99.8 3.2E-18 1.1E-22 188.0 14.4 159 390-560 4-183 (600)
151 3tr5_A RF-3, peptide chain rel 99.8 1.6E-18 5.6E-23 188.8 11.8 117 391-511 12-148 (528)
152 2ged_A SR-beta, signal recogni 99.7 1.2E-18 4E-23 165.1 8.1 114 390-512 46-171 (193)
153 3t5d_A Septin-7; GTP-binding p 99.7 1.7E-18 5.8E-23 174.0 8.9 160 391-559 7-202 (274)
154 3izq_1 HBS1P, elongation facto 99.7 1.3E-18 4.6E-23 192.8 8.4 161 389-551 164-362 (611)
155 1pui_A ENGB, probable GTP-bind 99.7 7.6E-18 2.6E-22 161.8 11.6 160 389-561 23-199 (210)
156 1kk1_A EIF2gamma; initiation o 99.7 2.9E-17 1E-21 174.6 17.0 164 390-560 8-199 (410)
157 1cip_A Protein (guanine nucleo 99.7 1.7E-17 6E-22 171.7 14.6 131 431-563 185-346 (353)
158 1zun_B Sulfate adenylate trans 99.7 7.9E-18 2.7E-22 180.2 11.7 158 390-552 22-215 (434)
159 1d2e_A Elongation factor TU (E 99.7 5.4E-18 1.8E-22 179.4 10.1 163 391-560 2-194 (397)
160 2c78_A Elongation factor TU-A; 99.7 2.7E-18 9.3E-23 182.3 7.7 152 389-547 8-180 (405)
161 2qag_A Septin-2, protein NEDD5 99.7 1.5E-18 5.2E-23 180.9 5.4 164 391-565 36-237 (361)
162 3ohm_A Guanine nucleotide-bind 99.7 3.1E-17 1.1E-21 167.3 14.2 137 423-563 153-320 (327)
163 1jny_A EF-1-alpha, elongation 99.7 1.8E-18 6.3E-23 185.1 5.1 163 390-553 4-205 (435)
164 1g7s_A Translation initiation 99.7 2.3E-17 7.8E-22 181.9 13.2 168 391-562 4-219 (594)
165 1zo1_I IF2, translation initia 99.7 5.2E-19 1.8E-23 190.3 -0.5 160 390-557 2-163 (501)
166 2elf_A Protein translation elo 99.7 2.7E-17 9.2E-22 171.8 11.5 148 394-561 23-180 (370)
167 1r5b_A Eukaryotic peptide chai 99.7 3.5E-18 1.2E-22 184.3 4.7 160 390-552 41-243 (467)
168 1f60_A Elongation factor EEF1A 99.7 3.5E-18 1.2E-22 183.8 3.4 156 390-551 5-202 (458)
169 2aka_B Dynamin-1; fusion prote 99.7 1E-17 3.5E-22 170.2 6.1 160 390-558 24-250 (299)
170 3avx_A Elongation factor TS, e 99.7 3.2E-17 1.1E-21 187.9 9.3 165 389-560 293-485 (1289)
171 4fid_A G protein alpha subunit 99.7 2E-16 6.8E-21 161.9 12.7 135 423-561 147-328 (340)
172 3def_A T7I23.11 protein; chlor 99.7 1.5E-16 5.1E-21 158.7 10.5 118 391-511 35-165 (262)
173 3mca_A HBS1, elongation factor 99.7 4E-18 1.4E-22 188.5 -1.0 155 389-549 174-371 (592)
174 2dy1_A Elongation factor G; tr 99.7 3.9E-16 1.3E-20 175.2 13.9 118 389-510 6-139 (665)
175 2j69_A Bacterial dynamin-like 99.7 3.2E-16 1.1E-20 176.6 12.5 167 390-561 67-325 (695)
176 2h5e_A Peptide chain release f 99.6 7.3E-16 2.5E-20 168.1 14.7 119 390-512 11-149 (529)
177 3t34_A Dynamin-related protein 99.6 1.2E-16 4.1E-21 166.9 7.4 159 391-557 33-257 (360)
178 2qnr_A Septin-2, protein NEDD5 99.6 1.2E-16 4E-21 162.5 6.5 166 391-565 17-218 (301)
179 1h65_A Chloroplast outer envel 99.6 6.2E-16 2.1E-20 154.9 9.5 121 390-512 37-169 (270)
180 1jwy_B Dynamin A GTPase domain 99.6 1.3E-15 4.5E-20 155.9 12.0 163 390-561 22-262 (315)
181 1u0l_A Probable GTPase ENGC; p 99.6 3E-16 1E-20 159.6 6.5 134 407-557 32-169 (301)
182 1dar_A EF-G, elongation factor 99.6 4.5E-15 1.5E-19 167.1 16.6 116 389-512 9-144 (691)
183 1udx_A The GTP-binding protein 99.6 6.8E-15 2.3E-19 155.2 15.7 160 392-563 157-327 (416)
184 1wxq_A GTP-binding protein; st 99.6 7.4E-16 2.5E-20 162.2 7.8 85 393-477 1-114 (397)
185 2xex_A Elongation factor G; GT 99.6 2.1E-14 7.1E-19 161.8 17.4 116 389-512 7-142 (693)
186 2rdo_7 EF-G, elongation factor 99.6 2.3E-14 8E-19 161.5 17.5 120 389-512 7-149 (704)
187 1azs_C GS-alpha; complex (lyas 99.6 5E-15 1.7E-19 154.9 11.0 136 423-562 203-386 (402)
188 1zcb_A G alpha I/13; GTP-bindi 99.6 8.9E-15 3E-19 151.8 11.9 157 402-562 157-354 (362)
189 2xtz_A Guanine nucleotide-bind 99.6 6.4E-15 2.2E-19 152.4 10.2 130 433-562 171-346 (354)
190 2qag_C Septin-7; cell cycle, c 99.6 3.6E-15 1.2E-19 157.4 8.2 158 392-559 31-225 (418)
191 2x2e_A Dynamin-1; nitration, h 99.5 6.9E-16 2.4E-20 160.6 1.5 159 390-557 29-254 (353)
192 1jal_A YCHF protein; nucleotid 99.5 4.4E-14 1.5E-18 145.8 13.9 183 392-585 2-300 (363)
193 2wsm_A Hydrogenase expression/ 99.5 2.8E-14 9.5E-19 138.0 8.4 154 391-561 29-214 (221)
194 2www_A Methylmalonic aciduria 99.5 5.7E-14 1.9E-18 145.7 9.7 104 440-561 166-279 (349)
195 3p32_A Probable GTPase RV1496/ 99.5 2.9E-14 1E-18 148.4 7.2 104 440-561 171-284 (355)
196 2hf9_A Probable hydrogenase ni 99.5 1.3E-15 4.4E-20 148.0 -3.0 154 391-561 37-224 (226)
197 2dby_A GTP-binding protein; GD 99.5 2.7E-13 9.2E-18 140.8 12.9 186 393-586 2-306 (368)
198 1n0u_A EF-2, elongation factor 99.4 2.3E-13 7.9E-18 156.3 10.1 117 390-510 17-163 (842)
199 2p67_A LAO/AO transport system 99.4 2.9E-13 1E-17 140.0 9.5 104 440-560 148-260 (341)
200 2qpt_A EH domain-containing pr 99.4 3.3E-13 1.1E-17 147.9 10.3 119 390-512 63-233 (550)
201 3vqt_A RF-3, peptide chain rel 99.4 2.7E-12 9.2E-17 140.5 13.4 118 391-512 30-167 (548)
202 1yrb_A ATP(GTP)binding protein 99.4 4.6E-12 1.6E-16 125.8 13.4 120 441-561 109-257 (262)
203 4a9a_A Ribosome-interacting GT 99.3 9.1E-12 3.1E-16 129.2 15.3 139 392-534 72-221 (376)
204 1eh2_A EPS15; calcium binding, 99.3 4E-12 1.4E-16 107.8 10.3 86 3-89 14-99 (106)
205 3zvr_A Dynamin-1; hydrolase, D 99.3 3.1E-12 1.1E-16 143.1 11.6 159 390-558 49-275 (772)
206 1fi6_A EH domain protein REPS1 99.3 3.4E-12 1.2E-16 105.6 8.7 69 3-71 8-76 (92)
207 1c07_A Protein (epidermal grow 99.3 5.6E-12 1.9E-16 104.9 8.8 68 3-70 9-76 (95)
208 1iq3_A Ralbp1-interacting prot 99.3 3.9E-12 1.3E-16 108.8 7.5 85 3-87 21-105 (110)
209 2obh_A Centrin-2; DNA repair c 99.3 1.4E-11 4.6E-16 110.5 10.9 135 3-150 5-141 (143)
210 2jq6_A EH domain-containing pr 99.3 1.1E-11 3.6E-16 109.9 9.6 84 3-87 50-133 (139)
211 1qjt_A EH1, epidermal growth f 99.3 1.3E-11 4.4E-16 103.6 9.0 71 3-73 10-80 (99)
212 3u0k_A Rcamp; fluorescent prot 99.3 1.1E-11 3.8E-16 128.1 9.6 136 4-152 302-439 (440)
213 2lhi_A Calmodulin, serine/thre 99.2 6.1E-12 2.1E-16 117.3 6.2 135 4-152 11-147 (176)
214 1exr_A Calmodulin; high resolu 99.2 4.9E-11 1.7E-15 107.3 11.2 136 4-152 10-147 (148)
215 2qm8_A GTPase/ATPase; G protei 99.2 2E-11 6.7E-16 125.9 9.2 104 440-560 147-260 (337)
216 2kgr_A Intersectin-1; structur 99.2 4.7E-11 1.6E-15 102.3 10.0 85 3-87 13-97 (111)
217 3j25_A Tetracycline resistance 99.2 6.1E-12 2.1E-16 140.5 5.6 116 393-512 3-134 (638)
218 3i5g_C Myosin catalytic light 99.2 1.2E-11 4E-16 113.4 6.2 136 4-152 9-151 (159)
219 2lmt_A Calmodulin-related prot 99.2 1.5E-11 5.2E-16 111.0 6.8 135 4-151 10-146 (148)
220 2yv5_A YJEQ protein; hydrolase 99.2 3.8E-11 1.3E-15 121.8 9.4 97 451-556 66-164 (302)
221 3fia_A Intersectin-1; EH 1 dom 99.2 5.1E-11 1.8E-15 102.3 8.7 70 3-73 32-101 (121)
222 2lv7_A Calcium-binding protein 99.2 2.3E-11 8E-16 102.1 6.1 62 3-64 35-98 (100)
223 3i5g_B Myosin regulatory light 99.2 1.8E-11 6.2E-16 111.4 5.3 131 4-152 16-148 (153)
224 2bl0_C Myosin regulatory light 99.2 7.5E-11 2.5E-15 104.9 8.9 134 3-150 5-140 (142)
225 3qrx_A Centrin; calcium-bindin 99.1 2.4E-10 8.2E-15 104.8 12.0 137 3-152 27-165 (169)
226 4fn5_A EF-G 1, elongation fact 99.1 2.6E-10 9E-15 129.0 13.8 118 390-511 11-151 (709)
227 2ohf_A Protein OLA1, GTP-bindi 99.1 4.7E-11 1.6E-15 124.3 7.0 90 389-478 19-130 (396)
228 3fwb_A Cell division control p 99.1 2.4E-10 8.2E-15 103.8 10.8 136 3-151 22-159 (161)
229 4ds7_A Calmodulin, CAM; protei 99.1 2.4E-10 8.3E-15 101.9 10.5 134 3-150 10-145 (147)
230 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 7.6E-10 2.6E-14 115.5 15.3 89 388-476 16-127 (392)
231 2pmy_A RAS and EF-hand domain- 99.1 3.1E-10 1.1E-14 93.4 7.8 65 3-67 26-90 (91)
232 2jnf_A Troponin C; stretch act 99.0 4.9E-10 1.7E-14 101.5 9.7 135 4-151 13-154 (158)
233 2f2o_A Calmodulin fused with c 99.0 8E-10 2.7E-14 102.4 11.0 137 4-153 11-149 (179)
234 3mse_B Calcium-dependent prote 99.0 4.5E-10 1.5E-14 104.7 8.9 133 4-152 39-178 (180)
235 1m45_A MLC1P, myosin light cha 99.0 1.3E-10 4.4E-15 104.2 4.7 134 5-151 5-146 (148)
236 1dtl_A Cardiac troponin C; hel 99.0 6.1E-10 2.1E-14 101.1 9.2 135 4-151 18-158 (161)
237 1top_A Troponin C; contractIle 99.0 9.5E-10 3.2E-14 99.9 10.3 135 4-151 20-159 (162)
238 3nso_A Protein S100-A3; EF-han 99.0 4.5E-10 1.5E-14 94.1 7.1 66 3-68 9-83 (101)
239 1qv0_A Obelin, OBL; photoprote 99.0 1.4E-09 4.7E-14 102.2 11.2 137 3-152 19-177 (195)
240 2ktg_A Calmodulin, putative; e 99.0 8.4E-10 2.9E-14 89.1 8.3 66 3-68 13-80 (85)
241 1uhk_A Aequorin 2, aequorin; E 99.0 1.6E-09 5.6E-14 101.2 11.1 137 3-152 15-173 (191)
242 1tiz_A Calmodulin-related prot 99.0 5.9E-10 2E-14 85.5 6.6 62 5-66 2-65 (67)
243 3zwh_A Protein S100-A4; Ca-bin 99.0 9.8E-10 3.3E-14 92.7 8.2 66 3-68 12-86 (104)
244 3n22_A Protein S100-A2; EF-han 99.0 1.2E-09 4.2E-14 91.1 8.4 66 3-68 10-84 (98)
245 4eto_A Protein S100-A4; calciu 99.0 1.2E-09 4.2E-14 90.2 8.1 66 3-68 9-83 (93)
246 2mys_C Myosin; muscle protein, 99.0 2.3E-09 8E-14 95.7 10.7 133 4-151 8-147 (149)
247 2b1u_A Calmodulin-like protein 99.0 6.8E-10 2.3E-14 86.2 6.0 64 2-65 4-69 (71)
248 1w7j_B Myosin light chain 1; m 99.0 2E-10 7E-15 103.2 3.3 134 4-151 10-149 (151)
249 1avs_A Troponin C; muscle cont 99.0 2E-09 6.7E-14 88.1 9.0 66 3-68 19-86 (90)
250 2kz2_A Calmodulin, CAM; TR2C, 99.0 1.6E-09 5.6E-14 89.6 8.4 64 2-65 27-92 (94)
251 3ox6_A Calcium-binding protein 99.0 9.4E-10 3.2E-14 98.7 7.5 134 4-150 11-151 (153)
252 2joj_A Centrin protein; N-term 99.0 9.8E-10 3.4E-14 86.9 6.6 66 3-68 6-73 (77)
253 1k9u_A Polcalcin PHL P 7; poll 98.9 1.1E-09 3.6E-14 87.0 6.7 65 3-67 2-67 (78)
254 2opo_A Polcalcin CHE A 3; calc 98.9 2.1E-09 7E-14 87.1 8.6 65 3-67 10-75 (86)
255 2bl0_B Myosin regulatory light 98.9 8.1E-10 2.8E-14 98.3 6.7 136 1-152 2-140 (145)
256 2znd_A Programmed cell death p 98.9 2.5E-09 8.6E-14 98.5 10.2 131 2-152 5-138 (172)
257 2lmt_A Calmodulin-related prot 98.9 1E-09 3.6E-14 98.7 7.3 64 2-65 81-146 (148)
258 2lnk_A Protein S100-A4; EF-han 98.9 1.7E-09 5.9E-14 92.5 8.2 66 3-68 21-95 (113)
259 1wdc_C Scallop myosin; calcium 98.9 1.4E-09 4.8E-14 98.3 8.0 135 4-152 9-150 (156)
260 3sjs_A URE3-BP sequence specif 98.9 1.2E-09 4E-14 105.6 7.8 128 4-152 51-180 (220)
261 1wdc_B Scallop myosin; calcium 98.9 2.1E-09 7.1E-14 97.2 9.0 131 4-152 18-150 (156)
262 2kn2_A Calmodulin; S MAPK phos 98.9 2.9E-09 1E-13 87.4 9.0 66 3-68 8-75 (92)
263 3j04_B Myosin regulatory light 98.9 2.1E-09 7.1E-14 95.5 8.7 132 4-152 7-140 (143)
264 1ggw_A Protein (CDC4P); light 98.9 1.5E-09 5.2E-14 96.2 7.5 131 3-151 4-138 (140)
265 1y1x_A Leishmania major homolo 98.9 4.1E-09 1.4E-13 99.2 10.9 130 3-152 26-157 (191)
266 3l82_B F-box only protein 4; T 98.9 5.5E-10 1.9E-14 104.7 4.7 106 449-563 110-225 (227)
267 3ll8_B Calcineurin subunit B t 98.9 2.3E-09 8E-14 96.5 8.6 134 4-152 6-144 (155)
268 2ovk_B RLC, myosin regulatory 98.9 2.1E-09 7E-14 96.9 7.7 131 4-152 16-148 (153)
269 1yx7_A Calsensin, LAN3-6 antig 98.9 1.3E-09 4.3E-14 87.7 5.6 66 3-68 6-79 (83)
270 1c7v_A CAVP, calcium vector pr 98.9 1.4E-09 4.8E-14 87.0 5.9 64 2-66 7-73 (81)
271 3i5g_B Myosin regulatory light 98.9 1.5E-09 5E-14 98.6 6.6 64 2-66 83-148 (153)
272 1j7q_A CAVP, calcium vector pr 98.9 3.1E-09 1.1E-13 86.1 7.8 65 3-68 13-82 (86)
273 3i5g_C Myosin catalytic light 98.9 2.7E-09 9.2E-14 97.5 8.3 64 3-66 84-151 (159)
274 2h2k_A Protein S100-A13; calci 98.9 2.5E-09 8.5E-14 90.5 7.0 66 3-68 21-92 (106)
275 1qx2_A Vitamin D-dependent cal 98.9 2.1E-09 7.2E-14 84.6 6.1 66 2-67 3-74 (76)
276 2y5i_A S100Z, S100 calcium bin 98.9 3.8E-09 1.3E-13 88.3 7.9 65 3-67 9-82 (99)
277 2kax_A Protein S100-A5; EF-han 98.9 2.5E-09 8.7E-14 88.1 6.7 65 3-67 9-79 (92)
278 1nya_A Calerythrin; EF-hand, m 98.9 7.8E-09 2.7E-13 95.1 10.8 134 3-151 6-163 (176)
279 2mys_B Myosin; muscle protein, 98.9 8.5E-09 2.9E-13 94.2 10.9 132 4-152 25-159 (166)
280 1j55_A S-100P protein; metal b 98.9 3.5E-09 1.2E-13 87.8 7.4 66 3-68 8-82 (95)
281 2ovk_C Myosin catalytic light 98.9 1.7E-09 5.9E-14 98.1 6.0 135 4-152 9-151 (159)
282 3rm1_A Protein S100-B; alpha-h 98.9 5.7E-09 2E-13 86.0 8.3 64 4-68 9-82 (92)
283 3nxa_A Protein S100-A16; S100 98.9 5.2E-09 1.8E-13 87.6 8.1 66 3-68 10-85 (100)
284 1alv_A Calpain, S-camld; calci 98.9 1E-08 3.5E-13 94.6 10.7 128 3-152 3-140 (173)
285 4drw_A Protein S100-A10/annexi 98.9 2.3E-09 7.8E-14 92.7 5.8 64 4-68 15-85 (121)
286 3li6_A Calcium-binding protein 98.9 1.2E-09 4.2E-14 83.5 3.7 60 6-65 2-63 (66)
287 2wcb_A Protein S100-A12; calci 98.8 2.7E-09 9.4E-14 88.5 5.9 65 3-67 11-84 (95)
288 3dtp_E RLC, myosin regulatory 98.8 5.9E-09 2E-13 98.5 8.9 132 3-152 56-189 (196)
289 5pal_A Parvalbumin; calcium-bi 98.8 5E-09 1.7E-13 88.9 7.3 65 2-66 39-108 (109)
290 3ec1_A YQEH GTPase; atnos1, at 98.8 3.2E-10 1.1E-14 118.3 -0.3 143 392-548 162-318 (369)
291 1xk4_C Calgranulin B; S100 fam 98.8 6.8E-09 2.3E-13 89.1 8.2 66 3-68 11-86 (113)
292 2bec_A Calcineurin B homologou 98.8 2E-09 6.8E-14 102.1 5.2 134 4-152 29-183 (202)
293 2lhi_A Calmodulin, serine/thre 98.8 3.9E-09 1.3E-13 98.1 7.0 62 3-65 83-146 (176)
294 2ccm_A Calexcitin; EF hand, ca 98.8 1.3E-08 4.3E-13 95.4 10.5 70 3-72 108-177 (191)
295 3sg6_A Gcamp2, myosin light ch 98.8 7.1E-09 2.4E-13 109.6 9.4 136 4-152 312-449 (450)
296 3akb_A Putative calcium bindin 98.8 2.2E-08 7.5E-13 91.0 11.6 135 3-152 3-160 (166)
297 2obh_A Centrin-2; DNA repair c 98.8 8.8E-09 3E-13 91.9 8.7 62 3-64 78-141 (143)
298 1wlz_A DJBP, CAP-binding prote 98.8 6.8E-09 2.3E-13 87.5 7.4 64 3-66 23-88 (105)
299 3fs7_A Parvalbumin, thymic; ca 98.8 7.2E-09 2.5E-13 87.8 7.5 63 3-65 41-108 (109)
300 2d58_A Allograft inflammatory 98.8 8E-09 2.7E-13 87.5 7.7 64 3-66 31-96 (107)
301 2ccm_A Calexcitin; EF hand, ca 98.8 2.1E-08 7.2E-13 93.8 11.3 135 3-152 11-171 (191)
302 3h4s_E KCBP interacting Ca2+-b 98.8 9.4E-09 3.2E-13 91.1 8.4 65 3-67 39-106 (135)
303 1cb1_A Calbindin D9K; calcium- 98.8 3.7E-09 1.3E-13 83.6 5.2 65 3-67 6-76 (78)
304 3pm8_A PFCDPK2, calcium-depend 98.8 2.4E-09 8.2E-14 101.4 4.8 134 4-151 57-194 (197)
305 1xk4_A Calgranulin A; S100 fam 98.8 4.8E-09 1.6E-13 86.6 5.9 65 3-67 9-78 (93)
306 1q80_A SCP, sarcoplasmic calci 98.8 9.4E-09 3.2E-13 94.5 8.5 66 3-68 93-158 (174)
307 2pvb_A Protein (parvalbumin); 98.8 1E-08 3.5E-13 86.7 7.8 63 3-65 40-107 (108)
308 1juo_A Sorcin; calcium-binding 98.8 7.9E-09 2.7E-13 97.7 7.5 126 4-152 33-165 (198)
309 1pva_A Parvalbumin; calcium bi 98.8 1.2E-08 4.2E-13 86.5 7.8 63 3-65 41-108 (110)
310 3e3r_A Calcyphosin, calcyphosi 98.8 5.9E-09 2E-13 98.7 6.4 142 4-152 37-181 (204)
311 2hpk_A Photoprotein berovin; s 98.8 1.6E-08 5.4E-13 96.3 9.4 135 4-153 36-191 (208)
312 3k21_A PFCDPK3, calcium-depend 98.8 2.1E-08 7.2E-13 94.3 10.2 137 4-150 52-189 (191)
313 1gjy_A Sorcin, CP-22, V19; cal 98.8 1.3E-08 4.4E-13 93.3 8.3 122 9-152 6-134 (167)
314 3h2y_A GTPase family protein; 98.8 3.8E-10 1.3E-14 117.5 -2.4 137 392-542 160-311 (368)
315 1s6i_A CDPK, calcium-dependent 98.8 4.3E-09 1.5E-13 98.9 5.0 132 4-151 10-143 (188)
316 2j37_W Signal recognition part 98.8 3.7E-09 1.3E-13 113.8 5.1 152 390-558 99-310 (504)
317 1k94_A Grancalcin; penta-EF-ha 98.8 1.6E-08 5.5E-13 92.4 8.7 123 8-152 3-132 (165)
318 1rro_A RAT oncomodulin; calciu 98.8 1E-08 3.4E-13 86.8 6.7 62 3-64 40-106 (108)
319 1rwy_A Parvalbumin alpha; EF-h 98.8 1.3E-08 4.6E-13 86.1 7.5 63 3-65 40-107 (109)
320 1h8b_A ACT-EF34, alpha-actinin 98.8 1.7E-08 5.8E-13 79.3 7.3 58 2-65 8-70 (75)
321 1bu3_A Calcium-binding protein 98.8 1.3E-08 4.4E-13 86.3 7.2 62 3-64 41-107 (109)
322 1k2h_A S100A1, S-100 protein, 98.7 1.7E-08 5.9E-13 82.9 7.5 65 3-67 8-81 (93)
323 3akb_A Putative calcium bindin 98.7 2.2E-08 7.4E-13 91.0 8.9 66 4-69 98-163 (166)
324 3l2o_B F-box only protein 4; s 98.7 1.2E-08 4.1E-13 100.3 7.1 108 448-563 194-310 (312)
325 2sas_A Sarcoplasmic calcium-bi 98.7 4E-08 1.4E-12 91.0 10.4 136 3-153 7-168 (185)
326 1exr_A Calmodulin; high resolu 98.7 2.9E-08 9.8E-13 88.9 8.9 63 3-65 82-146 (148)
327 1k8u_A S100A6, calcyclin, CACY 98.7 1.4E-08 4.9E-13 82.7 6.1 64 4-67 10-80 (90)
328 1s6j_A CDPK, calcium-dependent 98.7 5E-09 1.7E-13 84.9 3.3 61 4-64 23-85 (87)
329 2aao_A CDPK, calcium-dependent 98.7 1.5E-08 5E-13 92.4 6.8 133 4-152 27-161 (166)
330 2qac_A Myosin A tail domain in 98.7 2.1E-08 7.2E-13 89.4 7.6 129 4-151 14-145 (146)
331 2hpk_A Photoprotein berovin; s 98.7 2.9E-08 1E-12 94.4 8.8 66 6-71 130-195 (208)
332 2ovk_C Myosin catalytic light 98.7 3E-08 1E-12 89.8 8.2 64 3-66 84-151 (159)
333 1q80_A SCP, sarcoplasmic calci 98.7 4.4E-08 1.5E-12 89.9 9.3 134 3-153 5-157 (174)
334 3khe_A Calmodulin-like domain 98.7 1.4E-08 4.8E-13 94.9 6.0 134 3-152 39-185 (191)
335 1qls_A S100C protein, calgizza 98.7 3.4E-08 1.2E-12 82.1 7.7 65 3-67 12-85 (99)
336 2mys_B Myosin; muscle protein, 98.7 3.3E-08 1.1E-12 90.2 8.1 64 3-66 94-159 (166)
337 1psr_A Psoriasin, S100A7; EF-h 98.7 1E-08 3.5E-13 85.9 4.0 64 3-67 9-81 (100)
338 1jba_A GCAP-2, protein (guanyl 98.7 5.3E-08 1.8E-12 92.3 9.5 144 2-152 20-176 (204)
339 2sas_A Sarcoplasmic calcium-bi 98.7 2.6E-08 8.9E-13 92.3 7.2 70 3-72 104-173 (185)
340 2qag_B Septin-6, protein NEDD5 98.7 2.2E-08 7.4E-13 105.2 7.3 115 393-512 43-191 (427)
341 1snl_A Nucleobindin 1, calnuc; 98.7 2.3E-08 7.8E-13 84.1 6.1 61 5-65 21-99 (103)
342 1ij5_A Plasmodial specific LAV 98.7 2.4E-08 8.1E-13 102.2 7.2 129 4-152 188-318 (323)
343 1g8i_A Frequenin, neuronal cal 98.7 5.2E-08 1.8E-12 90.9 9.0 143 2-152 23-175 (190)
344 3j04_B Myosin regulatory light 98.7 2E-08 6.8E-13 89.1 5.7 64 3-66 75-140 (143)
345 2jjz_A Ionized calcium-binding 98.6 4.4E-08 1.5E-12 88.4 7.8 64 3-66 49-114 (150)
346 2bl0_B Myosin regulatory light 98.6 4.2E-08 1.4E-12 87.0 7.5 64 3-66 75-140 (145)
347 1qv0_A Obelin, OBL; photoprote 98.6 4.6E-08 1.6E-12 91.6 8.2 65 8-72 117-183 (195)
348 1a4p_A S100A10; S100 family, E 98.6 2.6E-08 8.8E-13 82.7 5.5 65 3-68 8-79 (96)
349 1wy9_A Allograft inflammatory 98.6 4.8E-08 1.7E-12 87.8 7.7 64 3-66 47-112 (147)
350 1m45_A MLC1P, myosin light cha 98.6 3.7E-08 1.3E-12 87.9 6.9 63 3-65 82-146 (148)
351 1y1x_A Leishmania major homolo 98.6 2.2E-07 7.4E-12 87.2 12.4 61 5-65 94-156 (191)
352 1uhk_A Aequorin 2, aequorin; E 98.6 7E-08 2.4E-12 90.0 8.8 65 8-72 113-179 (191)
353 2r2i_A Guanylyl cyclase-activa 98.6 3.2E-08 1.1E-12 93.3 6.5 142 2-152 12-159 (198)
354 3a8r_A Putative uncharacterize 98.6 3.3E-08 1.1E-12 92.1 6.4 64 3-66 97-170 (179)
355 2i7a_A Calpain 13; calcium-dep 98.6 1.5E-07 5E-12 87.2 10.6 59 5-65 77-141 (174)
356 2ggz_A Guanylyl cyclase-activa 98.6 2.8E-08 9.7E-13 94.9 5.7 142 2-152 17-163 (211)
357 3fwb_A Cell division control p 98.6 8.3E-08 2.9E-12 86.7 8.4 64 3-66 95-160 (161)
358 3h2y_A GTPase family protein; 98.6 9.6E-08 3.3E-12 99.4 9.7 101 450-559 55-158 (368)
359 1wdc_C Scallop myosin; calcium 98.6 7.7E-08 2.6E-12 86.7 7.9 64 3-66 83-150 (156)
360 1jfj_A Ehcabp, calcium-binding 98.6 5.5E-08 1.9E-12 84.7 6.6 129 5-150 1-133 (134)
361 1dgu_A Calcium-saturated CIB; 98.6 9.7E-08 3.3E-12 88.7 8.6 134 4-152 20-171 (183)
362 3qrx_A Centrin; calcium-bindin 98.6 1E-07 3.5E-12 87.0 8.7 64 3-66 100-165 (169)
363 2f33_A Calbindin; EF-hand, Ca2 98.6 8.3E-08 2.8E-12 94.4 8.6 137 3-151 102-259 (263)
364 1top_A Troponin C; contractIle 98.6 1.2E-07 4.1E-12 85.7 9.0 64 3-66 95-160 (162)
365 3khe_A Calmodulin-like domain 98.6 1E-07 3.5E-12 89.0 8.6 67 2-68 121-187 (191)
366 1s6c_A KV4 potassium channel-i 98.6 1.2E-07 4E-12 88.0 8.9 145 1-152 15-168 (183)
367 3u0k_A Rcamp; fluorescent prot 98.6 6.1E-08 2.1E-12 100.3 7.1 63 3-65 374-438 (440)
368 1nya_A Calerythrin; EF-hand, m 98.6 1E-07 3.5E-12 87.5 8.0 65 4-68 102-166 (176)
369 2f33_A Calbindin; EF-hand, Ca2 98.6 6.5E-08 2.2E-12 95.1 7.1 137 2-151 14-174 (263)
370 2ovk_B RLC, myosin regulatory 98.6 6.7E-08 2.3E-12 86.9 6.5 63 3-66 84-148 (153)
371 2d8n_A Recoverin; structural g 98.6 1.6E-07 5.4E-12 89.1 9.3 142 2-152 31-185 (207)
372 3ox6_A Calcium-binding protein 98.6 1E-07 3.5E-12 85.1 7.5 62 3-64 87-151 (153)
373 3dtp_E RLC, myosin regulatory 98.6 5.3E-08 1.8E-12 91.9 5.8 63 3-66 125-189 (196)
374 2mys_C Myosin; muscle protein, 98.6 1E-07 3.5E-12 84.8 7.4 62 3-65 84-147 (149)
375 3nyv_A Calmodulin-domain prote 98.5 1.8E-07 6E-12 101.1 10.5 133 4-152 335-480 (484)
376 1wdc_B Scallop myosin; calcium 98.5 9.6E-08 3.3E-12 86.1 7.0 63 3-66 86-150 (156)
377 2ct9_A Calcium-binding protein 98.5 3.5E-08 1.2E-12 93.9 4.3 134 4-152 29-182 (208)
378 4ds7_A Calmodulin, CAM; protei 98.5 1.4E-07 4.6E-12 83.8 7.7 61 3-64 83-145 (147)
379 3pm8_A PFCDPK2, calcium-depend 98.5 7E-08 2.4E-12 91.2 6.0 64 2-65 127-194 (197)
380 1dtl_A Cardiac troponin C; hel 98.5 7E-08 2.4E-12 87.3 5.7 64 3-66 94-159 (161)
381 1s1e_A KV channel interacting 98.5 3E-07 1E-11 88.8 10.5 145 1-152 48-201 (224)
382 2i7a_A Calpain 13; calcium-dep 98.5 2.1E-07 7.1E-12 86.2 8.9 117 14-152 14-142 (174)
383 2bl0_C Myosin regulatory light 98.5 7.8E-08 2.7E-12 85.1 5.8 61 3-64 78-140 (142)
384 2lvv_A Flagellar calcium-bindi 98.5 6.6E-08 2.3E-12 93.5 5.6 64 4-67 133-199 (226)
385 3a4u_B Multiple coagulation fa 98.5 6.7E-08 2.3E-12 86.5 5.1 62 3-64 67-142 (143)
386 1w7j_B Myosin light chain 1; m 98.5 5.3E-08 1.8E-12 87.2 4.5 62 3-65 86-149 (151)
387 3cs1_A Flagellar calcium-bindi 98.5 9.5E-08 3.2E-12 91.9 6.6 136 4-153 48-196 (219)
388 2bec_A Calcineurin B homologou 98.5 9.9E-08 3.4E-12 90.2 6.5 65 3-67 113-184 (202)
389 2zfd_A Calcineurin B-like prot 98.5 3.7E-07 1.3E-11 88.1 10.6 136 4-152 48-194 (226)
390 1bjf_A Neurocalcin delta; calc 98.5 2.5E-07 8.4E-12 86.5 9.1 142 1-151 22-174 (193)
391 2jnf_A Troponin C; stretch act 98.5 7E-08 2.4E-12 87.1 5.0 63 3-65 90-154 (158)
392 2qac_A Myosin A tail domain in 98.5 1.8E-07 6.1E-12 83.3 7.6 60 3-64 83-144 (146)
393 2aao_A CDPK, calcium-dependent 98.5 7.1E-08 2.4E-12 87.8 5.0 64 3-66 98-161 (166)
394 2hps_A Coelenterazine-binding 98.5 1.5E-07 5E-12 87.5 7.2 66 5-70 101-170 (186)
395 3q5i_A Protein kinase; CDPK, m 98.5 1.3E-07 4.3E-12 102.9 7.5 133 4-152 355-497 (504)
396 2l2e_A Calcium-binding protein 98.5 1.3E-07 4.4E-12 88.3 6.6 144 2-152 23-175 (190)
397 3mse_B Calcium-dependent prote 98.5 1.3E-07 4.4E-12 87.9 6.2 63 4-66 108-178 (180)
398 1ggw_A Protein (CDC4P); light 98.5 1.2E-07 4.3E-12 83.6 5.8 62 3-65 75-138 (140)
399 2f2o_A Calmodulin fused with c 98.5 2.1E-07 7.2E-12 85.9 7.5 64 3-66 83-148 (179)
400 3mwu_A Calmodulin-domain prote 98.5 7.3E-08 2.5E-12 104.3 4.9 135 4-152 331-481 (486)
401 2hps_A Coelenterazine-binding 98.5 5E-08 1.7E-12 90.8 3.0 136 3-153 13-167 (186)
402 2ehb_A Calcineurin B-like prot 98.5 5E-07 1.7E-11 85.6 10.1 136 4-152 37-183 (207)
403 1tq4_A IIGP1, interferon-induc 98.5 5E-07 1.7E-11 94.9 10.6 166 392-564 69-256 (413)
404 2kyc_A Parvalbumin-3, parvalbu 98.4 1.1E-08 3.9E-13 86.5 -1.8 63 3-65 40-107 (108)
405 3ll8_B Calcineurin subunit B t 98.4 2.6E-07 9E-12 82.8 7.2 63 4-66 75-144 (155)
406 1fpw_A Yeast frequenin, calciu 98.4 2.5E-07 8.7E-12 86.2 7.3 144 2-152 23-175 (190)
407 2znd_A Programmed cell death p 98.4 4.2E-07 1.4E-11 83.4 8.7 63 4-66 74-138 (172)
408 3k21_A PFCDPK3, calcium-depend 98.4 3.2E-07 1.1E-11 86.1 8.0 63 2-64 120-189 (191)
409 1s6i_A CDPK, calcium-dependent 98.4 4.7E-08 1.6E-12 91.7 2.1 63 4-66 82-144 (188)
410 2ct9_A Calcium-binding protein 98.4 2.1E-07 7.2E-12 88.5 6.6 64 3-66 112-182 (208)
411 3ec1_A YQEH GTPase; atnos1, at 98.4 2E-07 6.9E-12 97.0 6.7 102 449-559 56-160 (369)
412 1puj_A YLQF, conserved hypothe 98.4 1.4E-07 4.7E-12 94.5 5.1 59 389-451 117-175 (282)
413 3sjs_A URE3-BP sequence specif 98.4 3.4E-07 1.1E-11 88.2 7.6 63 4-67 117-181 (220)
414 3cs1_A Flagellar calcium-bindi 98.4 1.9E-07 6.5E-12 89.8 5.6 65 3-67 129-196 (219)
415 3bow_A Calpain-2 catalytic sub 98.4 2.9E-07 1E-11 104.0 8.0 128 3-152 531-668 (714)
416 3dd4_A KV channel-interacting 98.4 1.2E-06 4E-11 84.8 11.2 142 3-152 63-214 (229)
417 2l4h_A Calcium and integrin-bi 98.4 1.7E-07 5.7E-12 89.9 5.0 132 6-152 53-202 (214)
418 3sop_A Neuronal-specific septi 98.4 5.9E-07 2E-11 89.2 9.0 114 392-512 2-155 (270)
419 3lij_A Calcium/calmodulin depe 98.4 2.2E-07 7.5E-12 100.7 6.4 133 3-151 345-487 (494)
420 2be4_A Hypothetical protein LO 98.4 2.5E-07 8.5E-12 91.4 6.2 139 3-150 103-266 (272)
421 1djx_A PLC-D1, phosphoinositid 98.4 4.3E-08 1.5E-12 108.6 0.1 134 3-153 10-150 (624)
422 2l4h_A Calcium and integrin-bi 98.4 3.8E-07 1.3E-11 87.4 6.8 64 3-66 128-202 (214)
423 2lvv_A Flagellar calcium-bindi 98.4 3.4E-07 1.2E-11 88.4 6.2 138 3-153 50-199 (226)
424 3q5i_A Protein kinase; CDPK, m 98.4 5E-07 1.7E-11 98.2 8.2 66 2-67 433-498 (504)
425 2be4_A Hypothetical protein LO 98.4 3.6E-07 1.2E-11 90.2 6.3 136 2-150 9-174 (272)
426 1jfj_A Ehcabp, calcium-binding 98.4 3.8E-07 1.3E-11 79.2 5.7 65 2-66 34-103 (134)
427 5pal_A Parvalbumin; calcium-bi 98.4 3E-06 1E-10 71.4 11.1 102 1-151 6-107 (109)
428 1dgu_A Calcium-saturated CIB; 98.4 3.6E-07 1.2E-11 84.8 5.8 64 3-66 97-171 (183)
429 1sjj_A Actinin; 3-helix bundle 98.4 1.7E-07 6E-12 108.7 4.4 128 4-151 725-858 (863)
430 1puj_A YLQF, conserved hypothe 98.4 6E-07 2E-11 89.8 7.7 101 445-561 3-106 (282)
431 3nyv_A Calmodulin-domain prote 98.3 5.6E-07 1.9E-11 97.2 8.0 65 3-67 417-481 (484)
432 2jul_A Calsenilin; EF-hand, ca 98.3 8.4E-07 2.9E-11 87.4 8.5 145 1-152 88-241 (256)
433 3cnl_A YLQF, putative uncharac 98.3 1.3E-07 4.6E-12 93.5 2.6 56 393-452 100-155 (262)
434 3dd4_A KV channel-interacting 98.3 5.9E-07 2E-11 86.9 7.1 64 3-66 137-214 (229)
435 3fs7_A Parvalbumin, thymic; ca 98.3 2.8E-06 9.4E-11 71.6 10.3 64 1-66 7-70 (109)
436 1s6c_A KV4 potassium channel-i 98.3 6E-07 2.1E-11 83.1 6.3 66 2-67 54-121 (183)
437 1ij5_A Plasmodial specific LAV 98.3 4.9E-07 1.7E-11 92.4 6.2 65 5-69 254-321 (323)
438 2r2i_A Guanylyl cyclase-activa 98.3 1.2E-06 4E-11 82.5 7.9 64 4-67 52-117 (198)
439 1fpw_A Yeast frequenin, calciu 98.3 1E-06 3.5E-11 82.0 7.4 65 3-67 62-128 (190)
440 2l2e_A Calcium-binding protein 98.3 1.4E-06 4.9E-11 81.0 8.4 63 3-65 98-174 (190)
441 1alv_A Calpain, S-camld; calci 98.3 8.7E-07 3E-11 81.4 6.8 62 4-66 77-140 (173)
442 3lij_A Calcium/calmodulin depe 98.3 8.3E-07 2.8E-11 96.2 7.5 66 2-67 424-489 (494)
443 1jba_A GCAP-2, protein (guanyl 98.3 7.5E-07 2.6E-11 84.2 6.4 61 4-64 95-174 (204)
444 2pvb_A Protein (parvalbumin); 98.3 3E-06 1E-10 71.3 9.4 101 1-150 6-106 (108)
445 2kld_A Polycystin-2; PC2, PKD2 98.3 8.8E-08 3E-12 83.4 -0.3 60 4-67 50-109 (123)
446 2d8n_A Recoverin; structural g 98.3 8E-07 2.7E-11 84.2 6.2 65 3-67 70-136 (207)
447 1rwy_A Parvalbumin alpha; EF-h 98.3 3.9E-06 1.3E-10 70.6 9.9 65 1-67 6-70 (109)
448 1k94_A Grancalcin; penta-EF-ha 98.3 2.2E-06 7.4E-11 78.0 8.6 61 4-66 70-132 (165)
449 1s1e_A KV channel interacting 98.3 1.2E-06 4.1E-11 84.5 7.2 64 3-66 124-201 (224)
450 3e3r_A Calcyphosin, calcyphosi 98.3 1.2E-06 4.2E-11 82.4 7.1 65 3-67 108-182 (204)
451 1bu3_A Calcium-binding protein 98.2 5.5E-06 1.9E-10 69.7 10.3 101 1-150 7-107 (109)
452 3dm5_A SRP54, signal recogniti 98.2 1.2E-06 4.2E-11 92.3 7.4 139 391-547 99-277 (443)
453 1g8i_A Frequenin, neuronal cal 98.2 1.5E-06 5.2E-11 80.8 7.2 63 4-66 63-127 (190)
454 2ggz_A Guanylyl cyclase-activa 98.2 1.6E-06 5.4E-11 82.7 7.4 63 3-65 92-162 (211)
455 1gjy_A Sorcin, CP-22, V19; cal 98.2 2.4E-06 8.1E-11 77.9 8.4 61 4-66 72-134 (167)
456 2ehb_A Calcineurin B-like prot 98.2 2.6E-06 8.9E-11 80.6 8.8 64 3-66 110-183 (207)
457 3mwu_A Calmodulin-domain prote 98.2 3.2E-07 1.1E-11 99.2 2.7 66 3-68 416-483 (486)
458 2zfd_A Calcineurin B-like prot 98.2 2.8E-06 9.4E-11 81.9 8.7 64 3-66 121-194 (226)
459 1pva_A Parvalbumin; calcium bi 98.2 8E-06 2.7E-10 68.8 10.5 101 1-150 7-107 (110)
460 1sra_A Sparc; extracellular ma 98.2 6E-07 2E-11 79.6 3.1 62 5-66 78-140 (151)
461 3sg6_A Gcamp2, myosin light ch 98.2 2E-06 6.9E-11 90.8 7.7 63 3-65 384-448 (450)
462 1rro_A RAT oncomodulin; calciu 98.2 4.9E-06 1.7E-10 69.9 8.7 64 1-66 6-69 (108)
463 2zkm_X 1-phosphatidylinositol- 98.2 3.3E-06 1.1E-10 95.9 9.8 139 3-153 145-298 (799)
464 2jul_A Calsenilin; EF-hand, ca 98.2 1.9E-06 6.6E-11 84.8 7.0 65 3-67 128-194 (256)
465 1bjf_A Neurocalcin delta; calc 98.2 2.7E-06 9.3E-11 79.3 7.1 63 3-65 98-174 (193)
466 1juo_A Sorcin; calcium-binding 98.2 3.8E-06 1.3E-10 79.0 8.1 61 4-66 103-165 (198)
467 2qpt_A EH domain-containing pr 98.1 5.9E-06 2E-10 90.3 10.0 88 2-90 456-543 (550)
468 1f5n_A Interferon-induced guan 98.1 3.9E-06 1.3E-10 91.8 8.5 63 390-452 36-102 (592)
469 3a8r_A Putative uncharacterize 98.1 7.5E-06 2.6E-10 76.0 9.2 138 3-152 27-170 (179)
470 1qxp_A MU-like calpain; M-calp 98.1 2.1E-06 7.1E-11 99.9 5.3 128 3-152 533-670 (900)
471 2v3c_C SRP54, signal recogniti 98.0 2.7E-06 9.4E-11 90.0 5.1 113 392-511 99-252 (432)
472 3h4s_E KCBP interacting Ca2+-b 98.0 7E-06 2.4E-10 72.3 6.6 100 4-153 3-106 (135)
473 3cnl_A YLQF, putative uncharac 97.9 4.9E-06 1.7E-10 82.2 3.6 93 448-557 4-97 (262)
474 3kl4_A SRP54, signal recogniti 97.9 1.5E-05 5.1E-10 84.1 7.4 140 391-548 96-277 (433)
475 3a4u_B Multiple coagulation fa 97.9 7.3E-06 2.5E-10 73.1 3.6 61 7-67 30-97 (143)
476 2kyc_A Parvalbumin-3, parvalbu 97.8 3.7E-06 1.3E-10 70.7 0.9 65 1-67 6-70 (108)
477 3bow_A Calpain-2 catalytic sub 97.8 3.3E-05 1.1E-09 87.2 8.5 63 4-67 605-669 (714)
478 1eg3_A Dystrophin; EF-hand lik 97.7 0.00017 5.8E-09 70.3 11.3 61 7-68 135-197 (261)
479 3szr_A Interferon-induced GTP- 97.7 7.4E-05 2.5E-09 82.7 9.1 68 442-512 148-229 (608)
480 1j8m_F SRP54, signal recogniti 97.6 6.8E-05 2.3E-09 75.3 7.3 141 392-551 98-281 (297)
481 1qxp_A MU-like calpain; M-calp 97.6 0.00012 4E-09 85.1 8.7 62 4-66 607-670 (900)
482 1bif_A 6-phosphofructo-2-kinas 97.5 9E-06 3.1E-10 87.4 -0.9 114 390-508 37-160 (469)
483 1nub_A Basement membrane prote 97.5 3.3E-05 1.1E-09 74.2 2.8 62 5-66 156-218 (229)
484 2v71_A Nuclear distribution pr 97.4 0.011 3.9E-07 53.9 18.1 149 144-299 9-168 (189)
485 1t9h_A YLOQ, probable GTPase E 97.4 6.1E-05 2.1E-09 75.8 3.4 91 455-552 77-168 (307)
486 1eg3_A Dystrophin; EF-hand lik 97.4 0.00039 1.3E-08 67.7 8.6 61 3-66 167-242 (261)
487 2zkm_X 1-phosphatidylinositol- 97.3 8.2E-05 2.8E-09 84.5 3.5 65 2-66 217-297 (799)
488 3e70_C DPA, signal recognition 97.3 0.00015 5.1E-09 73.8 4.6 144 390-551 127-310 (328)
489 3o0z_A RHO-associated protein 97.3 0.031 1.1E-06 49.8 18.6 88 202-289 64-155 (168)
490 3ohm_B 1-phosphatidylinositol- 97.2 0.00051 1.7E-08 78.2 7.8 138 4-153 150-302 (885)
491 1djx_A PLC-D1, phosphoinositid 97.2 0.00039 1.3E-08 76.9 6.7 64 2-66 78-149 (624)
492 3q5d_A Atlastin-1; G protein, 97.0 0.00062 2.1E-08 71.9 6.1 25 390-414 65-89 (447)
493 2rcn_A Probable GTPase ENGC; Y 97.0 0.002 6.9E-08 66.0 9.5 83 460-554 126-212 (358)
494 2yhs_A FTSY, cell division pro 96.9 0.00091 3.1E-08 71.2 6.2 25 390-414 291-315 (503)
495 2xxa_A Signal recognition part 96.8 0.0031 1E-07 66.6 9.1 114 391-511 99-254 (433)
496 1rj9_A FTSY, signal recognitio 96.7 0.0045 1.6E-07 62.1 9.3 24 391-414 101-124 (304)
497 3qr0_A Phospholipase C-beta (P 96.7 0.0011 3.7E-08 75.0 5.2 122 12-152 163-308 (816)
498 2px0_A Flagellar biosynthesis 96.7 0.0024 8.1E-08 64.0 7.1 140 391-548 104-278 (296)
499 1sjj_A Actinin; 3-helix bundle 96.5 0.0013 4.3E-08 76.2 4.1 62 2-64 759-823 (863)
500 2lv7_A Calcium-binding protein 96.5 0.0049 1.7E-07 50.9 6.5 67 33-149 28-97 (100)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.8e-34 Score=278.62 Aligned_cols=169 Identities=36% Similarity=0.655 Sum_probs=145.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
+.+.+||+|+|++|||||||+++|+.+.|...+.+|+|.++..+.+.+++..+.++||||||+++|..++..|++.||++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.||..+..|+..+......++|+||||||+|+... +.|..+++..+++.+++.|++|||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~------r~V~~~e~~~~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK------RQVSIEEGERKAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG------CCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc------CcccHHHHhhHHHHhCCeeEEEeCCCCcCH
Confidence 99999999999999999999998888778999999999999754 668999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy8073 549 LDALIALSRHVYVFI 563 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~ 563 (593)
+++|..|++.+....
T Consensus 164 ~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 164 KQLFRRVAAALPGME 178 (216)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999886543
No 2
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.9e-29 Score=240.09 Aligned_cols=169 Identities=37% Similarity=0.708 Sum_probs=154.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+++|+++.+...+.+|+|.++....+.+++..+.+.||||||+++|..++..+++.||++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 35679999999999999999999999998888899999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.+|..+..|+..+......++|+|+|+||+|+... +.+....+..++...++.+++|||++|.||
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER------REVSQQRAEEFSEAQDMYYLETSAKESDNV 176 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------CSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc------cccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999998887777999999999999643 446778888889889999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy8073 549 LDALIALSRHVYVFI 563 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~ 563 (593)
+++|.+|.+.+..+.
T Consensus 177 ~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 177 EKLFLDLACRLISEA 191 (201)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887643
No 3
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=239.28 Aligned_cols=169 Identities=40% Similarity=0.705 Sum_probs=145.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+++|+++.+...+.+|+|.++....+.+++..+.+.||||||+++|..++..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 45679999999999999999999999988888889999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g~g 547 (593)
|+|||++++.++..+..|+..+......++|+|||+||+|+... +.+..+.+..++..+++ .+++|||++|.|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL------REVSLAEAQSLAEHYDILCAIETSAKDSSN 179 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG------CCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc------cccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 99999999999999999999998887677999999999999653 44777888899999999 999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy8073 548 ILDALIALSRHVYVFI 563 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~ 563 (593)
|+++|.+|.+.+.++.
T Consensus 180 i~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 180 VEEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987643
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=8.8e-29 Score=235.18 Aligned_cols=170 Identities=38% Similarity=0.729 Sum_probs=150.4
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
.....+||+|+|++|||||||+|+|+++.+...+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 34567999999999999999999999998887788888999999999999988999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
+|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+..+.+..++..+++.+++|||++|.|
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR------RDVKREEGEAFAREHGLIFMETSAKTACN 170 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG------CCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc------cccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999999999998877777999999999999643 34677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy8073 548 ILDALIALSRHVYVFI 563 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~ 563 (593)
|+++|.+|.+.+.++.
T Consensus 171 i~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 171 VEEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887643
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=234.18 Aligned_cols=171 Identities=36% Similarity=0.740 Sum_probs=156.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.++.|.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 35679999999999999999999999988888889999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+.......++..+++++++|||++|.||
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK------KVVDYTTAKEFADSLGIPFLETSAKNATNV 166 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT------CCSCHHHHHHHHHHTTCCEEEECTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc------cccCHHHHHHHHHHcCCcEEEEeCCCCCCH
Confidence 99999999999999999999999888778999999999999754 456778888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q psy8073 549 LDALIALSRHVYVFIPC 565 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~~ 565 (593)
+++|.+|.+.+..+...
T Consensus 167 ~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 167 EQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999886554
No 6
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=9.4e-29 Score=231.32 Aligned_cols=167 Identities=35% Similarity=0.735 Sum_probs=152.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988888889999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+..+.+..++..+++.+++|||++|.||
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ------RDVTYEEAKQFAEENGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG------CCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc------cccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999998887778999999999999643 346678888899999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy8073 549 LDALIALSRHVYV 561 (593)
Q Consensus 549 ~~l~~~L~~~l~~ 561 (593)
++++.+|.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 7
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=2.9e-29 Score=236.36 Aligned_cols=169 Identities=43% Similarity=0.832 Sum_probs=125.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|++..+...+.+|+|.++....+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45799999999999999999999998877778888899999889999998899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.++..+..|+..+......++|+++|+||+|+... +.+..+.+..++..+++++++|||++|.||+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK------RQVSKERGEKLALDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC------CCSCHHHHHHHHHHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc------CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999999998876667999999999999753 3467788889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q psy8073 550 DALIALSRHVYVFIP 564 (593)
Q Consensus 550 ~l~~~L~~~l~~~~~ 564 (593)
++|.+|.+.+.++..
T Consensus 160 ~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 160 NAFFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876543
No 8
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=1.4e-28 Score=233.25 Aligned_cols=168 Identities=33% Similarity=0.688 Sum_probs=153.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++++..++..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 34569999999999999999999999988888888999999989999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++..+++.+++|||++|.||
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE------RVVPAEDGRRLADDLGFEFFEASAKENINV 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG------CCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc------cCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999999998887667999999999999653 346677888999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy8073 549 LDALIALSRHVYVF 562 (593)
Q Consensus 549 ~~l~~~L~~~l~~~ 562 (593)
++++.+|.+.+.++
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 9
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=240.65 Aligned_cols=173 Identities=54% Similarity=0.937 Sum_probs=142.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.+||+|+|++|||||||+|+|+++.+...+.+|+|.++....+.+++..+.+.||||||+++|...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 35679999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|++||+||+|+.........+.+....+..++..+++++++|||++|.||
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 99999999999999999999998877667999999999999643221234567888889999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy8073 549 LDALIALSRHVYV 561 (593)
Q Consensus 549 ~~l~~~L~~~l~~ 561 (593)
+++|.+|.+.+.+
T Consensus 185 ~el~~~l~~~i~~ 197 (199)
T 2p5s_A 185 VEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 10
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=1.5e-28 Score=230.75 Aligned_cols=167 Identities=33% Similarity=0.604 Sum_probs=151.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+.....+|+|.++....+.+++..+.+.||||||++++...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988888888999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+..+.+..++..+++++++|||++|.||
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA------RKVTAEDAQTYAQENGLFFMETSAKTATNV 162 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT------CCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc------ccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999999999999998887667999999999999653 346778888899999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy8073 549 LDALIALSRHVYV 561 (593)
Q Consensus 549 ~~l~~~L~~~l~~ 561 (593)
++++.+|.+.+.+
T Consensus 163 ~~l~~~l~~~~~~ 175 (181)
T 2efe_B 163 KEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 11
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=2.2e-28 Score=234.50 Aligned_cols=170 Identities=35% Similarity=0.687 Sum_probs=154.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 34579999999999999999999999988888889999999999999999899999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++..+++++++|||++|.||
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE------RVVSSERGRQLADHLGFEFFEASAKDNINV 158 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS------CCSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc------cccCHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence 99999999999999999999998877667999999999999653 346778888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy8073 549 LDALIALSRHVYVFIP 564 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~ 564 (593)
+++|.+|.+.+.++.+
T Consensus 159 ~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 159 KQTFERLVDVICEKMS 174 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876543
No 12
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=8.4e-29 Score=229.44 Aligned_cols=165 Identities=36% Similarity=0.647 Sum_probs=150.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+|+|+++.+...+.++.|.++....+.+++..+.+.||||||++++...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45689999999999999999999999888888899999999999999998999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++..+++++++|||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK------RAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc------cccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999999998877677999999999999643 3466778888898999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8073 550 DALIALSRHVY 560 (593)
Q Consensus 550 ~l~~~L~~~l~ 560 (593)
+++.+|.+.+.
T Consensus 158 ~l~~~i~~~~~ 168 (170)
T 1r2q_A 158 EIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 13
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=1.7e-28 Score=231.61 Aligned_cols=170 Identities=38% Similarity=0.702 Sum_probs=154.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 35679999999999999999999999988888888999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++...++++++|||++|.||
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD------REVTFLEASRFAQENELMFLETSALTGENV 160 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------CCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc------cccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 99999999999999999999998887778999999999999643 346777888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy8073 549 LDALIALSRHVYVFIP 564 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~ 564 (593)
+++|.+|.+.+.++..
T Consensus 161 ~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 161 EEAFVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998886543
No 14
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=7.1e-29 Score=230.30 Aligned_cols=166 Identities=34% Similarity=0.655 Sum_probs=144.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+|+|+++.+...+.+|.|.++....+.+++..+.+.||||||++++..++..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45689999999999999999999999888888899999999889999988899999999999999988999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.++..+..|+..+......++|+++|+||+|+... +.+..+.+..++..+++++++|||++|.||+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE------RHVSIQEAESYAESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG------CCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc------cccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 9999999999999999999988776667999999999999653 3467788888999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy8073 550 DALIALSRHVYV 561 (593)
Q Consensus 550 ~l~~~L~~~l~~ 561 (593)
+++.+|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=9.7e-29 Score=229.02 Aligned_cols=166 Identities=37% Similarity=0.711 Sum_probs=150.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.+||+|+|++|||||||+|+|+++.+...+.+|.|.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 58999999999999999999999988888889999999999999999889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
||++++.++..+..|+..+......++|+++|+||+|+.... ..+.+....+..++..+++.+++|||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG---GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS---CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc---cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999988776779999999999996531 22457788888899999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8073 552 LIALSRHVY 560 (593)
Q Consensus 552 ~~~L~~~l~ 560 (593)
+.+|.+.+.
T Consensus 160 ~~~l~~~i~ 168 (170)
T 1ek0_A 160 FLGIGEKIP 168 (170)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHHh
Confidence 999987653
No 16
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=1.6e-28 Score=227.66 Aligned_cols=165 Identities=34% Similarity=0.611 Sum_probs=151.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+|+|++..+...+.++.|.++....+.+++..+.+.||||||++++..++..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 35689999999999999999999999988888999999999999999998999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.++..+..|+..+.......+|+++|+||+|+... +.+..+....++..+++++++|||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV------REVMERDAKDYADSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG------CCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc------cccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 9999999999999999999998887777999999999999753 3467788888999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8073 550 DALIALSRHVY 560 (593)
Q Consensus 550 ~l~~~L~~~l~ 560 (593)
+++.+|.+.+.
T Consensus 158 ~l~~~i~~~i~ 168 (170)
T 1z0j_A 158 ELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 17
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.7e-29 Score=236.30 Aligned_cols=169 Identities=33% Similarity=0.587 Sum_probs=152.2
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
....+.+||+|+|++|||||||+|+|++..+...+.+|+|.++....+.+++..+.+.||||||++++..++..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 34466799999999999999999999999988888999999999999999888899999999999999999999999999
Q ss_pred EEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCC
Q psy8073 467 GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD 546 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~ 546 (593)
++|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+..+.+..++..+++++++|||++|.
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI------REVPLKDAKEYAESIGAIVVETSAKNAI 171 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------CCSCHHHHHHHHHTTTCEEEECBTTTTB
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc------cccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 9999999999999999999999998887777999999999999643 3467788899999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy8073 547 NILDALIALSRHVYV 561 (593)
Q Consensus 547 gi~~l~~~L~~~l~~ 561 (593)
||++++.+|.+.+.+
T Consensus 172 gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 172 NIEELFQGISRQIPP 186 (192)
T ss_dssp SHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887654
No 18
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.1e-28 Score=229.51 Aligned_cols=169 Identities=44% Similarity=0.777 Sum_probs=143.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
....++|+|+|++|||||||+|+|++..+. ..+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999998874 4677888899988888899988999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
+|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++..+++++++|||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE------RVVKREDGEKLAKEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC------CCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc------cccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999999999999999998887777999999999999753 44677788889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy8073 548 ILDALIALSRHVYVFI 563 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~ 563 (593)
|++++.+|.+.+..+.
T Consensus 161 i~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 161 VDLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887543
No 19
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=2.8e-28 Score=234.43 Aligned_cols=171 Identities=37% Similarity=0.744 Sum_probs=155.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 34579999999999999999999999998888889999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|++||+||+|+... +.+..+.+..++..+++++++|||++|.||
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK------RVVEYDVAKEFADANKMPFLETSALDSTNV 158 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT------CCSCHHHHHHHHHHTTCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc------cccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999999998887777999999999999753 346777888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q psy8073 549 LDALIALSRHVYVFIPC 565 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~~ 565 (593)
+++|.+|.+.+.+....
T Consensus 159 ~~l~~~l~~~i~~~~~~ 175 (206)
T 2bcg_Y 159 EDAFLTMARQIKESMSQ 175 (206)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999988876543
No 20
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=233.04 Aligned_cols=168 Identities=30% Similarity=0.601 Sum_probs=153.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++++..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++...++.+++|||++|.||
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA------REVPTEEARMFAENNGLLFLETSALDSTNV 175 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG------CCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc------cccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999988776667999999999999653 346677888899899999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy8073 549 LDALIALSRHVYVF 562 (593)
Q Consensus 549 ~~l~~~L~~~l~~~ 562 (593)
++++.+|.+.+.++
T Consensus 176 ~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 176 ELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 21
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=234.64 Aligned_cols=167 Identities=35% Similarity=0.699 Sum_probs=145.1
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|+++.+...+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999988888889999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh-CCeEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~e~Sa~~g~g 547 (593)
|+|||++++.++..+..|+..+......++|++||+||+|+... +.+..+.+..++..+ ++.+++|||++|.|
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD------REITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------CCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc------cccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 99999999999999999999998887778999999999999653 346777788888875 78999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8073 548 ILDALIALSRHVYV 561 (593)
Q Consensus 548 i~~l~~~L~~~l~~ 561 (593)
|++++.+|.+.+.+
T Consensus 177 i~~l~~~l~~~i~~ 190 (192)
T 2il1_A 177 VDEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 22
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.2e-29 Score=237.42 Aligned_cols=170 Identities=36% Similarity=0.691 Sum_probs=155.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 35679999999999999999999999988888889999999999999998889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++..+++++++|||++|.||
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE------RVVPTEKGQLLAEQLGFDFFEASAKENISV 173 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG------CCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc------cccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999999999887778999999999999653 457788889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy8073 549 LDALIALSRHVYVFIP 564 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~ 564 (593)
+++|.+|.+.+.++..
T Consensus 174 ~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 174 RQAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887543
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=228.17 Aligned_cols=168 Identities=36% Similarity=0.641 Sum_probs=150.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.+||+|+|++|||||||+|+|++..+...+.++.|.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988888889999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+..... ++|+|+|+||+|+... +.+.......++..+++++++|||++|.||
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPER------KVVETEDAYKFAGQMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGG------CCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchh------cccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999999999887654 5899999999998653 446778888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy8073 549 LDALIALSRHVYVFI 563 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~ 563 (593)
++++.+|.+.+....
T Consensus 159 ~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 159 EEMFNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 24
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=1.8e-28 Score=227.34 Aligned_cols=165 Identities=38% Similarity=0.773 Sum_probs=144.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++++...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 35899999999999999999999998888888898999998899898888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
|||++++.++..+..|+..+......++|+++|+||+|+.. +.+..+.+..++..+++++++|||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-------RVVTADQGEALAKELGIPFIESSAKNDDNVNE 154 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-------CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc-------CccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999888777799999999999943 33667788889999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy8073 551 ALIALSRHVYVF 562 (593)
Q Consensus 551 l~~~L~~~l~~~ 562 (593)
++.+|.+.+.++
T Consensus 155 l~~~l~~~~~~~ 166 (170)
T 1g16_A 155 IFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 25
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=232.75 Aligned_cols=166 Identities=22% Similarity=0.401 Sum_probs=142.2
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
.....+||+|+|++|||||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.||||||+++|..+ ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999988888888988776 456778888999999999999998765 579999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcC---CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcC-C
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTE---NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSS-K 543 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa-~ 543 (593)
+|+|||++++.+|..+..|+..+..... .++|+|+|+||+|+... +.+..+.+..++..+++.|++||| +
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~e~Sa~~ 168 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY------RQVTKAEGVALAGRFGCLFFEVSACL 168 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG------CSSCHHHHHHHHHHHTCEEEECCSSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc------CccCHHHHHHHHHHcCCcEEEEeecC
Confidence 9999999999999999999998887642 46999999999999643 457788899999999999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8073 544 SGDNILDALIALSRHVYV 561 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~ 561 (593)
+|.||+++|..|++.+.+
T Consensus 169 ~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 169 DFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CSHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhh
Confidence 999999999999988764
No 26
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=232.74 Aligned_cols=168 Identities=23% Similarity=0.323 Sum_probs=143.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh-hhHhhccCCCE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS-MTKNYFRRADG 467 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~-~~~~~~~~ad~ 467 (593)
....+||+|+|++|||||||+++|++..+.....++.+.++....+.+++..+.+.||||+|++.+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 35679999999999999999999986543333445566778888888999999999999999988754 77888999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD 546 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~ 546 (593)
+|+|||++++.+|..+..|+..+..... .++|+|+|+||+|+... +.+..+.+..++..+++.+++|||++|.
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS------REVSLEEGRHLAGTLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT------CCSCHHHHHHHHHHTTCEEEEEBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc------CCcCHHHHHHHHHHhCCEEEEEcCCCCC
Confidence 9999999999999999999998877654 46999999999999753 4467788889999999999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy8073 547 NILDALIALSRHVYVF 562 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~ 562 (593)
||+++|.+|++.+...
T Consensus 174 ~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLR 189 (195)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988753
No 27
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=4.8e-28 Score=225.81 Aligned_cols=165 Identities=22% Similarity=0.369 Sum_probs=136.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh--hhhhhHhhccCCCEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER--FRSMTKNYFRRADGV 468 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~--~~~~~~~~~~~ad~v 468 (593)
+.+||+|+|++|||||||+|+|++..+.. ..++.|.++....+.+++..+.+.||||||++. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc-ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46899999999999999999999987644 455788888888899999889999999999987 567778899999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
|+|||++++.+|..+..|+..+.... ..++|+++|+||+|+... +.+..+.+..++..+++++++|||++|.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC------REVSVEEGRACAVVFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTT------CCSCHHHHHHHHHHHTSEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccc------cccCHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 99999999999999999998887653 346899999999999753 34667788888888999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy8073 548 ILDALIALSRHVYVF 562 (593)
Q Consensus 548 i~~l~~~L~~~l~~~ 562 (593)
|++++.+|.+.+..+
T Consensus 156 i~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 156 VAELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 28
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=2.6e-28 Score=229.32 Aligned_cols=168 Identities=29% Similarity=0.461 Sum_probs=148.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+|+|+++.+...+.+|.+.++ ...+.+++..+.+.||||||++.|..++..+++.+|++|
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4578999999999999999999998888888889988887 677888998899999999999999888999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+... +.+....+..++..++++|++|||++|.||
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME------RVISYEEGKALAESWNAAFLESSAKENQTA 156 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT------CCSCHHHHHHHHHHTTCEEEECCTTSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc------ceecHHHHHHHHHHhCCcEEEEecCCCCCH
Confidence 9999999999999999998886654 346899999999999653 557888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy8073 549 LDALIALSRHVYVFIP 564 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~ 564 (593)
+++|.+|.+.+.....
T Consensus 157 ~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 157 VDVFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999987543
No 29
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=2.5e-28 Score=225.90 Aligned_cols=165 Identities=38% Similarity=0.647 Sum_probs=149.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+|+|+++.+...+.+|.|.++....+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999999888888999999999999999998899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||++++.++..+..|+..+.... .++|+++|+||+|+... +.+....+..++..+++++++|||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD------SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGG------CSSCHHHHHHHHHHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcc------cccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence 9999999999999999999887766 46899999999999653 3466778888999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy8073 550 DALIALSRHVYV 561 (593)
Q Consensus 550 ~l~~~L~~~l~~ 561 (593)
+++.+|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 30
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=234.34 Aligned_cols=169 Identities=35% Similarity=0.690 Sum_probs=143.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|+++.+...+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 35679999999999999999999999988888888999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++...++.+++|||++|.||
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE------REVTFLEASRFAQENELMFLETSALTGENV 175 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG------CCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc------cccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999998877777999999999999643 346677888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy8073 549 LDALIALSRHVYVFI 563 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~ 563 (593)
+++|.+|.+.+.++.
T Consensus 176 ~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 176 EEAFLKCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 31
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=1.6e-28 Score=229.80 Aligned_cols=166 Identities=33% Similarity=0.554 Sum_probs=147.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECC-eeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDE-RNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~-~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
.+.+||+|+|++|||||||+++|+++.+...+.+|.|.++....+.+++ ..+.+.||||||++.|..++..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4569999999999999999999999988777788999999999998887 578999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcC--CCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTE--NSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSG 545 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g 545 (593)
|+|||++++.++..+..|+..+..... ...| +++|+||+|+... +.+..+.+..++..+++++++|||++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM------RTIKPEKHLRFCQENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG------CSSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc------cccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 999999999999999999998877532 1345 8999999999653 346777888899999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy8073 546 DNILDALIALSRHVYV 561 (593)
Q Consensus 546 ~gi~~l~~~L~~~l~~ 561 (593)
.||+++|.+|.+.+.+
T Consensus 158 ~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILG 173 (178)
T ss_dssp TTHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998865
No 32
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=3.8e-28 Score=234.47 Aligned_cols=175 Identities=38% Similarity=0.730 Sum_probs=151.6
Q ss_pred CCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhc
Q psy8073 383 LEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYF 462 (593)
Q Consensus 383 ~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~ 462 (593)
..........++|+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++.|..++..++
T Consensus 11 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 90 (213)
T 3cph_A 11 SGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY 90 (213)
T ss_dssp ---------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHH
T ss_pred cCCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHh
Confidence 33344556789999999999999999999999988888889999999999999999889999999999999999999999
Q ss_pred cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcC
Q psy8073 463 RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSS 542 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa 542 (593)
+.+|++|+|||++++.++..+..|+..+......++|+++|+||+|+.. +.+....+..++..+++++++|||
T Consensus 91 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~Sa 163 (213)
T 3cph_A 91 RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-------RVVTADQGEALAKELGIPFIESSA 163 (213)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS-------CCSCHHHHHHHHHHHTCCEEECBT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-------cccCHHHHHHHHHHcCCEEEEEeC
Confidence 9999999999999999999999999999888776799999999999942 336677788888889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcc
Q psy8073 543 KSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
++|.||++++.+|.+.+.++..
T Consensus 164 ~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 164 KNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp TTTBSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998877644
No 33
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=7.4e-28 Score=226.66 Aligned_cols=166 Identities=31% Similarity=0.568 Sum_probs=149.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.+||+|+|++|||||||+|+|+++.+...+.+|.+..+ .....+++..+.+.||||||++.+..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 45679999999999999999999999988888888888777 67788899889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCC-CCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK-SGD 546 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~-~g~ 546 (593)
|+|||++++.+|..+..|+..+... ...++|+++|+||+|+... +.+..+.+..++..++++|++|||+ +|.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL------RKVTRDQGKEMATKYNIPYIETSAKDPPL 167 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT------CCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc------cCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence 9999999999999999999888664 3467899999999999753 4578888999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHh
Q psy8073 547 NILDALIALSRHVYV 561 (593)
Q Consensus 547 gi~~l~~~L~~~l~~ 561 (593)
||+++|.+|.+.+.+
T Consensus 168 ~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 168 NVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998865
No 34
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=6.1e-28 Score=228.30 Aligned_cols=166 Identities=20% Similarity=0.343 Sum_probs=143.5
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
....+.+||+|+|++|||||||+++|+++.|...+.+|. .++ .+.+.+++..+.+.||||+|+++|. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 345677999999999999999999999998887777773 344 4788899999999999999998876 788899
Q ss_pred EEEEEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-CeEEEEcCCC
Q psy8073 467 GVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG-AIFMETSSKS 544 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~-~~~~e~Sa~~ 544 (593)
++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+... ..+.+..+.+..++..++ +.|++|||++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~----~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAA----NPRVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTT----BCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc----cccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 99999999999999999999999987653 46899999999999632 235688889999999997 8999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q psy8073 545 GDNILDALIALSRHVYVFI 563 (593)
Q Consensus 545 g~gi~~l~~~L~~~l~~~~ 563 (593)
|.||+++|.+|++.+..+.
T Consensus 164 ~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TBTHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 35
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=3.2e-28 Score=227.70 Aligned_cols=166 Identities=38% Similarity=0.688 Sum_probs=150.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
+...+||+|+|++|||||||+|+|++..+...+.+|.+.++....+.+++..+.+.||||||++++...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34569999999999999999999999988888889999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++..+++++++|||++|.|+
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK------RQVSTEEGERKAKELNVMFIETSAKAGYNV 164 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG------CCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc------CcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999999988877677999999999999653 346677888888889999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8073 549 LDALIALSRHVY 560 (593)
Q Consensus 549 ~~l~~~L~~~l~ 560 (593)
++++.+|.+.+.
T Consensus 165 ~~l~~~l~~~~~ 176 (179)
T 2y8e_A 165 KQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHh
Confidence 999999987664
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=6.9e-28 Score=225.84 Aligned_cols=169 Identities=27% Similarity=0.481 Sum_probs=149.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....++|+|+|++|||||||+|+|++..+...+.+|.+.++. ..+.+++..+.+.||||||+++|..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 456799999999999999999999999888888888887776 6778888888999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHH-HcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEE-VTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~-~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
|+|||++++.++..+..|+..+.. ....++|+++|+||+|+... +.+....+..++...++.+++|||++|.|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ------RQVPRSEASAFGASHHVAYFEASAKLRLN 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG------CCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------cccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 999999999999999999988744 44567999999999999653 44677888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy8073 548 ILDALIALSRHVYVFIP 564 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~~ 564 (593)
|++++.+|.+.+.....
T Consensus 159 v~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 159 VDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876543
No 37
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-28 Score=237.60 Aligned_cols=170 Identities=33% Similarity=0.626 Sum_probs=145.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....++|+|+|++|||||||+++|++..+...+.+|.|.++....+.+++..+.+.||||||+++|..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 45679999999999999999999999988888889999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.+|..+..|+..+......++|++||+||+|+... +.+....+..++..++++|++|||++|.||
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL------RAVPTEESKTFAQENQLLFTETSALNSENV 163 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG------CCSCHHHHHHHHHHTTCEEEECCCC-CCCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999998877667999999999999653 346777888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy8073 549 LDALIALSRHVYVFIP 564 (593)
Q Consensus 549 ~~l~~~L~~~l~~~~~ 564 (593)
+++|.+|.+.+.++..
T Consensus 164 ~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 164 DKAFEELINTIYQKVS 179 (223)
T ss_dssp HHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998876543
No 38
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=5.4e-28 Score=229.22 Aligned_cols=167 Identities=37% Similarity=0.716 Sum_probs=146.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh-hhhHhhccCCCE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR-SMTKNYFRRADG 467 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~-~~~~~~~~~ad~ 467 (593)
..+.+||+|+|++|||||||+|+|+++.+...+.+|.|.++....+.+++..+.+.||||||+++|. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3456999999999999999999999998888888999999999999999988999999999999997 889999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCC-
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSG- 545 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g- 545 (593)
+|+|||++++.++..+..|+..+.... ..++|+++|+||+|+... +.+..+.+..++..+++.+++|||++|
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA------IQVPTDLAQKFADTHSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG------CCSCHHHHHHHHHHTTCCEEECCSSSGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceeCHHHHHHHHHHcCCEEEEEeCCcCC
Confidence 999999999999999999999888765 456999999999999653 446778888999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHh
Q psy8073 546 --DNILDALIALSRHVYV 561 (593)
Q Consensus 546 --~gi~~l~~~L~~~l~~ 561 (593)
.||.++|.+|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887653
No 39
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=1.2e-27 Score=226.89 Aligned_cols=170 Identities=37% Similarity=0.662 Sum_probs=151.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeE-EEEEEECCe---------eEEEEEEecCCchhhhhhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQ-MKTIRVDER---------NVALQLWDTAGQERFRSMT 458 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~-~~~~~~~~~---------~~~~~l~DTaG~e~~~~~~ 458 (593)
....+||+|+|++|||||||+|+|+++.+...+.+|+|.++. ...+.+++. .+.+.||||||++++...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999999888888899998888 677777765 7899999999999999999
Q ss_pred HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 459 KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+... +.+..+.+..++..+++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~ 161 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ------RAVKEEEARELAEKYGIPY 161 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG------CCSCHHHHHHHHHHHTCCE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------cccCHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999998887764 56999999999999653 3466788888999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhcc
Q psy8073 538 METSSKSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
++|||++|.||++++.+|.+.+.++..
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998876543
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=1.1e-27 Score=223.82 Aligned_cols=166 Identities=33% Similarity=0.592 Sum_probs=145.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....++|+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++++...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 34568999999999999999999999988888889999999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcC----CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-HhCCeEEEEcCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTE----NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-QYGAIFMETSSK 543 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-~~~~~~~e~Sa~ 543 (593)
|+|||++++.++..+..|+..+..... .++|+++|+||+|+.. +.+..+.+..++. ..++++++|||+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-------RQVSTEEAQAWCRDNGDYPYFETSAK 156 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-------CSSCHHHHHHHHHHTTCCCEEECCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc-------cccCHHHHHHHHHhcCCceEEEEeCC
Confidence 999999999999999999998887654 5689999999999963 3366777888887 566789999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8073 544 SGDNILDALIALSRHVYV 561 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~ 561 (593)
+|.||++++.+|.+.+.+
T Consensus 157 ~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 157 DATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998875
No 41
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=7e-28 Score=229.44 Aligned_cols=170 Identities=28% Similarity=0.521 Sum_probs=149.3
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
.....+||+|+|++|||||||+|+|+++.+...+.+|.+.++. ..+.+++..+.+.||||||+++|..++..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 4567799999999999999999999999888888888887776 467788888999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHH-HHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe-EEEEcCCCC
Q psy8073 468 VMLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSG 545 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~-~~e~Sa~~g 545 (593)
+|+|||++++.++..+ ..|+..+.... .++|+|+|+||+|+... ..+.+..+.+..++..+++. +++|||++|
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKD----GSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCT----TTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccC----CCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 9999999999999997 56998888664 35899999999999753 13557788899999999998 999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q psy8073 546 DNILDALIALSRHVYVFI 563 (593)
Q Consensus 546 ~gi~~l~~~L~~~l~~~~ 563 (593)
.||+++|.+|.+.+..+.
T Consensus 173 ~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp BSHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999999987643
No 42
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=5.5e-28 Score=224.23 Aligned_cols=165 Identities=22% Similarity=0.325 Sum_probs=132.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh-hhHhhccCCCEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS-MTKNYFRRADGVML 470 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~-~~~~~~~~ad~vi~ 470 (593)
.+||+|+|++|||||||+++|++..+.....++.+.++....+.+++..+.+.+|||||++.+.. ++..+++.+|++|+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998776666666667888888899999999999999999998865 67778899999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|||++++.++..+..|+..+..... .++|+++|+||+|+... +.+....+..++..+++++++|||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS------REVSLEEGRHLAGTLSCKHIETSAALHHNTR 155 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG------CCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc------ccCCHHHHHHHHHHcCCcEEEecCccCCCHH
Confidence 9999999999999999998887654 46999999999999643 4578888999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy8073 550 DALIALSRHVYVF 562 (593)
Q Consensus 550 ~l~~~L~~~l~~~ 562 (593)
++|.+|.+.+..+
T Consensus 156 ~l~~~l~~~i~~~ 168 (169)
T 3q85_A 156 ELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
No 43
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=3.9e-28 Score=235.41 Aligned_cols=175 Identities=23% Similarity=0.405 Sum_probs=147.2
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
.....+||+|+|++|||||||+++|+++.+...+.+|+|.++ ...+.+++..+.+.||||||+++|..++..+++.||+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345679999999999999999999999998888889988777 4667788888999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHH-HHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhCC-eEEE
Q psy8073 468 VMLLYDVTNERSFNS-VKNWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGA-IFME 539 (593)
Q Consensus 468 vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~~-~~~e 539 (593)
+|+|||++++.+|.. +..|+..+..... ++|+|||+||+|+..... ....+.+....+..++..+++ .|++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 6889999988764 699999999999965210 011356888999999999999 9999
Q ss_pred EcCCCCCC-HHHHHHHHHHHHHhhcc
Q psy8073 540 TSSKSGDN-ILDALIALSRHVYVFIP 564 (593)
Q Consensus 540 ~Sa~~g~g-i~~l~~~L~~~l~~~~~ 564 (593)
|||++|.| |+++|.+|++.+.....
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred eccCCCcccHHHHHHHHHHHHhccCc
Confidence 99999998 99999999998876433
No 44
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=1.8e-27 Score=227.40 Aligned_cols=167 Identities=30% Similarity=0.584 Sum_probs=148.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCee----------------------------
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN---------------------------- 440 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~---------------------------- 440 (593)
....+||+|+|++|||||||+|+|++..+...+.+|+|.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4567999999999999999999999998888888999999998888887755
Q ss_pred ---------EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 441 ---------VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 441 ---------~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
+.+.||||||++.|..++..+++.+|++|+|||++++.++..+..|+..+..... +|+++|+||+|+ .
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~-~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK-N 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC-C
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc-c
Confidence 8899999999999999999999999999999999999999999999998887655 899999999993 2
Q ss_pred ccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhcc
Q psy8073 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 512 ~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
. +.+....+..++..+++++++|||++|.||++++.+|.+.+.++.+
T Consensus 161 ~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 161 K------FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp -------CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred c------ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 2 3466788888999999999999999999999999999999887543
No 45
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=8.3e-28 Score=222.33 Aligned_cols=163 Identities=21% Similarity=0.352 Sum_probs=122.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.+||+|+|++|||||||+|+|++..+ ....++.|.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997764 35567777776 46678899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
||++++.++..+..|+..+.... ..++|+++|+||+|+... +.+....+..++..+++++++|||++|.||++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS------REVSVDEGRACAVVFDCKFIETSAALHHNVQA 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS------CCSCHHHHHHHHHHTTCEEEECBGGGTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc------cccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Confidence 99999999999999988887653 356999999999999754 45778888899999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy8073 551 ALIALSRHVYVF 562 (593)
Q Consensus 551 l~~~L~~~l~~~ 562 (593)
+|.+|.+.+..+
T Consensus 154 l~~~l~~~~~~~ 165 (166)
T 3q72_A 154 LFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 46
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1e-27 Score=227.76 Aligned_cols=166 Identities=39% Similarity=0.691 Sum_probs=150.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.++|+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45689999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+....+..++..+++.+++|||++|.||
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-------REVDRNEGLKFARKHSMLFIEASAKTCDGV 165 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-------CCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-------cccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 9999999999999999998887654 24689999999999943 336677888899999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy8073 549 LDALIALSRHVYVF 562 (593)
Q Consensus 549 ~~l~~~L~~~l~~~ 562 (593)
++++.+|.+.+...
T Consensus 166 ~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 166 QCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999864
No 47
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.2e-27 Score=231.15 Aligned_cols=167 Identities=22% Similarity=0.341 Sum_probs=140.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCc--cccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh-hhhhhHhhccCC
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEV--FLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER-FRSMTKNYFRRA 465 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~--~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~-~~~~~~~~~~~a 465 (593)
....+||+|+|++|||||||+|+|++.. |...+ +++|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 3456999999999999999999999643 23333 4577888888899999889999999999887 566778889999
Q ss_pred CEEEEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCC
Q psy8073 466 DGVMLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKS 544 (593)
Q Consensus 466 d~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~ 544 (593)
|++|+|||++++.+|..+..|+..+.... ..++|+|||+||+|+... +.+....+..++..++++|++|||++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~------r~v~~~e~~~~a~~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC------REVSVSEGRACAVVFDCKFIETSAAV 186 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG------CCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC------ceEeHHHHHHHHHHcCCEEEEEeCCC
Confidence 99999999999999999999988776542 346999999999999643 44677788888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy8073 545 GDNILDALIALSRHVYVF 562 (593)
Q Consensus 545 g~gi~~l~~~L~~~l~~~ 562 (593)
|.||+++|.+|++.+..+
T Consensus 187 g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988654
No 48
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=1.3e-27 Score=223.92 Aligned_cols=163 Identities=18% Similarity=0.308 Sum_probs=138.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+++|+++.+.. +.+|+|..+ .+.+.+++..+.+.||||||+++ ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 456999999999999999999999998766 777877554 67788899889999999999886 45788999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcC---CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh-CCeEEEEcCCCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTE---NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSG 545 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~e~Sa~~g 545 (593)
+|||++++.+|..+..|+..+..... .++|+++|+||+|+... ..+.+..+.+..++..+ ++++++|||++|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~----~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS----SPRVVGDARARALXADMKRCSYYETXATYG 153 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTT----BCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc----ccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence 99999999999999998777766543 56899999999999532 12457788888888876 688999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q psy8073 546 DNILDALIALSRHVYVFI 563 (593)
Q Consensus 546 ~gi~~l~~~L~~~l~~~~ 563 (593)
.||+++|.+|.+.+....
T Consensus 154 ~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp BTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999887643
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=8.8e-28 Score=225.33 Aligned_cols=169 Identities=31% Similarity=0.568 Sum_probs=135.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC-CeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD-ERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~-~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
....++|+|+|++|||||||+++|++..+...+.+|.|.++....+.++ +..+.+.||||||++.+..++..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999998888888999999998888887 556889999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcC----CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-HhCCeEEEEcC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTE----NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-QYGAIFMETSS 542 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-~~~~~~~e~Sa 542 (593)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+... .+.+....+..++. ..++++++|||
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES-----KKIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-----GCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc-----cccCCHHHHHHHHHhcCCCeEEEEec
Confidence 9999999999999999999998877653 56899999999999643 23466777888887 45678999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q psy8073 543 KSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l~~~ 562 (593)
++|.||++++.+|.+.+.++
T Consensus 160 ~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.95 E-value=1.9e-27 Score=219.57 Aligned_cols=164 Identities=27% Similarity=0.525 Sum_probs=142.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
+.+||+|+|++|||||||+|+|+++.+...+.+|.+.++. ..+.+++..+.+.||||||++++..++..+++.+|++|+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4589999999999999999999999887777788776653 556788888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|||++++.++..+..|+..+..... .++|+++|+||+|+... +.+....+..++..+++++++|||++|.||+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK------RQVSVEEAKNRADQWNVNYVETSAKTRANVD 155 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG------CCSCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccccc------CccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 9999999999999999988877654 46999999999999653 3467788888999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy8073 550 DALIALSRHVYV 561 (593)
Q Consensus 550 ~l~~~L~~~l~~ 561 (593)
+++.+|.+.+.+
T Consensus 156 ~l~~~l~~~i~~ 167 (168)
T 1u8z_A 156 KVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 51
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=227.83 Aligned_cols=169 Identities=26% Similarity=0.489 Sum_probs=148.9
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
.....++|+|+|++|||||||+|+|+++.+...+.+|.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345679999999999999999999999988787888877665 4667788888899999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD 546 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~ 546 (593)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+... +.+....+..++..+++++++|||++|.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK------RQVSVEEAKNRAEQWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG------CCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc------ccccHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 9999999999999999999998887653 56999999999999653 3467788888999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc
Q psy8073 547 NILDALIALSRHVYVFI 563 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~~ 563 (593)
||+++|.+|.+.+..+.
T Consensus 163 gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 163 NVDKVFFDLMREIRARK 179 (206)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcc
Confidence 99999999999887753
No 52
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=5e-28 Score=232.01 Aligned_cols=172 Identities=24% Similarity=0.404 Sum_probs=143.7
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
....+.+||+|+|++|||||||+|+|+++.+...+.+|.+.++ ...+.+++..+.+.||||||++.|..++..+++.+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3456789999999999999999999999998888888888777 566677777899999999999999999999999999
Q ss_pred EEEEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCC
Q psy8073 467 GVMLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSG 545 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g 545 (593)
++|+|||++++.++..+..|+..+.... ..++|+|+|+||+|+... +.+....+..++..++++|++|||++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE------REVQAVEGKKLAESWGATFMESSAREN 171 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG------CCSCHHHHHHHHHHHTCEEEECCTTCH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc------cccCHHHHHHHHHHhCCeEEEEeCCCC
Confidence 9999999999999999999998887653 346899999999999753 457788889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q psy8073 546 DNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 546 ~gi~~l~~~L~~~l~~~~~~ 565 (593)
.||+++|.+|.+.+......
T Consensus 172 ~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 172 QLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999875443
No 53
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=1.6e-27 Score=220.33 Aligned_cols=163 Identities=31% Similarity=0.617 Sum_probs=143.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
+.+||+|+|++|||||||+|+|+++.+...+.+|.+..+. ..+.+++..+.+.||||||++++..++..+++.+|++|+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999999888788888876654 567788888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh-CCeEEEEcCCCCCCH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDNI 548 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~e~Sa~~g~gi 548 (593)
|||++++.++..+..|+..+.... ..++|+++|+||+|+... +.+..+.+..++..+ ++++++|||++|.|+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE------RVVGKEQGQNLARQWCNCAFLESSAKSKINV 154 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG------CCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc------ccCCHHHHHHHHHHccCCcEEEecCCCCCCH
Confidence 999999999999999988887653 456999999999999653 446677888888887 789999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8073 549 LDALIALSRHVY 560 (593)
Q Consensus 549 ~~l~~~L~~~l~ 560 (593)
++++.+|.+.+.
T Consensus 155 ~~l~~~l~~~i~ 166 (167)
T 1c1y_A 155 NEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=1.8e-27 Score=219.52 Aligned_cols=164 Identities=32% Similarity=0.580 Sum_probs=144.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
+.+||+|+|++|||||||+|+|+++.+...+.+|.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 358999999999999999999999988777777776444 6778889988899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|||++++.++..+..|+..+..... .++|+++|+||+|+... +.+....+..++..+++++++|||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 154 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE------REVSSSEGRALAEEWGCPFMETSAKSKTMVD 154 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG------CCSCHHHHHHHHHHHTSCEEEECTTCHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc------ccCCHHHHHHHHHHhCCCEEEecCCCCcCHH
Confidence 9999999999999999888876543 56999999999998643 4467778888999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy8073 550 DALIALSRHVYV 561 (593)
Q Consensus 550 ~l~~~L~~~l~~ 561 (593)
+++.+|.+.+.+
T Consensus 155 ~l~~~l~~~~~~ 166 (167)
T 1kao_A 155 ELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 55
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=6.7e-28 Score=233.77 Aligned_cols=171 Identities=36% Similarity=0.648 Sum_probs=150.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCe----------eEEEEEEecCCchhhhhhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER----------NVALQLWDTAGQERFRSMT 458 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~----------~~~~~l~DTaG~e~~~~~~ 458 (593)
....+||+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++. .+.+.||||||+++|..++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 456799999999999999999999999887778888888888888888766 7899999999999999999
Q ss_pred HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 459 KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
..+++.+|++|+|||++++.++..+..|+..+..... .++|+|||+||+|+... +.+....+..++..+++.+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~------~~v~~~~~~~~~~~~~~~~ 175 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ------REVNERQARELADKYGIPY 175 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG------CCSCHHHHHHHHHHTTCCE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc------cccCHHHHHHHHHHCCCcE
Confidence 9999999999999999999999999999887765443 56899999999999653 3467788889999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhccc
Q psy8073 538 METSSKSGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
++|||++|.||++++.+|.+.+.++...
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988775443
No 56
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=225.85 Aligned_cols=175 Identities=27% Similarity=0.422 Sum_probs=140.1
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
......+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.||||||+++|..++..+++++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3456789999999999999999999999988777788877555 466778888889999999999999989999999999
Q ss_pred EEEEEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEE
Q psy8073 467 GVMLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFM 538 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~ 538 (593)
++|+|||++++.++..+. .|+..+..... ++|+++|+||+|+...... ...+.+....+..++..+++ .|+
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999997 69998887654 6999999999999653110 01245778888899999887 899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 539 ETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
+|||++|.||+++|.+|.+.+.+..
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999887643
No 57
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=1.4e-27 Score=231.59 Aligned_cols=177 Identities=27% Similarity=0.479 Sum_probs=152.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCe-eEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER-NVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~-~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
....+||+|+|++|||||||+|+|+++.+...+.+|.|.++........+. .+.+.||||||++.+..++..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 356799999999999999999999998888888889888888777766543 4889999999999999899999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
+|+|||++++.++..+..|+..+......++|+++|+||+|+... +.+....+..++...++.+++|||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR------QKISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----------CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc------cccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999999999999999999999888777999999999999653 34777788888888899999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccCCC
Q psy8073 548 ILDALIALSRHVYVFIPCVYLKDL 571 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~~~~~~~~~ 571 (593)
|++++.+|.+.+............
T Consensus 162 v~~l~~~l~~~~~~~~~~~~~~~~ 185 (218)
T 4djt_A 162 FGLPFLHLARIFTGRPDLIFVSNV 185 (218)
T ss_dssp TTHHHHHHHHHHHCCTTCCBCSCC
T ss_pred HHHHHHHHHHHHhccccccccccc
Confidence 999999999999887666555443
No 58
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=7.5e-28 Score=231.17 Aligned_cols=169 Identities=25% Similarity=0.443 Sum_probs=112.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--ccccCCCCccceeeEEEEEEECCe--eEEEEEEecCCchhhhhhhHhhccCC
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--VFLNKLGSTLGVDFQMKTIRVDER--NVALQLWDTAGQERFRSMTKNYFRRA 465 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~g~~~~~~~~~~~~~--~~~~~l~DTaG~e~~~~~~~~~~~~a 465 (593)
...++|+|+|++|||||||+++|++. .+...+.+|.|.++....+.+++. .+.+.||||||++.|..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 777788889888888889988887 78999999999999999999999999
Q ss_pred CEEEEEEeCCChhcHHHHHHHHHHHHHHcC---CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcC
Q psy8073 466 DGVMLLYDVTNERSFNSVKNWVEAVEEVTE---NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSS 542 (593)
Q Consensus 466 d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa 542 (593)
|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+... .+.+..+.+..++..+++.+++|||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-----~~~v~~~~~~~~~~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQ-----RHQVRLDMAQDWATTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC------------CCCHHHHHHHHHHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchh-----hccCCHHHHHHHHHHcCCEEEEecc
Confidence 999999999999999999999999988776 67999999999999751 1346778889999999999999999
Q ss_pred CC-CCCHHHHHHHHHHHHHhhc
Q psy8073 543 KS-GDNILDALIALSRHVYVFI 563 (593)
Q Consensus 543 ~~-g~gi~~l~~~L~~~l~~~~ 563 (593)
++ |.||.++|.+|.+.+.+..
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp -------CHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHH
Confidence 99 9999999999999887543
No 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=3.6e-27 Score=226.51 Aligned_cols=168 Identities=30% Similarity=0.564 Sum_probs=148.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....++|+|+|++|||||||+|+|++..+...+.+|.|.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35679999999999999999999999988888889999999999999998889999999999999998899999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcC----CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-HhCCeEEEEcCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTE----NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-QYGAIFMETSSK 543 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-~~~~~~~e~Sa~ 543 (593)
|+|||++++.++..+..|+..+..... .++|+++|+||+|+.. +.+....+..++. ..++++++|||+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-------RQVATKRAQAWCYSKNNIPYFETSAK 157 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-------CCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc-------cccCHHHHHHHHHhcCCceEEEEeCC
Confidence 999999999999999999988877653 4689999999999963 2355667777777 567889999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q psy8073 544 SGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~~ 563 (593)
+|.||++++.+|.+.+.+..
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 158 EAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 60
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=6e-27 Score=220.62 Aligned_cols=167 Identities=26% Similarity=0.497 Sum_probs=146.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.+|.+..+ ...+.+++..+.+.||||||++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34579999999999999999999999988777778876665 45667888888999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
|+|||++++.++..+..|+..+..... .++|+++|+||+|+... +.+....+..++..+++++++|||++|.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK------RQVSVEEAKNRAEQWNVNYVETSAKTRAN 167 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG------CCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------CccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 999999999999999999988877654 46999999999999653 34677888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy8073 548 ILDALIALSRHVYVF 562 (593)
Q Consensus 548 i~~l~~~L~~~l~~~ 562 (593)
|++++.+|.+.+..+
T Consensus 168 i~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 168 VDKVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 61
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=2.4e-27 Score=223.85 Aligned_cols=171 Identities=23% Similarity=0.467 Sum_probs=145.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+++|+++.+...+.+|.+.++. ..+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 356799999999999999999999999888878888877764 5677888889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHH-HHHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhC-CeEEEE
Q psy8073 469 MLLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYG-AIFMET 540 (593)
Q Consensus 469 i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~-~~~~e~ 540 (593)
|+|||++++.+|..+ ..|+..+....+ ++|+++|+||+|+..... ....+.+..+.+..++..++ ++|++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 679988877654 589999999999964211 01125578888999999888 689999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHh
Q psy8073 541 SSK-SGDNILDALIALSRHVYV 561 (593)
Q Consensus 541 Sa~-~g~gi~~l~~~L~~~l~~ 561 (593)
||+ +|.||+++|..|.+.+.+
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999988764
No 62
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.2e-27 Score=223.24 Aligned_cols=169 Identities=27% Similarity=0.478 Sum_probs=146.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4668999999999999999999999988888888887666 456777888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEc
Q psy8073 470 LLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETS 541 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~S 541 (593)
+|||++++.+|..+. .|+..+....+ ++|+++|+||+|+...... ...+.+..+.+..++..+++ .|++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999987 69998887654 6899999999999754210 01245778889999999998 899999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRHVY 560 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~ 560 (593)
|++|.||+++|.+|.+.+.
T Consensus 174 a~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998875
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.8e-27 Score=223.55 Aligned_cols=166 Identities=30% Similarity=0.499 Sum_probs=145.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.||||||++. ...+..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4579999999999999999999999988888888887665 45677888889999999999888 777889999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCC-C
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD-N 547 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~-g 547 (593)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+... +.+....+..++..+++++++|||++|. |
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS------RQVSTEEGEKLATELACAFYECSACTGEGN 177 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG------CCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc------cccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence 9999999999999999998887754 357999999999999653 4477788889999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhc
Q psy8073 548 ILDALIALSRHVYVFI 563 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~ 563 (593)
|+++|.+|.+.+.++.
T Consensus 178 i~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 178 ITEIFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999887643
No 64
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=7.2e-27 Score=222.50 Aligned_cols=165 Identities=22% Similarity=0.355 Sum_probs=136.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcC--ccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh-hhhhhHhhccCCCE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKE--VFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER-FRSMTKNYFRRADG 467 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~-~~~~~~~~~~~ad~ 467 (593)
..+||+|+|++|||||||+|+|++. .+...+ +++|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+|+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4589999999999999999999963 333333 4567888888889999889999999999876 45677888999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD 546 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~ 546 (593)
+|+|||++++.+|..+..|+..+.... ..++|+|+|+||+|+... +.+....+..++..+++.|++|||++|.
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~------r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX------REVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG------CCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc------ccccHHHHHHHHHHhCCceEEeccccCC
Confidence 999999999999999999988887653 346899999999999643 4466777888888889999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy8073 547 NILDALIALSRHVYVF 562 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~ 562 (593)
||+++|.+|++.+...
T Consensus 158 ~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 158 NVKELFEGIVRQVRLR 173 (192)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=9.6e-27 Score=219.76 Aligned_cols=171 Identities=28% Similarity=0.546 Sum_probs=146.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..+||+|+|++|||||||+|+|+++.+...+.+|.+ +.....+.+++..+.+.||||||++.+..++..+++.+|++|+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 568999999999999999999999987777777764 4555677789988999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+....+..++..+++++++|||++|.||+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 154 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-------RTVDTKQAQDLARSYGIPFIETSAKTRQGVD 154 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-------CSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-------cccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 999999999999999999887754 35699999999999964 3366778888999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccC
Q psy8073 550 DALIALSRHVYVFIPCVYLK 569 (593)
Q Consensus 550 ~l~~~L~~~l~~~~~~~~~~ 569 (593)
+++.+|.+.+..........
T Consensus 155 ~l~~~l~~~~~~~~~~~~~~ 174 (189)
T 4dsu_A 155 DAFYTLVREIRKHKEKMSKD 174 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhcccc
Confidence 99999999988765544433
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=4.5e-27 Score=221.47 Aligned_cols=170 Identities=28% Similarity=0.496 Sum_probs=146.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.++|+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3568999999999999999999999988877788876555 466778898899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEc
Q psy8073 470 LLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETS 541 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~S 541 (593)
+|||++++.++..+. .|+..+....+ ++|+++|+||+|+...... ...+.+....+..++..+++ ++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 69998887755 6999999999998653210 01245778888899999997 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy8073 542 SKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~ 561 (593)
|++|.||++++.+|.+.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCccCHHHHHHHHHHHHhc
Confidence 99999999999999998864
No 67
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6e-27 Score=223.36 Aligned_cols=171 Identities=23% Similarity=0.402 Sum_probs=146.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...++|+|+|++|||||||+|+|+++.+...+.+|.+.++. ..+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45699999999999999999999999887777788776554 45667888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.. +.+....+..++..+++.+++|||++|.|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-------REVDTREAQAVAQEWKCAFMETSAKMNYN 157 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-------CSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-------cccCHHHHHHHHHHhCCeEEEEecCCCCC
Confidence 99999999999999888888877653 3689999999999964 23567778888889999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q psy8073 548 ILDALIALSRHVYVFIPCVYL 568 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~~~~~~ 568 (593)
|++++.+|.+.+..+......
T Consensus 158 i~~l~~~l~~~~~~~~~~~~~ 178 (199)
T 2gf0_A 158 VKELFQELLTLETRRNMSLNI 178 (199)
T ss_dssp HHHHHHHHHHHCSSSCEECC-
T ss_pred HHHHHHHHHHHHhhhhccccc
Confidence 999999999988766554433
No 68
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.6e-27 Score=218.14 Aligned_cols=164 Identities=27% Similarity=0.444 Sum_probs=141.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
+.+||+|+|++|||||||+|+|+++.+...+.+|.+.++. ..+.+++..+.+.||||||++++..++..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4589999999999999999999998877777778776554 456678888899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|||++++.++..+..|+..+..... .++|+++|+||+|+... +.+....+..++..+++++++|||++|.||
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS------REVQSSEAEALARTWKCAFMETSAKLNHNV 154 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG------CCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc------cccCHHHHHHHHHHhCCeEEEecCCCCcCH
Confidence 9999999999999889888877643 46899999999999653 346677788888889999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy8073 549 LDALIALSRHVYV 561 (593)
Q Consensus 549 ~~l~~~L~~~l~~ 561 (593)
++++.+|.+.+..
T Consensus 155 ~~l~~~l~~~~~~ 167 (172)
T 2erx_A 155 KELFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHhh
Confidence 9999999886643
No 69
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=4.4e-27 Score=227.15 Aligned_cols=172 Identities=30% Similarity=0.497 Sum_probs=145.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999988888888888665 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCcccc--ccccccCHHHHHHHHHHhCC-eEEEEcCCCC
Q psy8073 470 LLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQA--KGVKCIDREVGEKLAQQYGA-IFMETSSKSG 545 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~--~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~~g 545 (593)
+|||++++.+|..+. .|+..+....+ ++|+|||+||+|+...... .....+....+..++..+++ .|++|||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999987 69999987754 6999999999998653110 01123567888889999996 8999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q psy8073 546 DNILDALIALSRHVYVFI 563 (593)
Q Consensus 546 ~gi~~l~~~L~~~l~~~~ 563 (593)
.||+++|.+|.+.+....
T Consensus 165 ~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHhhhh
Confidence 999999999999887643
No 70
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=1.7e-27 Score=231.75 Aligned_cols=167 Identities=30% Similarity=0.552 Sum_probs=148.0
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
.....+||+|+|++|||||||+|+|+.+.+...+.+|+|+++....+.+++..+.+.||||||++.|..++..+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 34567999999999999999999988888788889999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
+|+|||++++.++..+..|+..+..... ++|+|+|+||+|+..... . .....++...++.|++|||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~-------~-~~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV-------K-AKSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS-------C-GGGCCHHHHHTCEEEECBGGGTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc-------c-HHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999999988764 589999999999975311 1 133456777889999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy8073 548 ILDALIALSRHVYVFI 563 (593)
Q Consensus 548 i~~l~~~L~~~l~~~~ 563 (593)
|+++|.+|.+.+....
T Consensus 162 i~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 162 FEKPFLWLARKLIGDP 177 (221)
T ss_dssp TTHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999998743
No 71
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=6.6e-27 Score=225.25 Aligned_cols=170 Identities=24% Similarity=0.469 Sum_probs=145.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|++..+...+.+|.+.++ ...+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4579999999999999999999999988888888888776 456777888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHH-HHHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhC-CeEEEEc
Q psy8073 470 LLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYG-AIFMETS 541 (593)
Q Consensus 470 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~-~~~~e~S 541 (593)
+|||++++.+|..+ ..|+..+..... ++|+|+|+||+|+..... ....+.+..+.+..++..++ +.|++||
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 99999999999998 679998887654 589999999999964211 01135578888999998888 6899999
Q ss_pred CC-CCCCHHHHHHHHHHHHHh
Q psy8073 542 SK-SGDNILDALIALSRHVYV 561 (593)
Q Consensus 542 a~-~g~gi~~l~~~L~~~l~~ 561 (593)
|+ +|.||+++|..|.+.+.+
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHhh
Confidence 99 689999999999988764
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=225.17 Aligned_cols=171 Identities=26% Similarity=0.522 Sum_probs=127.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999988777777776554 466778888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEc
Q psy8073 470 LLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETS 541 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~S 541 (593)
+|||++++.+|..+. .|+..+.... .++|+|+|+||+|+...... ...+.+....+..++..+++ .+++||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999987 6999888765 35899999999999754211 01245778888999999997 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHhh
Q psy8073 542 SKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~~ 562 (593)
|++|.||+++|.+|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988753
No 73
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=3e-27 Score=222.04 Aligned_cols=169 Identities=33% Similarity=0.555 Sum_probs=128.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|+++.+...+.+|.+..+. ..+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45699999999999999999999998877777777765553 33456666788899999999999999999999999999
Q ss_pred EEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCcccc----ccccccCHHHHHHHHHHhCC-eEEEEcCC
Q psy8073 470 LLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQA----KGVKCIDREVGEKLAQQYGA-IFMETSSK 543 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~----~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~ 543 (593)
+|||++++.++..+. .|+..+..... ++|+++|+||+|+...... .....+....+..++..+++ +|++|||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999997 59998887754 6999999999998654210 11233577888889999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy8073 544 SGDNILDALIALSRHVY 560 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~ 560 (593)
+|.||+++|.+|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998774
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=5e-26 Score=209.40 Aligned_cols=162 Identities=28% Similarity=0.590 Sum_probs=142.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEE
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v 471 (593)
.++|+|+|++|||||||+|+|++..+...+.+|.+..+ ...+.+++..+.+.||||||++++...+..++..+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999987777777766544 56677888889999999999999988899999999999999
Q ss_pred EeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 472 YDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 472 ~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
||++++.++..+..|+..+..... .++|+++|+||+|+... .+.......++..+++++++|||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-------TVESRQAQDLARSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-------CSCHHHHHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc-------ccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 999999999999999998877654 46999999999999652 3567778888989999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy8073 551 ALIALSRHVYV 561 (593)
Q Consensus 551 l~~~L~~~l~~ 561 (593)
++.+|.+.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=3.1e-26 Score=219.57 Aligned_cols=169 Identities=27% Similarity=0.508 Sum_probs=145.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+++|++..+...+.+|.+.++. ..+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45689999999999999999999999888888888887776 34678888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHH-HHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEc
Q psy8073 470 LLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETS 541 (593)
Q Consensus 470 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~S 541 (593)
+|||++++.++..+ ..|+..+..... ++|+++|+||+|+...... ...+.+....+..++..+++ .+++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 569888877654 5899999999999754210 01145778888899999988 899999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRHVY 560 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~ 560 (593)
|++|.||++++.+|.+.+.
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998775
No 76
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.94 E-value=7.2e-26 Score=214.51 Aligned_cols=165 Identities=28% Similarity=0.589 Sum_probs=134.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...++|+|+|++|||||||+|+|+++.+...+.+|.+..+ ...+.+++..+.+.||||||++++..++..+++.+|++|
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4568999999999999999999999887777777766544 466778888899999999999999989999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcC-CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTE-NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.. +.+....+..++..+++++++|||++|.|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-------RTVDTKQAHELAKSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-------CCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-------ccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999988877654 4689999999999964 235677888899999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy8073 549 LDALIALSRHVYVF 562 (593)
Q Consensus 549 ~~l~~~L~~~l~~~ 562 (593)
.+++.+|.+.+.+.
T Consensus 171 ~~l~~~l~~~~~~~ 184 (190)
T 3con_A 171 EDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 77
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.94 E-value=8.7e-29 Score=236.89 Aligned_cols=167 Identities=37% Similarity=0.768 Sum_probs=139.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|++|||||||+|+|++..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35679999999999999999999999988777788888999999999999889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
|+|||++++.++..+..|+..+......++|+|+|+||+|+... +.+....+..++..+++++++|||++|.||
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK------KVVDYTTAKEFADSLGIPFLETSAKNATNV 183 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--------CCCCSCC-CHHHHTTTCCBCCCCC---HHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc------ccCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999999998877777999999999999654 234444566788888999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy8073 549 LDALIALSRHVYV 561 (593)
Q Consensus 549 ~~l~~~L~~~l~~ 561 (593)
+++|.+|.+.+.+
T Consensus 184 ~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 184 EQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887754
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=2.8e-27 Score=225.03 Aligned_cols=166 Identities=25% Similarity=0.352 Sum_probs=137.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccC-----------CCCccceeeEEEEE-EECCeeEEEEEEecCCchhhhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK-----------LGSTLGVDFQMKTI-RVDERNVALQLWDTAGQERFRS 456 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~-----------~~~t~g~~~~~~~~-~~~~~~~~~~l~DTaG~e~~~~ 456 (593)
....+||+|+|++|||||||++.+.+.. ... +.+|.|.++....+ .+++..+.+.||||||+++|..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3567999999999999999997766543 333 34576777766655 6778889999999999999999
Q ss_pred hhHhhccCCCEEEEEEeCC------ChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH
Q psy8073 457 MTKNYFRRADGVMLLYDVT------NERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA 530 (593)
Q Consensus 457 ~~~~~~~~ad~vi~v~D~~------~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~ 530 (593)
++..+++.+|++|+|||++ +..++..+..|+..+. ....++|+++|+||+|+... +..+.+..++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--------~~~~~~~~~~ 160 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--------LPVEMVRAVV 160 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--------CCHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--------cCHHHHHHHH
Confidence 9999999999999999999 4566777777777663 23356999999999999653 6778888899
Q ss_pred HHhCC-eEEEEcCCCCCCHHHHHHHHHHHHHhhcc
Q psy8073 531 QQYGA-IFMETSSKSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 531 ~~~~~-~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
..+++ .+++|||++|.||+++|.+|.+.+.++..
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 88999 99999999999999999999999887543
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.94 E-value=1.7e-26 Score=221.94 Aligned_cols=169 Identities=28% Similarity=0.483 Sum_probs=141.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.+||+|+|++|||||||+++|+++.+...+.+|.+ +.....+.+++..+.+.||||||+++|..++..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35679999999999999999999999988777777775 44556777888889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhCC-eEEEE
Q psy8073 469 MLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGA-IFMET 540 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~~-~~~e~ 540 (593)
|+|||++++.++..+. .|+..+.... .++|+|+|+||+|+..... ....+.+....+..++..+++ ++++|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999997 6999888776 4699999999999875421 011234778888899999986 59999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy8073 541 SSKSGDNILDALIALSRHV 559 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l 559 (593)
||++|.||+++|.+|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998753
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=2.7e-26 Score=218.83 Aligned_cols=170 Identities=18% Similarity=0.319 Sum_probs=130.2
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCcccc-CCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCC
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLN-KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRA 465 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~a 465 (593)
......+||+|+|++|||||||+++|++..+.. .+.+|+|..+. .+.. ..+.+.||||||+++|..++..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEK--GRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEE--TTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEe--CCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 345677999999999999999999999998877 67888874443 3443 348899999999999999999999999
Q ss_pred CEEEEEEeCCChhcHHHHHHHHHHHHHHcC--------CCCcEEEEEeCCCCCCccccccccccCHHHHHH-HHHHhCCe
Q psy8073 466 DGVMLLYDVTNERSFNSVKNWVEAVEEVTE--------NSIPIVICANKVDLRADAQAKGVKCIDREVGEK-LAQQYGAI 536 (593)
Q Consensus 466 d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--------~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~-l~~~~~~~ 536 (593)
|++|+|||++++.+|..+..|+..+..... .++|+|||+||+|+..... ...+....... ++...++.
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT---AAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC---HHHHHHHHTHHHHHTTSCEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC---HHHHHHHhcchhhccCCeeE
Confidence 999999999999999999888877754311 2689999999999975411 11111111111 12446778
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 537 FMETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 537 ~~e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
+++|||++|.||+++|.+|.+.+..+.
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988754
No 81
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4e-26 Score=219.84 Aligned_cols=170 Identities=28% Similarity=0.505 Sum_probs=139.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...+||+|+|++|||||||+|+|++..+...+.+|.+.++.. .+.+++..+.+.||||||++++..++..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 346899999999999999999999998887777887776654 4678888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHH-HHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc------ccccccCHHHHHHHHHHhCC-eEEEEc
Q psy8073 470 LLYDVTNERSFNSV-KNWVEAVEEVTENSIPIVICANKVDLRADAQA------KGVKCIDREVGEKLAQQYGA-IFMETS 541 (593)
Q Consensus 470 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~------~~~~~v~~~~~~~l~~~~~~-~~~e~S 541 (593)
+|||++++.++..+ ..|+..+....+ ++|+++|+||+|+...... ...+.+....+..++..+++ .+++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 569988877653 5899999999999653110 01134777888889999888 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy8073 542 SKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~ 561 (593)
|++|.||++++.+|.+.+..
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998874
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=6.4e-26 Score=210.48 Aligned_cols=165 Identities=20% Similarity=0.315 Sum_probs=128.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.++|+|+|++|||||||+|+|+++.+. .+.+|.|. ....+.+++ +.+.||||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 456799999999999999999999998864 45667654 445566664 8899999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
|+|||++++.++..+..|+..+.... ..++|+++|+||+|+..... ...+........+...++++++|||++|.|
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---SSEMANSLGLPALKDRKWQIFKTSATKGTG 155 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---HHHHHHHhCchhccCCceEEEECcCCCCcC
Confidence 99999999999999888877665432 25689999999999975411 011111111112223456899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8073 548 ILDALIALSRHVYV 561 (593)
Q Consensus 548 i~~l~~~L~~~l~~ 561 (593)
|++++.+|.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (171)
T 1upt_A 156 LDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=9.1e-26 Score=214.00 Aligned_cols=161 Identities=17% Similarity=0.351 Sum_probs=129.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCc-cccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEV-FLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~-~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
..+.+||+|+|++|||||||+|+|++.. +...+.+|.| +....+.+++ +.+.||||||++++..++..+++.+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4567999999999999999999999887 5666777866 4556666665 789999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHcC---CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-----HhCCeEEE
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVTE---NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-----QYGAIFME 539 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-----~~~~~~~e 539 (593)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+... +.......... ..++.+++
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--------VTSVKVSQLLCLENIKDKPWHICA 165 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------CCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--------CCHHHHHHHhChhhccCCceEEEE
Confidence 9999999999999999888887766533 46999999999999653 23344444332 23568999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHh
Q psy8073 540 TSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
|||++|.||++++.+|.+.+.+
T Consensus 166 ~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 166 SDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp CBTTTTBTHHHHHHHHHHHC--
T ss_pred ccCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987754
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=4.7e-26 Score=217.94 Aligned_cols=156 Identities=18% Similarity=0.251 Sum_probs=121.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.++|+|+|++|||||||+++|+++.+ ..+.+|+|.+. ..+.+++ +.+.+|||||++.+..++..+++.+|++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 3458999999999999999999999875 45677877653 5666776 88999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH----------------
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ---------------- 532 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~---------------- 532 (593)
+|||++++.+|..+..|+..+... ...++|+++|+||+|+... +..+.+..+...
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--------ISEERLREMFGLYGQTTGKGSVSLKELN 169 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--------CCHHHHHHHHTCTTTCCCSSCCCTTTCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--------CCHHHHHHHhCccccccccccccccccc
Confidence 999999999999999998877654 2356999999999999642 445555555432
Q ss_pred -hCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 533 -YGAIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 533 -~~~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
.++.+++|||++|.||+++|.+|.+.
T Consensus 170 ~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 170 ARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 24579999999999999999998764
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=6.3e-26 Score=214.57 Aligned_cols=160 Identities=18% Similarity=0.317 Sum_probs=126.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.++|+|+|++|||||||+|+|+++.+. .+.+|.|.+. ..+.+++ +.+.||||||++++..++..+++.+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988766 6677877443 4555665 88999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH-----HHhCCeEEEEcCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA-----QQYGAIFMETSSK 543 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~-----~~~~~~~~e~Sa~ 543 (593)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+... .......... ...++.+++|||+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--------MTVAEISQFLKLTSIKDHQWHIQACCAL 160 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--------CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--------CCHHHHHHHhChhhhcCCCcEEEEccCC
Confidence 9999999999999999988776542 246899999999999653 2222322222 1235689999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy8073 544 SGDNILDALIALSRHVYVF 562 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~ 562 (593)
+|.||++++.+|.+.+...
T Consensus 161 ~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TTBTHHHHHHHHHHHHCC-
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.93 E-value=2.5e-25 Score=210.00 Aligned_cols=160 Identities=22% Similarity=0.402 Sum_probs=129.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.++|+|+|++|||||||+|+|+++. ...+.+|.|.+ ...+.+++ +.+.||||||++++...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888 66777887744 45566665 88999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHH-HH----HHhCCeEEEEcCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEK-LA----QQYGAIFMETSSK 543 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~-l~----~~~~~~~~e~Sa~ 543 (593)
+|||++++.++..+..|+..+... ...++|+++|+||+|+... ........ +. ...++++++|||+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--------LSCNAIQEALELDSIRSHHWRIQGCSAV 162 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--------CCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--------CCHHHHHHHhChhhccCCceEEEEeeCC
Confidence 999999999999998888776553 2356899999999999754 11222211 11 1235679999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy8073 544 SGDNILDALIALSRHVYVF 562 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~ 562 (593)
+|.||++++.+|.+.+.++
T Consensus 163 ~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 163 TGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.93 E-value=2.2e-26 Score=212.25 Aligned_cols=161 Identities=22% Similarity=0.421 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
+||+|+|++|||||||+|+|+++.+.. +.+|.| +....+..+ ++.+.||||||++++..++..+++.+|++|+||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887654 566766 334444444 488999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 473 DVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 473 D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
|++++.++..+..|+..+... ...++|+++|+||+|+..... ...+........+...++++++|||++|.||+++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC---HHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence 999999999998888776543 234689999999999965311 0111111111111123457999999999999999
Q ss_pred HHHHHHHHHh
Q psy8073 552 LIALSRHVYV 561 (593)
Q Consensus 552 ~~~L~~~l~~ 561 (593)
+.+|.+.+.+
T Consensus 153 ~~~l~~~i~~ 162 (164)
T 1r8s_A 153 LDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.93 E-value=3.2e-26 Score=216.93 Aligned_cols=163 Identities=26% Similarity=0.398 Sum_probs=129.6
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
....+.+||+|+|++|||||||+|+|+++.+...+.+|+|.++.. +... .+.+.||||||+++|..++..+++.+|
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 344667999999999999999999999998877788888877653 3344 488999999999999999999999999
Q ss_pred EEEEEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHH-HHHHH----HHhCCeEEEE
Q psy8073 467 GVMLLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREV-GEKLA----QQYGAIFMET 540 (593)
Q Consensus 467 ~vi~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~-~~~l~----~~~~~~~~e~ 540 (593)
++|+|||++++.++..+..|+..+... ...++|+++|+||+|+.... .... ...+. ...++.+++|
T Consensus 93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 164 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--------DEKELIEKMNLSAIQDREICCYSI 164 (188)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--------CHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--------CHHHHHHHhChhhhccCCeeEEEE
Confidence 999999999999999998888776543 22569999999999997531 1111 11111 1234578999
Q ss_pred cCCCCCCHHHHHHHHHHHHHh
Q psy8073 541 SSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
||++|.||++++.+|.+.+..
T Consensus 165 SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 165 SCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTTCTTHHHHHHHHHHTCC-
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.93 E-value=1.2e-25 Score=211.88 Aligned_cols=159 Identities=21% Similarity=0.397 Sum_probs=125.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...++|+|+|++|||||||+++|++..+ ..+.+|+|.+ ...+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 5679999999999999999999998864 4567787744 44566664 88999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHH-HH----HHhCCeEEEEcCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEK-LA----QQYGAIFMETSSK 543 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~-l~----~~~~~~~~e~Sa~ 543 (593)
+|||++++.++..+..|+..+... ...++|+++|+||+|+.... ....... +. ...++.+++|||+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--------PASEIAEGLNLHTIRDRVWQIQSCSAL 160 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--------CHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--------CHHHHHHHhCchhccCCceEEEEccCC
Confidence 999999999999998888766432 23568999999999997531 1111111 11 1234579999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8073 544 SGDNILDALIALSRHVYV 561 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~ 561 (593)
+|.||+++|.+|.+.+.+
T Consensus 161 ~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp TCTTHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887654
No 90
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.93 E-value=7.4e-25 Score=209.56 Aligned_cols=166 Identities=33% Similarity=0.655 Sum_probs=146.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
..++|+|+|++|||||||+++|++..+...+.+|.|.++....+.+++..+.+.||||+|++++..++..+++.+|++|+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46899999999999999999999998888888999999999999999988999999999999998888999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~ 550 (593)
|||+++..++..+..|+..+........|+++|+||+|+... +.+....+..++...++.+++|||+++.|+.+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL------RAVPTDEARAFAEKNNLSFIETSALDSTNVEE 157 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG------CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc------cCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999999888998887665567899999999999643 34566778889999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy8073 551 ALIALSRHVYVF 562 (593)
Q Consensus 551 l~~~L~~~l~~~ 562 (593)
++.+|.+.+.+.
T Consensus 158 l~~~l~~~~~~~ 169 (199)
T 2f9l_A 158 AFKNILTEIYRI 169 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.93 E-value=1.8e-25 Score=212.30 Aligned_cols=156 Identities=19% Similarity=0.307 Sum_probs=126.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.++|+|+|++|||||||+++|+++.+. .+.+|++.+ ...+.+++ +.+.+|||||++.+..++..+++.+|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45679999999999999999999998864 567777664 45667776 88999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH------------hCCe
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ------------YGAI 536 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~------------~~~~ 536 (593)
+|||++++.+|..+..|+..+... ...++|+++|+||+|+... +..+.+...... .++.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--------VSEAELRSALGLLNTTGSQRIEGQRPVE 167 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--------CCHHHHHHHTTCSSCCC---CCSSCCEE
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC--------CCHHHHHHHhCCccccccccccccceEE
Confidence 999999999999999988877653 2356999999999999652 344444443321 3457
Q ss_pred EEEEcCCCCCCHHHHHHHHHHH
Q psy8073 537 FMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 537 ~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
+++|||++|.||+++|.+|.+.
T Consensus 168 ~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 168 VFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEeECCcCCCHHHHHHHHHhh
Confidence 9999999999999999998753
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.93 E-value=1e-25 Score=212.04 Aligned_cols=158 Identities=18% Similarity=0.311 Sum_probs=125.6
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCE
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADG 467 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~ 467 (593)
...+.+||+|+|++|||||||+|+|+++.+ ..+.+|+|.++ ..+.+++ +.+.||||||++++..++..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 445679999999999999999999999987 66778877654 4555665 889999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH-----HHhCCeEEEEc
Q psy8073 468 VMLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA-----QQYGAIFMETS 541 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~-----~~~~~~~~e~S 541 (593)
+|+|||++++.++..+..|+..+.... ..++|+++|+||+|+... .......... ...++.+++||
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--------MTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--------CCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--------CCHHHHHHHhCcccccCCceEEEEcc
Confidence 999999999999999988887776532 356899999999999653 2222222221 12345799999
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRH 558 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~ 558 (593)
|++|.||++++.+|.+.
T Consensus 164 a~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTTBTHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999998753
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.93 E-value=3.9e-26 Score=215.67 Aligned_cols=166 Identities=18% Similarity=0.385 Sum_probs=124.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC--ccccCCCCccceeeEEEEEEE---CCeeEEEEEEecCCchhhhhhhHhhccCCC
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKE--VFLNKLGSTLGVDFQMKTIRV---DERNVALQLWDTAGQERFRSMTKNYFRRAD 466 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~g~~~~~~~~~~---~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad 466 (593)
.+||+|+|++|||||||+++|++. .+.+.+.+|+|.++....+.+ ++..+.+.+|||||+++|..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 556667888888887776654 345678999999999999888999999999
Q ss_pred EEEEEEeCCCh-hcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe----EEEEc
Q psy8073 467 GVMLLYDVTNE-RSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI----FMETS 541 (593)
Q Consensus 467 ~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~----~~e~S 541 (593)
++++|||++++ .++..+..|+..+..... ++|+|+|+||+|+..... ...+....+..++..++++ |++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQ---RKACMSKITKELLNKRGFPAIRDYHFVN 157 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHH---HHHHHHHHHHHTTTCTTSCEEEEEEECC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchh---hHHHHHHHHHHHHHhcCCcchhheEEEe
Confidence 99999999997 578889999998876543 589999999999965311 0001133455566666776 99999
Q ss_pred CCCCC-CHHHHHHHHHHHHHh
Q psy8073 542 SKSGD-NILDALIALSRHVYV 561 (593)
Q Consensus 542 a~~g~-gi~~l~~~L~~~l~~ 561 (593)
|++|. |+.+++..|.+.+..
T Consensus 158 a~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 158 ATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTSCCHHHHHHHHHHHHHHHC
T ss_pred cccCchhHHHHHHHHHHHHhc
Confidence 99997 999999999887764
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=7e-26 Score=215.59 Aligned_cols=164 Identities=19% Similarity=0.398 Sum_probs=121.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+++|+++.+.. +.+|.| +....+...+ +.+.||||||++++..++..+++.+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 467999999999999999999999887653 456765 4445555554 88999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
+|||++++.++..+..|+..+... ...++|+++|+||+|+..... ...+....+...+...++++++|||++|.||
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP---VSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC---HHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 999999999999998888777543 234689999999999965310 0111111111111123457999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy8073 549 LDALIALSRHVYV 561 (593)
Q Consensus 549 ~~l~~~L~~~l~~ 561 (593)
++++.+|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987753
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=2.4e-25 Score=209.24 Aligned_cols=160 Identities=18% Similarity=0.313 Sum_probs=125.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.++|+|+|++|||||||+++|+++.+ ..+.+|+|.. ...+.+++ +.+.+|||||++++...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999998886 5677887744 44556665 88999999999999989999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH-----HhCCeEEEEcCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ-----QYGAIFMETSSK 543 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~-----~~~~~~~e~Sa~ 543 (593)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+... ........... ..++++++|||+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 162 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--------LSASEVSKELNLVELKDRSWSIVASSAI 162 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--------CCHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--------CCHHHHHHHhCcccccCCceEEEEccCC
Confidence 9999999999999988887775543 356899999999999653 12222222211 123479999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy8073 544 SGDNILDALIALSRHVYVF 562 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~ 562 (593)
+|.||++++.+|.+.+.++
T Consensus 163 ~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 163 KGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GTBTHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 96
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=2.6e-24 Score=204.58 Aligned_cols=164 Identities=34% Similarity=0.661 Sum_probs=147.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
...++|+|+|++|||||||+++|++..+...+.+|+|.++....+.+++..+.+.+|||+|++++..++..+++.++++|
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45689999999999999999999999888888899999999999999998888999999999999888999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~ 549 (593)
+|||+++..++..+..|+..+........|+++|+||+|+... +.+....+..++...++.+++|||+++.|+.
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL------RAVPTDEARAFAEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc------cccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999998888988877665566899999999999643 3456677888999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8073 550 DALIALSRHV 559 (593)
Q Consensus 550 ~l~~~L~~~l 559 (593)
+++..|.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.92 E-value=1.9e-25 Score=211.48 Aligned_cols=165 Identities=24% Similarity=0.382 Sum_probs=127.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+|+|+++.+.. +.+|.|. ....+.+++ +.+.||||||++++...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 457999999999999999999999887654 5667664 344555664 88999999999999888999999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+..... ...+........+...++++++|||++|.||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 9999999999999888877665432 24689999999999965311 0111111111111223457999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy8073 549 LDALIALSRHVYVF 562 (593)
Q Consensus 549 ~~l~~~L~~~l~~~ 562 (593)
++++.+|.+.+.++
T Consensus 172 ~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 172 VEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988753
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.92 E-value=1.8e-24 Score=223.31 Aligned_cols=171 Identities=26% Similarity=0.478 Sum_probs=147.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....++|+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 34569999999999999999999999988777888876555 56677888888999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccc------cccccccCHHHHHHHHHHhCC-eEEEE
Q psy8073 469 MLLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGA-IFMET 540 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~------~~~~~~v~~~~~~~l~~~~~~-~~~e~ 540 (593)
|+|||++++.++..+. .|+..+..... ++|+++|+||+|+..... ....+.+....+..++..+++ +|++|
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999987 69988887665 699999999999864311 011256788889999999997 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHh
Q psy8073 541 SSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
||++|.||+++|..|.+.+..
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=2.7e-25 Score=212.08 Aligned_cols=168 Identities=20% Similarity=0.250 Sum_probs=125.2
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEE--EEC-CeeEEEEEEecCCchhhhhhh---Hh
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI--RVD-ERNVALQLWDTAGQERFRSMT---KN 460 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~--~~~-~~~~~~~l~DTaG~e~~~~~~---~~ 460 (593)
....+.+||+|+|++|||||||++++.+.. ... +|.|.++....+ .+. +..+.+.||||||+++|.... ..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 345677999999999999999999888753 332 444444443333 332 566889999999999997776 79
Q ss_pred hccCCCEEEEEEeCCCh--hcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc-cccccccCHHHHHHHHH----Hh
Q psy8073 461 YFRRADGVMLLYDVTNE--RSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ-AKGVKCIDREVGEKLAQ----QY 533 (593)
Q Consensus 461 ~~~~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~-~~~~~~v~~~~~~~l~~----~~ 533 (593)
+++.||++|+|||++++ .++..+..|+..+... ..++|++||+||+|+..... ....+.+....+..++. .+
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 99999999999999997 5555666666665433 34699999999999875311 01234566677788888 67
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 534 GAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 534 ~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
++.|++|||++ .||.++|..|++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 88999999999 99999999998764
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=9.2e-27 Score=223.59 Aligned_cols=168 Identities=27% Similarity=0.495 Sum_probs=139.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.||||||+++|..++..+++.+|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 5679999999999999999999999887777777766544 455667777788999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccccc------cccccCHHHHHHHHHHhCC-eEEEEc
Q psy8073 470 LLYDVTNERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQAK------GVKCIDREVGEKLAQQYGA-IFMETS 541 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~------~~~~v~~~~~~~l~~~~~~-~~~e~S 541 (593)
+|||++++.++..+. .|+..+..... ++|+++|+||+|+....... ..+.+....+..++..+++ ++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999887 68888876544 68999999999997532100 0124556677788888887 899999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRHV 559 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l 559 (593)
|++|.||++++.+|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999988754
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=2.1e-24 Score=200.08 Aligned_cols=153 Identities=19% Similarity=0.202 Sum_probs=116.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh------hhhHhhcc--
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR------SMTKNYFR-- 463 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~------~~~~~~~~-- 463 (593)
.++|+|+|++|||||||+|+|++..+.....++.+.++....+.+++ ..+.+|||||+++|. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998765443334444556666666666 689999999988774 45566765
Q ss_pred CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCC
Q psy8073 464 RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~ 543 (593)
.+|++++|||+++.. ....|+..+.. .++|+|+|+||+|+... +.+.. .+..++..+++++++|||+
T Consensus 81 ~~~~~i~v~D~~~~~---~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~------~~~~~-~~~~~~~~~~~~~~~~SA~ 147 (165)
T 2wji_A 81 KPDLVVNIVDATALE---RNLYLTLQLME---MGANLLLALNKMDLAKS------LGIEI-DVDKLEKILGVKVVPLSAA 147 (165)
T ss_dssp CCSEEEEEEETTCHH---HHHHHHHHHHH---TTCCEEEEEECHHHHHH------TTCCC-CHHHHHHHHTSCEEECBGG
T ss_pred CCCEEEEEecCCchh---HhHHHHHHHHh---cCCCEEEEEEchHhccc------cChhh-HHHHHHHHhCCCEEEEEcC
Confidence 899999999998753 34457766654 35899999999998543 11221 3567788889999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy8073 544 SGDNILDALIALSRHV 559 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l 559 (593)
+|.||+++|.+|.+.+
T Consensus 148 ~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 148 KKMGIEELKKAISIAV 163 (165)
T ss_dssp GTBSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=1.2e-23 Score=196.62 Aligned_cols=159 Identities=18% Similarity=0.257 Sum_probs=122.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.++|+|+|++|||||||+++|++..+.....++.+.++....+.+++ ..+.||||||+++|..++..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45679999999999999999999999987776666666677767777777 5688999999999988888999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH-------HHhC--CeEEE
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA-------QQYG--AIFME 539 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~-------~~~~--~~~~e 539 (593)
|+|||++++...... ..+......++|+++|+||+|+.... ........ ..++ +.+++
T Consensus 83 i~v~d~~~~~~~~~~----~~l~~~~~~~~p~ilv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV----EAINHAKAANVPIIVAINKMDKPEAN---------PDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp EEEEETTCCCCHHHH----HHHHHHGGGSCCEEEEEETTTSSCSC---------HHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred EEEEECCCCCcHHHH----HHHHHHHhCCCCEEEEEECccCCcCC---------HHHHHHHHHhcCcChhHcCCcccEEE
Confidence 999999985443322 23333334468999999999997531 11111111 1222 57999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 540 TSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
|||++|.||++++.+|.+.+...
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHT
T ss_pred EecCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999987753
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.91 E-value=6.6e-25 Score=218.57 Aligned_cols=165 Identities=24% Similarity=0.327 Sum_probs=125.5
Q ss_pred CCCcceEEEEEcCC---------CCcHHHHHHHHhc---CccccCCCCcc-ceeeEEEEE--------------EECCee
Q psy8073 388 EPDRAFKIVFAGDA---------AVGKSCFIYRFSK---EVFLNKLGSTL-GVDFQMKTI--------------RVDERN 440 (593)
Q Consensus 388 ~~~~~~kI~ivG~~---------nvGKSSLln~l~~---~~~~~~~~~t~-g~~~~~~~~--------------~~~~~~ 440 (593)
.....+||+|+|++ |||||||+|+|++ ..+...+.+|. |.++..+.+ .+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35667999999999 9999999999998 55555555553 444433322 245677
Q ss_pred EEEEEEe-----------------------cCCchhhhhhhHhhcc---------------------CCCEEEEEEeCCC
Q psy8073 441 VALQLWD-----------------------TAGQERFRSMTKNYFR---------------------RADGVMLLYDVTN 476 (593)
Q Consensus 441 ~~~~l~D-----------------------TaG~e~~~~~~~~~~~---------------------~ad~vi~v~D~~~ 476 (593)
+.+.||| ++|+++|..++..+++ +||++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 7788888888888887 7999999999999
Q ss_pred h--hcHHHHHHHHHHHHHH-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH-hCCeEEEEcCCCCCCHHHHH
Q psy8073 477 E--RSFNSVKNWVEAVEEV-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ-YGAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 477 ~--~s~~~~~~~~~~i~~~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~-~~~~~~e~Sa~~g~gi~~l~ 552 (593)
+ .+|..+..|+..+... ...++|+|||+||+|+... +.+ +.+..++.. .++.+++|||++|.||+++|
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~------~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf 246 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE------RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAF 246 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH------HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc------HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHH
Confidence 8 9999999999988765 3456999999999999643 222 456677765 47889999999999999999
Q ss_pred HHHHHHHH
Q psy8073 553 IALSRHVY 560 (593)
Q Consensus 553 ~~L~~~l~ 560 (593)
.+|++.+.
T Consensus 247 ~~l~~~l~ 254 (255)
T 3c5h_A 247 STLVQLID 254 (255)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998764
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.90 E-value=1.6e-23 Score=214.10 Aligned_cols=165 Identities=20% Similarity=0.331 Sum_probs=130.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcC--ccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh-----hhhhHhhc
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKE--VFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF-----RSMTKNYF 462 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~--~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~-----~~~~~~~~ 462 (593)
..+||+|+|++|||||||+|+|+++ .+. ..+++|.+.++.. +.+++ .+.+.||||||+++| ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999887 222 3567787666653 44444 589999999999988 67888999
Q ss_pred cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHc--CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC---CeE
Q psy8073 463 RRADGVMLLYDVTNERSFNSVKNWVEAVEEVT--ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG---AIF 537 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~---~~~ 537 (593)
+++|++|+|||++++.++.++..|...+.... ..++|+++|+||+|+...........+....+..++..+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999987766555442 3459999999999997631111111255677888999887 789
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q psy8073 538 METSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
++|||++ .|+.+++..+++.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 89999998887644
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=5.9e-23 Score=200.78 Aligned_cols=164 Identities=17% Similarity=0.156 Sum_probs=117.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc------hh----hhhhhH
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ------ER----FRSMTK 459 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~------e~----~~~~~~ 459 (593)
...++|+|+|++|||||||+|+|++..+.....+....++....+..++ +.+.||||||+ ++ +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 4579999999999999999999999876422222222344444444454 78999999998 44 222 23
Q ss_pred hhccCCCEEEEEEeCCChhcHHH--HHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCH---HHHHHHHHHhC
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNS--VKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDR---EVGEKLAQQYG 534 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~---~~~~~l~~~~~ 534 (593)
.++..+|++|+|||++++.+|.. ...|+..+.... .++|+++|+||+|+... +.+.. .....++...+
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~ 176 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM------DSLSIDNKLLIKQILDNVK 176 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--------CCCHHHHHHHHHHHHHCC
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc------hhhHHHHHHHHHHHHHhcC
Confidence 45788999999999999888742 233554444321 26899999999999753 22333 24566777776
Q ss_pred --CeEEEEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 535 --AIFMETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 535 --~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
+.+++|||++|.||+++|.+|.+.+....
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 177 NPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999887654
No 106
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=3.8e-25 Score=238.07 Aligned_cols=196 Identities=20% Similarity=0.214 Sum_probs=119.3
Q ss_pred CCCCCCCCch-hhhcCCCCCCCCCCcccccCCCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--e
Q psy8073 351 YDYNKRDYPE-LRRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--V 427 (593)
Q Consensus 351 ~d~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~ 427 (593)
|||+|++++. .++.+...+..+...+..+..........+.+++|+|+|+||||||||+|+|++..+ ..+...+| .
T Consensus 191 iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~ 269 (476)
T 3gee_A 191 LDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTR 269 (476)
T ss_dssp SSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHCC----------------
T ss_pred cCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceE
Confidence 8999987763 233332222222223322222222233456789999999999999999999998752 22333333 4
Q ss_pred eeEEEEEEECCeeEEEEEEecCCchhhhh--------hhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc
Q psy8073 428 DFQMKTIRVDERNVALQLWDTAGQERFRS--------MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP 499 (593)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~DTaG~e~~~~--------~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p 499 (593)
++....+.+++ +.+.||||||++.+.. .+..++..||++|+|||++++.++..+..|...+.... ++|
T Consensus 270 d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~p 345 (476)
T 3gee_A 270 DYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAK 345 (476)
T ss_dssp ---CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSE
T ss_pred EEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCC
Confidence 45555666766 7899999999876543 34567899999999999999988764444444444333 589
Q ss_pred EEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 500 iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
+|+|+||+|+..... + ....+.....+++++|||++|.||++++.+|.+.+.
T Consensus 346 iIvV~NK~Dl~~~~~------~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 346 FLTVANKLDRAANAD------A---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEEEEECTTSCTTTH------H---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEEEECcCCCCccc------h---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999999975411 1 113344432367999999999999999999999886
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.90 E-value=4.5e-23 Score=199.24 Aligned_cols=166 Identities=21% Similarity=0.276 Sum_probs=114.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCe-eEEEEEEecCCchhhhh-hhHhhccCCCE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER-NVALQLWDTAGQERFRS-MTKNYFRRADG 467 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~-~~~~~l~DTaG~e~~~~-~~~~~~~~ad~ 467 (593)
.+.+||+|+|++|||||||+++|+++.+...+.++ +.++. .+.+++. .+.+.||||||+++|.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45689999999999999999999998876666543 34443 3666644 58899999999999977 78889999999
Q ss_pred EEEEEeCCChh-cHHHHHH-HHHHHHHH--cCCCCcEEEEEeCCCCCCccccccc----------------cc-------
Q psy8073 468 VMLLYDVTNER-SFNSVKN-WVEAVEEV--TENSIPIVICANKVDLRADAQAKGV----------------KC------- 520 (593)
Q Consensus 468 vi~v~D~~~~~-s~~~~~~-~~~~i~~~--~~~~~piivV~NK~Dl~~~~~~~~~----------------~~------- 520 (593)
+|+|||+++.. ++..+.. |...+... ...++|+++|+||+|+......... ..
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999853 4555554 55554442 3446899999999999754211000 00
Q ss_pred -----cCHHHHHHHHH-Hh--CCeEEEEcCCCC------CCHHHHHHHHHHH
Q psy8073 521 -----IDREVGEKLAQ-QY--GAIFMETSSKSG------DNILDALIALSRH 558 (593)
Q Consensus 521 -----v~~~~~~~l~~-~~--~~~~~e~Sa~~g------~gi~~l~~~L~~~ 558 (593)
+....+..++. .+ ++.|++|||++| .||+++|.+|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00000001111 11 567999999999 9999999999875
No 108
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.90 E-value=1.3e-23 Score=196.13 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=115.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcccc-CCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh--------hhhHh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLN-KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR--------SMTKN 460 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~--------~~~~~ 460 (593)
..+++|+|+|++|||||||+|+|++..+.. ...++.+.++....+.+++ ..+.+|||||++++. .....
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 356899999999999999999999875321 1122233566777788887 568999999986431 11235
Q ss_pred hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEE
Q psy8073 461 YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMET 540 (593)
Q Consensus 461 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~ 540 (593)
+++.||++|+|||++++.++.. ..|+..+......++|+|+|+||+|+..... . ++...++.+++|
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----~---------~~~~~~~~~~~~ 145 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL----G---------MSEVNGHALIRL 145 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC----E---------EEEETTEEEEEC
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh----h---------hhhccCCceEEE
Confidence 6899999999999999888763 4688877776666799999999999854210 0 111235689999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q psy8073 541 SSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l~ 560 (593)
||++|.||+++|.+|.+.+.
T Consensus 146 SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 146 SARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTTCTTHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999988764
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.90 E-value=7.6e-24 Score=218.60 Aligned_cols=165 Identities=20% Similarity=0.410 Sum_probs=120.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
..+.+||+|+|++|||||||+++|+++.+.... +|.+..+ ..+...+ +.+.||||||++.|..++..+++.+|++
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 456789999999999999999999998865443 5655444 3444444 8899999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHH-HcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEE-VTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~-~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
|+|||++++.+|..+..|+..+.. ....++|+|||+||+|+..... ...+........+...+++|++|||++|.|
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 999999999999998887665543 3334699999999999975411 011111111111112345799999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8073 548 ILDALIALSRHVYV 561 (593)
Q Consensus 548 i~~l~~~L~~~l~~ 561 (593)
|+++|.+|.+.+.+
T Consensus 314 i~el~~~l~~~l~~ 327 (329)
T 3o47_A 314 LYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=6.9e-24 Score=231.68 Aligned_cols=168 Identities=19% Similarity=0.375 Sum_probs=126.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGV 468 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~v 468 (593)
....+||+|+|.+|||||||+|+|++..+. .+.+|+|.++. .+.+. ++.+.||||||++.|..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEESS--SCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEeC--CEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 456799999999999999999999998854 45667665554 34444 48899999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHH-H----HHHhCCeEEEEcC
Q psy8073 469 MLLYDVTNERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEK-L----AQQYGAIFMETSS 542 (593)
Q Consensus 469 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~-l----~~~~~~~~~e~Sa 542 (593)
|+|||++++.+|..+..|+..+.... ..++|+|||+||+|+... ........ + +...++.+++|||
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~SA 465 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--------MKPHEIQEKLGLTRIRDRNWYVQPSCA 465 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--------CCHHHHHHHTTCTTCCSSCEEEEECBT
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--------CCHHHHHHHhchhhhhcCCeEEEEEEC
Confidence 99999999999999998877775432 256999999999999653 11111111 1 1122346999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhccccccC
Q psy8073 543 KSGDNILDALIALSRHVYVFIPCVYLK 569 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l~~~~~~~~~~ 569 (593)
++|.||+++|.+|.+.+.++.+..++.
T Consensus 466 ~~g~gi~~l~~~l~~~~~~~~~~~~~~ 492 (497)
T 3lvq_E 466 TSGDGLYEGLTWLTSNYKSKLAAALEH 492 (497)
T ss_dssp TTTBTHHHHHHHHHHHCC---------
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcc
Confidence 999999999999999887766655443
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=3.9e-23 Score=195.13 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=123.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh------hhhHhhcc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR------SMTKNYFR 463 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~------~~~~~~~~ 463 (593)
.+.++|+|+|++|||||||+|+|++..+.....++.+.++....+.+++ +.+.||||||++.+. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3568999999999999999999998765444445555666666677765 789999999988774 45666664
Q ss_pred --CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 464 --RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 464 --~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
.+|++++|+|+++ +.....|+..+.. .++|+|+|+||+|+.... .+. ..+..++..+++++++||
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~------~~~-~~~~~~~~~~~~~~~~~S 149 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSL------GIE-IDVDKLEKILGVKVVPLS 149 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHT------TCC-CCHHHHHHHHTSCEEECB
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccc------cch-HHHHHHHHHhCCCeEEEE
Confidence 5999999999975 4556667766654 468999999999985431 122 245677888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc
Q psy8073 542 SKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~~~ 563 (593)
|++|.||++++.+|.+.+....
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999887644
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.89 E-value=2.8e-23 Score=197.31 Aligned_cols=158 Identities=22% Similarity=0.294 Sum_probs=112.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC----------chhhhhhhH
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG----------QERFRSMTK 459 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG----------~e~~~~~~~ 459 (593)
...++|+|+|++|||||||+|+|++..+...+.+++|+++......+++ .+.|||||| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4578999999999999999999999987777888888887777666654 589999999 778888888
Q ss_pred hhccCC---CEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCH--HHHHH-HHHHh
Q psy8073 460 NYFRRA---DGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDR--EVGEK-LAQQY 533 (593)
Q Consensus 460 ~~~~~a---d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~--~~~~~-l~~~~ 533 (593)
.+++.+ |++|+|||++++.++.... ++..+.. .++|+++|+||+|+.... .+.. ..+.. ++...
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~------~~~~~~~~~~~~~~~~~ 167 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKG------KWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGG------GHHHHHHHHHHHHTCCT
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChH------HHHHHHHHHHHHHcccC
Confidence 888777 9999999999988876643 2222222 458999999999997541 1111 12222 33234
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 534 GAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 534 ~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
++.+++|||++|.||++++.+|.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 678999999999999999999988764
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.89 E-value=3e-24 Score=217.72 Aligned_cols=161 Identities=20% Similarity=0.229 Sum_probs=123.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccc---CCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh---hhHhhccCCCE
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLN---KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS---MTKNYFRRADG 467 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~---~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~---~~~~~~~~ad~ 467 (593)
||+++|+.|||||||++++.++.+.. .+.+|+|.++.. ++ ..+.++||||||+++|.. .+..||++|++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 69999999999999999988764433 357888888764 23 347899999999999964 47899999999
Q ss_pred EEEEEeCCChhcHHHHHHH---HHHHHHHcCCCCcEEEEEeCCCCCCccc-cccccccCHHHHHHHHHH----hCCeEEE
Q psy8073 468 VMLLYDVTNERSFNSVKNW---VEAVEEVTENSIPIVICANKVDLRADAQ-AKGVKCIDREVGEKLAQQ----YGAIFME 539 (593)
Q Consensus 468 vi~v~D~~~~~s~~~~~~~---~~~i~~~~~~~~piivV~NK~Dl~~~~~-~~~~~~v~~~~~~~l~~~----~~~~~~e 539 (593)
+|+|||++++ .+.....| +..+.... .++|+++||||+|+..... ....+.|..+.++.+++. +++.|++
T Consensus 76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEECCCSSC-TTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999998 33333333 44444433 4699999999999975421 111255777788888875 6789999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 540 TSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
|||++ .||.++|..|++.+.++
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred eccCC-CcHHHHHHHHHHHHHhh
Confidence 99998 58999999998866543
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.89 E-value=1.3e-22 Score=207.36 Aligned_cols=173 Identities=13% Similarity=0.131 Sum_probs=131.2
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCe-eEEEEEEecCCchh----------hh
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER-NVALQLWDTAGQER----------FR 455 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~-~~~~~l~DTaG~e~----------~~ 455 (593)
..+.+.-.|+|+|.||||||||+|+|++..+. ..+++++++.......+... ++.+.||||||+.. +.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 34566789999999999999999999998753 34444455544333333322 48899999999743 34
Q ss_pred hhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-
Q psy8073 456 SMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG- 534 (593)
Q Consensus 456 ~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~- 534 (593)
..+..+++.+|++|+|||++++.++.+...|+..+.. .++|+|+|+||+|+... ..........+...++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~------~~~~~~~~~~l~~~~~~ 154 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGP------AKNVLPLIDEIHKKHPE 154 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSS------GGGGHHHHHHHHHHCTT
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCC------HHHHHHHHHHHHHhccC
Confidence 6677889999999999999999998887777777665 35899999999999732 2244556677777775
Q ss_pred -CeEEEEcCCCCCCHHHHHHHHHHHHHhhccccccCC
Q psy8073 535 -AIFMETSSKSGDNILDALIALSRHVYVFIPCVYLKD 570 (593)
Q Consensus 535 -~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~~~~ 570 (593)
+.+++|||++|.|+++++.+|.+.+.. .+.+++.+
T Consensus 155 ~~~i~~vSA~~g~gv~~L~~~l~~~l~~-~~~~~~~~ 190 (308)
T 3iev_A 155 LTEIVPISALKGANLDELVKTILKYLPE-GEPLFPED 190 (308)
T ss_dssp CCCEEECBTTTTBSHHHHHHHHHHHSCB-CCCSSCTT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHhCcc-CCCCCCcc
Confidence 679999999999999999999998875 44444443
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.88 E-value=8.3e-23 Score=192.95 Aligned_cols=155 Identities=25% Similarity=0.356 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC-----------chhhhhhhHhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG-----------QERFRSMTKNY 461 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG-----------~e~~~~~~~~~ 461 (593)
+||+|+|++|||||||+|+|++..+...+.++ +++....+.+. .+.|||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPG--VTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTT--CTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCC--ccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 69999999999999999999998866554443 45555555554 589999999 67888888888
Q ss_pred ccC-CCEEEEEEeCCChhcHHHH-HHHHHH---------HHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH
Q psy8073 462 FRR-ADGVMLLYDVTNERSFNSV-KNWVEA---------VEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA 530 (593)
Q Consensus 462 ~~~-ad~vi~v~D~~~~~s~~~~-~~~~~~---------i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~ 530 (593)
++. ++++++||++.+..++..+ ..|... +......++|+++|+||+|+.... ...+..++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------~~~~~~~~ 146 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---------QEVINFLA 146 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---------HHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---------HHHHHHHH
Confidence 887 8888888888888888776 557642 233334569999999999997541 45677788
Q ss_pred HHhCCe-------EEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 531 QQYGAI-------FMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 531 ~~~~~~-------~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
..++++ +++|||++|.||++++.+|.+.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 147 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 888764 69999999999999999999988764
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.88 E-value=1.8e-22 Score=185.24 Aligned_cols=150 Identities=21% Similarity=0.196 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchh-------hhhhhHhhccC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER-------FRSMTKNYFRR 464 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~-------~~~~~~~~~~~ 464 (593)
+||+|+|++|||||||+++|++..+. ....++.+.++....+.+++ ..+.||||||++. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988642 12222333455666666776 5789999999876 45566778999
Q ss_pred CCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCC
Q psy8073 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSK 543 (593)
Q Consensus 465 ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~ 543 (593)
+|++|+|||++++.+... ..+...+.. .++|+++|+||+|+.... ..+..++ .+++ .+++|||+
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----------~~~~~~~-~~~~~~~~~~Sa~ 144 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----------LYLGPLY-GLGFGDPIPTSSE 144 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----------GGCGGGG-GGSSCSCEECBTT
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----------HhHHHHH-hCCCCCeEEEecc
Confidence 999999999998765433 112222222 348999999999997541 1122334 4566 79999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy8073 544 SGDNILDALIALSRHV 559 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l 559 (593)
+|.|+++++.+|.+.+
T Consensus 145 ~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 145 HARGLEELLEAIWERL 160 (161)
T ss_dssp TTBSHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHhC
Confidence 9999999999998764
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.88 E-value=3.7e-22 Score=189.14 Aligned_cols=159 Identities=22% Similarity=0.331 Sum_probs=120.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC----------chhhhhhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG----------QERFRSMT 458 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG----------~e~~~~~~ 458 (593)
....++|+|+|++|||||||+|+|++.. ...+.++.|+++.......+. .+.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 3566899999999999999999999987 455677777777666655554 578999999 67777777
Q ss_pred HhhccCC---CEEEEEEeCCChhcHHH--HHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 459 KNYFRRA---DGVMLLYDVTNERSFNS--VKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 459 ~~~~~~a---d~vi~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
..+++.+ |++++|+|++++.+... +..|+... ++|+++|+||+|+.... ......+.+..++..+
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~----~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMS----ERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGG----GHHHHHHHHHHHHHSS
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChH----HHHHHHHHHHHHHhhc
Confidence 7777766 99999999988655433 23343322 58999999999997541 1223344555666554
Q ss_pred C-CeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 534 G-AIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 534 ~-~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
+ +++++|||++|.||+++|.+|.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 4 689999999999999999999988754
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.88 E-value=1.4e-22 Score=201.75 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=118.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh------hhHhhc-
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS------MTKNYF- 462 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~------~~~~~~- 462 (593)
.+.++|+|+|++|||||||+|+|++..+. .+..+|+++..+...+...++.+.||||||+..+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 45689999999999999999999987654 233445566555555544448899999999877643 345565
Q ss_pred -cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 463 -RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 463 -~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
..+|++|+|||+++..+. ..|...+.. .++|+|+|+||+|+.... .+. .....++..+++++++||
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~------~i~-~~~~~l~~~lg~~vi~~S 147 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKT------GMK-IDRYELQKHLGIPVVFTS 147 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHT------TCC-BCHHHHHHHHCSCEEECC
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCcc------chH-HHHHHHHHHcCCCEEEEE
Confidence 589999999999986543 235544443 368999999999985431 122 135678888999999999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy8073 542 SKSGDNILDALIALSRHVY 560 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~ 560 (593)
|++|.||++++.+|.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.87 E-value=1.6e-22 Score=202.60 Aligned_cols=154 Identities=20% Similarity=0.267 Sum_probs=119.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh------hhhHhhcc-
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR------SMTKNYFR- 463 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~------~~~~~~~~- 463 (593)
..++|+|+|+||||||||+|+|++..+ .++..+|+++..+...++. ++.+.||||||+..+. .++..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~--~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCC--CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 358999999999999999999998752 2445567777777777776 6789999999998774 45666775
Q ss_pred -CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcC
Q psy8073 464 -RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSS 542 (593)
Q Consensus 464 -~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa 542 (593)
.+|++|+|||+++..+. ..|...+.. .++|+|+|+||+|+... +.+. .....++..+++++++|||
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~------~~~~-~~~~~l~~~lg~~vi~~SA 145 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDG------QGKK-INVDKLSYHLGVPVVATSA 145 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHH------TTCC-CCHHHHHHHHTSCEEECBT
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCc------CCcH-HHHHHHHHHcCCCEEEEEc
Confidence 69999999999886443 345555544 35899999999998543 1122 2456778888999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy8073 543 KSGDNILDALIALSRHVY 560 (593)
Q Consensus 543 ~~g~gi~~l~~~L~~~l~ 560 (593)
++|.||+++|.+|.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999987654
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.87 E-value=4.2e-22 Score=193.55 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=119.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEEC-CeeEEEEEEecCC----------chhhhhhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD-ERNVALQLWDTAG----------QERFRSMT 458 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~-~~~~~~~l~DTaG----------~e~~~~~~ 458 (593)
...++|+|+|.+|||||||+|+|++..+......+.|++.......+. ..+..+.|||||| ++.|..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 456899999999999999999999987545566677777666666665 4457899999999 45566666
Q ss_pred HhhccC---CCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH---
Q psy8073 459 KNYFRR---ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ--- 532 (593)
Q Consensus 459 ~~~~~~---ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~--- 532 (593)
..+++. +|++|+|+|++++.+... ..|+..+.. .++|+|+|+||+|+...... ..........+...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQES---INALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhH---HHHHHHHHHHHHhhhhc
Confidence 667665 888999999998655332 335444443 45899999999999754110 00111112223332
Q ss_pred ---hCCeEEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 533 ---YGAIFMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 533 ---~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
.++++++|||++|.||.+++.+|.+.+...
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 456899999999999999999999988653
No 121
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.86 E-value=1.4e-22 Score=223.07 Aligned_cols=164 Identities=21% Similarity=0.354 Sum_probs=125.1
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEE------EEE--CCeeEEEEEEecCCchhhhhhhHh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKT------IRV--DERNVALQLWDTAGQERFRSMTKN 460 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~------~~~--~~~~~~~~l~DTaG~e~~~~~~~~ 460 (593)
....+||+|+|.+|||||||+|+|++..+...+.+|+|.++..+. +.+ ++..+.+.||||||++.|..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 467799999999999999999999999888888899988887653 222 334588999999999999999999
Q ss_pred hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEE
Q psy8073 461 YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMET 540 (593)
Q Consensus 461 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~ 540 (593)
+++.+|++|+|||+++. +.+..|+..+..... ++|+|||+||+|+... +.+....+..++...++++++|
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~------~~v~~~~~~~~~~~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPS------YNIEQKKINERFPAIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTT------CCCCHHHHHHHCGGGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccc------cccCHHHHHHHHHhcCCceEEE
Confidence 99999999999999865 456779888888765 5899999999999753 3466777788888888999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhh
Q psy8073 541 SSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
||++|.||++++.+|.+.+...
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCT
T ss_pred ecCcccCHHHHHHHHHHHHhcc
Confidence 9999999999999999988753
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=4e-22 Score=198.21 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh----------hhHhhc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS----------MTKNYF 462 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~----------~~~~~~ 462 (593)
++|+|+|++|||||||+|+|++..+.....++.+++.....+.+++ ..+.||||||+..+.. ++..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 5899999999999999999998864333333333455556666666 5899999999876643 566677
Q ss_pred --cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEE
Q psy8073 463 --RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMET 540 (593)
Q Consensus 463 --~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~ 540 (593)
..+|++|+|+|+++..++..+..| ....++|+|+|+||+|+..... .. . ....++..+++++++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~------l~~~~~pvilv~NK~Dl~~~~~---~~-~---~~~~l~~~lg~~vi~~ 146 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ------LFELGKPVVVALNMMDIAEHRG---IS-I---DTEKLESLLGCSVIPI 146 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH------HTTSCSCEEEEEECHHHHHHTT---CE-E---CHHHHHHHHCSCEEEC
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH------HHHcCCCEEEEEEChhcCCcCC---cH-H---HHHHHHHHcCCCEEEE
Confidence 899999999999986554443332 2344689999999999864311 11 1 2345777889999999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy8073 541 SSKSGDNILDALIALSRH 558 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~ 558 (593)
||++|.|+++++.+|.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
No 123
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=4.7e-23 Score=221.95 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=115.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCch-hhh--------hhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE-RFR--------SMT 458 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e-~~~--------~~~ 458 (593)
.+.+++|+|+|+||||||||+|+|++..+. ....++.+.++....+.+++ +.+.||||||+. .+. ..+
T Consensus 240 ~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~ 317 (482)
T 1xzp_A 240 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERT 317 (482)
T ss_dssp HHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHH
T ss_pred ccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHH
Confidence 356799999999999999999999987531 11112222556667777776 789999999987 543 345
Q ss_pred HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEE
Q psy8073 459 KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFM 538 (593)
Q Consensus 459 ~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 538 (593)
..+++.||++|+|||++++.++.+.. ++..+ .++|+|+|+||+|+... +.......+.. .+++++
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--------~~~~~~~~~~~-~~~~~i 382 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--------INEEEIKNKLG-TDRHMV 382 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--------CCHHHHHHHHT-CSTTEE
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--------cCHHHHHHHhc-CCCcEE
Confidence 67889999999999999998886643 32322 25899999999999642 22333333322 346799
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 539 ETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
+|||++|.||++++.+|.+.+..
T Consensus 383 ~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 383 KISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp EEEGGGTCCHHHHHHHHHHHTHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999997653
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=3.1e-21 Score=196.25 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=113.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh--------hhhhhHhhc
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER--------FRSMTKNYF 462 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~--------~~~~~~~~~ 462 (593)
+..+|+|+|.||||||||+|+|++..+. .++..++++.......+...+..+.||||||+.. +......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee-eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4568999999999999999999998753 2223333333222222223347899999999765 566777889
Q ss_pred cCCCEEEEEEeCCChhcHHHHHHHH-HHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 463 RRADGVMLLYDVTNERSFNSVKNWV-EAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~~~~~~-~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
+.||++|+|||++++.+..+ .|+ ..+.... .++|+|+|+||+|+..... .+ ......+ .....+++||
T Consensus 85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~-----~~-~~~~~~~--~~~~~~~~iS 153 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPED--ELVARALKPLV-GKVPILLVGNKLDAAKYPE-----EA-MKAYHEL--LPEAEPRMLS 153 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-TTSCEEEEEECGGGCSSHH-----HH-HHHHHHT--STTSEEEECC
T ss_pred hcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-CCCCEEEEEECcccCCchH-----HH-HHHHHHh--cCcCcEEEEe
Confidence 99999999999998766543 343 4444332 3589999999999965311 01 1122222 1124789999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcccccc
Q psy8073 542 SKSGDNILDALIALSRHVYVFIPCVYL 568 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~~~~~~~~ 568 (593)
|++|.|+++++..|...+.. .+.+|+
T Consensus 154 A~~g~gv~~l~~~l~~~l~~-~~~~y~ 179 (301)
T 1wf3_A 154 ALDERQVAELKADLLALMPE-GPFFYP 179 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCB-CCCSSC
T ss_pred CCCCCCHHHHHHHHHHhccc-CCCCCC
Confidence 99999999999999887754 333443
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=1.1e-21 Score=197.33 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=111.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh----------hhhHh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR----------SMTKN 460 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~----------~~~~~ 460 (593)
+.++|+|+|++|||||||+|+|++..+. ++..+|++...+...+...+..+.||||||+..+. .++..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~--v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEE--EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcc--cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 3589999999999999999999988643 33344444444443333333678999999987664 22333
Q ss_pred hc--cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEE
Q psy8073 461 YF--RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFM 538 (593)
Q Consensus 461 ~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 538 (593)
++ ..+|++|+|+|+++...... |...+... ++|+|+|+||+|+..... +. .....++..++++++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~------~~-~~~~~l~~~lg~~~i 146 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQN------IR-IEIDALSARLGCPVI 146 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTT------EE-ECHHHHHHHHTSCEE
T ss_pred HHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhh------HH-HHHHHHHHhcCCCEE
Confidence 43 79999999999998654433 33333333 589999999999854311 11 123567778899999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 539 ETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
+|||++|.|+++++.+|.+.+..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999876653
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=7.5e-21 Score=190.94 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=117.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh------hhHhhc--c
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS------MTKNYF--R 463 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~------~~~~~~--~ 463 (593)
.++|+|+|++|||||||+|+|++..+.....++.+.++....+.+++ ..+.||||||+..+.. ++..++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 58999999999999999999999876433334444555555566665 6799999999887754 566666 7
Q ss_pred CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCC
Q psy8073 464 RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~ 543 (593)
.+|++|+|+|+++.. ....|...+.... .+|+++|+||+|+..... +.. ....++..+++++++|||+
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~------~~~-~~~~l~~~lg~~~~~~Sa~ 148 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKG------AKI-DIKKMRKELGVPVIPTNAK 148 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHT------CCC-CHHHHHHHHSSCEEECBGG
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccc------cHH-HHHHHHHHcCCcEEEEEeC
Confidence 899999999998753 2223333343322 289999999999854311 111 1566788889999999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy8073 544 SGDNILDALIALSRHVYVF 562 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~~ 562 (593)
+|.|+.+++..|...+...
T Consensus 149 ~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GTBTHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999987653
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=7e-22 Score=191.37 Aligned_cols=150 Identities=17% Similarity=0.294 Sum_probs=108.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCcccc---CCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccC-
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLN---KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR- 464 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~---~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~- 464 (593)
....++|+|+|++|||||||+++|++..+.. .+.++.+.++ ..+.+.||||||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 3567899999999999999999999987543 2334433333 34679999999999998888888877
Q ss_pred ---CCEEEEEEeCC-ChhcHHHHHHHHHHHHHH----cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe
Q psy8073 465 ---ADGVMLLYDVT-NERSFNSVKNWVEAVEEV----TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI 536 (593)
Q Consensus 465 ---ad~vi~v~D~~-~~~s~~~~~~~~~~i~~~----~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~ 536 (593)
+|++|+|||++ ++.++..+..|+..+... ...++|+++|+||+|+................+..++...++.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999 888998888888777654 3457999999999999764221111112245566777777788
Q ss_pred EEEEcCCCCCC
Q psy8073 537 FMETSSKSGDN 547 (593)
Q Consensus 537 ~~e~Sa~~g~g 547 (593)
|+++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999999875
No 128
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=3.3e-22 Score=214.42 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=107.4
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh--------hh
Q psy8073 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR--------SM 457 (593)
Q Consensus 387 ~~~~~~~kI~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~--------~~ 457 (593)
...+.+++|+|+|+||||||||+|+|++..+. ....++.+.++....+.+++ +++.||||||+..+. ..
T Consensus 219 ~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~ 296 (462)
T 3geh_A 219 ELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVER 296 (462)
T ss_dssp HHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC------------------
T ss_pred hhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHH
Confidence 34567899999999999999999999987532 11122223555556667777 788999999975543 22
Q ss_pred hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 458 TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
+..++..||++|+|||++++.++.. ..|+..+. ..|+|+|+||+|+.......... .+. .+.++
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~~~~--------~~~--~~~~~ 360 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLITSLE--------YPE--NITQI 360 (462)
T ss_dssp --CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGSTTCC--------CCT--TCCCE
T ss_pred HhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhHHHH--------Hhc--cCCcE
Confidence 4557899999999999999877655 44555442 26999999999997642211000 011 34679
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 538 METSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
++|||++|.||++++.+|.+.+..
T Consensus 361 i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 361 VHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998865
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.83 E-value=6.5e-20 Score=191.46 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=120.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh---------hhhHhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR---------SMTKNY 461 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~---------~~~~~~ 461 (593)
..++|+|+|++|||||||+|+|++..+.....+..+.+.....+...+ ..+.+|||||...+. .....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 457999999999999999999998764221111212333334444444 789999999964321 122345
Q ss_pred ccCCCEEEEEEeCCChh--cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEE
Q psy8073 462 FRRADGVMLLYDVTNER--SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFME 539 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e 539 (593)
...+|++|+|+|++++. ++.....|+..+..... ++|+|+|+||+|+.... .+ .....++...++++++
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~------~~--~~~~~~~~~~~~~~~~ 314 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE------NI--KRLEKFVKEKGLNPIK 314 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH------HH--HHHHHHHHHTTCCCEE
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH------HH--HHHHHHHHhcCCCeEE
Confidence 56799999999999877 77888889888877654 68999999999997541 11 3344556667888999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhhccc
Q psy8073 540 TSSKSGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 540 ~Sa~~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
|||++|.||++++.+|.+.+....+.
T Consensus 315 iSA~~g~gi~~l~~~i~~~l~~~~~~ 340 (357)
T 2e87_A 315 ISALKGTGIDLVKEEIIKTLRPLAEK 340 (357)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988765444
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=1.4e-20 Score=201.81 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=117.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--eeeEEEEEEECCeeEEEEEEecCCc----------hhhhhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--VDFQMKTIRVDERNVALQLWDTAGQ----------ERFRSM 457 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~~~~~~~~~~~~~~~~~~l~DTaG~----------e~~~~~ 457 (593)
...++|+|+|+||||||||+|+|++..+. ..+...| .+.....+.+++ ..+.||||||+ +.|..+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHH
Confidence 35689999999999999999999988642 1222222 444445566676 56899999997 666554
Q ss_pred hH-hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHH-HHHHHHH----
Q psy8073 458 TK-NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDRE-VGEKLAQ---- 531 (593)
Q Consensus 458 ~~-~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~-~~~~l~~---- 531 (593)
+. .+++.||++|+|||++++.++++. .|...+.. .++|+|+|+||+|+.... .+... ....+..
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------~~~~~~~~~~~~~~l~~ 319 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKD------ESTMKEFEENIRDHFQF 319 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCC------TTHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcc------hHHHHHHHHHHHHhccc
Confidence 43 588999999999999999998875 47666653 458999999999997531 12211 2222222
Q ss_pred HhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhccc
Q psy8073 532 QYGAIFMETSSKSGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 532 ~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
..++++++|||++|.||.+++..+.+.+......
T Consensus 320 ~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~ 353 (436)
T 2hjg_A 320 LDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 353 (436)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred CCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcC
Confidence 3367899999999999999999999888765433
No 131
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.83 E-value=8.1e-21 Score=197.93 Aligned_cols=169 Identities=16% Similarity=0.128 Sum_probs=116.1
Q ss_pred CCCcceE-EEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc---------hhhhhh
Q psy8073 388 EPDRAFK-IVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ---------ERFRSM 457 (593)
Q Consensus 388 ~~~~~~k-I~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~---------e~~~~~ 457 (593)
..+.+++ |+|+|++|||||||+|+|++..+.....+..+.++....+.+++ ..+.+|||+|. +.|..
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~- 250 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFV- 250 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHH-
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHH-
Confidence 3445666 99999999999999999998865322222222456667788887 67899999995 33433
Q ss_pred hHhhccCCCEEEEEEeCCChh--cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh--
Q psy8073 458 TKNYFRRADGVMLLYDVTNER--SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY-- 533 (593)
Q Consensus 458 ~~~~~~~ad~vi~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~-- 533 (593)
+...+..||++++|+|++++. ++..+..|...+......++|+|+|+||+|+..... . .....+..++..+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~----~-~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDL----Y-KKLDLVEKLSKELYS 325 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCH----H-HHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchH----H-HHHHHHHHHHHHhcC
Confidence 334678999999999999887 566666777777776656789999999999865310 0 0012233344444
Q ss_pred -CCeEEEEcCCCCCCHHHHHHHHHHHHHhhcc
Q psy8073 534 -GAIFMETSSKSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 534 -~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
+..+++|||++|.|+++++.+|.+.+....+
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 2368999999999999999999998876443
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=1.4e-20 Score=201.86 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccce--eeEEEEEEECCeeEEEEEEecCCchh---------hhhhhHhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV--DFQMKTIRVDERNVALQLWDTAGQER---------FRSMTKNY 461 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~--~~~~~~~~~~~~~~~~~l~DTaG~e~---------~~~~~~~~ 461 (593)
++|+|+|.||||||||+|+|++..+ ..+..++|+ ++....+.+++ ..+.||||||++. +...+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHH
Confidence 5899999999999999999998863 233444454 45556666676 5789999999764 34567788
Q ss_pred ccCCCEEEEEEeCCChhcHHH--HHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHH-HHHHHHhCC-eE
Q psy8073 462 FRRADGVMLLYDVTNERSFNS--VKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVG-EKLAQQYGA-IF 537 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~-~~l~~~~~~-~~ 537 (593)
++.||++|+|||++++.+..+ +..|+. . .++|+|+|+||+|+... . .... ..+. ..+. .+
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--------~-~~~~~~~~~-~lg~~~~ 142 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--------F-EREVKPELY-SLGFGEP 142 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--------H-HHHTHHHHG-GGSSCSC
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--------c-HHHHHHHHH-hcCCCCE
Confidence 999999999999998776543 233332 2 24899999999998421 0 1111 2333 3455 68
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 538 METSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 538 ~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
++|||++|.|+.+++++|...+...
T Consensus 143 ~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 143 IPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEeccCCCCHHHHHHHHHHhcccc
Confidence 8999999999999999999988753
No 133
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.2e-20 Score=203.38 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=119.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccc--eeeEEEEEEECCeeEEEEEEecCC----------chhhhhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLG--VDFQMKTIRVDERNVALQLWDTAG----------QERFRSM 457 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g--~~~~~~~~~~~~~~~~~~l~DTaG----------~e~~~~~ 457 (593)
...++|+|+|.+|||||||+|+|++... ......+| .+.....+.+++ ..++|||||| +++|..+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence 4578999999999999999999997642 12222223 444445666676 5799999999 6888665
Q ss_pred hH-hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh---
Q psy8073 458 TK-NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY--- 533 (593)
Q Consensus 458 ~~-~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~--- 533 (593)
+. .+++.||++|+|+|++++.+..+ ..|...+.. .++|+|+|+||+|+... +.+..+.....+...
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~ 339 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDK------DESTMKEFEENIRDHFQF 339 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCC------CSSHHHHHHHHHHHHCGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCC------chHHHHHHHHHHHHhccc
Confidence 54 47899999999999998766443 345555544 45899999999999753 224444444444443
Q ss_pred --CCeEEEEcCCCCCCHHHHHHHHHHHHHhhccc
Q psy8073 534 --GAIFMETSSKSGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 534 --~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
++++++|||++|.||+++|.+|.+.+......
T Consensus 340 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 340 LDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred CCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 57899999999999999999999988665544
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=1.1e-20 Score=202.61 Aligned_cols=153 Identities=20% Similarity=0.210 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCch--------hhhhhhHhhccC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE--------RFRSMTKNYFRR 464 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e--------~~~~~~~~~~~~ 464 (593)
++|+|+|.||||||||+|+|++..+ ..+..++|++++.....+...+..+.||||||++ .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 6999999999999999999998864 4567788888777777776666789999999985 667778889999
Q ss_pred CCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEEcCC
Q psy8073 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMETSSK 543 (593)
Q Consensus 465 ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~Sa~ 543 (593)
||++|+|||++++.++.+. .|...+ ...++|+++|+||+|+..... ... .+. ..+. .+++|||+
T Consensus 83 ad~il~vvD~~~~~~~~d~-~~~~~l---~~~~~pvilv~NK~D~~~~~~--~~~--------~~~-~lg~~~~~~iSA~ 147 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADE-EVAKIL---YRTKKPVVLAVNKLDNTEMRA--NIY--------DFY-SLGFGEPYPISGT 147 (436)
T ss_dssp CSEEEEEEETTTCSCHHHH-HHHHHH---TTCCSCEEEEEECCCC-------CCC--------SSG-GGSSCCCEECBTT
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHH---HHcCCCEEEEEECccCccchh--hHH--------HHH-HcCCCCeEEEeCc
Confidence 9999999999998776542 222222 235689999999999864311 011 111 2344 57899999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8073 544 SGDNILDALIALSRHVYV 561 (593)
Q Consensus 544 ~g~gi~~l~~~L~~~l~~ 561 (593)
+|.|+.+++++|...+.+
T Consensus 148 ~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TTBTHHHHHHHHHHTGGG
T ss_pred CCCChHHHHHHHHHhcCc
Confidence 999999999999988764
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.81 E-value=4e-20 Score=190.76 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc--cCCCCccceeeEEEEEEECCeeEEEEEEecCCchh----hhhhhHhhc---c
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL--NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER----FRSMTKNYF---R 463 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~----~~~~~~~~~---~ 463 (593)
.+|+|+|.||||||||+|+|++..+. ..+.+|. +.....+.+++ ...+.||||||+.. +..+...++ .
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl--~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTL--VPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCC--CCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCcccc--CceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 47999999999999999999987532 1222332 22233444543 25799999999643 333444454 4
Q ss_pred CCCEEEEEEeCCC---hhcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC--Ce
Q psy8073 464 RADGVMLLYDVTN---ERSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG--AI 536 (593)
Q Consensus 464 ~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~--~~ 536 (593)
.+|++|+|||+++ +.++..+..|+..+..+.. ..+|+|+|+||+|+... .+....++..++ +.
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----------~e~~~~l~~~l~~~~~ 305 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----------AENLEAFKEKLTDDYP 305 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----------HHHHHHHHHHCCSCCC
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----------HHHHHHHHHHhhcCCC
Confidence 5999999999998 7888999899999988753 46899999999999653 134456666666 57
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 537 FMETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 537 ~~e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
+++|||+++.||++++.+|.+.+....
T Consensus 306 v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 306 VFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp BCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 899999999999999999999987533
No 136
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.81 E-value=4e-20 Score=182.95 Aligned_cols=178 Identities=12% Similarity=0.104 Sum_probs=115.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCcccee--eEEEEEEECCeeEEEEEEecCCc--------hhhhhhhH
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVD--FQMKTIRVDERNVALQLWDTAGQ--------ERFRSMTK 459 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~--~~~~~~~~~~~~~~~~l~DTaG~--------e~~~~~~~ 459 (593)
...++|+|+|.+|||||||+|+|++..+.....++.|++ +....+..++ ..+.||||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 457999999999999999999999886543333332333 3344445555 78999999995 44433233
Q ss_pred hh----ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcC---CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH
Q psy8073 460 NY----FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE---NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ 532 (593)
Q Consensus 460 ~~----~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~ 532 (593)
.+ ++.+|++|+|+|+++ .+... ..++..+..... .+.|+|||+||+|+...................+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGR-FTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTB-CCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCC-CCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 33 389999999999985 22222 223344444322 2579999999999965311110011111345677778
Q ss_pred hCCeEEEEcCCC-----CCCHHHHHHHHHHHHHhhccccccCCC
Q psy8073 533 YGAIFMETSSKS-----GDNILDALIALSRHVYVFIPCVYLKDL 571 (593)
Q Consensus 533 ~~~~~~e~Sa~~-----g~gi~~l~~~L~~~l~~~~~~~~~~~~ 571 (593)
++..++.++++. +.||.+|+..|.+.+.+....+|+.++
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~ 218 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEV 218 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHH
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 888777777665 579999999999999987887777654
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.81 E-value=1.4e-20 Score=199.15 Aligned_cols=159 Identities=22% Similarity=0.219 Sum_probs=115.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCcccc-CCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhh-------hHh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLN-KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSM-------TKN 460 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~-------~~~ 460 (593)
....++|+|+|++|||||||+|+|++..+.. ...+..+++...+.+.+.+. ..+.||||||++.|..+ +..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 3456899999999999999999999886521 11122224555566666653 37999999998876443 466
Q ss_pred hccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEE
Q psy8073 461 YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMET 540 (593)
Q Consensus 461 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~ 540 (593)
++..+|++|+|||++.. .....|+..+... ++|+|+|+||+|+..... .+....++..+++++++|
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~--------~~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKA--------EELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCC--------THHHHHSSCCTTCCCCCC
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccH--------HHHHHHHHHHcCCCEEEE
Confidence 88999999999999332 2345577766654 589999999999976411 145566666778899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhh
Q psy8073 541 SSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
||++|.|+++++.+|.+.+...
T Consensus 176 SAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999988654
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=1.6e-19 Score=183.91 Aligned_cols=166 Identities=16% Similarity=0.118 Sum_probs=113.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCch---------hhhhhhHhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE---------RFRSMTKNY 461 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e---------~~~~~~~~~ 461 (593)
+..+|+|+|+||||||||+|+|++..+. ..+..++++.......+...+..+.||||||+. .+...+..+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 4568999999999999999999998643 223333333322222232234789999999987 234445678
Q ss_pred ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC-eEEEE
Q psy8073 462 FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA-IFMET 540 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~e~ 540 (593)
++.+|++++|+|+++ .+... .|+- ......+.|+|+|+||+|+... +.........++..++. .++++
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~--~~i~--~~l~~~~~P~ilvlNK~D~~~~------~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDD--EMVL--NKLREGKAPVILAVNKVDNVQE------KADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHH--HHHH--HHHHSSSSCEEEEEESTTTCCC------HHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HhcCCEEEEEEeCCC-CCHHH--HHHH--HHHHhcCCCEEEEEECcccCcc------HHHHHHHHHHHHHhcCcCceEEE
Confidence 899999999999987 44332 2332 2223346899999999999652 11223445556555665 68999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhccccccC
Q psy8073 541 SSKSGDNILDALIALSRHVYVFIPCVYLK 569 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l~~~~~~~~~~ 569 (593)
||++|.|++++++.|...+.. .+.+|+.
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~-~~~~~~~ 182 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPE-ATHHFPE 182 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCB-CCCSSCT
T ss_pred ECCCCCCHHHHHHHHHHhCCc-CCCCCCc
Confidence 999999999999999887764 3444433
No 139
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=174.61 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=114.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCC--ccceeeEEEEEEECCeeEEEEEEecCCc-----------hhhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGS--TLGVDFQMKTIRVDERNVALQLWDTAGQ-----------ERFR 455 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~g~~~~~~~~~~~~~~~~~~l~DTaG~-----------e~~~ 455 (593)
....++|+|+|++|||||||+|+|++..+.....+ +.+.++....+.+++ ..+.||||||. +.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 35679999999999999999999999876444333 344555556666666 67899999993 3444
Q ss_pred hhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 456 SMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 456 ~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
.....+++.+|++|+|+|+++.... ...|+..+..... ...|+|||+||+|+.........-......+..+...+
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 5556667889999999999764432 1233333322111 12599999999998654211100001123567788888
Q ss_pred CCeEEEEcCCCC-----CCHHHHHHHHHHHHHhhccccccCCCC
Q psy8073 534 GAIFMETSSKSG-----DNILDALIALSRHVYVFIPCVYLKDLP 572 (593)
Q Consensus 534 ~~~~~e~Sa~~g-----~gi~~l~~~L~~~l~~~~~~~~~~~~~ 572 (593)
+..++.+++..+ .|+.+++..+...+.+....++...++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~ 225 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMY 225 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC-----
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 888888877754 689999999999887755555555543
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.79 E-value=4.4e-19 Score=189.89 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=108.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCc--cccC---------------------------CCCccceeeEEEEEEECCe
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEV--FLNK---------------------------LGSTLGVDFQMKTIRVDER 439 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~--~~~~---------------------------~~~t~g~~~~~~~~~~~~~ 439 (593)
....++|+|+|++|+|||||+++|+... +... .....|++.......+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3567899999999999999999995431 0000 0011344555545445445
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhc---HHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCcccc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERS---FNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQA 515 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s---~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~ 515 (593)
+..+.||||||+++|...+..++..||++|+|+|++++.. |....++...+......++| +|+|+||+|+......
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 5789999999999998888899999999999999998643 11111222222223334567 9999999999532100
Q ss_pred ccccccCHHHHHHHHHHhC------CeEEEEcCCCCCCHHHHHH
Q psy8073 516 KGVKCIDREVGEKLAQQYG------AIFMETSSKSGDNILDALI 553 (593)
Q Consensus 516 ~~~~~v~~~~~~~l~~~~~------~~~~e~Sa~~g~gi~~l~~ 553 (593)
.............+...++ ++++++||++|.|+.++..
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 0001112233344444444 4699999999999999765
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.79 E-value=2.4e-19 Score=178.75 Aligned_cols=175 Identities=16% Similarity=0.133 Sum_probs=111.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc-cccCCCCc-cceeeEEEEEEECCeeEEEEEEecCCchhhh-----------h
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV-FLNKLGST-LGVDFQMKTIRVDERNVALQLWDTAGQERFR-----------S 456 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~-~~~~~~~t-~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~-----------~ 456 (593)
...++|+|+|++|||||||+|+|++.. +.....++ .+.++....+..++ ..+.||||||+..+. .
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 456899999999999999999999875 44333333 34555555666666 679999999976542 2
Q ss_pred hhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCC--CCcEEEEEe-CCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 457 MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN--SIPIVICAN-KVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 457 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piivV~N-K~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
....+++.+|++|+|||+++.... ...++..+...... ..|+|+|+| |+|+................+..+...+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHh
Confidence 233477899999999999862211 11222333333221 246666666 9999642100000000013344455555
Q ss_pred CCe---E--EEEcCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy8073 534 GAI---F--METSSKSGDNILDALIALSRHVYVFIPCVYL 568 (593)
Q Consensus 534 ~~~---~--~e~Sa~~g~gi~~l~~~L~~~l~~~~~~~~~ 568 (593)
+.. + ++|||++|.|++++|.+|...+......+++
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~ 215 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYT 215 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 542 2 7899999999999999999998875434444
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.78 E-value=5.5e-18 Score=179.70 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=115.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccC---CCCccceeeEE---EEE---------EE---CCeeEEEEEEecCC
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK---LGSTLGVDFQM---KTI---------RV---DERNVALQLWDTAG 450 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~---~~~t~g~~~~~---~~~---------~~---~~~~~~~~l~DTaG 450 (593)
....++|+++|++|+|||||+|+|++...... ...+.+..... ..+ .+ ......+.||||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 45679999999999999999999987532211 11110000000 000 00 11236899999999
Q ss_pred chhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHH
Q psy8073 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA 530 (593)
Q Consensus 451 ~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~ 530 (593)
++.|...+..++..+|++|+|+|++++.++.....|+..+..... .|+|+|+||+|+.+.... . ...+....+.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~Dl~~~~~~---~-~~~~~i~~~l 158 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKVDVVSKEEA---L-SQYRQIKQFT 158 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECGGGSCHHHH---H-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECccccchHHH---H-HHHHHHHHHH
Confidence 999998899999999999999999998767777777776665543 589999999999754110 0 0111222222
Q ss_pred HHh---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 531 QQY---GAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 531 ~~~---~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
..+ +++++++||++|.||++++.+|...+.
T Consensus 159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 222 567999999999999999999988664
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=4.1e-19 Score=190.55 Aligned_cols=166 Identities=21% Similarity=0.186 Sum_probs=109.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccce--eeEEEEEEECCeeEEEEEEecCCchhhhhh-----------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV--DFQMKTIRVDERNVALQLWDTAGQERFRSM----------- 457 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~--~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~----------- 457 (593)
..++|+|+|++|||||||+|+|++..+ ..+++.+|+ +.....+.+++ ..+.+|||||+.++...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHHH
Confidence 468999999999999999999998753 222333333 44445667777 46899999997543221
Q ss_pred -hHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe
Q psy8073 458 -TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI 536 (593)
Q Consensus 458 -~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~ 536 (593)
...+++.+|++++|+|++++.++.+.. +...+. ..++|+++|+||+|+...... ....+.......++...+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~---~~~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQR-MAGLME---RRGRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHH---HTTCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECccCCCchhh-HHHHHHHHHHHHhccCCCCc
Confidence 235678899999999999887766532 333332 235899999999998653110 00001111112222233578
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhhcc
Q psy8073 537 FMETSSKSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 537 ~~e~Sa~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
+++|||++|.||++++..|.+.+.....
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999987776543
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=2.9e-19 Score=192.65 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=105.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCC--------chhhhhhhHhh
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG--------QERFRSMTKNY 461 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG--------~e~~~~~~~~~ 461 (593)
...++|+|+|.+|||||||+|+|++..+ ..+..++|+++......+...+..+.|||||| ++.+...+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3457999999999999999999999874 35677888888888888877778899999999 77788888999
Q ss_pred ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEc
Q psy8073 462 FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541 (593)
Q Consensus 462 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~S 541 (593)
++.||++|+|+|+.++.+..+ .|+..+ ....++|+|+|+||+|+...... .. ..+...++ .++++|
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~--l~~~~~pvilV~NK~D~~~~~~~--~~-------e~~~lg~~-~~~~iS 165 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAAD--EEVAKI--LYRTKKPVVLAVNKLDNTEMRAN--IY-------DFYSLGFG-EPYPIS 165 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHH--HHHHHH--HTTCCSCEEEEEECC-----------C-------CSGGGSSS-SEEECC
T ss_pred HhhCCEEEEEEeCCCCCChHH--HHHHHH--HHHcCCCEEEEEECccchhhhhh--HH-------HHHHcCCC-ceEEee
Confidence 999999999999987655443 222222 23356899999999998643110 00 00111122 356899
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy8073 542 SKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 542 a~~g~gi~~l~~~L~~~l~~ 561 (593)
|++|.|+.+++..+...+..
T Consensus 166 A~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGGG
T ss_pred cccccchHHHHHHHHhhccc
Confidence 99999999999999876653
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.77 E-value=2.1e-18 Score=186.62 Aligned_cols=161 Identities=11% Similarity=0.147 Sum_probs=111.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc----c---ccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV----F---LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYF 462 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~----~---~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~ 462 (593)
.+.++|+++|++|+|||||+++|++.. + .......++.+.....+.+++ ..+.||||||+++|......++
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999999998765 1 111111111222223344455 7899999999999988888999
Q ss_pred cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh----CCeEE
Q psy8073 463 RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY----GAIFM 538 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~----~~~~~ 538 (593)
..+|++|+|||++++...+... ++..+.. .++|+|+|+||+|+.+... ..........+.... +++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~ip~IvviNK~Dl~~~~~----~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGE-HMLILDH---FNIPIIVVITKSDNAGTEE----IKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCBCEEEECTTSSCHHH----HHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred hhCCEEEEEEecCCCccHHHHH-HHHHHHH---cCCCEEEEEECCCcccchh----HHHHHHHHHHHHhhhcccccceEE
Confidence 9999999999999844333322 2223332 3589999999999975311 111233444455444 56899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHH
Q psy8073 539 ETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 539 e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
++||++|.||++++++|...+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999999876
No 146
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.77 E-value=2.3e-18 Score=189.55 Aligned_cols=158 Identities=21% Similarity=0.295 Sum_probs=113.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcC--cccc-----CC------CCccceeeEEEEEEE-----CCeeEEEEEEecCCch
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKE--VFLN-----KL------GSTLGVDFQMKTIRV-----DERNVALQLWDTAGQE 452 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~--~~~~-----~~------~~t~g~~~~~~~~~~-----~~~~~~~~l~DTaG~e 452 (593)
+..+|+|+|++|+|||||+++|+.. .+.. .+ ..+.|.++....+.+ ++..+.+.||||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4579999999999999999999862 1110 01 112344554433333 5557899999999999
Q ss_pred hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHH
Q psy8073 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQ 532 (593)
Q Consensus 453 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~ 532 (593)
+|...+..+++.+|++|+|||++++.+++....|...+. .++|+|+|+||+|+.... .......+...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--------~~~v~~ei~~~ 150 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--------PERVAEEIEDI 150 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--------HHHHHHHHHHH
Confidence 998888999999999999999999988888887876553 358999999999997531 23344556666
Q ss_pred hCCe---EEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 533 YGAI---FMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 533 ~~~~---~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
++.. ++++||++|.||++++++|.+.+.
T Consensus 151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred hCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 6663 899999999999999999988765
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.76 E-value=5.9e-19 Score=191.47 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=101.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--ccc---------------------------CCCCccceeeEEEEEEECCee
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--FLN---------------------------KLGSTLGVDFQMKTIRVDERN 440 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--~~~---------------------------~~~~t~g~~~~~~~~~~~~~~ 440 (593)
...+||+|+|++|+|||||+++|++.. +.. ......|+++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 456999999999999999999997541 110 001123555555555555566
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHH------HHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNS------VKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~------~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
+.+.||||||+++|...+..++..||++|+|||++++.++.. ....+..+... ...|+|||+||+|+.....
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 889999999999999999999999999999999998754322 11122222221 1246999999999975210
Q ss_pred cccccccCHHHHHHHHHHh-----CCeEEEEcCCCCCCHHH
Q psy8073 515 AKGVKCIDREVGEKLAQQY-----GAIFMETSSKSGDNILD 550 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~~-----~~~~~e~Sa~~g~gi~~ 550 (593)
.... ........+...+ +++|++|||++|.||.+
T Consensus 189 -~~~~-~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 -QRFE-EIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp -HHHH-HHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred -HHHH-HHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 0000 0112233333333 35799999999999975
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.76 E-value=1.8e-20 Score=203.26 Aligned_cols=160 Identities=16% Similarity=0.249 Sum_probs=116.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVML 470 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~ 470 (593)
+.++|+|+|++|+|||||+++|++..+.....++++.++....+.+++ +..+.||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 568999999999999999999998765554444444444433443322 2478999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHH---HHHh--CCeEEEEcCCCC
Q psy8073 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKL---AQQY--GAIFMETSSKSG 545 (593)
Q Consensus 471 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l---~~~~--~~~~~e~Sa~~g 545 (593)
|||++++...+.... +......++|+|+|+||+|+..... ..+.... ..+ +..+ .+++++|||++|
T Consensus 82 VVDa~dg~~~qt~e~----l~~~~~~~vPiIVViNKiDl~~~~~----~~v~~~l-~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 82 VVAADDGVMKQTVES----IQHAKDAHVPIVLAINKCDKAEADP----EKVKKEL-LAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp ECBSSSCCCHHHHHH----HHHHHTTTCCEEECCBSGGGTTTSC----CSSSSHH-HHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEECCCCccHHHHHH----HHHHHHcCCcEEEEEecccccccch----HHHHHHH-HhhhhhHHhcCCCceEEEEECCCC
Confidence 999999777655443 3333445689999999999965321 1111111 111 1112 247999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy8073 546 DNILDALIALSRHVY 560 (593)
Q Consensus 546 ~gi~~l~~~L~~~l~ 560 (593)
.||++++.+|...+.
T Consensus 153 ~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 153 ENMMALAEATIALAE 167 (537)
T ss_dssp CSSHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHhhh
Confidence 999999999988765
No 149
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=1.4e-17 Score=176.83 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=106.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc---cccCC--CCccceeeEEEEEEE-------------C--C----eeEEEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV---FLNKL--GSTLGVDFQMKTIRV-------------D--E----RNVALQL 445 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~---~~~~~--~~t~g~~~~~~~~~~-------------~--~----~~~~~~l 445 (593)
...++|+++|++++|||||+++|++.. +.... +.|+...+....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 356899999999999999999998542 22222 225555554444422 1 1 1378999
Q ss_pred EecCCchhhhhhhHhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHH
Q psy8073 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDRE 524 (593)
Q Consensus 446 ~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~ 524 (593)
|||||+++|.......+..+|++|+|||++++. ..+.. .++..+.... ..|+|+|+||+|+..... .....+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~-e~l~~~~~l~--~~~iivv~NK~Dl~~~~~----~~~~~~ 158 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTK-EHLMALEILG--IDKIIIVQNKIDLVDEKQ----AEENYE 158 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHH-HHHHHHHHTT--CCCEEEEEECTTSSCTTT----TTTHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhH-HHHHHHHHcC--CCeEEEEEEccCCCCHHH----HHHHHH
Confidence 999999999877788888999999999999653 22222 2222233222 258999999999975411 112234
Q ss_pred HHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 525 VGEKLAQQ---YGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 525 ~~~~l~~~---~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
.+..+... .++++++|||++|.||++++++|...+.
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 45555544 2568999999999999999999987664
No 150
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.76 E-value=3.2e-18 Score=188.02 Aligned_cols=159 Identities=23% Similarity=0.300 Sum_probs=114.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--cccc-----CCC------CccceeeEEE--EEEE---CCeeEEEEEEecCCc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--VFLN-----KLG------STLGVDFQMK--TIRV---DERNVALQLWDTAGQ 451 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~-----~~~------~t~g~~~~~~--~~~~---~~~~~~~~l~DTaG~ 451 (593)
.+..+|+|+|++|+|||||+++|+.. .+.. .+. ...|.++... .+.+ ++..+.+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34579999999999999999999753 1111 000 0122232211 1211 455689999999999
Q ss_pred hhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHH
Q psy8073 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQ 531 (593)
Q Consensus 452 e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~ 531 (593)
++|......+++.+|++|+|||++++.+++....|..... .++|+|+|+||+|+.... .......+..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--------~~~v~~el~~ 151 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--------VDRVKKQIEE 151 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--------HHHHHHHHHH
Confidence 9998888889999999999999999998888888876543 358999999999997531 2233455666
Q ss_pred HhCC---eEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 532 QYGA---IFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 532 ~~~~---~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
.++. .++++||++|.||++++++|.+.+.
T Consensus 152 ~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 152 VLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp TSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 6665 3899999999999999999988775
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.76 E-value=1.6e-18 Score=188.78 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=84.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcC------------------ccccCC--CCccceeeEEEEEEECCeeEEEEEEecCC
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKE------------------VFLNKL--GSTLGVDFQMKTIRVDERNVALQLWDTAG 450 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~------------------~~~~~~--~~t~g~~~~~~~~~~~~~~~~~~l~DTaG 450 (593)
+..+|+|+|++|||||||+|+|+.. .+.... ....|+++......+...++.+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4579999999999999999999621 110000 00122222222233333348899999999
Q ss_pred chhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 451 ~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
+++|...+..+++.+|++|+|+|++++.+......|.. + ...++|+|+|+||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~---~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-C---RLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-H---HTTTCCEEEEEECTTSCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-H---HHcCCCEEEEEeCCCCcc
Confidence 99999899999999999999999999888877665542 2 234689999999999964
No 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.2e-18 Score=165.10 Aligned_cols=114 Identities=19% Similarity=0.377 Sum_probs=87.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcccc---CCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccC--
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLN---KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRR-- 464 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~---~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~-- 464 (593)
.+.++|+|+|++|||||||+|+|++..+.. ...++.+.++ ..+.+.||||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 567899999999999999999999887543 1222222222 34678999999999887777777765
Q ss_pred --CCEEEEEEeCC-ChhcHHHHHHHHHHHHHH----cCCCCcEEEEEeCCCCCCc
Q psy8073 465 --ADGVMLLYDVT-NERSFNSVKNWVEAVEEV----TENSIPIVICANKVDLRAD 512 (593)
Q Consensus 465 --ad~vi~v~D~~-~~~s~~~~~~~~~~i~~~----~~~~~piivV~NK~Dl~~~ 512 (593)
+|++|+|||++ ++.++..+..|+..+... ...++|+++|+||+|+...
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 889998888887776554 2356999999999999754
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=1.7e-18 Score=174.01 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=93.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCcc-ccCC-------CCccceeeEEEEEEECCeeEEEEEEecCCch-------hhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVF-LNKL-------GSTLGVDFQMKTIRVDERNVALQLWDTAGQE-------RFR 455 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~-~~~~-------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e-------~~~ 455 (593)
..++|+|+|.+|||||||+|+|++... ...+ .+|++.++....+..++..+.+.||||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 358999999999999999999877643 3333 5666666666666566666799999999962 233
Q ss_pred hhh-------Hhhcc-------------CCCEEEEEEeCCC-hhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 456 SMT-------KNYFR-------------RADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 456 ~~~-------~~~~~-------------~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
.+. ..|+. .+|++|++++.+. +....+ ..|+..+. . .+|+|+|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~~~l~~l~---~-~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLH---E-KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-HHHHHHHT---T-TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-HHHHHHHh---c-cCCEEEEEeccCCCCHHH
Confidence 332 33333 3789999997765 222222 22443343 2 689999999999864311
Q ss_pred cccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
. ......+.......++.++.+||++|.|+.+++.+|...+
T Consensus 162 ~----~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 C----QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp H----HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred H----HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 0 0111233344456688899999999999999999887654
No 154
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.3e-18 Score=192.84 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=105.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCC-------------C----------------CccceeeEEEEEEECCe
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKL-------------G----------------STLGVDFQMKTIRVDER 439 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~-------------~----------------~t~g~~~~~~~~~~~~~ 439 (593)
....++|+|+|++|||||||+|+|++....-.. + ...|+++......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356799999999999999999999866311000 0 01344444444444445
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh---cHHHHHHHHHHHHHHcCCCC-cEEEEEeCCCCCCcccc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER---SFNSVKNWVEAVEEVTENSI-PIVICANKVDLRADAQA 515 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~~~~~~~~~i~~~~~~~~-piivV~NK~Dl~~~~~~ 515 (593)
++.+.||||||+++|...+..+++.||++|+|||++++. ++.....+...+......++ |+|||+||+|+.....
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~- 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ- 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH-
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH-
Confidence 578999999999999988999999999999999998752 11011122223333333334 5999999999975210
Q ss_pred ccccccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHHHH
Q psy8073 516 KGVKCIDREVGEKLAQQYG-----AIFMETSSKSGDNILDA 551 (593)
Q Consensus 516 ~~~~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~~l 551 (593)
.... ........+...++ +++++|||++|.||.++
T Consensus 323 ~~~~-ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFE-EIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHH-HHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHH-HHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 0000 11223333444443 58999999999999876
No 155
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.73 E-value=7.6e-18 Score=161.78 Aligned_cols=160 Identities=16% Similarity=0.254 Sum_probs=104.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCch----------hhhhhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE----------RFRSMT 458 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e----------~~~~~~ 458 (593)
...+.+|+|+|++|||||||+|+|++..+...+.++.|+++....+.+++ .+.+|||||+. .+....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 45678999999999999999999998876666678888877665555544 47899999973 233333
Q ss_pred Hhhc---cCCCEEEEEEeCCChhcHHH--HHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 459 KNYF---RRADGVMLLYDVTNERSFNS--VKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 459 ~~~~---~~ad~vi~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
..++ ..++++++|+|++++.++.. +..|+. ..++|+++|+||+|+..... +......+..++...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~nK~D~~s~~~----~~~~~~~~~~~~~~~ 169 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------DSNIAVLVLLTKADKLASGA----RKAQLNMVREAVLAF 169 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------HTTCCEEEEEECGGGSCHHH----HHHHHHHHHHHHGGG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH------HcCCCeEEEEecccCCCchh----HHHHHHHHHHHHHhc
Confidence 3444 57899999999998766543 222332 23589999999999865311 111123344444444
Q ss_pred C--CeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 534 G--AIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 534 ~--~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
+ +.+++|||+++.|+++++..|.+.+.+
T Consensus 170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3 468899999999999999999887643
No 156
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.73 E-value=2.9e-17 Score=174.59 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=111.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc---cccC--CCCccceeeEEEEEEE-------------C--Ce----eEEEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV---FLNK--LGSTLGVDFQMKTIRV-------------D--ER----NVALQL 445 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~---~~~~--~~~t~g~~~~~~~~~~-------------~--~~----~~~~~l 445 (593)
...++|+++|++|+|||||+++|++.. +... .+.|+...+....+.. + +. ...+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 456899999999999999999998542 2222 2225544454433322 1 11 268999
Q ss_pred EecCCchhhhhhhHhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHH
Q psy8073 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDRE 524 (593)
Q Consensus 446 ~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~ 524 (593)
|||||++.|.......+..+|++|+|||++++. ..+... ++..+..... .|+|+|+||+|+..... .....+
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~~~--~~iivviNK~Dl~~~~~----~~~~~~ 160 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQIIGQ--KNIIIAQNKIELVDKEK----ALENYR 160 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHHTC--CCEEEEEECGGGSCHHH----HHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHcCC--CcEEEEEECccCCCHHH----HHHHHH
Confidence 999999999877778888999999999999653 222222 2223333322 58999999999976411 001122
Q ss_pred HHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 525 VGEKLAQQ---YGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 525 ~~~~l~~~---~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
.+..+... .+++++++||++|.||++++++|...+.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 33444433 3568999999999999999999987664
No 157
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.73 E-value=1.7e-17 Score=171.65 Aligned_cols=131 Identities=11% Similarity=0.107 Sum_probs=101.4
Q ss_pred EEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCC----------hhcHHHHHHHHHHHHHHc-CCCCc
Q psy8073 431 MKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTN----------ERSFNSVKNWVEAVEEVT-ENSIP 499 (593)
Q Consensus 431 ~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~----------~~s~~~~~~~~~~i~~~~-~~~~p 499 (593)
...+.+++ +.++||||||+++|+.++..||++++++|+|||+++ ..++.....|+..+.... ..++|
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 34455554 889999999999999999999999999999999999 456888778887776532 24699
Q ss_pred EEEEEeCCCCCCcccc---------ccccccCHHHHHHHHH-----------HhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 500 IVICANKVDLRADAQA---------KGVKCIDREVGEKLAQ-----------QYGAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 500 iivV~NK~Dl~~~~~~---------~~~~~v~~~~~~~l~~-----------~~~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
+|||+||+|+...... .....+..+.+..++. ..++.+++|||++|.||.++|.++.+.+
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 9999999998532100 0001256677777775 2456789999999999999999999988
Q ss_pred Hhhc
Q psy8073 560 YVFI 563 (593)
Q Consensus 560 ~~~~ 563 (593)
....
T Consensus 343 ~~~~ 346 (353)
T 1cip_A 343 IKNN 346 (353)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7543
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.73 E-value=7.9e-18 Score=180.18 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=106.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc---cccC---------CCCc-------------------cceeeEEEEEEECC
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV---FLNK---------LGST-------------------LGVDFQMKTIRVDE 438 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~---~~~~---------~~~t-------------------~g~~~~~~~~~~~~ 438 (593)
...++|+++|++|+|||||+++|++.. +... ...| .|.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999998653 1110 0011 12222222223333
Q ss_pred eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccc
Q psy8073 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGV 518 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~ 518 (593)
....+.||||||+++|......++..+|++|+|||++++...+. ..|+..+.... ..|+|+|+||+|+..... . .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~-~-~ 176 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLLG--IKHIVVAINKMDLNGFDE-R-V 176 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHTT--CCEEEEEEECTTTTTSCH-H-H
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHcC--CCeEEEEEEcCcCCcccH-H-H
Confidence 45789999999999998888888999999999999998765443 34544444332 136999999999975210 0 0
Q ss_pred cccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q psy8073 519 KCIDREVGEKLAQQYG-----AIFMETSSKSGDNILDAL 552 (593)
Q Consensus 519 ~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~~l~ 552 (593)
..........++..++ +++++|||++|.||.+++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 0012344556666777 679999999999998853
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.73 E-value=5.4e-18 Score=179.39 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=114.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCc-------cccC-------CCCccceeeEEEEEEECCeeEEEEEEecCCchhhhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEV-------FLNK-------LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRS 456 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~-------~~~~-------~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~ 456 (593)
+.++|+++|++|+|||||+++|++.. +... .....|.+.......+......+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 45899999999999999999998741 1100 001234454444445555557899999999999988
Q ss_pred hhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHhC-
Q psy8073 457 MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG- 534 (593)
Q Consensus 457 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~- 534 (593)
.+..++..||++|+|||++++...+....| ..+.. .++| +|+|+||+|+..... .......+...+...++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~---~~~~~~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSE---MVELVELEIRELLTEFGY 154 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHH---HHHHHHHHHHHHHHHTTS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHH---HHHHHHHHHHHHHHHcCC
Confidence 888899999999999999987665554444 33332 3578 789999999974210 00112334555666665
Q ss_pred ----CeEEEEcCCCCCC----------HHHHHHHHHHHHH
Q psy8073 535 ----AIFMETSSKSGDN----------ILDALIALSRHVY 560 (593)
Q Consensus 535 ----~~~~e~Sa~~g~g----------i~~l~~~L~~~l~ 560 (593)
++++++||++|.| +.+++++|...+.
T Consensus 155 ~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 8888888877654
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.73 E-value=2.7e-18 Score=182.26 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=107.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC--------ccccC--C-----CCccceeeEEEEEEECCeeEEEEEEecCCchh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE--------VFLNK--L-----GSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~--------~~~~~--~-----~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~ 453 (593)
....++|+++|++|+|||||+++|++. .+... . ..+.|.++......++.....+.||||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356799999999999999999999873 11110 0 01345555555555555557899999999999
Q ss_pred hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHH
Q psy8073 454 FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQ 532 (593)
Q Consensus 454 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~ 532 (593)
|...+..++..+|++|+|||++++...+. ..|+..+... ++| +|+|+||+|+..... ...........+...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~---~ip~iivviNK~Dl~~~~~---~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPE---LLDLVEMEVRDLLNQ 160 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEECccccCcHH---HHHHHHHHHHHHHHH
Confidence 98888899999999999999998765544 4555555432 478 899999999974210 001122345556666
Q ss_pred hC-----CeEEEEcCCCCCC
Q psy8073 533 YG-----AIFMETSSKSGDN 547 (593)
Q Consensus 533 ~~-----~~~~e~Sa~~g~g 547 (593)
++ ++++++||++|.|
T Consensus 161 ~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 161 YEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp TTSCTTTSCEEECCHHHHHH
T ss_pred hcccccCCCEEEccHHHhhh
Confidence 55 5799999999987
No 161
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.5e-18 Score=180.93 Aligned_cols=164 Identities=17% Similarity=0.279 Sum_probs=92.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCc-cccCC--------CCccceeeEEEEEEECCeeEEEEEEecCCc-------hhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEV-FLNKL--------GSTLGVDFQMKTIRVDERNVALQLWDTAGQ-------ERF 454 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~-~~~~~--------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~-------e~~ 454 (593)
..++|+|+|++|||||||+|+|++.. +...+ .+|++.++....+..++..+.+.+|||||+ +.|
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 35899999999999999999987653 32222 245444444444445565678999999998 667
Q ss_pred hhhhH-------hhccCCCEE-----------EEEEeCCC-hhcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 455 RSMTK-------NYFRRADGV-----------MLLYDVTN-ERSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 455 ~~~~~-------~~~~~ad~v-----------i~v~D~~~-~~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
..+.. .|++.++++ ++||++++ ..++..+. .|+..+ ..++|+|+|+||+|+...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~-- 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL-- 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH--
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH--
Confidence 66665 566544432 35555554 34444443 344333 356899999999999754
Q ss_pred cccccccCH--HHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhccc
Q psy8073 515 AKGVKCIDR--EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 515 ~~~~~~v~~--~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
+.+.. ..+..++..++++++++||++|.| ++.|..+.+.+....|.
T Consensus 190 ----~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 190 ----KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp ----HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred ----HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 11222 455666667788999999999999 89999999988876554
No 162
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.72 E-value=3.1e-17 Score=167.25 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=100.6
Q ss_pred CccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCC----------ChhcHHHHHHHHHHHHH
Q psy8073 423 STLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVT----------NERSFNSVKNWVEAVEE 492 (593)
Q Consensus 423 ~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~----------~~~s~~~~~~~~~~i~~ 492 (593)
+|+| +....+.+++ +.+++|||||+++++.++..||++++++|+|||++ +..++.....|+..+..
T Consensus 153 ~TiG--i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 153 PTTG--IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CCCS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred ceee--EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 3445 3444555555 89999999999999999999999999999999665 55667777777766654
Q ss_pred Hc-CCCCcEEEEEeCCCCCCccc---------c-ccccccCHHHHHHHH----------HHhCCeEEEEcCCCCCCHHHH
Q psy8073 493 VT-ENSIPIVICANKVDLRADAQ---------A-KGVKCIDREVGEKLA----------QQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 493 ~~-~~~~piivV~NK~Dl~~~~~---------~-~~~~~v~~~~~~~l~----------~~~~~~~~e~Sa~~g~gi~~l 551 (593)
.. ..++|+|||+||+|+....- + -....+..+.+..+. ...++.+++|||+++.||..+
T Consensus 229 ~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~v 308 (327)
T 3ohm_A 229 YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV 308 (327)
T ss_dssp SGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHH
T ss_pred hhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHH
Confidence 32 25699999999999854210 0 000135566676663 234556889999999999999
Q ss_pred HHHHHHHHHhhc
Q psy8073 552 LIALSRHVYVFI 563 (593)
Q Consensus 552 ~~~L~~~l~~~~ 563 (593)
|..+...+....
T Consensus 309 F~~v~~~Il~~~ 320 (327)
T 3ohm_A 309 FAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.72 E-value=1.8e-18 Score=185.10 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=105.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--ccccCC---------------------------CCccceeeEEEEEEECCee
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--VFLNKL---------------------------GSTLGVDFQMKTIRVDERN 440 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~~~---------------------------~~t~g~~~~~~~~~~~~~~ 440 (593)
...++|+++|++|+|||||+++|+.. .+.... ....|.+.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999864 221100 0012233333333344445
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHH----cCCCC-cEEEEEeCCCCCCcccc
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEV----TENSI-PIVICANKVDLRADAQA 515 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~-piivV~NK~Dl~~~~~~ 515 (593)
+.+.||||||+++|...+..++..||++|+|||+++ .+|+.+..|......+ ...++ |+|+|+||+|+......
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 789999999999998888899999999999999998 6666544333222221 11234 69999999999752100
Q ss_pred ccccccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHHH
Q psy8073 516 KGVKCIDREVGEKLAQQYG-----AIFMETSSKSGDNILDALI 553 (593)
Q Consensus 516 ~~~~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~~l~~ 553 (593)
..........+..++..++ +++++|||++|.||.+++.
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 0000122345566666665 6799999999999986543
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.71 E-value=2.3e-17 Score=181.86 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=109.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCcccc----CCCCccceeeEEEEE------------EECCeeEEEEEEecCCchhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLN----KLGSTLGVDFQMKTI------------RVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~----~~~~t~g~~~~~~~~------------~~~~~~~~~~l~DTaG~e~~ 454 (593)
+.++|+|+|++|+|||||+++|++..+.. ....++|..+..... .++.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999998765432 122344443322110 00011125899999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccc-----------cccCH
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGV-----------KCIDR 523 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~-----------~~v~~ 523 (593)
..++..+++.||++|+|||++++...+....|. .+. ..++|+|+|+||+|+...+..... ..+..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~---~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~ 159 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILR---MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQ 159 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHH---HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHH---HcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHH
Confidence 888888999999999999999943333333332 222 245899999999999653211000 00000
Q ss_pred -------HHHHHHHHH--------------hCCeEEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 524 -------EVGEKLAQQ--------------YGAIFMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 524 -------~~~~~l~~~--------------~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
+....+... ..++++++||++|.||++++.+|...+...
T Consensus 160 ~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 160 KLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 111112111 113799999999999999999999877643
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.71 E-value=5.2e-19 Score=190.33 Aligned_cols=160 Identities=18% Similarity=0.254 Sum_probs=106.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVM 469 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi 469 (593)
.+.++|+|+|++|+|||||+++|.+..+.....+.++.+.....+..++ ..+.||||||++.|..++..++..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999987654332222211222222222333 57899999999999988889999999999
Q ss_pred EEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC--CeEEEEcCCCCCC
Q psy8073 470 LLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG--AIFMETSSKSGDN 547 (593)
Q Consensus 470 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~--~~~~e~Sa~~g~g 547 (593)
+|||++++...+....| ..+ ...++|+|+|+||+|+.......-...+.. ...++..++ +++++|||++|.|
T Consensus 80 LVVda~~g~~~qT~e~l-~~~---~~~~vPiIVviNKiDl~~~~~~~v~~~l~~--~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHA---KAAQVPVVVAVNKIDKPEADPDRVKNELSQ--YGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHH---HHTTCCEEEEEECSSSSTTCCCCTTCCCCC--CCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EEeecccCccHHHHHHH-HHH---HhcCceEEEEEEeccccccCHHHHHHHHHH--hhhhHHHhCCCccEEEEeeeeccC
Confidence 99999985433333322 122 234589999999999965311100000000 000112233 6899999999999
Q ss_pred HHHHHHHHHH
Q psy8073 548 ILDALIALSR 557 (593)
Q Consensus 548 i~~l~~~L~~ 557 (593)
|++++.+|..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999864
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.70 E-value=2.7e-17 Score=171.79 Aligned_cols=148 Identities=7% Similarity=0.024 Sum_probs=106.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEe
Q psy8073 394 KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYD 473 (593)
Q Consensus 394 kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D 473 (593)
+|+++|++|+|||||+++|+ ..+.|+...+ ..+...+..+.||||||+++|......+++.||++|+|||
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~----~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM----YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE----EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE----EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 2233332222 2344444679999999999998778888899999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHcCCCCcE-EEEEe-CCCCCCccccccccccCHHHHHHHHHHh---CCeEEE--EcCCC--
Q psy8073 474 VTNERSFNSVKNWVEAVEEVTENSIPI-VICAN-KVDLRADAQAKGVKCIDREVGEKLAQQY---GAIFME--TSSKS-- 544 (593)
Q Consensus 474 ~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivV~N-K~Dl~~~~~~~~~~~v~~~~~~~l~~~~---~~~~~e--~Sa~~-- 544 (593)
+.. .+...+.|+..+... ++|. |+|+| |+|+ +... .....+....+...+ .+++++ +||++
T Consensus 93 -~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~----~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHA----IDELKAKLKVITSGTVLQDWECISLNTNKSAKN 162 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHH----HHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred -CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHH----HHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence 544 334455565555443 3677 89999 9999 4310 000113344444443 368999 99999
Q ss_pred -CCCHHHHHHHHHHHHHh
Q psy8073 545 -GDNILDALIALSRHVYV 561 (593)
Q Consensus 545 -g~gi~~l~~~L~~~l~~ 561 (593)
|.||++++..|...+..
T Consensus 163 ~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 163 PFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhccc
Confidence 99999999999988764
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.70 E-value=3.5e-18 Score=184.32 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=93.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhc--CccccC-----------CC----------------CccceeeEE--EEEEECC
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSK--EVFLNK-----------LG----------------STLGVDFQM--KTIRVDE 438 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~--~~~~~~-----------~~----------------~t~g~~~~~--~~~~~~~ 438 (593)
...++|+++|++|+|||||+++|+. +.+... .+ ...|.+... ..+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 4568999999999999999999974 221100 00 011222222 223334
Q ss_pred eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh---cHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCcc-
Q psy8073 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER---SFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADA- 513 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~- 513 (593)
+..+.||||||+++|...+..++..+|++|+|||++++. +|....+|...+......++| +|||+||+|+....
T Consensus 120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 478999999999999888888899999999999999863 333223344444333334577 99999999996421
Q ss_pred ccccccccCHHHHHHHHHHh-------CCeEEEEcCCCCCCHHHHH
Q psy8073 514 QAKGVKCIDREVGEKLAQQY-------GAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 514 ~~~~~~~v~~~~~~~l~~~~-------~~~~~e~Sa~~g~gi~~l~ 552 (593)
.... ..........+...+ ++++++|||++|.||.+++
T Consensus 199 ~~~~-~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEER-YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHH-HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 0000 011223445555554 3569999999999998765
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.69 E-value=3.5e-18 Score=183.84 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=102.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--ccccC-----------C-----------C-----CccceeeEEEEEEECCee
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--VFLNK-----------L-----------G-----STLGVDFQMKTIRVDERN 440 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~~-----------~-----------~-----~t~g~~~~~~~~~~~~~~ 440 (593)
...++|+++|++|+|||||+++|++. .+... . . ...|.+.......++...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999864 11100 0 0 012222222222334445
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh---cH----HHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCc
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER---SF----NSVKNWVEAVEEVTENSIP-IVICANKVDLRAD 512 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~---s~----~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~ 512 (593)
+.+.||||||+++|...+..++..||++|+|||++++. +| +... ++..+.. .++| +|+|+||+|+...
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH---cCCCeEEEEEEccccccC
Confidence 78999999999999888899999999999999999763 22 2222 2222222 3465 9999999999731
Q ss_pred cccccccccCHHHHHHHHHHhC-----CeEEEEcCCCCCCHHHH
Q psy8073 513 AQAKGVKCIDREVGEKLAQQYG-----AIFMETSSKSGDNILDA 551 (593)
Q Consensus 513 ~~~~~~~~v~~~~~~~l~~~~~-----~~~~e~Sa~~g~gi~~l 551 (593)
.. . ........+..++..++ +++++|||++|.||.++
T Consensus 161 ~~-~-~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DE-S-RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CH-H-HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CH-H-HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 00 0 00112234555555555 57999999999999754
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.69 E-value=1e-17 Score=170.23 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=103.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccC----CCCccc----------------------eeeE-------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK----LGSTLG----------------------VDFQ------------- 430 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~----~~~t~g----------------------~~~~------------- 430 (593)
...++|+|+|.+|||||||+|+|++..+.+. .+..++ +++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999876421 111121 1110
Q ss_pred ----------EEEEEECC-eeEEEEEEecCCch-------------hhhhhhHhhccCCCEEE-EEEeCCChhcHHHHHH
Q psy8073 431 ----------MKTIRVDE-RNVALQLWDTAGQE-------------RFRSMTKNYFRRADGVM-LLYDVTNERSFNSVKN 485 (593)
Q Consensus 431 ----------~~~~~~~~-~~~~~~l~DTaG~e-------------~~~~~~~~~~~~ad~vi-~v~D~~~~~s~~~~~~ 485 (593)
...+.+.+ ....+.||||||+. .+..++..|++.++.+| +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00011100 12579999999953 45677888999998776 7999988665444333
Q ss_pred HHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHH--HHHhC-CeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 486 WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKL--AQQYG-AIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 486 ~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l--~~~~~-~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
|.. .....+.|+|+|+||+|+..... ......... ....+ ++++++||++|.|+++++.+|.+.
T Consensus 184 ~~~---~~~~~~~~~i~V~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAK---EVDPQGQRTIGVITKLDLMDEGT------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHH---HHCTTCSSEEEEEECGGGSCTTC------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHH---HhCCCCCeEEEEEEccccCCCCc------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 433 33445689999999999975311 111111110 00112 357899999999999999998873
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.68 E-value=3.2e-17 Score=187.90 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=113.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCc-------ccc-------CCCCccceeeEEEEEEECCeeEEEEEEecCCchhh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEV-------FLN-------KLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF 454 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~-------~~~-------~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~ 454 (593)
....++|+|+|++|+|||||+++|++.. +.. ....+.|+++....+.++...+.+.||||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3456999999999999999999998641 100 01134555555444555555678999999999999
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
......++..+|++|+|||++++...+. ..|+..+... ++| +|||+||+|+..... .......++..+...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~IIVVINKiDLv~d~e---~le~i~eEi~elLk~~ 445 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYIIVFLNKCDMVDDEE---LLELVEMEVRELLSQY 445 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCEEEEEECCTTCCCHH---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeEEEEEeecccccchh---hHHHHHHHHHHHHHhc
Confidence 8888889999999999999998765444 3444444433 478 789999999975210 0011234455666666
Q ss_pred C-----CeEEEEcCCCC--------CCHHHHHHHHHHHHH
Q psy8073 534 G-----AIFMETSSKSG--------DNILDALIALSRHVY 560 (593)
Q Consensus 534 ~-----~~~~e~Sa~~g--------~gi~~l~~~L~~~l~ 560 (593)
+ ++++++||++| .||.+++++|...+.
T Consensus 446 G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 446 DFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 5 57999999999 468888888776553
No 171
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.67 E-value=2e-16 Score=161.87 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=97.6
Q ss_pred CccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCC----------ChhcHHHHHHHHHHHHH
Q psy8073 423 STLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVT----------NERSFNSVKNWVEAVEE 492 (593)
Q Consensus 423 ~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~----------~~~s~~~~~~~~~~i~~ 492 (593)
+|+|. ....+.++ .+.++||||||+++|+.++..||++++++|+|||++ +..++.....|+..+..
T Consensus 147 ~TiGi--~~~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 147 KTTGI--HEYDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp CCCSC--EEEEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred ceeee--EEEEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 34453 33344444 488999999999999999999999999999999998 67788888887777655
Q ss_pred Hc-CCCCcEEEEEeCCCCCCcccc---------ccccccCHHHHHHHH-HHh--------------------------CC
Q psy8073 493 VT-ENSIPIVICANKVDLRADAQA---------KGVKCIDREVGEKLA-QQY--------------------------GA 535 (593)
Q Consensus 493 ~~-~~~~piivV~NK~Dl~~~~~~---------~~~~~v~~~~~~~l~-~~~--------------------------~~ 535 (593)
.. ..++|+|||+||+|+....-. ........+.+..+. ..+ ++
T Consensus 223 ~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (340)
T 4fid_A 223 NEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKV 302 (340)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEE
T ss_pred hhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcce
Confidence 43 356999999999998542100 000001234443332 223 35
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 536 IFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 536 ~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
.+++|||+++.||..+|..+...+..
T Consensus 303 y~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 303 YTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 67899999999999999999998875
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.66 E-value=1.5e-16 Score=158.72 Aligned_cols=118 Identities=13% Similarity=0.142 Sum_probs=83.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCcccee--eEEEEEEECCeeEEEEEEecCCchhhhhhhHhhc------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVD--FQMKTIRVDERNVALQLWDTAGQERFRSMTKNYF------ 462 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~--~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~------ 462 (593)
+.++|+|+|++|||||||+|+|++..+.. .....+++ .....+..++ ..+.||||||++.|......++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 56999999999999999999999886422 22333333 3334445555 7899999999877644433333
Q ss_pred ---cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCC--CcEEEEEeCCCCCC
Q psy8073 463 ---RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS--IPIVICANKVDLRA 511 (593)
Q Consensus 463 ---~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piivV~NK~Dl~~ 511 (593)
..+|++|+|+|++.......-..|+..+......+ .|+++|+||+|+..
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 27899999999976542222346777777765433 39999999999963
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.66 E-value=4e-18 Score=188.51 Aligned_cols=155 Identities=20% Similarity=0.254 Sum_probs=81.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCc---ccc----------C----------------CCCccceeeEEEEEEECCe
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEV---FLN----------K----------------LGSTLGVDFQMKTIRVDER 439 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~---~~~----------~----------------~~~t~g~~~~~~~~~~~~~ 439 (593)
....++|+|+|++|+|||||+++|+... ... . .....|+++......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996421 000 0 0012344555444455555
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh-------cHHHHHHHHHHHHHHcCCCCc-EEEEEeCCCCCC
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER-------SFNSVKNWVEAVEEVTENSIP-IVICANKVDLRA 511 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~-------s~~~~~~~~~~i~~~~~~~~p-iivV~NK~Dl~~ 511 (593)
+..+.||||||+++|...+..++..||++|+|||++++. ..+.. .++..+. ..++| +|||+||+|+..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~-e~l~~~~---~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR-EHAYLLR---ALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHH-HHHHHHH---HSSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHH-HHHHHHH---HcCCCeEEEEEecccccc
Confidence 578999999999999888888999999999999998643 11111 1111222 23465 999999999865
Q ss_pred ccccccccccCHHHHHHHH-HHhCC-----eEEEEcCCCCCCHH
Q psy8073 512 DAQAKGVKCIDREVGEKLA-QQYGA-----IFMETSSKSGDNIL 549 (593)
Q Consensus 512 ~~~~~~~~~v~~~~~~~l~-~~~~~-----~~~e~Sa~~g~gi~ 549 (593)
... .... ........+. ..+++ ++++|||++|.||.
T Consensus 330 ~~~-~~~~-~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSE-DRFQ-EIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCH-HHHH-HHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccH-HHHH-HHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 210 0001 1112233333 33343 69999999999998
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.66 E-value=3.9e-16 Score=175.21 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=86.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCC----------------ccceeeEEEEEEECCeeEEEEEEecCCch
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGS----------------TLGVDFQMKTIRVDERNVALQLWDTAGQE 452 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~----------------t~g~~~~~~~~~~~~~~~~~~l~DTaG~e 452 (593)
..++.+|+|+|++|+|||||+++|++......... ..|.++......+....+.+.||||||++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 45678999999999999999999984321100000 12334444444444445889999999999
Q ss_pred hhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 453 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
+|...+..+++.+|++|+|+|+++....... .|+..+.. .++|+|+|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence 9988899999999999999999887665544 34333433 358999999999986
No 175
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.65 E-value=3.2e-16 Score=176.63 Aligned_cols=167 Identities=13% Similarity=0.220 Sum_probs=108.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccce--------------ee--------------------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV--------------DF-------------------------- 429 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~--------------~~-------------------------- 429 (593)
..+++|+|+|.+|||||||+|+|++..+... +..+++ ++
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v-~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPS-DVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCC-CCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 4569999999999999999999998764321 111111 00
Q ss_pred ---------------EEEEEEECCee--EEEEEEecCCchh---hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHH
Q psy8073 430 ---------------QMKTIRVDERN--VALQLWDTAGQER---FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEA 489 (593)
Q Consensus 430 ---------------~~~~~~~~~~~--~~~~l~DTaG~e~---~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~ 489 (593)
....+.+.... ..+.||||||... ....+..+++.||++|+|+|++++.+......|...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 00011111100 2589999999654 345677889999999999999998888777666544
Q ss_pred HHHHcCCCCcEEEEEeCCCCCCccccccccc----------cCHHHHHHHHHH--------hCCeEEEEcCC--------
Q psy8073 490 VEEVTENSIPIVICANKVDLRADAQAKGVKC----------IDREVGEKLAQQ--------YGAIFMETSSK-------- 543 (593)
Q Consensus 490 i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~----------v~~~~~~~l~~~--------~~~~~~e~Sa~-------- 543 (593)
+. ..+.|+++|+||+|+...... .... +.......+... .+..+++|||+
T Consensus 226 l~---~~~~~iiiVlNK~Dl~~~~~~-~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 IK---GRGLTVFFLVNAWDQVRESLI-DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TT---TSCCCEEEEEECGGGGGGGCS-STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HH---hhCCCEEEEEECccccccccc-ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 43 335799999999998643100 0000 000001112111 12368999999
Q ss_pred ------CCCCHHHHHHHHHHHHHh
Q psy8073 544 ------SGDNILDALIALSRHVYV 561 (593)
Q Consensus 544 ------~g~gi~~l~~~L~~~l~~ 561 (593)
+|.|+++++.+|.+.+..
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 176
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.65 E-value=7.3e-16 Score=168.06 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=81.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--cccc--C----------------CCCccceeeEEEEEEECCeeEEEEEEecC
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--VFLN--K----------------LGSTLGVDFQMKTIRVDERNVALQLWDTA 449 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~--~----------------~~~t~g~~~~~~~~~~~~~~~~~~l~DTa 449 (593)
.+.++|+|+|++|||||||+++|+.. .+.. . ...+.|.++......+...++.+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 35689999999999999999999863 1100 0 01123333332233333344889999999
Q ss_pred CchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 450 G~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
|+++|...+..+++.+|++|+|||++++....... + +......++|+|+|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~-~---~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRK-L---MEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-H---HHHHTTTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHH-H---HHHHHHcCCCEEEEEcCcCCccc
Confidence 99999888888999999999999999875543322 2 22233456999999999999653
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=1.2e-16 Score=166.94 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=106.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCcccee---e--------------------------------------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVD---F-------------------------------------- 429 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~---~-------------------------------------- 429 (593)
..++|+|+|++|||||||+|+|++..|.+....++... .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999986633322221100 0
Q ss_pred -----------EEEEEEE-CCeeEEEEEEecCCchhh-------------hhhhHhhccCCCEEEEEEeCCChhcHHHHH
Q psy8073 430 -----------QMKTIRV-DERNVALQLWDTAGQERF-------------RSMTKNYFRRADGVMLLYDVTNERSFNSVK 484 (593)
Q Consensus 430 -----------~~~~~~~-~~~~~~~~l~DTaG~e~~-------------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~ 484 (593)
....+.+ ......+.||||||+.++ ..++..|++++|++|+|+|.++..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0001111 011235899999998765 667889999999999999876543221 3
Q ss_pred HHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 485 NWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 485 ~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
.|+..+......+.|+|+|+||+|+.... .........+...++..|+++|++++.|+.+.+..+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKG------TDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTT------CCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCc------ccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 46666777777778999999999997531 12233333333445677999999999888876655433
No 178
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.64 E-value=1.2e-16 Score=162.51 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=90.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcC-ccccCC--------CCccceeeEEEEEEECCeeEEEEEEecCCc-------hhh
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKE-VFLNKL--------GSTLGVDFQMKTIRVDERNVALQLWDTAGQ-------ERF 454 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~-~~~~~~--------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~-------e~~ 454 (593)
-.++|+|+|++|||||||+|+|++. .++... .++.+.......+..++....+++|||+|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3489999999999999999998875 433221 122222221222222344578999999997 555
Q ss_pred hhhhH-------hhccC-------------CCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccc
Q psy8073 455 RSMTK-------NYFRR-------------ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514 (593)
Q Consensus 455 ~~~~~-------~~~~~-------------ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~ 514 (593)
..+.. .+++. |+++|++.+.+.. ++..+. ...+.... ..+|+++|+||+|+.....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHHH
Confidence 55443 44432 3445555554321 232222 13344443 3579999999999875311
Q ss_pred cccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhccc
Q psy8073 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVFIPC 565 (593)
Q Consensus 515 ~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~~~ 565 (593)
..+..+.+..++..+++.|+++||++| |++++|..+.+.+....|.
T Consensus 173 ----~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~ 218 (301)
T 2qnr_A 173 ----RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF 218 (301)
T ss_dssp ----HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred ----HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence 113345677888889999999999999 9999999999999876553
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.62 E-value=6.2e-16 Score=154.93 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=84.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhh-------hHhh-
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSM-------TKNY- 461 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~-------~~~~- 461 (593)
...++|+|+|.+|||||||+|+|++..+. .+..+.++++......++..++.+.||||||++.+... ...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 34689999999999999999999988642 23344445544444444444588999999998665322 1122
Q ss_pred -ccCCCEEEEEEeCCChhcHHH-HHHHHHHHHHHcCCC--CcEEEEEeCCCCCCc
Q psy8073 462 -FRRADGVMLLYDVTNERSFNS-VKNWVEAVEEVTENS--IPIVICANKVDLRAD 512 (593)
Q Consensus 462 -~~~ad~vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~--~piivV~NK~Dl~~~ 512 (593)
.+.+|++|+|||++.. ++.. ...|+..+......+ .|+|+|+||+|+...
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 3579999999999753 3332 246777776654433 699999999998653
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.62 E-value=1.3e-15 Score=155.90 Aligned_cols=163 Identities=17% Similarity=0.165 Sum_probs=98.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccC----CCCccceeeEEE---------------------------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK----LGSTLGVDFQMK--------------------------------- 432 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~----~~~t~g~~~~~~--------------------------------- 432 (593)
...++|+|+|.+|||||||+|+|++..+.+. .+..++......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4567999999999999999999999875221 111111100100
Q ss_pred --------------------EEE-ECCeeEEEEEEecCCchh-------------hhhhhHhhccCCCEEEEEEeCCChh
Q psy8073 433 --------------------TIR-VDERNVALQLWDTAGQER-------------FRSMTKNYFRRADGVMLLYDVTNER 478 (593)
Q Consensus 433 --------------------~~~-~~~~~~~~~l~DTaG~e~-------------~~~~~~~~~~~ad~vi~v~D~~~~~ 478 (593)
.+. .......+.||||||+.. +...+..++..+|++|+|+|+++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 000 111125699999999643 5667788999999999999974332
Q ss_pred -cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEEcCCC------CCCHHHH
Q psy8073 479 -SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKS------GDNILDA 551 (593)
Q Consensus 479 -s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~------g~gi~~l 551 (593)
.... +...+......+.|+|+|+||+|+..... ............++..++++|+++ +.|+.++
T Consensus 182 ~~~~~---~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l 252 (315)
T 1jwy_B 182 LANSD---ALQLAKEVDPEGKRTIGVITKLDLMDKGT------DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRES 252 (315)
T ss_dssp STTCS---HHHHHHHHCSSCSSEEEEEECTTSSCSSC------CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHH
T ss_pred hhhhH---HHHHHHHhCCCCCcEEEEEcCcccCCcch------HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHH
Confidence 1111 11223333455689999999999975411 111111100011224566666554 6899999
Q ss_pred HHHHHHHHHh
Q psy8073 552 LIALSRHVYV 561 (593)
Q Consensus 552 ~~~L~~~l~~ 561 (593)
+..+...+..
T Consensus 253 ~~~~~~~~~~ 262 (315)
T 1jwy_B 253 LKSEILYFKN 262 (315)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9998888765
No 181
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.61 E-value=3e-16 Score=159.58 Aligned_cols=134 Identities=21% Similarity=0.179 Sum_probs=109.3
Q ss_pred HHHHHHhcCccc-cCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChh-cHHHHH
Q psy8073 407 CFIYRFSKEVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNER-SFNSVK 484 (593)
Q Consensus 407 SLln~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~ 484 (593)
+|+++++.+.|. ..+.+|+|..+. ..+..++ .++|||| +++|..+++.++++||++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 788899999988 788999994443 3332222 6899999 9999999999999999999999999997 788888
Q ss_pred HHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhC--CeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 485 NWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYG--AIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 485 ~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~--~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
.|+..+.. .++|+|||+||+||.+. +.+ +++..++..++ +.+++|||++|.||+++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~------~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDE------DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCH------HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCc------hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 89987765 35899999999999753 112 34566777777 88999999999999999987653
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.61 E-value=4.5e-15 Score=167.13 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=85.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC--ccc------c------------CCCCccceeeEEEEEEECCeeEEEEEEec
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE--VFL------N------------KLGSTLGVDFQMKTIRVDERNVALQLWDT 448 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~--~~~------~------------~~~~t~g~~~~~~~~~~~~~~~~~~l~DT 448 (593)
..+..+|+|+|++|+|||||+++|+.. .+. . ..+.|++ .....+... ++.+.||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~--~~~i~liDT 84 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWK--DHRINIIDT 84 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEET--TEEEEEECC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEEC--CeEEEEEEC
Confidence 356789999999999999999999842 110 0 1122222 222233334 478999999
Q ss_pred CCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 449 aG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
||+..|...+..+++.+|++|+|||++++.+++....|.... . .++|+++|+||+|+...
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~-~---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE-K---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-H---TTCCEEEEEECTTSTTC
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH-H---cCCCEEEEEECCCcccC
Confidence 999999888999999999999999999988888777676432 2 35899999999998653
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.60 E-value=6.8e-15 Score=155.18 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=110.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcc--ccCCCCccceeeEEEEEEECCeeEEEEEEecCCchh----hhhhhH---hhc
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVF--LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER----FRSMTK---NYF 462 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~--~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~----~~~~~~---~~~ 462 (593)
+..|+|+|++|||||||+++|++... .....+| .......+.+++ ...+.+|||||... +..+.. ..+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftT--l~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTT--LSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCS--SCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccce--ecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 45799999999999999999988742 1112222 222333344443 25689999999632 212222 234
Q ss_pred cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcC--CCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeEEEE
Q psy8073 463 RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMET 540 (593)
Q Consensus 463 ~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~ 540 (593)
..++.+|+|+|++ ..++..+..|...+..+.. ...|.|+|+||+|+... .............++.++.+
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--------~~~~~l~~~l~~~g~~vi~i 304 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--------EAVKALADALAREGLAVLPV 304 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--------HHHHHHHHHHHTTTSCEEEC
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--------HHHHHHHHHHHhcCCeEEEE
Confidence 6799999999998 5667777777777665532 24799999999998642 11223333444557789999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 541 SSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 541 Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
||+++.||++++.+|.+.+....
T Consensus 305 SA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 305 SALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSC
T ss_pred ECCCccCHHHHHHHHHHHHHhcc
Confidence 99999999999999999997643
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.60 E-value=7.4e-16 Score=162.19 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=48.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccc--cCCCCccceeeEEEEE-------------------EECC-eeEEEEEEecCC
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFL--NKLGSTLGVDFQMKTI-------------------RVDE-RNVALQLWDTAG 450 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~--~~~~~t~g~~~~~~~~-------------------~~~~-~~~~~~l~DTaG 450 (593)
++|+|+|.||||||||+|+|++.... ..+.+|.........+ .+++ ..+++.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987521 1122232112221111 1233 247899999999
Q ss_pred chhh----hhhhH---hhccCCCEEEEEEeCCCh
Q psy8073 451 QERF----RSMTK---NYFRRADGVMLLYDVTNE 477 (593)
Q Consensus 451 ~e~~----~~~~~---~~~~~ad~vi~v~D~~~~ 477 (593)
+... ..+.. .+++.||++|+|||+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22332 457899999999999875
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.58 E-value=2.1e-14 Score=161.79 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=85.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC--cccc------------------CCCCccceeeEEEEEEECCeeEEEEEEec
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE--VFLN------------------KLGSTLGVDFQMKTIRVDERNVALQLWDT 448 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~------------------~~~~t~g~~~~~~~~~~~~~~~~~~l~DT 448 (593)
..+..+|+|+|++|+|||||+|+|+.. .+.. ..+.|++ .....+..++ +.+.||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~--~~~~~~~~~~--~~i~liDT 82 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT--SAATTAAWEG--HRVNIIDT 82 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------C--CSEEEEEETT--EEEEEECC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEe--eeeEEEEECC--eeEEEEEC
Confidence 355689999999999999999999852 2110 0111211 1122334444 78999999
Q ss_pred CCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 449 aG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
||+..|...+..+++.+|++|+|+|++++.++.....|.. +.. .++|+|+|+||+|+...
T Consensus 83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 9999998888899999999999999999888877766654 332 35899999999998653
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.57 E-value=2.3e-14 Score=161.50 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=85.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcC--cccc--CC--CC----------ccceeeEEEE--EEEC-----CeeEEEEE
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKE--VFLN--KL--GS----------TLGVDFQMKT--IRVD-----ERNVALQL 445 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~--~~~~--~~--~~----------t~g~~~~~~~--~~~~-----~~~~~~~l 445 (593)
..+..+|+|+|++|+|||||+++|+.. .+.. .. .. ..|.++.... +.++ +..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 456689999999999999999999743 1111 00 00 1222222222 2222 23488999
Q ss_pred EecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 446 ~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
|||||+.+|...+..+++.+|++|+|||+++....+....|... ...++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~----~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA----NKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH----HHcCCCEEEEEeCCCcccc
Confidence 99999999988889999999999999999998777666555432 2335899999999998653
No 187
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.57 E-value=5e-15 Score=154.89 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=102.2
Q ss_pred CccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCC----------hhcHHHHHHHHHHHHH
Q psy8073 423 STLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTN----------ERSFNSVKNWVEAVEE 492 (593)
Q Consensus 423 ~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~----------~~s~~~~~~~~~~i~~ 492 (593)
+|+|.++ ..+.+++ +.++||||||+++|+.++..||++|+++|+|||+++ ..+|..+..|+..+..
T Consensus 203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 4666654 4566665 899999999999999999999999999999999999 8899999999988876
Q ss_pred Hc-CCCCcEEEEEeCCCCCCccc---cccc----cc-----------------cCHHHHHHHH-----HH--------hC
Q psy8073 493 VT-ENSIPIVICANKVDLRADAQ---AKGV----KC-----------------IDREVGEKLA-----QQ--------YG 534 (593)
Q Consensus 493 ~~-~~~~piivV~NK~Dl~~~~~---~~~~----~~-----------------v~~~~~~~l~-----~~--------~~ 534 (593)
.. ..++|+|||+||+|+..... .... .. -..+.+..++ .. .+
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~ 358 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY 358 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence 42 35699999999999853211 0000 00 0134444442 22 24
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 535 AIFMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 535 ~~~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
+.+++|||+++.||..+|.++...+...
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence 5678999999999999999998887654
No 188
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.56 E-value=8.9e-15 Score=151.84 Aligned_cols=157 Identities=14% Similarity=0.114 Sum_probs=105.6
Q ss_pred CCcHHHH--HHHHhcCccccC-------CCCccceeeEEEEEEECCeeEEEEEEecCCchhhhhhhHhhccCCCEEEEEE
Q psy8073 402 AVGKSCF--IYRFSKEVFLNK-------LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLY 472 (593)
Q Consensus 402 nvGKSSL--ln~l~~~~~~~~-------~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~ 472 (593)
.+.|--| +.+++...+.+. ..+|.|.+. ..+.+++ +.++||||||++.++.++..||++++++|+||
T Consensus 157 ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~ 232 (362)
T 1zcb_A 157 ESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLV 232 (362)
T ss_dssp TTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred ccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEE
Confidence 3444444 555555443322 345666554 4555665 88999999999999999999999999999999
Q ss_pred eCCC----------hhcHHHHHHHHHHHHHHc-CCCCcEEEEEeCCCCCCccc---------ccc-ccccCHHHHHHHHH
Q psy8073 473 DVTN----------ERSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADAQ---------AKG-VKCIDREVGEKLAQ 531 (593)
Q Consensus 473 D~~~----------~~s~~~~~~~~~~i~~~~-~~~~piivV~NK~Dl~~~~~---------~~~-~~~v~~~~~~~l~~ 531 (593)
|+++ ..++.....|+..+.... ..++|+|||+||+|+..... +.. ...+..+.+..++.
T Consensus 233 dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~ 312 (362)
T 1zcb_A 233 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV 312 (362)
T ss_dssp ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred ECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHH
Confidence 9999 678888888887776542 35689999999999853210 000 01145566666541
Q ss_pred -----------HhCCeEEEEcCCCCCCHHHHHHHHHHHHHhh
Q psy8073 532 -----------QYGAIFMETSSKSGDNILDALIALSRHVYVF 562 (593)
Q Consensus 532 -----------~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~ 562 (593)
..++.+++|||++|.||.++|.++...+...
T Consensus 313 ~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 313 ECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999988653
No 189
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.56 E-value=6.4e-15 Score=152.35 Aligned_cols=130 Identities=11% Similarity=0.086 Sum_probs=95.5
Q ss_pred EEEECC----eeEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCC----------ChhcHHHHHHHHHHHHHHc-CCC
Q psy8073 433 TIRVDE----RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVT----------NERSFNSVKNWVEAVEEVT-ENS 497 (593)
Q Consensus 433 ~~~~~~----~~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~----------~~~s~~~~~~~~~~i~~~~-~~~ 497 (593)
.+.+++ ..+.++||||||+++|+.++..||++++++|+|||++ +..++..+..|+..+.... ..+
T Consensus 171 ~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 171 QFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp EECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred EEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 344555 5689999999999999999999999999999999998 7788988888888776542 256
Q ss_pred CcEEEEEeCCCCCCccccc-cc--------------cccCHHHHHHHHHH----------------hCCeEEEEcCCCCC
Q psy8073 498 IPIVICANKVDLRADAQAK-GV--------------KCIDREVGEKLAQQ----------------YGAIFMETSSKSGD 546 (593)
Q Consensus 498 ~piivV~NK~Dl~~~~~~~-~~--------------~~v~~~~~~~l~~~----------------~~~~~~e~Sa~~g~ 546 (593)
+|+|||+||+|+....... .. .....+.+..++.. ..+.+++|||++|.
T Consensus 251 ~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~ 330 (354)
T 2xtz_A 251 TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK 330 (354)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH
T ss_pred CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch
Confidence 9999999999985321000 00 00124555555332 12346899999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy8073 547 NILDALIALSRHVYVF 562 (593)
Q Consensus 547 gi~~l~~~L~~~l~~~ 562 (593)
||.++|.++.+.+...
T Consensus 331 nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 331 LVKKTFKLVDETLRRR 346 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999888653
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=3.6e-15 Score=157.41 Aligned_cols=158 Identities=14% Similarity=0.175 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccC-C-------CCccceeeEEEEEEECCeeEEEEEEecCCchhhh-------h
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNK-L-------GSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR-------S 456 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~-~-------~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~-------~ 456 (593)
.++|+|+|++|||||||+|+|++..+... . .+|.+..+....+..++....+++|||+|...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 47899999999999999999998865211 1 1222222222222223333578999999975431 1
Q ss_pred ------------------hhHhhccCCCEEEEEEeCCCh-hcHHHHH-HHHHHHHHHcCCCCcEEEEEeCCCCCCccccc
Q psy8073 457 ------------------MTKNYFRRADGVMLLYDVTNE-RSFNSVK-NWVEAVEEVTENSIPIVICANKVDLRADAQAK 516 (593)
Q Consensus 457 ------------------~~~~~~~~ad~vi~v~D~~~~-~s~~~~~-~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~ 516 (593)
+++.++.++++.+++|+.+.. .++.... .|+..+. . ++|+|+|+||+|+...
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~-~v~iIlVinK~Dll~~---- 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-KVNIIPLIAKADTLTP---- 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T-TSEEEEEEESTTSSCH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c-cCcEEEEEEcccCccH----
Confidence 223455666665555555432 2333332 4655553 2 6899999999998653
Q ss_pred cccccCH--HHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 517 GVKCIDR--EVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 517 ~~~~v~~--~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
+.+.. ..+...+..+++.++++||+++.++.+++..|...+
T Consensus 183 --~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 --EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp --HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred --HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 12322 456667778899999999999999998877766544
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.54 E-value=6.9e-16 Score=160.64 Aligned_cols=159 Identities=21% Similarity=0.246 Sum_probs=97.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCC----CCccc----------------------eeeE-------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKL----GSTLG----------------------VDFQ------------- 430 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~----~~t~g----------------------~~~~------------- 430 (593)
...++|+|+|.+|||||||+|+|++..+.+.. +..++ +++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999998764221 11122 1110
Q ss_pred ----------EEEEEECC-eeEEEEEEecCCch-------------hhhhhhHhhccCCC-EEEEEEeCCChhcHHHHHH
Q psy8073 431 ----------MKTIRVDE-RNVALQLWDTAGQE-------------RFRSMTKNYFRRAD-GVMLLYDVTNERSFNSVKN 485 (593)
Q Consensus 431 ----------~~~~~~~~-~~~~~~l~DTaG~e-------------~~~~~~~~~~~~ad-~vi~v~D~~~~~s~~~~~~ 485 (593)
...+.+.+ ....+.||||||.. .+..+...|+..++ ++++|.|++....-. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---H
Confidence 00111111 12569999999952 45667777887665 555566665433222 2
Q ss_pred HHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHH--HHHHhC-CeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 486 WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEK--LAQQYG-AIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 486 ~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~--l~~~~~-~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
|...+....+.+.|+|+|+||+|+..... .+ ...... +....+ +.++++||++|.|+.+++.++..
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~-----~~-~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGT-----DA-RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTC-----CC-HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcch-----hH-HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33345555566799999999999975311 01 111110 001123 25788999999999999999876
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=4.4e-14 Score=145.78 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=114.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccc--cCCCCccceeeEEEEEEECCe---------------eEEEEEEecCCchhh
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFL--NKLGSTLGVDFQMKTIRVDER---------------NVALQLWDTAGQERF 454 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~---------------~~~~~l~DTaG~e~~ 454 (593)
+++|+|+|.||||||||+|+|++..+. ..+.+|.+.+. ..+.+++. +..+.||||||+.++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 479999999999999999999987532 12223433222 23344442 157999999998765
Q ss_pred h----hh---hHhhccCCCEEEEEEeCCCh----------hcHHHHHHHHHHH---------------------------
Q psy8073 455 R----SM---TKNYFRRADGVMLLYDVTNE----------RSFNSVKNWVEAV--------------------------- 490 (593)
Q Consensus 455 ~----~~---~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i--------------------------- 490 (593)
. .+ ...+++.+|++|+|+|+++. .++.++..|..++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~ 159 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAK 159 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHH
Confidence 3 22 23457999999999999862 2333333222221
Q ss_pred -------------HH-------------------H-cCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 491 -------------EE-------------------V-TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 491 -------------~~-------------------~-~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
.. + ....+|+|+|+||.|.... .......+..++...++.+
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~------~n~~~~~v~~~~~~~~~~~ 233 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFE------NNPYLDRVREIAAKEGAVV 233 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSS------SCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccccc------ccHHHHHHHHHHHHcCCCE
Confidence 00 0 0124899999999996421 1123455666777778999
Q ss_pred EEEcCCC----------------------CCCHHHHHHHHHHHHHhhccccccCCCCCCCcccccccccc
Q psy8073 538 METSSKS----------------------GDNILDALIALSRHVYVFIPCVYLKDLPYTSVLIFIPFQKQ 585 (593)
Q Consensus 538 ~e~Sa~~----------------------g~gi~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 585 (593)
+++||+. ..|++.++....+.+. ...+++... .....+.++.++.
T Consensus 234 i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~--li~~ft~g~-~e~raw~i~~G~t 300 (363)
T 1jal_A 234 VPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN--LQTYFTAGV-KEVRAWTVSVGAT 300 (363)
T ss_dssp EEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTT--EEEEEEECS-SEEEEEEEETTCB
T ss_pred EEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhC--CEEEECCCC-CCcceeEecCCCc
Confidence 9999764 3788888888666554 444455332 2335566665554
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.50 E-value=2.8e-14 Score=138.03 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=93.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCcccc----CCCCccceee--------EEEEEEECC------------------ee
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLN----KLGSTLGVDF--------QMKTIRVDE------------------RN 440 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~----~~~~t~g~~~--------~~~~~~~~~------------------~~ 440 (593)
..++|+|+|.+|||||||+++|+...... ......+.++ ......++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35799999999999999999998652111 0001111100 000111111 23
Q ss_pred EEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccc
Q psy8073 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKC 520 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~ 520 (593)
+.+.||||+|+-.... .+...++++|+|+|++..... ...+... . +.|+++|+||+|+.... .
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~------~ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAV------G 171 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHH------T
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcch------h
Confidence 5688999999511111 112367899999999865421 1111111 1 37899999999985321 1
Q ss_pred cCHHHHHHHHHHh--CCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 521 IDREVGEKLAQQY--GAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 521 v~~~~~~~l~~~~--~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
............. +++++++||++|.|+++++.+|...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 172 ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 2233344444443 4689999999999999999999987754
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.48 E-value=5.7e-14 Score=145.66 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=63.5
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVK 519 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~ 519 (593)
++.+.||||+|.... .......+|++++|+|++.+.....+.. .. ...|.++|+||+|+.....
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~------~i--l~~~~ivVlNK~Dl~~~~~----- 229 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR------GI--IEMADLVAVTKSDGDLIVP----- 229 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH-----
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH------HH--HhcCCEEEEeeecCCCchh-----
Confidence 367899999995321 2334678999999999987643322211 11 1368899999999854210
Q ss_pred ccCHHHHHHHHH----------HhCCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 520 CIDREVGEKLAQ----------QYGAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 520 ~v~~~~~~~l~~----------~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
. ......+.. .++.+++.|||++|.|+++++.+|...+..
T Consensus 230 -~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 230 -A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp -H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 0 001111211 124578999999999999999999887643
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.47 E-value=2.9e-14 Score=148.38 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=70.3
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVK 519 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~ 519 (593)
++.+.||||||.... ....+..+|++|+|+|.+....+..+..+ -..+|+++|+||+|+.....
T Consensus 171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~----- 234 (355)
T 3p32_A 171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKE----- 234 (355)
T ss_dssp TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHH-----
T ss_pred CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhH-----
Confidence 367999999995322 23345899999999998766544322211 12369999999999864311
Q ss_pred ccCHHHHHHHHHH----------hCCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 520 CIDREVGEKLAQQ----------YGAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 520 ~v~~~~~~~l~~~----------~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
. ......+... +++++++|||++|.||++++.+|.+.+..
T Consensus 235 -~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 235 -A-RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp -H-HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred -H-HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 0 1111122221 25689999999999999999999988765
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.47 E-value=1.3e-15 Score=148.04 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=92.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeE------------EEEEEEC-CeeE----------------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQ------------MKTIRVD-ERNV---------------- 441 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~------------~~~~~~~-~~~~---------------- 441 (593)
+.++|+|+|++|||||||+++|+...+.....++++.++. ...+.++ +..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999987554444445444433 2223332 2111
Q ss_pred ---EEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccc
Q psy8073 442 ---ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGV 518 (593)
Q Consensus 442 ---~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~ 518 (593)
.+.++||+|.-.. ...+-...+.++.|+|+........ ..... . ..|+++|+||+|+...
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~------ 179 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADA------ 179 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHH------
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCch------
Confidence 3455555552100 0011123455667777532211100 00001 1 3688999999998542
Q ss_pred cccCHHHHHHHHHHh--CCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 519 KCIDREVGEKLAQQY--GAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 519 ~~v~~~~~~~l~~~~--~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
..+.......++..+ ++++++|||++|.|++++|.+|.+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 113344555555544 5789999999999999999999988764
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.46 E-value=2.7e-13 Score=140.81 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcc--ccCCCCccceeeEEEEEEECC-------------------eeEEEEEEecCCc
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVF--LNKLGSTLGVDFQMKTIRVDE-------------------RNVALQLWDTAGQ 451 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~--~~~~~~t~g~~~~~~~~~~~~-------------------~~~~~~l~DTaG~ 451 (593)
++|+|+|.||||||||+|+|++... ...+.+|+..+.. ...+.+ .+..+.||||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 6899999999999999999987641 1111223222221 122221 2357999999997
Q ss_pred hhhh-------hhhHhhccCCCEEEEEEeCCCh----------hcHHHHHHHHHHH------------------------
Q psy8073 452 ERFR-------SMTKNYFRRADGVMLLYDVTNE----------RSFNSVKNWVEAV------------------------ 490 (593)
Q Consensus 452 e~~~-------~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i------------------------ 490 (593)
..+. .....+++.||++|+|+|+++. ..+.++..+...+
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 6542 2234468999999999999862 1222221111111
Q ss_pred -----------H----H-------------------Hc-CCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCC
Q psy8073 491 -----------E----E-------------------VT-ENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGA 535 (593)
Q Consensus 491 -----------~----~-------------------~~-~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~ 535 (593)
. . +. ...+|+|+|+||+|..-... ........++.++...++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~---~~n~~~~~v~~~a~~~g~ 236 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDG---RGNPQVEAVRRKALEEGA 236 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTC---TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhccc---chhhHHHHHHHHHHHcCC
Confidence 0 0 00 12379999999998421100 011334556777888889
Q ss_pred eEEEEcCCC----------------------CCCHHHHHHHHHHHHHhhccccccCCCCCCCcccccccccch
Q psy8073 536 IFMETSSKS----------------------GDNILDALIALSRHVYVFIPCVYLKDLPYTSVLIFIPFQKQI 586 (593)
Q Consensus 536 ~~~e~Sa~~----------------------g~gi~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~ 586 (593)
.++++||++ ..|++.++..+.+.+. ...+|+.. |.....+.++.++++
T Consensus 237 ~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~--li~~ft~g-~~e~~aw~i~~g~ta 306 (368)
T 2dby_A 237 EVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALD--LLTFFTAG-EKEVRAWTVRRGTKA 306 (368)
T ss_dssp EEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTT--EEEEEEES-SSCEEEEEEETTCBH
T ss_pred eEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhC--CEEEECCC-CCCcceEEecCCCcH
Confidence 999999887 3667777777555443 34445533 334456666666543
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.42 E-value=2.3e-13 Score=156.31 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=87.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCc--ccc----------------CCCCccceeeEEEEEE------------ECCe
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEV--FLN----------------KLGSTLGVDFQMKTIR------------VDER 439 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~--~~~----------------~~~~t~g~~~~~~~~~------------~~~~ 439 (593)
.+..+|+|+|++|+|||||+++|+... ... ..+.|++.......+. +++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 355799999999999999999998641 000 0112322222222232 2445
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
++.+.||||||+.+|...+..+++.+|++|+|||++++.+++....|..... .++|+|+|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 7899999999999998889999999999999999999999888776764432 358999999999985
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.41 E-value=2.9e-13 Score=139.97 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=65.6
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVK 519 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~ 519 (593)
++.+.||||||...+.. .....||++|+|+|++.+..+..+..+ . .++|+++|+||+|+.....
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~----- 211 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTN----- 211 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHH-----
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHH-----
Confidence 36799999999755432 245899999999999765432111110 0 1268899999999965311
Q ss_pred ccCH--HHHHHHHHHh-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 520 CIDR--EVGEKLAQQY-------GAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 520 ~v~~--~~~~~l~~~~-------~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
+.. .........+ ..++++|||++|.|+++++.+|...+.
T Consensus 212 -~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 -VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 110 1111111111 357899999999999999999988765
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.41 E-value=3.3e-13 Score=147.90 Aligned_cols=119 Identities=20% Similarity=0.306 Sum_probs=82.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcccc-CCCCccceeeEEEEEEECCe-----------------------e-----
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLN-KLGSTLGVDFQMKTIRVDER-----------------------N----- 440 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~g~~~~~~~~~~~~~-----------------------~----- 440 (593)
...++|+|+|.+|||||||+|+|++..+.. .++..++++...... .+.. +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~-~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVM-HGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEE-CCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEE-ECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 456899999999999999999999987642 222222222211110 0000 0
Q ss_pred ------------EEEEEEecCCchh-----------hhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCC
Q psy8073 441 ------------VALQLWDTAGQER-----------FRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS 497 (593)
Q Consensus 441 ------------~~~~l~DTaG~e~-----------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~ 497 (593)
..+.||||||+.. |...+..++..+|++|+|+|+++.........|+..+. ..+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GHE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TCG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hcC
Confidence 2589999999764 55677788999999999999988544445555655443 345
Q ss_pred CcEEEEEeCCCCCCc
Q psy8073 498 IPIVICANKVDLRAD 512 (593)
Q Consensus 498 ~piivV~NK~Dl~~~ 512 (593)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 799999999999753
No 201
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.36 E-value=2.7e-12 Score=140.52 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=83.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCc--------cccC------CC------CccceeeEEEEEEECCeeEEEEEEecCC
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEV--------FLNK------LG------STLGVDFQMKTIRVDERNVALQLWDTAG 450 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~--------~~~~------~~------~t~g~~~~~~~~~~~~~~~~~~l~DTaG 450 (593)
+.-+|+|+|+.++|||||..+|+... +... +. ..-|.++....+.+...++.+.|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 34589999999999999999986210 0000 00 0012222222222333348899999999
Q ss_pred chhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 451 ~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
+..|..-....++-+|++|+|+|+..+...+...-|.... ..++|+|+++||+|....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~----~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR----MRATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH----HhCCceEEEEecccchhc
Confidence 9999888889999999999999999988777777675433 345899999999998543
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.35 E-value=4.6e-12 Score=125.77 Aligned_cols=120 Identities=16% Similarity=0.030 Sum_probs=70.5
Q ss_pred EEEEEEecCCchhhhhhhH------hhccCCCEEEEEEeCCChhcHHHHHHHHH-HHHHHcCCCCcEEEEEeCCCCCCcc
Q psy8073 441 VALQLWDTAGQERFRSMTK------NYFRRADGVMLLYDVTNERSFNSVKNWVE-AVEEVTENSIPIVICANKVDLRADA 513 (593)
Q Consensus 441 ~~~~l~DTaG~e~~~~~~~------~~~~~ad~vi~v~D~~~~~s~~~~~~~~~-~i~~~~~~~~piivV~NK~Dl~~~~ 513 (593)
+.+.||||||+..+..... .++.. +++|+|+|++...+......... ........++|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4799999999876533211 24456 89999999865443333222111 1111112248999999999986532
Q ss_pred cccccccc--CH-HHHHH-----------------HHHHhC--CeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 514 QAKGVKCI--DR-EVGEK-----------------LAQQYG--AIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 514 ~~~~~~~v--~~-~~~~~-----------------l~~~~~--~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
........ .. ..... ++..++ ++++++||++|.|+++++.+|.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 10000000 00 00001 123333 478999999999999999999887754
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.34 E-value=9.1e-12 Score=129.21 Aligned_cols=139 Identities=15% Similarity=0.096 Sum_probs=86.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh-------hhhhHhhccC
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF-------RSMTKNYFRR 464 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~-------~~~~~~~~~~ 464 (593)
..+|+|||.||||||||+|+|++.......-+..+.+.....+.+++ ..++|+||||.-.- .......++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 36899999999999999999998642221112222445555566666 78999999995211 1223456789
Q ss_pred CCEEEEEEeCCChhcHHHHHHHHHHHHHHc--CCCCcEEEEEeCCCCCCcccc--ccccccCHHHHHHHHHHhC
Q psy8073 465 ADGVMLLYDVTNERSFNSVKNWVEAVEEVT--ENSIPIVICANKVDLRADAQA--KGVKCIDREVGEKLAQQYG 534 (593)
Q Consensus 465 ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~piivV~NK~Dl~~~~~~--~~~~~v~~~~~~~l~~~~~ 534 (593)
||++++|+|+++|.. +...+...+.... ....|.++|.||+|...-... ........++...+...+.
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence 999999999998743 2222333443332 134688999999997432111 1122344555555555444
No 204
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=99.34 E-value=4e-12 Score=107.84 Aligned_cols=86 Identities=10% Similarity=0.125 Sum_probs=73.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCC
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAG 82 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 82 (593)
..+|+++|..||+ ++|+|+..+++.+|+.+|++..++..||..+|.|+||.|+|+||+.+|..+.....+...+...+.
T Consensus 14 ~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~~~~~g~~lP~~LP~ 92 (106)
T 1eh2_A 14 KAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEKEPVPMSLPP 92 (106)
T ss_dssp HHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHHHHHHTCCCCSSCCT
T ss_pred HHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence 4678999999999 999999999999999999999999999999999999999999999999887655555555555666
Q ss_pred CCCCCCC
Q psy8073 83 AMSSEGP 89 (593)
Q Consensus 83 ~~~~~~~ 89 (593)
.+.+|..
T Consensus 93 ~l~pps~ 99 (106)
T 1eh2_A 93 ALVPPSK 99 (106)
T ss_dssp TTSCTTC
T ss_pred ccCChhh
Confidence 6666543
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.33 E-value=3.1e-12 Score=143.12 Aligned_cols=159 Identities=20% Similarity=0.215 Sum_probs=98.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCcccc-CCCCcc-------------------------------------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLN-KLGSTL------------------------------------------- 425 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~------------------------------------------- 425 (593)
...++|+|+|.+|+|||||+|+|++..+.+ ..+.+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 355799999999999999999999986522 111110
Q ss_pred -----ceee--EEEEEEECCeeEEEEEEecCCchh-------------hhhhhHhhc-cCCCEEEEEEeCCChhcHHHHH
Q psy8073 426 -----GVDF--QMKTIRVDERNVALQLWDTAGQER-------------FRSMTKNYF-RRADGVMLLYDVTNERSFNSVK 484 (593)
Q Consensus 426 -----g~~~--~~~~~~~~~~~~~~~l~DTaG~e~-------------~~~~~~~~~-~~ad~vi~v~D~~~~~s~~~~~ 484 (593)
|+.. ....+...+ ...+.|+||||.-. +..+...|+ ..+|++|+|+|++.+....+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0000 111111111 13488999999422 334445555 5789999999998764433322
Q ss_pred HHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHH--HHHHhC-CeEEEEcCCCCCCHHHHHHHHHHH
Q psy8073 485 NWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEK--LAQQYG-AIFMETSSKSGDNILDALIALSRH 558 (593)
Q Consensus 485 ~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~--l~~~~~-~~~~e~Sa~~g~gi~~l~~~L~~~ 558 (593)
. .+..+...+.|+|+|+||+|+..... ........ +....+ ..++.+||++|.|+++++.+|...
T Consensus 208 ~---ll~~L~~~g~pvIlVlNKiDlv~~~~------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 K---IAKEVDPQGQRTIGVITKLDLMDEGT------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp H---HHHHHCTTCSSEEEEEECTTSSCTTC------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred H---HHHHHHhcCCCEEEEEeCcccCCcch------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2 34444556789999999999975411 11111100 000112 256789999999999999998874
No 206
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=99.32 E-value=3.4e-12 Score=105.59 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=63.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSD 71 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~ 71 (593)
..+++++|..||+|++|+|+.+|++.+++.+|++..++..||..+|.|++|.|+|+||+.+|..+....
T Consensus 8 ~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~ 76 (92)
T 1fi6_A 8 RQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARK 76 (92)
T ss_dssp HHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999998775443
No 207
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=99.30 E-value=5.6e-12 Score=104.95 Aligned_cols=68 Identities=25% Similarity=0.320 Sum_probs=63.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNS 70 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~ 70 (593)
.++++++|..||+|++|+|+.+|++.+++.+|++..++..||..+|.|++|.|+|+||+.+|..+...
T Consensus 9 ~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~ 76 (95)
T 1c07_A 9 KAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQK 76 (95)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999887543
No 208
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=99.29 E-value=3.9e-12 Score=108.80 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=72.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCC
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAG 82 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 82 (593)
..+++++|..||+|++|+|+.+|++.+|+.+|++..++..||..+|.|++|.|+|+||+.+|..+.....+...+...+.
T Consensus 21 ~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~~~~~~G~~lP~~LP~ 100 (110)
T 1iq3_A 21 REYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPP 100 (110)
T ss_dssp HHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHHHHHHHTCCCCCCSSC
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCCCcccCh
Confidence 56899999999999999999999999999999999999999999999999999999999999887655444444445555
Q ss_pred CCCCC
Q psy8073 83 AMSSE 87 (593)
Q Consensus 83 ~~~~~ 87 (593)
.+.+|
T Consensus 101 ~l~pp 105 (110)
T 1iq3_A 101 TLQPE 105 (110)
T ss_dssp CSCSS
T ss_pred hhCcC
Confidence 55544
No 209
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=99.28 E-value=1.4e-11 Score=110.50 Aligned_cols=135 Identities=14% Similarity=0.245 Sum_probs=101.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..+++++|..||+|++|+|+..||..+++.+|. +..++..++..+|.|++|.|+|+||+.++........+......+
T Consensus 5 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 84 (143)
T 2obh_A 5 KQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKA 84 (143)
T ss_dssp HHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHHHHH
Confidence 357899999999999999999999999998885 456778999999999999999999999887654322222222233
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
+...+.... +......+..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+
T Consensus 85 F~~~D~d~~---G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dG~I~~~eF~~~~ 141 (143)
T 2obh_A 85 FKLFDDDET---GKISFKNLKRVAKELGENL-------TDEELQEMIDEA--DRD-GDGEVSEQEFLRIM 141 (143)
T ss_dssp HHHHCTTCS---SSBCHHHHHHHHHHTTCCC-------CHHHHHHHHHHH--CTT-SSSSBCHHHHHHHH
T ss_pred HHHhCCCCC---CcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCcEeHHHHHHHH
Confidence 333333322 2233456889998898765 888999999999 544 35567899998754
No 210
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=99.28 E-value=1.1e-11 Score=109.91 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=71.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCC
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAG 82 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 82 (593)
..+|+++|..|| |++|+|+..+++.+|+.+|++..++..||..+|.|+||+|+|+||+.+|+.+.........+...+.
T Consensus 50 ~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~gl~~~el~~I~~~~D~d~dG~Ld~~EF~~am~li~~~~~G~~lP~~LP~ 128 (139)
T 2jq6_A 50 KPTYDEIFYTLS-PVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEGHELPADLPP 128 (139)
T ss_dssp HHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTTSCCCSCCCT
T ss_pred HHHHHHHHHHhC-CCCCeECHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHcCCCCCcccCc
Confidence 578999999999 9999999999999999999999999999999999999999999999999887655444444444555
Q ss_pred CCCCC
Q psy8073 83 AMSSE 87 (593)
Q Consensus 83 ~~~~~ 87 (593)
.+.+|
T Consensus 129 ~l~pp 133 (139)
T 2jq6_A 129 HLVPP 133 (139)
T ss_dssp TSSCG
T ss_pred ccCCc
Confidence 55544
No 211
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=99.26 E-value=1.3e-11 Score=103.56 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=65.1
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDAR 73 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~ 73 (593)
.++++++|..||+|++|+|+.+|++.+|+.+|++..++..||..+|.|++|.|+|+||+.+|..+.....+
T Consensus 10 ~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g 80 (99)
T 1qjt_A 10 NPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNG 80 (99)
T ss_dssp CTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999999999999999999887554433
No 212
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=99.25 E-value=1.1e-11 Score=128.10 Aligned_cols=136 Identities=13% Similarity=0.269 Sum_probs=100.9
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+|+++|..||+|++|+|+..||..+|+.+|+ +..++..+|..+|.|++|.|+|+||+.++...............+|
T Consensus 302 ~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~~~D~DgDG~IdFeEFl~lms~~lk~~d~eeeLreAF 381 (440)
T 3u0k_A 302 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMARKMKDTDSEEEIREAF 381 (440)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHTC------CHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 47999999999999999999999999998874 5667889999999999999999999998865433222222222233
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+.. ..+......|+.++..+|... +.+++..++..+ +.+ ..+..+|++|+..+++
T Consensus 382 k~fDkD---gdG~IS~eELr~vL~~lGe~L-------SdeEIdeLfke~--D~D-gDGkIsyeEFvkmMtS 439 (440)
T 3u0k_A 382 RVFDKD---GNGYISAAELRHVMTNLGEKL-------TDEEVDEMIREA--DID-GDGQVNYEEFVQMMTA 439 (440)
T ss_dssp HHHCTT---CSSEECHHHHHHHHHHHTCCC-------CHHHHHHHHHHH--CTT-CSSSEEHHHHHHHHC-
T ss_pred HHHCCC---CcCcCCHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCcEeHHHHHHHhCC
Confidence 333332 223334456999999999876 889999999999 554 3556799999987754
No 213
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=6.1e-12 Score=117.32 Aligned_cols=135 Identities=16% Similarity=0.257 Sum_probs=102.7
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCC--HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ--PTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~--~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
++|+++|..||+|++|+|+..||..+++.+|.+ ..++..++..+|.|++|.|+|.+|+..+...............++
T Consensus 11 ~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~~~~i~~~ef~~~~~~~~~~~~~~~~l~~aF 90 (176)
T 2lhi_A 11 AEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAF 90 (176)
T ss_dssp GHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSCSSSBCTTHHHHHHTSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCCCccchHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 478999999999999999999999999988754 556779999999999999999999998765433322222222333
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+... .+......++.++..+|... +.+++..++..+ + +..+..+|++|+..+.+
T Consensus 91 ~~fD~d~---~G~I~~~el~~~l~~~g~~~-------~~~ei~~l~~~~--d--d~dG~I~~~EF~~~m~k 147 (176)
T 2lhi_A 91 KVFDKNG---DGLISAAELKHVLTSIGEKL-------TDAEVDDMLREV--S--DGSGEINIQQFAALLSK 147 (176)
T ss_dssp HHHCSSC---SSSBCHHHHHHHHHTTTCCC-------CHHHHHHHHHHH--H--TTSSCBCTTHHHHHHTC
T ss_pred HHhCCCC---CCcCcHHHHHHHHHHcCccc-------chHHHHHHHHhh--c--CCCCeEeHHHHHHHHHh
Confidence 3333322 23334456999999999876 889999999998 3 35678899999987743
No 214
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=99.22 E-value=4.9e-11 Score=107.29 Aligned_cols=136 Identities=13% Similarity=0.271 Sum_probs=101.0
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++.+|..+|.+++|+|+..|+..+++.+|. +..++..+|..+|.|++|.|+|+||+.++................+
T Consensus 10 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 89 (148)
T 1exr_A 10 AEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAF 89 (148)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhcccCCCcHHHHHHHH
Confidence 46899999999999999999999999997774 5567789999999999999999999999876543222222222233
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+... .+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.+
T Consensus 90 ~~~D~d~---~G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d~d-~dg~i~~~eF~~~~~~ 147 (148)
T 1exr_A 90 KVFDRDG---NGLISAAELRHVMTNLGEKL-------TDDEVDEMIREA--DID-GDGHINYEEFVRMMVS 147 (148)
T ss_dssp HHHSTTC---SSCBCHHHHHHHHHHTTCCC-------CHHHHHHHHHHH--CSS-SSSSBCHHHHHHHHHC
T ss_pred HHhCCCC---CCcCCHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCcEeHHHHHHHHcc
Confidence 3333322 22233456889998888765 888999999999 443 3456799999987653
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.21 E-value=2e-11 Score=125.85 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=63.5
Q ss_pred eEEEEEEecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccc
Q psy8073 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVK 519 (593)
Q Consensus 440 ~~~~~l~DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~ 519 (593)
++.+.|+||||...-. ......+|++++|+|++.+.....+..+ +. .+|.++|+||+|+....
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~------ 209 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGE------ 209 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCH------
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCch------
Confidence 3679999999964321 1235789999999998754322111111 11 13667888999975321
Q ss_pred ccCHHHHHHHHHH----------hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q psy8073 520 CIDREVGEKLAQQ----------YGAIFMETSSKSGDNILDALIALSRHVY 560 (593)
Q Consensus 520 ~v~~~~~~~l~~~----------~~~~~~e~Sa~~g~gi~~l~~~L~~~l~ 560 (593)
.........+... +..+++.+||++|.|+++++..|.+.+.
T Consensus 210 ~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 210 RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0111122223221 1356888999999999999999988664
No 216
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=99.21 E-value=4.7e-11 Score=102.32 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=69.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCC
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAG 82 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 82 (593)
.++++.+|..||+|++|+|+..||+.+++..+++..++..||..+|.|++|+|+|+||+.+|..+.....+...+...+.
T Consensus 13 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~~~~~~G~~lp~~lp~ 92 (111)
T 2kgr_A 13 RLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVAMSGQPLPPVLPP 92 (111)
T ss_dssp HHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTTCCCCSSCCG
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHCCCCCccccCc
Confidence 46789999999999999999999999999888999999999999999999999999999999877544333233333344
Q ss_pred CCCCC
Q psy8073 83 AMSSE 87 (593)
Q Consensus 83 ~~~~~ 87 (593)
.+.++
T Consensus 93 ~l~pp 97 (111)
T 2kgr_A 93 EYIPP 97 (111)
T ss_dssp GGSCT
T ss_pred ccCCC
Confidence 44443
No 217
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.21 E-value=6.1e-12 Score=140.47 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--cccc----CCCCc----------cceeeEEEEEEECCeeEEEEEEecCCchhhhh
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKE--VFLN----KLGST----------LGVDFQMKTIRVDERNVALQLWDTAGQERFRS 456 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~--~~~~----~~~~t----------~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~~ 456 (593)
-+|+|+|+.++|||||..+|+.. .... ..+.+ -|.+.....+.+...++.+.|+||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 47999999999999999998632 1110 00111 13344444444555568899999999999988
Q ss_pred hhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 457 MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 457 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
-....++-+|++|+|+|+..+...+...-|..... .++|+|+++||+|....
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~----~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK----MGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH----HTCSCEECCEECCSSSC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEeccccccC
Confidence 88899999999999999998877666665654433 24899999999997543
No 218
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=99.20 E-value=1.2e-11 Score=113.38 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=99.2
Q ss_pred HHHHHHHhHhCC--CCCCcccHHHHHHHHHcCCCCHH--HHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhh--hhcc
Q psy8073 4 LQLEELFKTCDK--KGTGQIGPEEFRELCTGFDIQPT--DSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDAR--RLKS 77 (593)
Q Consensus 4 ~~l~~~F~~~D~--d~~G~I~~~el~~~l~~l~l~~~--e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~--~~~~ 77 (593)
++|+++|..||. |++|+|+..||+.+|+.+|++++ ++..++. .|.+++|.|+|++|+.++..+...... ....
T Consensus 9 ~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~~~-~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l 87 (159)
T 3i5g_C 9 EEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGG-TKKMGEKAYKLEEILPIYEEMSSKDTGTAADEF 87 (159)
T ss_dssp HHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTTTC-CSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHH
T ss_pred HHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHc-ccccCCCcccHHHHHHHHHHhhcccccchHHHH
Confidence 478999999995 89999999999999999997655 4455544 477889999999999998775432111 1112
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCC-CCchhhhhHHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSN-CPEIVTHFEGALSSLLD 152 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~-~p~ll~~~E~~i~~~~~ 152 (593)
..+|...+.. ..+......+++++..+|... +.+++..++..+ +.+ +..+..+|++|++.+++
T Consensus 88 ~~aF~~fD~d---~~G~I~~~el~~~l~~~g~~l-------s~~e~~~l~~~~--D~~~d~dG~I~~~EF~~~m~~ 151 (159)
T 3i5g_C 88 MEAFKTFDRE---GQGLISSAEIRNVLKMLGERI-------TEDQCNDIFTFC--DIREDIDGNIKYEDLMKKVMA 151 (159)
T ss_dssp HHHHHHHCTT---SSSEECHHHHHHHHHHSSSCC-------CHHHHHHHHHHT--TCCCCSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CcCCCCCCeEeHHHHHHHHHC
Confidence 2233333332 233344556999999999876 889999999988 432 34577899999998875
No 219
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=99.20 E-value=1.5e-11 Score=110.96 Aligned_cols=135 Identities=12% Similarity=0.251 Sum_probs=102.0
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
++|+++|..||+|++|+|+..||..+++.+|. +..++..++..+|.+++|.|+|.+|+..+...............++
T Consensus 10 ~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~aF 89 (148)
T 2lmt_A 10 AEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAF 89 (148)
T ss_dssp HHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHHHHHHTTSTTEEEHHHHHHHHHHTTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHHHhcccCCCCcccHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 57899999999999999999999999997775 4556779999999999999999999998876543332222222233
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
...+.. ..+......++.++..+|... +.+++..++..+ +.+ ..+..+|++|+..++
T Consensus 90 ~~~D~d---~~G~I~~~El~~~l~~~g~~~-------~~~e~~~l~~~~--D~d-~dG~I~~~EF~~~m~ 146 (148)
T 2lmt_A 90 KIFDRD---GDGFISPAELRFVMINLGEKV-------TDEEIDEMIREA--DFD-GDGMINYEEFVWMIS 146 (148)
T ss_dssp HHHHSS---CSSEECHHHHHHHHHHHTCCC-------CHHHHHHHHHHH--CCS-CCSSEEHHHHHHHHT
T ss_pred HHHCCC---CcCcCcHHHHHHHHHHcCccc-------cHHHHHHHHHHh--CCC-CCCeEeHHHHHHHHh
Confidence 333322 223334456899999999876 889999999999 554 356679999998664
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.18 E-value=3.8e-11 Score=121.81 Aligned_cols=97 Identities=20% Similarity=0.177 Sum_probs=78.4
Q ss_pred chhhhhhhHhhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccC-HHHHHH
Q psy8073 451 QERFRSMTKNYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCID-REVGEK 528 (593)
Q Consensus 451 ~e~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~-~~~~~~ 528 (593)
++++..+.+.+++++|++|+|||++++. ++..+..|+..+.. .++|+|+|+||+||.+.. .+. ......
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~------~v~~~~~~~~ 136 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEE------EKKELERWIS 136 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH------HHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCcc------ccHHHHHHHH
Confidence 7888888889999999999999999986 88888889887654 458999999999996531 111 234455
Q ss_pred HHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q psy8073 529 LAQQYGAIFMETSSKSGDNILDALIALS 556 (593)
Q Consensus 529 l~~~~~~~~~e~Sa~~g~gi~~l~~~L~ 556 (593)
++...+..++++||++|.|+++++..+.
T Consensus 137 ~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 137 IYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 5666788999999999999999997653
No 221
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=99.18 E-value=5.1e-11 Score=102.30 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=64.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDAR 73 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~ 73 (593)
..+|+++|..+|+ ++|+|+.++++.+|..+|++.+++..||..+|.|++|+|+|+||+.+|+.+.....+
T Consensus 32 ~~~y~~iF~~lD~-~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~~~G 101 (121)
T 3fia_A 32 RAKHDQQFHSLKP-ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQG 101 (121)
T ss_dssp HHHHHHHHHHTCC-BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC-CCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHHHcC
Confidence 4689999999999 899999999999999999999999999999999999999999999999987654433
No 222
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=2.3e-11 Score=102.12 Aligned_cols=62 Identities=29% Similarity=0.491 Sum_probs=57.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
..+++++|..||+|++|+|+..||+.+|+.+| ++..+++.+|..+|.|++|.|+|+||+.+|
T Consensus 35 ~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m 98 (100)
T 2lv7_A 35 LEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLL 98 (100)
T ss_dssp HHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHh
Confidence 35799999999999999999999999999777 567788999999999999999999999876
No 223
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=99.16 E-value=1.8e-11 Score=111.35 Aligned_cols=131 Identities=15% Similarity=0.269 Sum_probs=97.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHH--HHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTD--SDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e--~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+|+++|..||+|++|+|+..||+.+|+.+|.++++ +..++ .+++|.|+|.+|+.++........+......+|
T Consensus 16 ~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~----~~~~~~i~f~ef~~~~~~~~~~~~~~~~l~~aF 91 (153)
T 3i5g_B 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML----KECPGQLNFTAFLTLFGEKVSGTDPEDALRNAF 91 (153)
T ss_dssp HHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH----HTSSSCCCSHHHHHTTTTTTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH----HhccCCccHHHHHHHHHhhhcccccHHHHHHHH
Confidence 578999999999999999999999999999976664 33444 356788999999999876554433333333444
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+... .+......++.++..+|... +.+++..++..+ +.+ .+..+|++|+..+.+
T Consensus 92 ~~fD~d~---~G~I~~~el~~~l~~~g~~l-------s~~ei~~~~~~~--D~~--dG~I~y~EF~~~m~~ 148 (153)
T 3i5g_B 92 SMFDEDG---QGFIPEDYLKDLLENMGDNF-------SKEEIKNVWKDA--PLK--NKQFNYNKMVDIKGK 148 (153)
T ss_dssp HTTCSSC---SSCCCHHHHHHHHHSSSSCC-------CHHHHHHHHTTC--CEE--TTEECHHHHHHHHHC
T ss_pred hccccCC---CCeEeHHHHHHHHHHcCCcC-------CHHHHHHHHHHh--CCC--cCEEcHHHHHHHhcC
Confidence 4444432 23344556999999999876 889999999888 443 577899999986643
No 224
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=99.15 E-value=7.5e-11 Score=104.95 Aligned_cols=134 Identities=15% Similarity=0.245 Sum_probs=100.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..+++.+|..+|.+++|+|+..++..++..+| ++..++..+|..+|.|++|.|+|+||+.++................
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 84 (142)
T 2bl0_C 5 VSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQA 84 (142)
T ss_dssp HHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCeeeHHHHHHHHHHHhcCCChHHHHHHH
Confidence 35789999999999999999999999999666 5566788999999999999999999999988754322222222222
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
+...+.. ..+......|..++..+|... +.+++..++..+ + +..+..+|++|+..+
T Consensus 85 F~~~D~d---~~G~i~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d--~~dg~i~~~eF~~~~ 140 (142)
T 2bl0_C 85 FRTFDPE---GTGYIPKAALQDALLNLGDRL-------KPHEFAEFLGIT--E--TEKGQIRYDNFINTM 140 (142)
T ss_dssp HHHTCCS---SCSCEEHHHHHHHHHHSSSCC-------CHHHHHHHHHHH--C--CSSSEECSHHHHTTT
T ss_pred HHHHCCC---CCCcCcHHHHHHHHHHcCCCC-------CHHHHHHHHHHh--C--CCCCcEeHHHHHHHH
Confidence 3323222 223334456888888888765 788999999999 5 456678899988643
No 225
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=99.14 E-value=2.4e-10 Score=104.84 Aligned_cols=137 Identities=14% Similarity=0.259 Sum_probs=101.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..+++.+|..+|.|++|+|+..|+..++..+|. +..++..+|..+|.|++|.|+|+||+.++................
T Consensus 27 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 106 (169)
T 3qrx_A 27 KQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKA 106 (169)
T ss_dssp HHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHhcccCcHHHHHHH
Confidence 357899999999999999999999999998874 567788999999999999999999999987654332222222222
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
+...+... .+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.+
T Consensus 107 F~~~D~d~---~G~i~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--D~~-~dg~i~~~eF~~~~~~ 165 (169)
T 3qrx_A 107 FRLFDDDN---SGTITIKDLRRVAKELGENL-------TEEELQEMIAEA--DRN-DDNEIDEDEFIRIMKK 165 (169)
T ss_dssp HHHHCTTC---SSSBCHHHHHHHHHHTTCCC-------CHHHHHHHHHHH--CCS-SSSCBCHHHHHHHHC-
T ss_pred HHHhCCCC---CCcCCHHHHHHHHHHcCCCC-------CHHHHHHHHHHh--CCC-CCCCEeHHHHHHHHHh
Confidence 33232222 22233456888998888765 888999999999 554 3556789999886643
No 226
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.13 E-value=2.6e-10 Score=128.97 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=82.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcC--------ccccC--CC------CccceeeEE--EEEEEC-----CeeEEEEEE
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKE--------VFLNK--LG------STLGVDFQM--KTIRVD-----ERNVALQLW 446 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~--------~~~~~--~~------~t~g~~~~~--~~~~~~-----~~~~~~~l~ 446 (593)
.+--+|+|+|+.++|||||..+|+.. .+... +. ..-|.+... ..+.+. .+++.+.|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 34458999999999999999998632 11000 00 001222222 222222 235889999
Q ss_pred ecCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 447 DTaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
||||+..|..-....++-+|++|+|+|+..+...+...-|...... ++|+|+|+||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 9999999988888999999999999999998877776666655443 589999999999753
No 227
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.12 E-value=4.7e-11 Score=124.33 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=54.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCe---------------eEEEEEEecCCchh
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER---------------NVALQLWDTAGQER 453 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~---------------~~~~~l~DTaG~e~ 453 (593)
...+++|+|+|.||||||||+|+|++..+.....++.+.+.....+.+.+. ...++||||||+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 456789999999999999999999988542222222223444445555442 23599999999776
Q ss_pred hhh-------hhHhhccCCCEEEEEEeCCChh
Q psy8073 454 FRS-------MTKNYFRRADGVMLLYDVTNER 478 (593)
Q Consensus 454 ~~~-------~~~~~~~~ad~vi~v~D~~~~~ 478 (593)
+.+ ....+++.||++|+|+|+++..
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC----
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 533 4567889999999999998643
No 228
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=99.12 E-value=2.4e-10 Score=103.77 Aligned_cols=136 Identities=10% Similarity=0.115 Sum_probs=101.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..+++.+|..+|.+++|+|+..|+..+++.+| ++..++..+|..+|.+++|.|+|+||+.++................
T Consensus 22 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 101 (161)
T 3fwb_A 22 KQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRA 101 (161)
T ss_dssp HHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 35789999999999999999999999999877 5566788999999999999999999999987654332222222222
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
+...+.. ..+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 102 F~~~D~d---~~G~i~~~el~~~l~~~~~~~-------~~~~~~~~~~~~--d~~-~~g~i~~~eF~~~~~ 159 (161)
T 3fwb_A 102 FQLFDDD---HTGKISIKNLRRVAKELGETL-------TDEELRAMIEEF--DLD-GDGEINENEFIAICT 159 (161)
T ss_dssp HHHHCTT---CSSEECHHHHHHHHHHTTCCC-------CHHHHHHHHHTT--CSS-SSSSEEHHHHHHHHH
T ss_pred HHHHcCC---CCCeEeHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHh
Confidence 2222222 223334456889998888765 888999999988 444 345678999998664
No 229
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=99.12 E-value=2.4e-10 Score=101.94 Aligned_cols=134 Identities=14% Similarity=0.201 Sum_probs=100.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..+++.+|..+|.+++|+|+..|+..++..+| ++..++..+|..+|.+++|.|+|+||+.++................
T Consensus 10 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 89 (147)
T 4ds7_A 10 IAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEA 89 (147)
T ss_dssp HHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHhccCCCcHHHHHHH
Confidence 35788999999999999999999999999776 5566788999999999999999999999987654332222222222
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
+...+.. ..+......|..++..+|... +.+++..++..+ + +..+..+|++|+..+
T Consensus 90 F~~~D~d---~~G~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~--d--~~dg~i~~~eF~~~l 145 (147)
T 4ds7_A 90 FKVFDKN---GDGLISAAELKHVLTSIGEKL-------TDAEVDEMLREV--S--DGSGEINIKQFAALL 145 (147)
T ss_dssp HHHHCTT---CSSEECHHHHHHHHHHTTCCC-------CHHHHHHHHHHH--S--SSCSSEEHHHHHHHT
T ss_pred HHHhCCC---CCCeECHHHHHHHHHHcCCCC-------CHHHHHHHHHHh--c--CCCCcCcHHHHHHHH
Confidence 3222222 223334456888998888765 888999999999 4 456778999998754
No 230
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=7.6e-10 Score=115.50 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHhcCcc-ccCCCCccceeeEEEEEEECCe---------------eEEEEEEecCCc
Q psy8073 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVF-LNKLGSTLGVDFQMKTIRVDER---------------NVALQLWDTAGQ 451 (593)
Q Consensus 388 ~~~~~~kI~ivG~~nvGKSSLln~l~~~~~-~~~~~~t~g~~~~~~~~~~~~~---------------~~~~~l~DTaG~ 451 (593)
....+.+|+|+|+||||||||+|+|++..+ .....++.+.+.....+.+.+. +..+.+|||||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 345678999999999999999999998653 2222222224445555666542 145899999994
Q ss_pred h-------hhhhhhHhhccCCCEEEEEEeCCC
Q psy8073 452 E-------RFRSMTKNYFRRADGVMLLYDVTN 476 (593)
Q Consensus 452 e-------~~~~~~~~~~~~ad~vi~v~D~~~ 476 (593)
. .+.......++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 233345567789999999999864
No 231
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=99.06 E-value=3.1e-10 Score=93.38 Aligned_cols=65 Identities=38% Similarity=0.801 Sum_probs=61.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++.+|..||.|++|+|+..||..+++.+|++..++..+|..+|.|++|.|+|+||+.++..+
T Consensus 26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~~~ 90 (91)
T 2pmy_A 26 LARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFLGS 90 (91)
T ss_dssp HHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEECHHHHTHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999998764
No 232
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=99.05 E-value=4.9e-10 Score=101.51 Aligned_cols=135 Identities=15% Similarity=0.247 Sum_probs=98.1
Q ss_pred HHHHHHHhHhC-CCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhh----hhhhc
Q psy8073 4 LQLEELFKTCD-KKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSD----ARRLK 76 (593)
Q Consensus 4 ~~l~~~F~~~D-~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~----~~~~~ 76 (593)
.+++.+|..+| .+++|+|+..|+..+++.+| ++..++..+|..+|.|++|.|+|+||+.++....... .....
T Consensus 13 ~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 92 (158)
T 2jnf_A 13 KLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQE 92 (158)
T ss_dssp HHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHHHHCTTCCSEECHHHHHHHHHHHCCCCCCTTTTSST
T ss_pred HHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccccchhhHHHH
Confidence 47899999999 99999999999999999877 4566788999999999999999999999987654221 11111
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
....+...+ ....+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 93 ~~~~F~~~D---~d~~G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dg~i~~~eF~~~~~ 154 (158)
T 2jnf_A 93 LREAFRLYD---KEGNGYISTDVMREILAELDETL-------SSEDLDAMIDEI--DAD-GSGTVDFEEFMGVMT 154 (158)
T ss_dssp HHHHHHHHC---SSSSSSEEHHHHHHHHHHHCTTC-------CHHHHHHHHHHH--CSS-CCSEECSHHHHHHTS
T ss_pred HHHHHHHhC---CCCCCeEcHHHHHHHHHHhCCcC-------CHHHHHHHHHHh--CCC-CCCcEeHHHHHHHHh
Confidence 111111111 12223334456888888888765 788999999999 544 345678999987653
No 233
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=99.04 E-value=8e-10 Score=102.41 Aligned_cols=137 Identities=12% Similarity=0.259 Sum_probs=99.3
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++.+|..+|.|++|+|+..|+..++..+|. +..++..+|..+|.|++|.|+|+||+.++................+
T Consensus 11 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~F 90 (179)
T 2f2o_A 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAF 90 (179)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHccCcccHHHHHHHH
Confidence 57899999999999999999999999998774 5667889999999999999999999999876543222222222222
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLDD 153 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~~ 153 (593)
...+.. ..+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+...
T Consensus 91 ~~~D~d---~~G~I~~~E~~~~l~~~g~~~-------~~~~~~~~~~~~--D~~-~dg~i~~~eF~~~~~~~ 149 (179)
T 2f2o_A 91 RVFDKD---GNGYISAAELRHVMTNLGEKL-------TDEEVDEMIREA--DID-GDGQVNYEEFVQMMTAK 149 (179)
T ss_dssp HHHCTT---CSSEECHHHHHHHHHHC--CC-------CHHHHHHHHHHH--CTT-CSSSEEHHHHHHHSCC-
T ss_pred HHhCCC---CCCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHc--CCC-CCCcCcHHHHHHHHHHc
Confidence 222222 122334456888888888765 788999999999 544 34567899999877653
No 234
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=99.03 E-value=4.5e-10 Score=104.72 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=94.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCCC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAGA 83 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~ 83 (593)
.+++++|..+|.|++|+|+..|+..++..+|+++.++..+|..+|.|++|.|+|+||+.++....... .......+..
T Consensus 39 ~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~~~~~--~~~~~~~F~~ 116 (180)
T 3mse_B 39 KYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGCYRWKNIE--STFLKAAFNK 116 (180)
T ss_dssp HHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCSEECHHHHHHHHSCCTTC----CHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhcccCC--HHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999998875432111 0111112222
Q ss_pred CCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCC-------chhhhhHHHHHHHHH
Q psy8073 84 MSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCP-------EIVTHFEGALSSLLD 152 (593)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p-------~ll~~~E~~i~~~~~ 152 (593)
.+... .+......|..++. +... +.+++..++..+ +.+.. .+..+|++|+..+.+
T Consensus 117 ~D~d~---~G~I~~~El~~~l~--~~~~-------~~~~~~~~~~~~--d~~~d~~~~~~~~G~i~~~eF~~~l~~ 178 (180)
T 3mse_B 117 IDKDE---DGYISKSDIVSLVH--DKVL-------DNNDIDNFFLSV--HSIKKGIPREHIINKISFQEFKDYMLS 178 (180)
T ss_dssp HCTTC---SSCBCHHHHHHHTT--TSSC-------CHHHHHHHHHHH--HTC---------CCCBCHHHHHHHHHT
T ss_pred HCCCC---CCCCCHHHHHHHHc--CCCC-------CHHHHHHHHHHh--hhccCcccccccCCeeeHHHHHHHHHh
Confidence 22221 22223345777765 3322 788899999999 43322 267899999987653
No 235
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=99.03 E-value=1.3e-10 Score=104.18 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=95.6
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHh-CCCCCCcccHHHHHHHHHHHh-----hhhhhhhc
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADL-DHDGDGKVSLEDFAYGFREFL-----NSDARRLK 76 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~-D~d~~G~i~~~eF~~~~~~~~-----~~~~~~~~ 76 (593)
+++.+|..+|.|++|+|+..|+..+++.+|. +..++..+|..+ |.|++|.|+|+||+.++.... ........
T Consensus 5 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 84 (148)
T 1m45_A 5 ANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTED 84 (148)
T ss_dssp CCTTCHHHHCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHTHHHHHGGGCCCTHH
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCeEcHHHHHHHHHHHHhhccccccccHHH
Confidence 5678999999999999999999999998874 566788999999 999999999999999987752 11111111
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
....+...+.. ..+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 85 ~~~~F~~~D~d---~~G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d~d-~dg~i~~~eF~~~~~ 146 (148)
T 1m45_A 85 FVKAFQVFDKE---STGKVSVGDLRYMLTGLGEKL-------TDAEVDELLKGV--EVD-SNGEIDYKKFIEDVL 146 (148)
T ss_dssp HHHHHHTTCSS---SSSEEEHHHHHHHHHHSTTCC-------CHHHHHHHHTTC--CCC-TTSEEEHHHHHHHHH
T ss_pred HHHHHHHhCCC---CCCcCCHHHHHHHHHHcCCCC-------CHHHHHHHHHHh--CCC-CCCeEeHHHHHHHHh
Confidence 12223333222 223344556889998888765 788999999888 443 355678999998764
No 236
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=99.03 E-value=6.1e-10 Score=101.13 Aligned_cols=135 Identities=13% Similarity=0.208 Sum_probs=96.3
Q ss_pred HHHHHHHhHhCCCC-CCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhh---hhhhhhcc
Q psy8073 4 LQLEELFKTCDKKG-TGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN---SDARRLKS 77 (593)
Q Consensus 4 ~~l~~~F~~~D~d~-~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~---~~~~~~~~ 77 (593)
.+++.+|..+|.++ +|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|+||+.++..... ........
T Consensus 18 ~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 97 (161)
T 1dtl_A 18 NEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEEL 97 (161)
T ss_dssp HHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHC-----CHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhcccccchHHHHH
Confidence 57899999999999 99999999999999877 56778889999999999999999999999877643 11111111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
...+...+.. ..+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 98 ~~~F~~~D~d---~~G~i~~~El~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dg~i~~~eF~~~~~ 158 (161)
T 1dtl_A 98 SDLFRMFDKN---ADGYIDLEELKIMLQATGETI-------TEDDIEELMKDG--DKN-NDGRIDYDEFLEFMK 158 (161)
T ss_dssp HHHHHHHCTT---CSSEEEHHHHGGGGTTC--CC-------CHHHHHHHHHHH--CTT-SSSEEEHHHHHHHHH
T ss_pred HHHHHHhCCC---CCCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCcEeHHHHHHHHH
Confidence 1222222222 122233445777777777654 788999999999 543 345678999987664
No 237
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=99.02 E-value=9.5e-10 Score=99.86 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=99.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh---hhhccc
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA---RRLKSN 78 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~---~~~~~~ 78 (593)
.+++.+|..+|.+++|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|+||+..+........ ......
T Consensus 20 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 99 (162)
T 1top_A 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELA 99 (162)
T ss_dssp HHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHHhccccccccHHHHH
Confidence 5789999999999999999999999999777 45667889999999999999999999999876543221 111112
Q ss_pred ccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 79 VNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
..+...+... .+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 100 ~~F~~~D~d~---~G~I~~~e~~~~l~~~g~~~-------~~~~~~~~~~~~--d~~-~dg~i~~~eF~~~~~ 159 (162)
T 1top_A 100 NCFRIFDKNA---DGFIDIEELGEILRATGEHV-------TEEDIEDLMKDS--DKN-NDGRIDFDEFLKMME 159 (162)
T ss_dssp HHHHHHCTTC---SSCBCHHHHHHHHHTTTCCC-------CHHHHHHHHHHH--CTT-CSSSBCHHHHHHHHH
T ss_pred HHHHHhCCCC---CCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHh
Confidence 2232222222 22233456888888888655 788999999999 554 345678999988664
No 238
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=99.01 E-value=4.5e-10 Score=94.15 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhC-CCCC-CcccHHHHHHHHHc-C----C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCD-KKGT-GQIGPEEFRELCTG-F----D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~-G~I~~~el~~~l~~-l----~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
-.+++++|+.|| +||+ |+|+..||+.+++. + | +++.+++.||..+|.|+||.|+|+||+.++....
T Consensus 9 i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~~ 83 (101)
T 3nso_A 9 VAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLC 83 (101)
T ss_dssp HHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 367999999997 8997 99999999999984 3 3 5677899999999999999999999999987754
No 239
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=99.01 E-value=1.4e-09 Score=102.23 Aligned_cols=137 Identities=12% Similarity=0.225 Sum_probs=99.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHH-----HHHHcCCCCHH-------HHHHHHHHhCCCCCCcccHHHHHHHHHHHhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFR-----ELCTGFDIQPT-------DSDAIFADLDHDGDGKVSLEDFAYGFREFLNS 70 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~-----~~l~~l~l~~~-------e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~ 70 (593)
..+++.+|..+|.|++|+|+..|+. .+++.+|.+++ ++..+|..+|.|++|.|+|+||+.++......
T Consensus 19 ~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~~ 98 (195)
T 1qv0_A 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATS 98 (195)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCCCceEcHHHHHHHHHHHHhh
Confidence 3578999999999999999999999 78888998766 36789999999999999999999998765432
Q ss_pred hhhh---hc---cc----ccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchh
Q psy8073 71 DARR---LK---SN----VNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIV 140 (593)
Q Consensus 71 ~~~~---~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll 140 (593)
.... .. .. ..+...+.. ..+......|..++..+|... +.+++..++..+ +.+ ..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~F~~~D~d---~~G~I~~~El~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dg~ 165 (195)
T 1qv0_A 99 ELKKWARNEPTLIREWGDAVFDIFDKD---GSGTITLDEWKAYGKISGISP-------SQEDCEATFRHC--DLD-NAGD 165 (195)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTC-------CEECHHHHHHHHHHHSSCC-------CHHHHHHHHHHS--CCC-TTSC
T ss_pred hhhcccccHHHHHHHHHHHHHHHhcCC---CCCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCc
Confidence 1110 00 00 223323222 223334456888898888655 788999999998 543 3556
Q ss_pred hhhHHHHHHHHH
Q psy8073 141 THFEGALSSLLD 152 (593)
Q Consensus 141 ~~~E~~i~~~~~ 152 (593)
.+|++|+..+..
T Consensus 166 i~~~eF~~~~~~ 177 (195)
T 1qv0_A 166 LDVDEMTRQHLG 177 (195)
T ss_dssp EEHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 789999987764
No 240
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=99.00 E-value=8.4e-10 Score=89.14 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=60.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++.+|..||+|++|+|+..|+..+++.+| ++..++..+|..+|.|++|.|+|+||+.++...+
T Consensus 13 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 80 (85)
T 2ktg_A 13 QQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEYG 80 (85)
T ss_dssp HHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSSCSEEEHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence 45789999999999999999999999999887 5677888999999999999999999999998764
No 241
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=98.99 E-value=1.6e-09 Score=101.23 Aligned_cols=137 Identities=9% Similarity=0.161 Sum_probs=99.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHH-----HHHHcCCCCHHH-------HHHHHHHhCCCCCCcccHHHHHHHHHHHhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFR-----ELCTGFDIQPTD-------SDAIFADLDHDGDGKVSLEDFAYGFREFLNS 70 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~-----~~l~~l~l~~~e-------~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~ 70 (593)
..+++.+|..+|.|++|+|+..|+. .+++.+|.+++. +..+|..+|.|++|.|+|+||+.++......
T Consensus 15 ~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~~ 94 (191)
T 1uhk_A 15 IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATD 94 (191)
T ss_dssp HHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCCTTCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhCcCCCCcCcHHHHHHHHHHHhcc
Confidence 3578999999999999999999999 889999987653 5689999999999999999999998765432
Q ss_pred hhhh---h--c-cc----ccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchh
Q psy8073 71 DARR---L--K-SN----VNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIV 140 (593)
Q Consensus 71 ~~~~---~--~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll 140 (593)
.... . . .. ..+...+.. ..+......|..++..+|... +.+++..++..+ +.+ ..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~F~~~D~d---~~G~Is~~El~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dG~ 161 (191)
T 1uhk_A 95 ELEKYAKNEPTLIRIWGDALFDIVDKD---QNGAITLDEWKAYTKAAGIIQ-------SSEDCEETFRVC--DID-ESGQ 161 (191)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCTT---CSSEECHHHHHHHHHHHTSCC-------SHHHHHHHHHHS--CCC-TTSC
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCC---CCCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCc
Confidence 1110 0 0 00 222222222 223334456888888888655 788999999998 443 3556
Q ss_pred hhhHHHHHHHHH
Q psy8073 141 THFEGALSSLLD 152 (593)
Q Consensus 141 ~~~E~~i~~~~~ 152 (593)
.+|++|+..+..
T Consensus 162 i~~~eF~~~~~~ 173 (191)
T 1uhk_A 162 LDVDEMTRQHLG 173 (191)
T ss_dssp EEHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 789999987764
No 242
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=98.99 E-value=5.9e-10 Score=85.46 Aligned_cols=62 Identities=26% Similarity=0.582 Sum_probs=57.0
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+++.+|..+|++++|+|+..++..++..+| ++..++..+|..+|.|++|.|+|+||+.++..
T Consensus 2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 65 (67)
T 1tiz_A 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 578999999999999999999999999776 66778889999999999999999999998864
No 243
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=98.99 E-value=9.8e-10 Score=92.66 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=58.1
Q ss_pred HHHHHHHHhHhC-CCCC-CcccHHHHHHHHHc-CC------CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCD-KKGT-GQIGPEEFRELCTG-FD------IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~-G~I~~~el~~~l~~-l~------l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++++|+.|| +||+ |+|+..||+.+|+. +| ++..+++.||..+|.|+||.|+|+||+.++..+.
T Consensus 12 ~~~l~~aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~~ 86 (104)
T 3zwh_A 12 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSIA 86 (104)
T ss_dssp HHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHH
Confidence 368999999997 7885 89999999999984 54 4688899999999999999999999999987654
No 244
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=98.98 E-value=1.2e-09 Score=91.06 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=58.1
Q ss_pred HHHHHHHHhHhC-CCCCC-cccHHHHHHHHHc-CC------CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCD-KKGTG-QIGPEEFRELCTG-FD------IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-l~------l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
-.+++++|+.|| +||+| +|+..||+.+++. +| .+..+++.++..+|.|+||.|+|+||+.++..+.
T Consensus 10 i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~ 84 (98)
T 3n22_A 10 LAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALIT 84 (98)
T ss_dssp HHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 368999999997 89995 9999999999984 42 5678899999999999999999999999987653
No 245
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=98.97 E-value=1.2e-09 Score=90.20 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=57.7
Q ss_pred HHHHHHHHhHhC-CCCC-CcccHHHHHHHHHc-CC------CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCD-KKGT-GQIGPEEFRELCTG-FD------IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~-G~I~~~el~~~l~~-l~------l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
-.+++++|+.|| +||+ |+|+..||+.+++. +| .++.+++.++..+|.|+||.|+|+||+.++....
T Consensus 9 ~~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~ 83 (93)
T 4eto_A 9 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIA 83 (93)
T ss_dssp HHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHH
Confidence 368999999998 6885 89999999999984 54 3677899999999999999999999999987653
No 246
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=98.97 E-value=2.3e-09 Score=95.67 Aligned_cols=133 Identities=11% Similarity=0.217 Sum_probs=95.7
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHh---CCCCCCcccHHHHHHHHHHHh--hhhhhhhc
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADL---DHDGDGKVSLEDFAYGFREFL--NSDARRLK 76 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~---D~d~~G~i~~~eF~~~~~~~~--~~~~~~~~ 76 (593)
.+++.+|..+|++++|+|+..++..++..+|. +..++..+|..+ |.++ |.|+|+||+..+.... ........
T Consensus 8 ~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~-g~i~~~eF~~~~~~~~~~~~~~~~~~ 86 (149)
T 2mys_C 8 DDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA-AAITFEEFLPMLQAAANNKDQGTFED 86 (149)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccC-CcCcHHHHHHHHHHHhccCCcchHHH
Confidence 57899999999999999999999999997774 566778999999 9999 9999999999987752 11111111
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
....+...+.. ..+......|..++..+|... +.+++..++.. -. +..+..+|++|+..+.
T Consensus 87 ~~~~F~~~D~d---~~G~i~~~el~~~l~~~g~~~-------~~~~~~~~~~~-d~---~~dg~i~~~eF~~~~~ 147 (149)
T 2mys_C 87 FVEGLRVFDKE---GNGTVMGAELRHVLATLGEKM-------TEEEVEELMKG-QE---DSNGCINYEAFVKHIM 147 (149)
T ss_pred HHHHHHHhCCC---CCceEcHHHHHHHHHHhCCCC-------CHHHHHHHHhh-CC---CCCCcEeHHHHHHHHh
Confidence 12222222222 222334456888888888755 78889999876 22 2356689999998765
No 247
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=98.96 E-value=6.8e-10 Score=86.24 Aligned_cols=64 Identities=30% Similarity=0.523 Sum_probs=59.0
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
+.++++.+|..+|++++|+|+..++..++..+| ++..++..+|..+|.|++|.|+|+||+.++.
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 69 (71)
T 2b1u_A 4 GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARMLA 69 (71)
T ss_dssp THHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHHT
T ss_pred cHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 467899999999999999999999999999887 6777889999999999999999999998863
No 248
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=98.96 E-value=2e-10 Score=103.21 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=97.9
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHHhhhhhh--hhcc
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHD--GDGKVSLEDFAYGFREFLNSDAR--RLKS 77 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d--~~G~i~~~eF~~~~~~~~~~~~~--~~~~ 77 (593)
.+++.+|..+|.+++|+|+..|+..+++.+|. +..++..+|..+|.| ++|.|+|+||+.++........+ ....
T Consensus 10 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l 89 (151)
T 1w7j_B 10 EEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDY 89 (151)
T ss_dssp -CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCcCCCCcCcHHHHHHHHHHHhccCCCCcHHHH
Confidence 46889999999999999999999999998874 566788999999999 99999999999998775321111 1111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
...+...+. ...+......|..++..+|... +.+++..++..+ + +..+..+|++|+..+.
T Consensus 90 ~~~F~~~D~---d~~G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d--~~dg~i~~~eF~~~~~ 149 (151)
T 1w7j_B 90 LEGFRVFDK---EGNGKVMGAELRHVLTTLGEKM-------TEEEVETVLAGH--E--DSNGCINYEAFLKHIL 149 (151)
T ss_dssp HHHHHTTCT---TSSSEEEHHHHHHHHHHSSSCC-------CHHHHHHHHTTC--C--CTTSEEEHHHHHHHTC
T ss_pred HHHHHHhCC---CCCCcCcHHHHHHHHHHcCCCC-------CHHHHHHHHHhc--c--CCCCeEeHHHHHHHHh
Confidence 112222222 2233344556889998888765 788999999888 4 4567789999988654
No 249
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=98.96 E-value=2e-09 Score=88.13 Aligned_cols=66 Identities=23% Similarity=0.420 Sum_probs=59.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++.+|..||++++|+|+..+|..+++.+| ++..++..+|..+|.|++|.|+|+||+.++...+
T Consensus 19 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~~~~ 86 (90)
T 1avs_A 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM 86 (90)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHHh
Confidence 35789999999999999999999999999877 5577888999999999999999999999987654
No 250
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=98.96 E-value=1.6e-09 Score=89.65 Aligned_cols=64 Identities=31% Similarity=0.579 Sum_probs=58.8
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
+.++++.+|..||+|++|+|+..||..+++.+| ++..+++.+|..+|.|++|.|+|+||+.++.
T Consensus 27 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 92 (94)
T 2kz2_A 27 SEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 92 (94)
T ss_dssp CHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 367899999999999999999999999999776 6777889999999999999999999998874
No 251
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=98.96 E-value=9.4e-10 Score=98.67 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=97.4
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhh----hcc
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARR----LKS 77 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~----~~~ 77 (593)
.+++.+|..+|.+++|+|+..|+..++..+| ++..++..+|..+|.+++|.|+|+||+.++.......... ...
T Consensus 11 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 90 (153)
T 3ox6_A 11 EELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKEL 90 (153)
T ss_dssp HHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHHhhccccccccHHHH
Confidence 5788999999999999999999999999776 5566778999999999999999999999987654322111 111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHh-hhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAG-IGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
...+...+... .+......|..++.. +|... +.+++..++..+ +.+ ..+..+|++|+..+
T Consensus 91 ~~~F~~~D~d~---~G~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~~--d~~-~dg~i~~~eF~~~~ 151 (153)
T 3ox6_A 91 RDAFREFDTNG---DGEISTSELREAMRALLGHQV-------GHRDIEEIIRDV--DLN-GDGRVDFEEFVRMM 151 (153)
T ss_dssp HHHHHHHCTTC---SSSBCHHHHHHHHHHHHSSCC-------CHHHHHHHHHHH--CSS-SSSSBCHHHHHHHT
T ss_pred HHHHHHhCCCC---CCcCcHHHHHHHHHHHhcCCC-------CHHHHHHHHHHh--CCC-CCCeEeHHHHHHHH
Confidence 12222222221 222334568888877 67655 788999999999 544 35567899998754
No 252
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=98.95 E-value=9.8e-10 Score=86.86 Aligned_cols=66 Identities=20% Similarity=0.391 Sum_probs=59.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++.+|..||++++|+|+..++..+++.+|. +..++..+|..+|.|++|.|+|+||+.++...+
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 73 (77)
T 2joj_A 6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKI 73 (77)
T ss_dssp HHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHh
Confidence 457899999999999999999999999997774 556778999999999999999999999987654
No 253
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=98.95 E-value=1.1e-09 Score=87.01 Aligned_cols=65 Identities=23% Similarity=0.445 Sum_probs=59.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD-IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~-l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
+++++.+|..+|.+++|+|+..|+..+++.+| +++.++..+|..+|.|++|.|+|+||+.++...
T Consensus 2 ~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~ 67 (78)
T 1k9u_A 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNAN 67 (78)
T ss_dssp -CHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHC
T ss_pred hHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHC
Confidence 57899999999999999999999999999665 778889999999999999999999999998764
No 254
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=98.95 E-value=2.1e-09 Score=87.08 Aligned_cols=65 Identities=28% Similarity=0.511 Sum_probs=59.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD-IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~-l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++.+|..+|+|++|+|+..|+..+++.+| ++..+++.+|..+|.|++|.|+|+||+.++...
T Consensus 10 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 75 (86)
T 2opo_A 10 IADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFARAN 75 (86)
T ss_dssp HHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHC
Confidence 46789999999999999999999999999887 667788999999999999999999999998764
No 255
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.95 E-value=8.1e-10 Score=98.33 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=97.3
Q ss_pred CCHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh-hhhhhhhcc
Q psy8073 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL-NSDARRLKS 77 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~-~~~~~~~~~ 77 (593)
++.++++.+|..+|.|++|+|+..|+..+++.+| ++..++..+|.. +++|.|+|+||+.++.... .........
T Consensus 2 ls~~el~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~~g~i~~~eF~~~~~~~~~~~~~~~~~l 78 (145)
T 2bl0_B 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQ---LNAKEFDLATFKTVYRKPIKTPTEQSKEM 78 (145)
T ss_dssp CCHHHHHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCCCHHHHHHHHHH---HTSSEECHHHHHHHHTSCCCCGGGGHHHH
T ss_pred CCHHHHHHHHHHhCCCCcCccCHHHHHHHHHHhCCCCCHHHHHHHHHh---cCCCeEcHHHHHHHHHHHhhcCcccHHHH
Confidence 4677899999999999999999999999999877 456677788887 7899999999999886542 111111111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+...+.. ..+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.+
T Consensus 79 ~~~F~~~D~d---~~G~i~~~e~~~~l~~~g~~~-------~~~~~~~~~~~~--d~~-~dg~i~~~eF~~~~~~ 140 (145)
T 2bl0_B 79 LDAFRALDKE---GNGTIQEAELRQLLLNLGDAL-------TSSEVEELMKEV--SVS-GDGAINYESFVDMLVT 140 (145)
T ss_dssp HHHHHHHCSS---SSSEEEHHHHHHHHHHSSSCC-------CHHHHHHHHTTC--CCC-TTSEEEHHHHHHHHHH
T ss_pred HHHHHHhCCC---CCCeEcHHHHHHHHHHcCCCC-------CHHHHHHHHHHc--CCC-CCCcEeHHHHHHHHHh
Confidence 2222222221 223334456888888888755 788999999888 443 3556789999987764
No 256
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=98.95 E-value=2.5e-09 Score=98.54 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=97.7
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccc
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSN 78 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~ 78 (593)
+..+++++|..+|+|++|+|+..|+..+++.+| ++..++..+|..+|.|++|.|+|+||+.++..... ..
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~~~-------~~ 77 (172)
T 2znd_A 5 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD-------WQ 77 (172)
T ss_dssp -CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHHHH-------HH
T ss_pred chhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHH-------HH
Confidence 357899999999999999999999999999776 66778899999999999999999999998764310 01
Q ss_pred ccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 79 VNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
..+...+.. ..+......+..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+..
T Consensus 78 ~~F~~~D~d---~~G~i~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d~~-~dg~i~~~eF~~~~~~ 138 (172)
T 2znd_A 78 NVFRTYDRD---NSGMIDKNELKQALSGFGYRL-------SDQFHDILIRKF--DRQ-GRGQIAFDDFIQGCIV 138 (172)
T ss_dssp HHHHHHCTT---CSSEECHHHHHHHHHHTTCCC-------CHHHHHHHHHHH--CTT-CSSSEEHHHHHHHHHH
T ss_pred HHHHHHCCC---CCCccCHHHHHHHHHHcCCCC-------CHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHHH
Confidence 111111111 122233456888888888654 788999999999 544 3455789999987754
No 257
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=98.94 E-value=1e-09 Score=98.74 Aligned_cols=64 Identities=28% Similarity=0.595 Sum_probs=58.7
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
++++++.+|..||+|++|+|+..||+.+|..+| ++..+++.+|..+|.|+||.|+|+||+.+|.
T Consensus 81 ~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~m~ 146 (148)
T 2lmt_A 81 TEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMIS 146 (148)
T ss_dssp THHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSCCSSEEHHHHHHHHT
T ss_pred cHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 357899999999999999999999999999666 7788899999999999999999999998874
No 258
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=98.94 E-value=1.7e-09 Score=92.47 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=58.5
Q ss_pred HHHHHHHHhHhC-CCCCC-cccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCD-KKGTG-QIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
.++++++|..|| +|++| +|+..||+.+|+. +| ++..+++.|+..+|.|+||.|+|+||+.+|....
T Consensus 21 ~~~l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~~~ 95 (113)
T 2lnk_A 21 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIA 95 (113)
T ss_dssp HHHHHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHH
Confidence 468999999999 89997 9999999999984 44 4667899999999999999999999999987653
No 259
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=98.94 E-value=1.4e-09 Score=98.31 Aligned_cols=135 Identities=14% Similarity=0.244 Sum_probs=99.3
Q ss_pred HHHHHHHhHhCC--CCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhh-hhhhhccc
Q psy8073 4 LQLEELFKTCDK--KGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNS-DARRLKSN 78 (593)
Q Consensus 4 ~~l~~~F~~~D~--d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~-~~~~~~~~ 78 (593)
.+++.+|..+|. +++|+|+..||..+++.+|. +..++..+ ..+|.|++|.|+|+||+.++...... ........
T Consensus 9 ~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l-~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~l~ 87 (156)
T 1wdc_C 9 DDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAV-GGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYM 87 (156)
T ss_dssp HHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHHHHHHT-TCCSSTTSCEECHHHHHHHHHHHTTSCCCCHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHH-HhhCCCCCCeeeHHHHHHHHHHHhhccCChHHHHH
Confidence 468999999999 99999999999999998874 45567788 99999999999999999998876432 11111122
Q ss_pred ccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHH--HhcCCCCCchhhhhHHHHHHHHH
Q psy8073 79 VNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHE--LRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~--l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
..+...+.. ..+......|..++..+|... +.+++..++.. + +.+ ..+..+|++|+..+.+
T Consensus 88 ~~F~~~D~d---~~G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~~~--D~d-~dg~i~~~eF~~~~~~ 150 (156)
T 1wdc_C 88 EAFKTFDRE---GQGFISGAELRHVLTALGERL-------SDEDVDEIIKLTDL--QED-LEGNVKYEDFVKKVMA 150 (156)
T ss_dssp HHHHTTCSS---SSSEEEHHHHHHHHHHSSSCC-------CHHHHHHHHHHHTC--CCC-TTSEEEHHHHHHHHHH
T ss_pred HHHHHhCCC---CCCcCcHHHHHHHHHHcCCCC-------CHHHHHHHHHHhCC--CCC-CCCcEeHHHHHHHHhc
Confidence 223333222 223344456889998888765 88899999998 7 443 3556789999987654
No 260
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=98.94 E-value=1.2e-09 Score=105.59 Aligned_cols=128 Identities=11% Similarity=0.016 Sum_probs=97.3
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++++|..+|+|++|+|+..|+..+++.+| ++..++..+|..+|.|++|.|+|+||+.++..... ....+
T Consensus 51 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~~~~-------l~~~F 123 (220)
T 3sjs_A 51 TRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFMEL-------AYNLF 123 (220)
T ss_dssp HHHHHHHHHHCTTCCSSBCHHHHHHCCBGGGBCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHH-------HHHHH
Confidence 5788999999999999999999999999766 67778899999999999999999999998866311 11111
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+.. ..+......|..++..+|... +.+++..++..+ + +..+..+|++|+..+..
T Consensus 124 ~~~D~d---~~G~I~~~El~~~l~~~g~~~-------~~~~~~~l~~~~--d--d~dg~I~~~eF~~~~~~ 180 (220)
T 3sjs_A 124 VMNARA---RSGTLEPHEILPALQQLGFYI-------NQRTSLLLHRLF--A--RGMAFCDLNCWIAICAF 180 (220)
T ss_dssp HHHCCS---STTEECHHHHHHHHHHHTCCC-------CHHHHHHHHHHH--C----CCSEEHHHHHHHHHH
T ss_pred HHHCCC---CCCCCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--c--CCCCcCcHHHHHHHHHH
Confidence 112211 122333456889998888765 788999999999 4 45577899999986654
No 261
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=98.93 E-value=2.1e-09 Score=97.25 Aligned_cols=131 Identities=11% Similarity=0.143 Sum_probs=95.5
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++.+|..+|.+++|+|+..||..+++.+| ++..++..++. +++|.|+|+||+.++................+
T Consensus 18 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~----~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 93 (156)
T 1wdc_B 18 QEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNFTMFLSIFSDKLSGTDSEETIRNAF 93 (156)
T ss_dssp HHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHT----TSSSCCCHHHHHHHHHHHTCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH----hCCCcCcHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4689999999999999999999999999777 45556677775 46899999999999876543222222222233
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+... .+......|..++..+|... +.+++..++..+ +.+ .+..+|++|+..+.+
T Consensus 94 ~~~D~d~---~G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d~~--dg~i~~~eF~~~~~~ 150 (156)
T 1wdc_B 94 AMFDEQE---TKKLNIEYIKDLLENMGDNF-------NKDEMRMTFKEA--PVE--GGKFDYVKFTAMIKG 150 (156)
T ss_dssp HTTCTTC---CSCEEHHHHHHHHHHSSSCC-------CHHHHHHHHHHC--CEE--TTEECHHHHHHHHHT
T ss_pred HHHCcCC---CCccCHHHHHHHHHHhCCCC-------CHHHHHHHHHhc--CCC--CCEEeHHHHHHHHhc
Confidence 3333322 22334456888998888765 888999999998 555 667899999987654
No 262
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=98.93 E-value=2.9e-09 Score=87.37 Aligned_cols=66 Identities=27% Similarity=0.492 Sum_probs=60.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++.+|..||++++|+|+..+|..++..+| ++..++..+|..+|.|++|.|+|+||+.++....
T Consensus 8 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~~~ 75 (92)
T 2kn2_A 8 EEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVR 75 (92)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhcc
Confidence 46799999999999999999999999999887 6778899999999999999999999999987653
No 263
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=98.93 E-value=2.1e-09 Score=95.55 Aligned_cols=132 Identities=14% Similarity=0.216 Sum_probs=95.5
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCC--HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ--PTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~--~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++.+|..+|+|++|+|+..|+..+++.+|.+ ..++..++.. ++|.|+|+||+.++................+
T Consensus 7 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~----~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 82 (143)
T 3j04_B 7 QEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPINFTMFLTMFGEKLNGTDPEDVIRNAF 82 (143)
T ss_dssp HHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT----SSSCCCHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 578999999999999999999999999988854 4455566554 7899999999999987544332222233344
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+.... +......+..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.+
T Consensus 83 ~~~D~d~~---G~I~~~El~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dg~i~~~eF~~~~~~ 140 (143)
T 3j04_B 83 ACFDEEAS---GFIHEDHLRELLTTMGDRF-------TDEEVDEMYREA--PID-KKGNFNYVEFTRILKH 140 (143)
T ss_dssp TTSCSSSC---CCCCTTTHHHHHHTSSSCC-------CHHHHHHHHHHT--TCC-SSSCCCSTHHHHHHHS
T ss_pred HHHCCCCC---CeEcHHHHHHHHHHcCCCC-------CHHHHHHHHHHc--CCC-CCCcCcHHHHHHHHhc
Confidence 44443322 2223345889998888765 888999999998 444 4566789999987653
No 264
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=98.92 E-value=1.5e-09 Score=96.16 Aligned_cols=131 Identities=15% Similarity=0.183 Sum_probs=93.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCC--HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhh--hccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ--PTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARR--LKSN 78 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~--~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~--~~~~ 78 (593)
..+++.+|..+|.|++|+|+..|+..+++.+|.+ ..++..+|. +++|.|+|+||+.++........+. ....
T Consensus 4 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~----~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 79 (140)
T 1ggw_A 4 DSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIES----TLPAEVDMEQFLQVLNRPNGFDMPGDPEEFV 79 (140)
T ss_dssp CTTTHHHHHHTCSSSSSEECHHHHHHHHHHTSCCCCHHHHHHHHT----TSCSSEEHHHHHHHHCTTSSSSSSCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHh----CCCCcCcHHHHHHHHHHHhcccCcccHHHHH
Confidence 4578999999999999999999999999988754 556667776 8899999999999886543211110 1112
Q ss_pred ccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 79 VNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
..+...+... .+......|..++..+|... +.+++..++..+ +. ..+..+|++|+..+.
T Consensus 80 ~~F~~~D~d~---~G~i~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d~--~dg~i~~~eF~~~~~ 138 (140)
T 1ggw_A 80 KGFQVFDKDA---TGMIGVGELRYVLTSLGEKL-------SNEEMDELLKGV--PV--KDGMVNYHDFVQMIL 138 (140)
T ss_dssp HHHHTTCSSC---SSCCCHHHHHHHHHHHHSCS-------CHHHHHHHHHHT--TC--SSCCSTTTHHHHHHH
T ss_pred HHHHHhCCCC---CCcEeHHHHHHHHHHcCCCC-------CHHHHHHHHHhc--cC--CCCcEeHHHHHHHHh
Confidence 2233333222 22334456888998888765 788999999998 55 466789999988664
No 265
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=98.92 E-value=4.1e-09 Score=99.17 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=97.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..+++++|..+|.|++|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|+||+..+..... ....
T Consensus 26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~-------~~~~ 98 (191)
T 1y1x_A 26 NQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILS-------MREG 98 (191)
T ss_dssp TSCHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHH-------HHHH
Confidence 56799999999999999999999999998765 56778889999999999999999999998764310 0111
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
+...+.. ..+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+..
T Consensus 99 F~~~D~d---~~G~i~~~e~~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dg~i~~~eF~~~~~~ 157 (191)
T 1y1x_A 99 FRKRDSS---GDGRLDSNEVRAALLSSGYQV-------SEQTFQALMRKF--DRQ-RRGSLGFDDYVELSIF 157 (191)
T ss_dssp HHHHCTT---SSSCBCHHHHHHHHHTTSCCC-------CHHHHHHHHHHH--CTT-CSSSBCHHHHHHHHHH
T ss_pred HHHhCCC---CCCeEcHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCeEeHHHHHHHHHH
Confidence 1111221 122233456888888888755 788999999999 544 3556789999987764
No 266
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.92 E-value=5.5e-10 Score=104.65 Aligned_cols=106 Identities=7% Similarity=0.023 Sum_probs=67.3
Q ss_pred CCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHH----c-CCCCcEEEEEeCC-CCCCccccccccccC
Q psy8073 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEV----T-ENSIPIVICANKV-DLRADAQAKGVKCID 522 (593)
Q Consensus 449 aG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~----~-~~~~piivV~NK~-Dl~~~~~~~~~~~v~ 522 (593)
+||..++.+|+.||.++|++|||+|++|..-++ .+.-+..+..+ . ..++|++|++||. |+... .+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--------ms 180 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------MP 180 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--------CC
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--------CC
Confidence 378899999999999999999999999875443 22222122221 1 2568999999995 77543 22
Q ss_pred HHHHH-HHHH---HhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 523 REVGE-KLAQ---QYGAIFMETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 523 ~~~~~-~l~~---~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
..++. .+.. ...+.+..|||++|.|+.+.++||+..+..+.
T Consensus 181 ~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 181 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 22221 1110 12346899999999999999999998876543
No 267
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=98.92 E-value=2.3e-09 Score=96.47 Aligned_cols=134 Identities=17% Similarity=0.237 Sum_probs=95.0
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCCC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAGA 83 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~ 83 (593)
.+++.+|..+|.|++|+|+..|+ ..+..++.++ .+..+|..+|.|++|.|+|+||+.++................+..
T Consensus 6 ~~l~~~F~~~D~d~~G~i~~~el-~~l~~~~~~~-~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~ 83 (155)
T 3ll8_B 6 KRLGKRFKKLDLDNSGSLSVEEF-MSLPELQQNP-LVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRI 83 (155)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHH-TTSGGGTTCT-THHHHHHHHCTTCSSSBCHHHHHHHHGGGCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCeEcHHHH-HHhhccccch-HHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 57899999999999999999999 6777777666 788999999999999999999999987643221111222222222
Q ss_pred CCCCCCCCCCchhhhHHHHHHHh-hhhhhhhhccccCchHHHHHHHH----HhcCCCCCchhhhhHHHHHHHHH
Q psy8073 84 MSSEGPERRNSDVQNAWSLLLAG-IGEANVHKFLNTSGKKLADLYHE----LRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~-lg~~~~~~~~~~~~eev~~l~~~----l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
.+... .+......|..++.. +|... +.+++..++.. + +.+ ..+..+|++|+..+.+
T Consensus 84 ~D~d~---~G~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~--D~~-~dg~i~~~eF~~~~~~ 144 (155)
T 3ll8_B 84 YDMDK---DGYISNGELFQVLKMMVGNNL-------KDTQLQQIVDKTIINA--DKD-GDGRISFEEFCAVVGG 144 (155)
T ss_dssp HCTTC---SSCBCHHHHHHHHHHHHGGGS-------CHHHHHHHHHHHHHHH--CTT-SSSSBCHHHHHHHHGG
T ss_pred hCCCC---CCcCcHHHHHHHHHHHhccCC-------CHHHHHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHhc
Confidence 22222 222334568888877 57655 77888888888 7 443 3556789999876543
No 268
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=98.90 E-value=2.1e-09 Score=96.94 Aligned_cols=131 Identities=14% Similarity=0.241 Sum_probs=96.7
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++.+|..+|+|++|+|+..||..+++.+| ++..++..++..+ +|.|+|+||+.++................+
T Consensus 16 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~----~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 91 (153)
T 2ovk_B 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC----PGQLNFTAFLTLFGEKVSGTDPEDALRNAF 91 (153)
T ss_dssp HHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS----SSCCCSHHHHHTTTTTTTTCCCTTHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCCCHHHHHHHHHHHhccCChHHHHHHHH
Confidence 5789999999999999999999999999887 4566777898887 799999999998865433222222222233
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+... .+......|..++..+|... +.+++..++..+ +. ..+..+|++|+..+.+
T Consensus 92 ~~~D~d~---~G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d~--~dg~I~~~eF~~~~~~ 148 (153)
T 2ovk_B 92 SMFDEDG---QGFIPEDYLKDLLENMGDNF-------SKEEIKNVWKDA--PL--KNKQFNYNKMVDIKGK 148 (153)
T ss_dssp HTTCSSC---SSCCCHHHHHHHHHHSSSCC-------CHHHHHHHHHHC--CE--ETTEECHHHHHHHHHC
T ss_pred HHHCCCC---CCeEcHHHHHHHHHHcCCCC-------CHHHHHHHHHHc--CC--CCCEEeHHHHHHHHhc
Confidence 3333322 22333456899998998765 888999999998 54 5667899999987654
No 269
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=98.90 E-value=1.3e-09 Score=87.67 Aligned_cols=66 Identities=27% Similarity=0.457 Sum_probs=59.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC----CCHHHHHH----HHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD----IQPTDSDA----IFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~----l~~~e~~~----i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
.++++.+|..||.|++|+|+..|+..++..+| +++.++.. +|..+|.|++|.|+|+||+..+..++
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~~~ 79 (83)
T 1yx7_A 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELL 79 (83)
T ss_dssp CTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHHHH
Confidence 46899999999999999999999999999666 66777888 99999999999999999998877654
No 270
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=98.90 E-value=1.4e-09 Score=87.02 Aligned_cols=64 Identities=22% Similarity=0.449 Sum_probs=58.5
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+..+++ +|..||.+++|+|+..||..++..+| ++..++..+|..+|.|++|.|+|+||+.++..
T Consensus 7 ~~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 73 (81)
T 1c7v_A 7 EEEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKK 73 (81)
T ss_dssp CHHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHHC
T ss_pred HHHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 357899 99999999999999999999999877 67778899999999999999999999998854
No 271
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=98.90 E-value=1.5e-09 Score=98.62 Aligned_cols=64 Identities=13% Similarity=0.237 Sum_probs=59.1
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+++.++.+|..||+|++|+|+..+|+.+|..+| ++..+++.||..+|.+ ||.|+|+||+.+|..
T Consensus 83 ~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~m~~ 148 (153)
T 3i5g_B 83 PEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIKGK 148 (153)
T ss_dssp CHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTTCCEE-TTEECHHHHHHHHHC
T ss_pred cHHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHHhCCC-cCEEcHHHHHHHhcC
Confidence 357899999999999999999999999999887 7888999999999988 999999999998854
No 272
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=98.90 E-value=3.1e-09 Score=86.06 Aligned_cols=65 Identities=6% Similarity=0.016 Sum_probs=58.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHH---HHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTD---SDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e---~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++.+|..||++++|+|+..+|..+++.+| ++..+ +..+|..+|.|++|.|+| ||+.++...+
T Consensus 13 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~~~~ 82 (86)
T 1j7q_A 13 KDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCSKWV 82 (86)
T ss_dssp HHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHHHHH
Confidence 35789999999999999999999999999887 55667 889999999999999999 9999987754
No 273
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=98.90 E-value=2.7e-09 Score=97.54 Aligned_cols=64 Identities=30% Similarity=0.421 Sum_probs=58.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCC--CCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDH--DGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~--d~~G~i~~~eF~~~~~~ 66 (593)
.++++++|..||+|++|+|+..+|+.+|..+| ++..+++.||..+|. |++|.|+|+||+.+|-.
T Consensus 84 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~ 151 (159)
T 3i5g_C 84 ADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151 (159)
T ss_dssp HHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHC
Confidence 56899999999999999999999999999877 788899999999996 88999999999988754
No 274
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=98.88 E-value=2.5e-09 Score=90.53 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=57.6
Q ss_pred HHHHHHHHhHhC-CCCC-CcccHHHHHHHHHc-CC--CC-HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCD-KKGT-GQIGPEEFRELCTG-FD--IQ-PTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~-G~I~~~el~~~l~~-l~--l~-~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
.++++++|..|| +|++ |+|+..||+.+|+. +| .+ +.+++.||..+|.|+||.|+|+||+.++....
T Consensus 21 ~~~l~~aF~~fD~~dg~~G~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~~~ 92 (106)
T 2h2k_A 21 IETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELA 92 (106)
T ss_dssp HHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHH
Confidence 358999999999 7996 79999999999985 66 32 46899999999999999999999999987654
No 275
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=98.88 E-value=2.1e-09 Score=84.61 Aligned_cols=66 Identities=26% Similarity=0.496 Sum_probs=59.8
Q ss_pred CHHHHHHHHhHh-CCCCC-CcccHHHHHHHHHcCC--C--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTC-DKKGT-GQIGPEEFRELCTGFD--I--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 2 ~~~~l~~~F~~~-D~d~~-G~I~~~el~~~l~~l~--l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
+.++++.+|..| |++++ |+|+..++..++..+| + +..++..+|..+|.|++|.|+|+||+.++...
T Consensus 3 ~~~~l~~~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 74 (76)
T 1qx2_A 3 SPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI 74 (76)
T ss_dssp CHHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence 467899999999 99999 9999999999999776 5 66788999999999999999999999988653
No 276
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=98.88 E-value=3.8e-09 Score=88.32 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=57.9
Q ss_pred HHHHHHHHhHhC-CCCCC-cccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCD-KKGTG-QIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++++|..|| +|++| +|+..||+.+++. +| ++..+++.|+..+|.|++|.|+|+||+.++...
T Consensus 9 ~~~l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~ 82 (99)
T 2y5i_A 9 MDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (99)
T ss_dssp HHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 458999999997 89998 9999999999985 44 567789999999999999999999999998764
No 277
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=98.88 E-value=2.5e-09 Score=88.12 Aligned_cols=65 Identities=14% Similarity=0.375 Sum_probs=58.8
Q ss_pred HHHHHHHHhHhC-CCCCC-cccHHHHHHHHHc---CC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCD-KKGTG-QIGPEEFRELCTG---FD-IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~---l~-l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++++|..|| +|++| +|+..||+.+++. +| ++..+++.+|..+|.|++|.|+|+||+.++..+
T Consensus 9 ~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~D~d~dG~I~f~EF~~~~~~~ 79 (92)
T 2kax_A 9 LTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTML 79 (92)
T ss_dssp HHHHHHHHHHHHTTSSCSSEEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHHTTTCSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCeeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 357999999999 99999 9999999999985 44 677789999999999999999999999998765
No 278
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=98.88 E-value=7.8e-09 Score=95.11 Aligned_cols=134 Identities=13% Similarity=0.236 Sum_probs=95.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHH----HHHcCCCC--HHHHH-----------HHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRE----LCTGFDIQ--PTDSD-----------AIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~----~l~~l~l~--~~e~~-----------~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
..+++.+|..+|.|++|+|+..|+.. +++.+|.+ ..++. .+|..+|.|++|.|+|+||+.++.
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef~~~~~ 85 (176)
T 1nya_A 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTE 85 (176)
T ss_dssp HHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 35789999999999999999999999 67777754 44554 789999999999999999999987
Q ss_pred HHhhhhhh-------hhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCc
Q psy8073 66 EFLNSDAR-------RLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPE 138 (593)
Q Consensus 66 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ 138 (593)
........ .......+...+.. ..+......|..++..+| . +.+++..++..+ +.+ ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~d---~~G~I~~~e~~~~l~~~g--~-------~~~~~~~~~~~~--D~d-~d 150 (176)
T 1nya_A 86 NLIFEQGEASFNRVLGPVVKGIVGMCDKN---ADGQINADEFAAWLTALG--M-------SKAEAAEAFNQV--DTN-GN 150 (176)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHHHTCSS---CCSEEEHHHHHHHHHHTT--C-------CHHHHHHHHHHH--CTT-CS
T ss_pred HHhcCCchhhHHHHHHHHHHHHHHHhcCC---CCCCCCHHHHHHHHHHhC--C-------CHHHHHHHHHHh--CCC-CC
Confidence 76432211 01111222222222 222334456888888877 3 778899999999 544 34
Q ss_pred hhhhhHHHHHHHH
Q psy8073 139 IVTHFEGALSSLL 151 (593)
Q Consensus 139 ll~~~E~~i~~~~ 151 (593)
+..+|++|+..+.
T Consensus 151 g~i~~~ef~~~~~ 163 (176)
T 1nya_A 151 GELSLDELLTAVR 163 (176)
T ss_dssp SEEEHHHHHHHHS
T ss_pred CCCcHHHHHHHHH
Confidence 5678999987653
No 279
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=98.87 E-value=8.5e-09 Score=94.20 Aligned_cols=132 Identities=14% Similarity=0.214 Sum_probs=95.8
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC---CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDI---QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l---~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
.+++.+|..+|.|++|+|+..||..+++.+|. +..++..+|... +|.|+|+||+.++................
T Consensus 25 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~----dg~i~~~eF~~~~~~~~~~~~~~~~l~~~ 100 (166)
T 2mys_B 25 EDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTVFLTMFGEKLKGADPEDVIMGA 100 (166)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC----CCCcCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 47899999999999999999999999998776 455677888764 79999999999987654322222222223
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
+...+... .+......|..++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.+
T Consensus 101 F~~~D~d~---~G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dg~I~~~eF~~~~~~ 159 (166)
T 2mys_B 101 FKVLDPDG---KGSIKKSFLEELLTTGGGRF-------TPEEIKNMWAAF--PPD-VAGNVDYKNICYVITH 159 (166)
T ss_pred HHHhCCCC---CcceeHHHHHHHHHHcCCCC-------CHHHHHHHHHhc--CCC-CCCeEeHHHHHHHHHh
Confidence 33333222 22233456888898888765 888999999988 443 3566799999987765
No 280
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=98.87 E-value=3.5e-09 Score=87.81 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=55.4
Q ss_pred HHHHHHHHhHhC-CCC-CCcccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCD-KKG-TGQIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~-~G~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++++|..|| +|+ +|+|+..||+.+++. +| ++..+++.|+..+|.|+||.|+|+||+.++....
T Consensus 8 ~~~l~~~F~~fD~~dgd~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~ 82 (95)
T 1j55_A 8 MGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAIT 82 (95)
T ss_dssp HHHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHH
Confidence 468999999999 798 589999999999985 44 4566788999999999999999999999987653
No 281
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=98.87 E-value=1.7e-09 Score=98.11 Aligned_cols=135 Identities=11% Similarity=0.158 Sum_probs=98.1
Q ss_pred HHHHHHHhHhC--CCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh--hhhcc
Q psy8073 4 LQLEELFKTCD--KKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA--RRLKS 77 (593)
Q Consensus 4 ~~l~~~F~~~D--~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~--~~~~~ 77 (593)
.+++++|..+| .+++|+|+..||..+++.+|. +..++..+|..+|.+ +|.|+|+||+.++........ .....
T Consensus 9 ~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~d~~-~g~i~~~eF~~~~~~~~~~~~~~~~~~l 87 (159)
T 2ovk_C 9 EEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMG-EKAYKLEEILPIYEEMSSKDTGTAADEF 87 (159)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHTTCCSSTT-SCEEEHHHHHHHHHHHTTCSTTCCHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-CCeEcHHHHHHHHHHHhhccCCCcHHHH
Confidence 58999999999 999999999999999998874 566778999999875 799999999999865322111 11111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHH--HHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYH--ELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~--~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+...+.. ..+......|..++..+|... +.+++..++. .+ +.+ ..+..+|++|+..+.+
T Consensus 88 ~~~F~~~D~d---~~G~I~~~El~~~l~~~g~~~-------~~~~~~~~~~~~~~--D~d-~dg~i~~~eF~~~~~~ 151 (159)
T 2ovk_C 88 MEAFKTFDRE---GQGLISSAEIRNVLKMLGERI-------TEDQCNDIFTFCDI--RED-IDGNIKYEDLMKKVMA 151 (159)
T ss_dssp HHHHHHTCTT---SSSEECHHHHHHHHHHSSSCC-------CHHHHHHHHHHTTC--CCC-TTCCEEHHHHHHHHHH
T ss_pred HHHHHHHCCC---CCCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHhcC--CCC-CCCcEeHHHHHHHHhc
Confidence 2223223222 223344456999999998765 8889999999 77 443 3566789999987764
No 282
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=98.86 E-value=5.7e-09 Score=85.96 Aligned_cols=64 Identities=20% Similarity=0.417 Sum_probs=57.3
Q ss_pred HHHHHHHhHhCCCCCC---cccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 4 LQLEELFKTCDKKGTG---QIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G---~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
.+++++|..|| +++| +|+..||+.+++. +| ++..+++.+|..+|.|+||.|+|+||+.++..+.
T Consensus 9 ~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~ 82 (92)
T 3rm1_A 9 VALIDVFHQYS-GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMIT 82 (92)
T ss_dssp HHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-cCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHH
Confidence 57899999999 7666 9999999999997 76 5677889999999999999999999999987754
No 283
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=98.86 E-value=5.2e-09 Score=87.58 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=56.6
Q ss_pred HHHHHHHHhHhCCCC---CCcccHHHHHHHHHc-CC--CC----HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKG---TGQIGPEEFRELCTG-FD--IQ----PTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~---~G~I~~~el~~~l~~-l~--l~----~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++++|+.||+++ +|+|+..||+.+|+. +| ++ +.+++.||..+|.|+||.|+|+||+.+|..+.
T Consensus 10 i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~~ 85 (100)
T 3nxa_A 10 VIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGIT 85 (100)
T ss_dssp HHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 368999999999963 799999999999985 33 32 46788999999999999999999999998753
No 284
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=98.86 E-value=1e-08 Score=94.59 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=94.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC----------CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF----------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA 72 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l----------~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 72 (593)
..+++++|..+| +++|+|+..|+..+++.+ +++..++..+|..+|.|++|.|+|+||+..+.....
T Consensus 3 ~~~l~~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~--- 78 (173)
T 1alv_A 3 VRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKK--- 78 (173)
T ss_dssp HHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHH---
Confidence 368999999999 999999999999999864 567778899999999999999999999988764310
Q ss_pred hhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 73 RRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
....+...+.... +......+..++..+|... +.+++..++..+ + +..+..+|++|+..+..
T Consensus 79 ----~~~~F~~~D~d~~---G~i~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d--d~dg~i~~~eF~~~~~~ 140 (173)
T 1alv_A 79 ----WQAIYKQFDVDRS---GTIGSSELPGAFEAAGFHL-------NEHLYSMIIRRY--S--DEGGNMDFDNFISCLVR 140 (173)
T ss_dssp ----HHHHHHHHCTTCC---SSBCTTTHHHHHHHHTCCC-------CHHHHHHHHHHH--T--CSSSCBCHHHHHHHHHH
T ss_pred ----HHHHHHHHCCCCC---CCCCHHHHHHHHHHcCCCC-------CHHHHHHHHHHh--c--CCCCcCcHHHHHHHHHH
Confidence 0111111121111 1122234888888888654 778999999988 3 45667899999887654
No 285
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=98.85 E-value=2.3e-09 Score=92.72 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=57.3
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
+.++.+|+.||.| +|+|+..||+.+|+. +| .++.+++.||..+|.|+||.|+|+||+.+|..+.
T Consensus 15 e~l~~~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l~ 85 (121)
T 4drw_A 15 ETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLT 85 (121)
T ss_dssp HHHHHTTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence 5688999999998 899999999999974 33 6778899999999999999999999999998753
No 286
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=98.85 E-value=1.2e-09 Score=83.47 Aligned_cols=60 Identities=28% Similarity=0.468 Sum_probs=54.0
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 6 LEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 6 l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
++.+|..+|.|++|+|+..|+..+++.+| ++..++..+|..+|.|++|.|+|+||..++.
T Consensus 2 l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp CCHHHHHHCTTCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 46789999999999999999999999776 4556778999999999999999999999874
No 287
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Probab=98.85 E-value=2.7e-09 Score=88.50 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=57.9
Q ss_pred HHHHHHHHhHhC-CCCCC-cccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCD-KKGTG-QIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++++|..|| +|++| +|+..||+.+++. +| ++..+++.++..+|.|++|.|+|+||+.++...
T Consensus 11 ~~~l~~~F~~fD~~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~~ 84 (95)
T 2wcb_A 11 LEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIA 84 (95)
T ss_dssp HHHHHHHHHHHHTSSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 457999999999 89998 9999999999985 33 577789999999999999999999999998764
No 288
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=98.84 E-value=5.9e-09 Score=98.54 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=96.1
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..+++.+|..||.|++|+|+..+|..+|+.+|. +..++..+|..+ +|.|+|++|+.++................
T Consensus 56 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~----~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 131 (196)
T 3dtp_E 56 VQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA----PGPINFTMFLTIFGDRIAGTDEEDVIVNA 131 (196)
T ss_dssp HHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTS----SSCCBHHHHHHHHHHCCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHc----cCCCcHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 457999999999999999999999999998874 556677888876 79999999999997654322222222223
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
|...+.. ..+......|..++ .+|... +.+++..++..+ +.+ ..+..+|++|+..+.+
T Consensus 132 F~~~D~d---~~G~Is~~El~~~l-~~g~~~-------~~~~~~~l~~~~--D~d-~dG~I~~~EF~~~l~~ 189 (196)
T 3dtp_E 132 FNLFDEG---DGKCKEETLKRSLT-TWGEKF-------SQDEVDQALSEA--PID-GNGLIDIKKFAQILTK 189 (196)
T ss_dssp HHTTCSS---SSCCBHHHHHHHHH-HSSSCC-------CHHHHHHHHHSS--CEE-TTEECHHHHHHHHHSS
T ss_pred HHHHCCC---CCCcCcHHHHHHHH-HcCCCC-------CHHHHHHHHHHc--CCC-CCCEEeHHHHHHHHHc
Confidence 3333322 22334445689999 998765 888999999888 433 3567899999987653
No 289
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=98.84 E-value=5e-09 Score=88.87 Aligned_cols=65 Identities=34% Similarity=0.580 Sum_probs=58.7
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGF---D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..++++.+|..||+|++|+|+..|+..++..+ | ++..+++.+|..+|.|++|.|+|+||+.+|..
T Consensus 39 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 108 (109)
T 5pal_A 39 TDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVAQ 108 (109)
T ss_dssp CHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 35789999999999999999999999999866 4 67888899999999999999999999998864
No 290
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.84 E-value=3.2e-10 Score=118.29 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=89.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC----ccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh--------hhhH
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKE----VFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR--------SMTK 459 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~----~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~--------~~~~ 459 (593)
+.+|+++|.+|||||||+|+|++. .-....+..+|++.....+.++.. +.++||||..... ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 458999999999999999999976 112234455667777777766642 7999999943211 1112
Q ss_pred hhc--cCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCeE
Q psy8073 460 NYF--RRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF 537 (593)
Q Consensus 460 ~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 537 (593)
.++ ...|.++++++......+..+. .+......+.|+++|+||+|...... .......+.+..+..+
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~-------~~~~~~~~~~~~g~~l 307 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTK-------LEKADSLYANQLGELL 307 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEE-------GGGHHHHHHHHBTTTB
T ss_pred HHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCccccccc-------HHHHHHHHHHhcCCcc
Confidence 222 6789999999985321111111 12223345689999999999865321 1223344556677666
Q ss_pred EEEcCCCCCCH
Q psy8073 538 METSSKSGDNI 548 (593)
Q Consensus 538 ~e~Sa~~g~gi 548 (593)
.+.++....++
T Consensus 308 ~p~~~~~~~~~ 318 (369)
T 3ec1_A 308 SPPSKRYAAEF 318 (369)
T ss_dssp CSSCGGGTTTC
T ss_pred CCCCchhhhhc
Confidence 66666655554
No 291
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=98.83 E-value=6.8e-09 Score=89.08 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=58.6
Q ss_pred HHHHHHHHhHhC-CCCCC-cccHHHHHHHHH-cCC-------CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCD-KKGTG-QIGPEEFRELCT-GFD-------IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~-~l~-------l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++++|..|| +|++| +|+..||+.+|+ .+| ++..++..||..+|.|++|.|+|+||+.++..+.
T Consensus 11 ~~~l~~~F~~fD~~dgdG~~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~ 86 (113)
T 1xk4_C 11 IETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLT 86 (113)
T ss_dssp HHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHHH
Confidence 357899999999 59999 999999999999 777 3567888999999999999999999999987653
No 292
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=98.83 E-value=2e-09 Score=102.10 Aligned_cols=134 Identities=17% Similarity=0.270 Sum_probs=94.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhh-------------
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNS------------- 70 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~------------- 70 (593)
.+++.+|..+|.|++|+|+..||..+ ..+|.++. +..+|..+|.|++|.|+|+||+.++......
T Consensus 29 ~~l~~~F~~~D~d~dG~I~~~El~~~-~~lg~~~~-~~~l~~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~ 106 (202)
T 2bec_A 29 LRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPL-GDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKP 106 (202)
T ss_dssp HHHHHHHHHHCSSCSSCCCHHHHHTC-HHHHHSTT-HHHHHHTTSCSSCCCCCHHHHHHHHGGGSCCCHHHHC-----CC
T ss_pred HHHHHHHHHHCCCCCCCcCHHHHHHH-HhcCCCcc-HHHHHHHhCCCCCCcCcHHHHHHHHHHhcccchhcccccccccc
Confidence 46788899999999999999999999 87787766 8899999999999999999999998665320
Q ss_pred ---hhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhh-hhhhhhhccccCchHHHHHHHH----HhcCCCCCchhhh
Q psy8073 71 ---DARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGI-GEANVHKFLNTSGKKLADLYHE----LRTSSNCPEIVTH 142 (593)
Q Consensus 71 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-g~~~~~~~~~~~~eev~~l~~~----l~~~~~~p~ll~~ 142 (593)
..........+...+. ...+......|..++..+ |... +.+++..++.. + +.+ ..+..+
T Consensus 107 ~~~~~~~~~l~~~F~~~D~---d~dG~Is~~El~~~l~~~~g~~~-------~~~~~~~~~~~~~~~~--D~d-~dG~Is 173 (202)
T 2bec_A 107 EPLNSRRNKLHYAFQLYDL---DRDGKISRHEMLQVLRLMVGVQV-------TEEQLENIADRTVQEA--DED-GDGAVS 173 (202)
T ss_dssp CCTTSHHHHHHHHHHHHCT---TCSSEECHHHHHHHHHHSCCSCC-------CHHHHHHHHHHHHHHH--CSS-CSSSEE
T ss_pred cccccHHHHHHHHHHHhCC---CCCCeEcHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHHc--CCC-CCCcCc
Confidence 0000011111111111 122233445688888887 7654 77888888888 7 443 355678
Q ss_pred hHHHHHHHHH
Q psy8073 143 FEGALSSLLD 152 (593)
Q Consensus 143 ~E~~i~~~~~ 152 (593)
|++|+..+.+
T Consensus 174 ~~EF~~~~~~ 183 (202)
T 2bec_A 174 FVEFTKSLEK 183 (202)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 293
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.9e-09 Score=98.13 Aligned_cols=62 Identities=27% Similarity=0.566 Sum_probs=57.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
+++++.+|..||+|++|+|+..||+.+|..+| ++..+++.||..+| |+||.|+|+||+.+|.
T Consensus 83 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~d-d~dG~I~~~EF~~~m~ 146 (176)
T 2lhi_A 83 EQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALLS 146 (176)
T ss_dssp HHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHH-TTSSCBCTTHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhhc-CCCCeEeHHHHHHHHH
Confidence 56799999999999999999999999999776 77888999999999 9999999999999884
No 294
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=98.83 E-value=1.3e-08 Score=95.37 Aligned_cols=70 Identities=26% Similarity=0.415 Sum_probs=64.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA 72 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 72 (593)
...++.+|..+|+|++|+|+..|+..++..+|+++.+++.+|..+|.|++|+|+|+||+.++..++.+..
T Consensus 108 ~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~~~s~d 177 (191)
T 2ccm_A 108 TKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWTEYFVSND 177 (191)
T ss_dssp HHHHHHHHHHHCTTCSSBCCHHHHHHHHHTTTCCHHHHHHHHHHHTTTTTSCCBHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhcCCC
Confidence 3578899999999999999999999999999999999999999999999999999999999998865543
No 295
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=98.82 E-value=7.1e-09 Score=109.61 Aligned_cols=136 Identities=13% Similarity=0.258 Sum_probs=98.8
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++++|..+|.|++|+|+..||..+|..++ ++..++..+|..+|.|++|.|+|+||+.++................+
T Consensus 312 ~el~~~F~~fD~D~dG~Is~~EL~~~L~~lg~~~s~eel~~Lf~~~D~DgdG~IsfeEFl~ll~~~~~~~~~~e~l~~aF 391 (450)
T 3sg6_A 312 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAF 391 (450)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTSSSSEEHHHHHHHHHC------CHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhhccccchhhHHHHHH
Confidence 5799999999999999999999999999876 56678889999999999999999999998865432221111122222
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+.. ..+......|+.++..+|... +.+++..++..+ +.+ ..+..+|++|+..+.+
T Consensus 392 k~fD~D---~dG~Is~eELr~~L~~lG~~l-------s~eei~~Lf~~~--D~D-~DG~IsfdEFv~~L~~ 449 (450)
T 3sg6_A 392 RVFDKD---GNGYISAAELRHVMTNLGEKL-------TDEEVDEMIREA--DID-GDGQVNYEEFVQMMTA 449 (450)
T ss_dssp HHHCTT---CSSEECHHHHHHHHHHHTCCC-------CHHHHHHHHHHH--CTT-SSSSEEHHHHHHHHC-
T ss_pred HHhCCC---CCCeEeHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CCC-CCCcEeHHHHHHHHhc
Confidence 222222 122334456889998888765 788999999999 443 4566799999987643
No 296
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=98.82 E-value=2.2e-08 Score=90.99 Aligned_cols=135 Identities=17% Similarity=0.263 Sum_probs=93.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHH----HcCCC--CHHHHHH-----------HHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELC----TGFDI--QPTDSDA-----------IFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l----~~l~l--~~~e~~~-----------i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
..+++.+|..+|.|++|+|+..|+..++ +.+|. +..++.. +|..+|.|++|.|+|+||+.++.
T Consensus 3 ~~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~ 82 (166)
T 3akb_A 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGAV 82 (166)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSSSCEEHHHHHHTHH
T ss_pred HHHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 5689999999999999999999999975 44454 4445554 47999999999999999999987
Q ss_pred HHhhhhhhh------hcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCch
Q psy8073 66 EFLNSDARR------LKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEI 139 (593)
Q Consensus 66 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~l 139 (593)
.......+. ......+...+... .+......|..++..+| . +.+++..++..+ +.+ ..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~F~~~D~d~---~G~i~~~E~~~~l~~~~--~-------~~~~~~~~~~~~--D~d-~dg 147 (166)
T 3akb_A 83 KRLRDKPDRFAEMARPFLHAALGVADTDG---DGAVTVADTARALTAFG--V-------PEDLARQAAAAL--DTD-GDG 147 (166)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHCSSS---SSCCBHHHHHHHHHHTT--C-------CHHHHHHHHHHH--CTT-CSS
T ss_pred HHhccCccchHHHHHHHHHHHHHHhCCCC---CCcCCHHHHHHHHHHhC--C-------CHHHHHHHHHHh--CCC-CCC
Confidence 764322111 00112222222221 22233455888887777 3 778899999999 543 356
Q ss_pred hhhhHHHHHHHHH
Q psy8073 140 VTHFEGALSSLLD 152 (593)
Q Consensus 140 l~~~E~~i~~~~~ 152 (593)
..+|++|+..+..
T Consensus 148 ~i~~~ef~~~~~~ 160 (166)
T 3akb_A 148 KVGETEIVPAFAR 160 (166)
T ss_dssp BCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHH
Confidence 6789999886643
No 297
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=98.82 E-value=8.8e-09 Score=91.92 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=57.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
...++.+|..||+|++|+|+..+|..++..+| ++..++..+|..+|.|++|.|+|+||+.+|
T Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~eF~~~~ 141 (143)
T 2obh_A 78 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141 (143)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 35789999999999999999999999999776 778899999999999999999999999876
No 298
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=98.82 E-value=6.8e-09 Score=87.48 Aligned_cols=64 Identities=22% Similarity=0.426 Sum_probs=58.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..+++.+|..||++++|+|+..||..++..+| ++..++..+|..+|.|++|.|+|+||+.++..
T Consensus 23 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~~~ 88 (105)
T 1wlz_A 23 YHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSS 88 (105)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHHhc
Confidence 46899999999999999999999999999766 67788899999999999999999999998864
No 299
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=98.81 E-value=7.2e-09 Score=87.84 Aligned_cols=63 Identities=29% Similarity=0.503 Sum_probs=57.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
.++++.+|..||+|++|+|+..|+..++..+ | ++..+++.+|..+|.|++|+|+|+||+.++.
T Consensus 41 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~EF~~~~~ 108 (109)
T 3fs7_A 41 PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK 108 (109)
T ss_dssp HHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 5789999999999999999999999999977 4 6788899999999999999999999998863
No 300
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=98.81 E-value=8e-09 Score=87.53 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..+++.+|..||+|++|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|+||+.++..
T Consensus 31 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~~~~~ 96 (107)
T 2d58_A 31 LEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLG 96 (107)
T ss_dssp HHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHSS
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 35789999999999999999999999999877 56778889999999999999999999998754
No 301
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=98.81 E-value=2.1e-08 Score=93.81 Aligned_cols=135 Identities=15% Similarity=0.106 Sum_probs=94.4
Q ss_pred HHHHHHHHhHh-CCCCCCcccHHHHHHHHHcC----CC--CHHHHHHHH-----------HHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTC-DKKGTGQIGPEEFRELCTGF----DI--QPTDSDAIF-----------ADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~-D~d~~G~I~~~el~~~l~~l----~l--~~~e~~~i~-----------~~~D~d~~G~i~~~eF~~~~ 64 (593)
..+++.+|..+ |.|++|+|+..|+..++..+ |. +..++..++ ..+|.|++|.|+|+||+.++
T Consensus 11 ~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 90 (191)
T 2ccm_A 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKMW 90 (191)
T ss_dssp HHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHHHHHH
Confidence 45789999999 99999999999999999876 64 455677777 99999999999999999998
Q ss_pred HHHhhhh--------hhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCC
Q psy8073 65 REFLNSD--------ARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNC 136 (593)
Q Consensus 65 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~ 136 (593)
....... .........+...+... .+......|..++..+| . +.+++..++..+ +.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~---dG~I~~~E~~~~l~~~g--~-------~~~~~~~~~~~~--D~d- 155 (191)
T 2ccm_A 91 AECVKSVEKGESLPEWLTKYMNFMFDVNDTSG---DNIIDKHEYSTVYMSYG--I-------PKSDCDAAFDTL--SDG- 155 (191)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHCTTC---SSBCCHHHHHHHHHTTT--C-------CHHHHHHHHHHH--TTT-
T ss_pred HHHhccccchhhchHHHHHHHHHHHHHhCCCC---CCcCcHHHHHHHHHHhC--C-------CHHHHHHHHHHh--CCC-
Confidence 7753210 00011111222222221 22233445888887776 3 678899999999 544
Q ss_pred CchhhhhHHHHHHHHH
Q psy8073 137 PEIVTHFEGALSSLLD 152 (593)
Q Consensus 137 p~ll~~~E~~i~~~~~ 152 (593)
..+..+|++|+..+..
T Consensus 156 ~dG~i~~~Ef~~~~~~ 171 (191)
T 2ccm_A 156 GKTMVTREIFARLWTE 171 (191)
T ss_dssp TTSCCBHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 3556789999887654
No 302
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=98.81 E-value=9.4e-09 Score=91.09 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=59.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++.+|..||+|++|+|+..||..++..+| ++..+++.+|..+|.|++|.|+|+||+.++...
T Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 106 (135)
T 3h4s_E 39 VSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRL 106 (135)
T ss_dssp HHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHh
Confidence 46799999999999999999999999999776 577889999999999999999999999999765
No 303
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=98.81 E-value=3.7e-09 Score=83.63 Aligned_cols=65 Identities=31% Similarity=0.639 Sum_probs=58.6
Q ss_pred HHHHHHHHhHhCC-CCCC-cccHHHHHHHHHc-CC--C-CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDK-KGTG-QIGPEEFRELCTG-FD--I-QPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~-d~~G-~I~~~el~~~l~~-l~--l-~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++.+|..||. +++| +|+..|+..+++. +| + +..+++.+|..+|.|++|.|+|+||+.++..+
T Consensus 6 ~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 76 (78)
T 1cb1_A 6 PAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKKI 76 (78)
T ss_dssp HHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Confidence 5689999999999 9999 9999999999985 77 5 66778899999999999999999999988653
No 304
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=98.81 E-value=2.4e-09 Score=101.44 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=86.1
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
..++++|..+|.|++|+|+..||..++..+| ++..++..+|..+|.|++|.|+|+||+.++....... ........+
T Consensus 57 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~~~~~~~~~-~~~~l~~~F 135 (197)
T 3pm8_A 57 NNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYL-KKEVCLIPF 135 (197)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHHHHHC-------CEEHHHHHHTTCCHHHHC-SHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHhhh-hHHHHHHHH
Confidence 4689999999999999999999999999766 4567888999999999999999999998864432111 111111222
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhh--hhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGI--GEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l--g~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
...+.. ..+......|..++..+ |... +.+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 136 ~~~D~d---~~G~Is~~El~~~l~~~~~~~~~-------~~~~~~~l~~~~--D~d-~dG~Is~~EF~~~l~ 194 (197)
T 3pm8_A 136 KFFDID---GNGKISVEELKRIFGRDDIENPL-------IDKAIDSLLQEV--DLN-GDGEIDFHEFMLMMS 194 (197)
T ss_dssp HHHCTT---CSSEECHHHHHHHHC----CCHH-------HHHHHHHHHHHH--CTT-CSSSEEHHHHHHHHH
T ss_pred HHHCCC---CCCCCCHHHHHHHHHhcccCCCC-------CHHHHHHHHHHH--cCC-CCCcCcHHHHHHHHH
Confidence 222222 22333445688888777 4443 678899999999 544 456678999988654
No 305
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=98.80 E-value=4.8e-09 Score=86.55 Aligned_cols=65 Identities=20% Similarity=0.337 Sum_probs=58.0
Q ss_pred HHHHHHHHhHhCC-CCCC-cccHHHHHHHH-HcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDK-KGTG-QIGPEEFRELC-TGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~-d~~G-~I~~~el~~~l-~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++.+|..||. |++| +|+..||..++ +.+| ++..++..+|..+|.|++|.|+|+||+.++...
T Consensus 9 ~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~ 78 (93)
T 1xk4_A 9 LNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKM 78 (93)
T ss_dssp HHHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcCeECHHHHHHHHHHHCcccCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3589999999999 9999 99999999999 7888 445577899999999999999999999998664
No 306
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=98.80 E-value=9.4e-09 Score=94.47 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=62.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
...++.+|..+|+|++|+|+..|+..++..+|+++.+++.+|..+|.|++|.|+|+||+.++..++
T Consensus 93 ~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~ 158 (174)
T 1q80_A 93 EGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFF 158 (174)
T ss_dssp HTHHHHHHHHHCTTSSSSBCHHHHHHHHHHHTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHHHHh
Confidence 367899999999999999999999999998899999999999999999999999999999998876
No 307
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=98.79 E-value=1e-08 Score=86.75 Aligned_cols=63 Identities=25% Similarity=0.474 Sum_probs=58.1
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
..+++.+|..||+|++|+|+..||..++..+ | ++..++..+|..+|.|++|.|+|+||+.++.
T Consensus 40 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (108)
T 2pvb_A 40 LDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107 (108)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 5689999999999999999999999999977 4 6788899999999999999999999998764
No 308
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=98.78 E-value=7.9e-09 Score=97.70 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=94.9
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC-------CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhc
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDI-------QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLK 76 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l-------~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~ 76 (593)
.++++ |..+|+|++|+|+..||..+++.+|+ +..++..+|..+|.|++|.|+|+||+.++.... .
T Consensus 33 ~~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~~-------~ 104 (198)
T 1juo_A 33 DPLYG-YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLN-------G 104 (198)
T ss_dssp CTTHH-HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH-------H
T ss_pred HHHHH-HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHH-------H
Confidence 46788 99999999999999999999998764 677888999999999999999999999876531 1
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
....+...+.. ..+......|..++..+|... +.+++..++..+ +. .+..+|++|+..+..
T Consensus 105 ~~~~F~~~D~d---~~G~I~~~el~~~l~~~g~~~-------~~~~~~~l~~~~--d~---dg~i~~~eF~~~~~~ 165 (198)
T 1juo_A 105 WRQHFISFDTD---RSGTVDPQELQKALTTMGFRL-------SPQAVNSIAKRY--ST---NGKITFDDYIACCVK 165 (198)
T ss_dssp HHHHHHTTCTT---CCSEECHHHHHHHHHHTTCCC-------CHHHHHHHHHHT--CS---SSSEEHHHHHHHHHH
T ss_pred HHHHHHHhCCC---CCCcCCHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--CC---CCeEcHHHHHHHHHH
Confidence 11122222222 122233456888888888755 788999999888 23 556799999987755
No 309
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=98.78 E-value=1.2e-08 Score=86.50 Aligned_cols=63 Identities=25% Similarity=0.518 Sum_probs=58.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
..+++.+|..||+|++|+|+..|+..++..+ | ++..+++.+|..+|.|++|.|+|+||+.++.
T Consensus 41 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 108 (110)
T 1pva_A 41 ANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVH 108 (110)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 5789999999999999999999999999977 4 6788899999999999999999999998875
No 310
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=98.78 E-value=5.9e-09 Score=98.65 Aligned_cols=142 Identities=15% Similarity=0.253 Sum_probs=92.1
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++.+|..+|+|++|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|+||+.++....... ........+
T Consensus 37 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~~~-~~~~~~~~F 115 (204)
T 3e3r_A 37 QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQA-REAVIAAAF 115 (204)
T ss_dssp ---CHHHHHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHTSCCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHhhcCch-HHHHHHHHH
Confidence 4688999999999999999999999999877 5666788999999999999999999999875422111 111111122
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhh-hccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVH-KFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~-~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+... .+......|..++..++...+. +. ..+.+++..++..+ +..+..+..+|++|+..+..
T Consensus 116 ~~~D~d~---~G~I~~~El~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--D~~d~dg~Is~~EF~~~~~~ 181 (204)
T 3e3r_A 116 AKLDRSG---DGVVTVDDLRGVYSGRAHPKVRSGE-WTEDEVLRRFLDNF--DSSEKDGQVTLAEFQDYYSG 181 (204)
T ss_dssp HHHCTTC---SSEECHHHHHHHCCCTTCHHHHTTS-SCHHHHHHHHHHHH--SCSSCCSCEEHHHHHHHHHH
T ss_pred HHhCcCC---CCeEeHHHHHHHHccccCCccccCC-CChHHHHHHHHHHh--hccCCCCcCcHHHHHHHHHH
Confidence 2222221 2223334577777654322100 10 02567799999999 54235666789998876554
No 311
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=98.77 E-value=1.6e-08 Score=96.26 Aligned_cols=135 Identities=9% Similarity=0.037 Sum_probs=96.1
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC----CCHHHHHHHH-------HHhCCCCCCcccHHHHHHHHHH------
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD----IQPTDSDAIF-------ADLDHDGDGKVSLEDFAYGFRE------ 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~----l~~~e~~~i~-------~~~D~d~~G~i~~~eF~~~~~~------ 66 (593)
.+++.+|..+|.|++|+|+..|+..++..+| .+..++..++ ..+|.|++|.|+|+||+.++..
T Consensus 36 ~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~l~~~~~~lf~~~D~d~dg~i~~~EF~~~~~~~~~~~~ 115 (208)
T 2hpk_A 36 SRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAER 115 (208)
T ss_dssp CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCBTTTBEEGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhhhh
Confidence 4789999999999999999999999998654 5677888898 9999999999999999999861
Q ss_pred --Hhhhhhh-hhc-ccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhh
Q psy8073 67 --FLNSDAR-RLK-SNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTH 142 (593)
Q Consensus 67 --~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~ 142 (593)
....... ... ....+...+... .+......|..++..+| . +.+++..++..+ +.+ ..+..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~F~~~D~d~---~G~Is~~El~~~l~~~g--~-------~~~~~~~~~~~~--D~d-~dG~I~ 180 (208)
T 2hpk_A 116 ERERRGEPSLIALLSNSYYDVLDDDG---DGTVDVDELKTMMKAFD--V-------PQEAAYTFFEKA--DTD-KSGKLE 180 (208)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCTTC---SSSBCHHHHHHHHHHTT--S-------CTTHHHHHHHHH--CTT-CCSSBC
T ss_pred hhhccCChHHHHHHHHHHHHHhCCCC---CCcCCHHHHHHHHHHhC--c-------CHHHHHHHHHHh--CCC-CCCcCc
Confidence 1111100 000 112222222222 22233456888888887 3 678899999999 544 355679
Q ss_pred hHHHHHHHHHH
Q psy8073 143 FEGALSSLLDD 153 (593)
Q Consensus 143 ~E~~i~~~~~~ 153 (593)
|++|+..+..-
T Consensus 181 ~~EF~~~~~~~ 191 (208)
T 2hpk_A 181 RTELVHLFRKF 191 (208)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877654
No 312
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=98.77 E-value=2.1e-08 Score=94.31 Aligned_cols=137 Identities=12% Similarity=0.179 Sum_probs=90.9
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCH-HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP-TDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAG 82 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~-~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 82 (593)
.+++.+|..+|.|++|+|+..|+..+++.+|... .++..+|..+|.|++|.|+|+||+.++..... .........+.
T Consensus 52 ~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~--~~~~~l~~~F~ 129 (191)
T 3k21_A 52 EKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDRKQ--LSKKLIYCAFR 129 (191)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCTTHHHHHHHHCTTCSSSEEHHHHHHHHSCGGG--CCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCCcHHHHHHHHHHhCCCCCCeEeHHHHHHHHHhhhh--ccHHHHHHHHH
Confidence 5789999999999999999999999999887532 67789999999999999999999998743221 11111112222
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 83 AMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
..+... .+......|..++...+... ..-....+++..++..+ +.+ ..+..+|++|+..+
T Consensus 130 ~~D~d~---~G~Is~~El~~~l~~~~~~~--~l~~~~~~~~~~~~~~~--D~d-~dG~Is~~EF~~~~ 189 (191)
T 3k21_A 130 VFDVDN---DGEITTAELAHILYNGNKKG--NITQRDVNRVKRMIRDV--DKN-NDGKIDFHEFSEMM 189 (191)
T ss_dssp HHSTTC---SSCBCHHHHHHHHHHSSSCS--CCCHHHHHHHHHHHHHH--CSS-SSSSBCHHHHHHHH
T ss_pred HhCCCC---CCcCCHHHHHHHHHhcCCCC--CCCHhHHHHHHHHHHHh--cCC-CCCeECHHHHHHHH
Confidence 222222 22233445777776633221 11000124689999998 554 45667899998754
No 313
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=98.77 E-value=1.3e-08 Score=93.30 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=90.6
Q ss_pred HHhHhCCCCCCcccHHHHHHHHHcCCC-------CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 9 LFKTCDKKGTGQIGPEEFRELCTGFDI-------QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 9 ~F~~~D~d~~G~I~~~el~~~l~~l~l-------~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.|..+|.|++|+|+..|+..+++.+|+ +..++..+|..+|.|++|.|+|+||+.++..... ....+
T Consensus 6 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~-------~~~~F 78 (167)
T 1gjy_A 6 GYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG-------WRQHF 78 (167)
T ss_dssp HHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHH-------HHHHH
Confidence 589999999999999999999997664 5678889999999999999999999998765310 01111
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+.. ..+......+..++..+|... +.+++..++..+ + ..+..+|++|+..+..
T Consensus 79 ~~~D~d---~~G~i~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d---~dg~i~~~eF~~~~~~ 134 (167)
T 1gjy_A 79 ISFDSD---RSGTVDPQELQKALTTMGFRL-------NPQTVNSIAKRY--S---TSGKITFDDYIACCVK 134 (167)
T ss_dssp HHHCTT---CCSEECHHHHHHHHHTTTCCC-------CHHHHHHHHHHT--C---BTTBEEHHHHHHHHHH
T ss_pred HHhCCC---CCCcCCHHHHHHHHHHcCCCC-------CHHHHHHHHHHh--C---cCCcCcHHHHHHHHHH
Confidence 111211 122233456888888888655 788899999888 2 3556899999887655
No 314
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.77 E-value=3.8e-10 Score=117.54 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcc-----ccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhhh--------hhh
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVF-----LNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFR--------SMT 458 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~-----~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~~--------~~~ 458 (593)
+.+|+++|.+|||||||+|+|++... ....+..+|++.....+.++.. +.++||||..... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 35899999999999999999987621 2224566777777777766653 7899999953211 111
Q ss_pred Hhh--ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHhCCe
Q psy8073 459 KNY--FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI 536 (593)
Q Consensus 459 ~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~~~~ 536 (593)
..+ ....+.++++++.........+. .+......+.|+++|+||+|..... -.......+.+..|..
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~-------~~~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRT-------KLEKADELYKNHAGDL 305 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEE-------EHHHHHHHHHHHBTTT
T ss_pred HHhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccccc-------cHHHHHHHHHHHhCCc
Confidence 122 35678888998874321111111 1222334568999999999986531 1123334455666665
Q ss_pred EEEEcC
Q psy8073 537 FMETSS 542 (593)
Q Consensus 537 ~~e~Sa 542 (593)
+.+.++
T Consensus 306 l~p~~~ 311 (368)
T 3h2y_A 306 LSPPTP 311 (368)
T ss_dssp BCSSCH
T ss_pred cCCCch
Confidence 444443
No 315
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.77 E-value=4.3e-09 Score=98.88 Aligned_cols=132 Identities=13% Similarity=0.165 Sum_probs=92.7
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++.+|..+|.|++|+|+..||..++..+| ++..++..+|..+|.|++|.|+|+||+.++...... .........+
T Consensus 10 ~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~-~~~~~l~~~F 88 (188)
T 1s6i_A 10 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKL-EREENLVSAF 88 (188)
T ss_dssp CSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHHTTSSSS-CCCCSTHHHH
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHhcc-CHHHHHHHHH
Confidence 4689999999999999999999999999887 556778899999999999999999999887532110 0001111112
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
...+. ...+......|..++..+| . +.+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 89 ~~~D~---d~dG~Is~~El~~~l~~~g--~-------~~~~~~~~~~~~--D~d-~dG~Is~~EF~~~~~ 143 (188)
T 1s6i_A 89 SYFDK---DGSGYITLDEIQQACKDFG--L-------DDIHIDDMIKEI--DQD-NDGQIDYGEFAAMMR 143 (188)
T ss_dssp HHTTT---TCSSEEEHHHHHHTTTTTT--C-------CTTHHHHHHHHH--CSS-SSSEEETTHHHHTTS
T ss_pred HHHCC---CCCCcCcHHHHHHHHHHcC--C-------CHHHHHHHHHHH--CCC-CCCcEeHHHHHHHHH
Confidence 22221 1222333445777776665 2 567899999999 544 345678999987654
No 316
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.76 E-value=3.7e-09 Score=113.84 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=85.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHh------cCccc---cCC-CC-----------ccceeeEEEEEE-------------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFS------KEVFL---NKL-GS-----------TLGVDFQMKTIR------------- 435 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~------~~~~~---~~~-~~-----------t~g~~~~~~~~~------------- 435 (593)
.+...|+|+|.+||||||++++|+ +..+. .++ .+ ..+.++......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 33211 100 00 011222211000
Q ss_pred ECCeeEEEEEEecCCchh----hhhhhHhh--ccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcE-EEEEeCCC
Q psy8073 436 VDERNVALQLWDTAGQER----FRSMTKNY--FRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPI-VICANKVD 508 (593)
Q Consensus 436 ~~~~~~~~~l~DTaG~e~----~~~~~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivV~NK~D 508 (593)
+...++.+.||||||... +......+ +..+|.+|+|+|++........ ...+... +|+ ++|+||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~~----~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKDK----VDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHHH----HCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHhh----cCceEEEEeCCc
Confidence 000236789999999542 11111111 2379999999999876432111 1222221 575 89999999
Q ss_pred CCCccccccccccCHHHHHHHHHHhCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q psy8073 509 LRADAQAKGVKCIDREVGEKLAQQYGAIF------------------METSSKSGDN-ILDALIALSRH 558 (593)
Q Consensus 509 l~~~~~~~~~~~v~~~~~~~l~~~~~~~~------------------~e~Sa~~g~g-i~~l~~~L~~~ 558 (593)
...... . ...+...++.++ +.+|+..|.| +..+++++...
T Consensus 252 ~~~~~g--------~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG--------G--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT--------H--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH--------H--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 863210 0 111223334332 3479999999 99999888754
No 317
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=98.76 E-value=1.6e-08 Score=92.38 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=91.3
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHHcCCC-------CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 8 ELFKTCDKKGTGQIGPEEFRELCTGFDI-------QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 8 ~~F~~~D~d~~G~I~~~el~~~l~~l~l-------~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
..|..+|+|++|+|+..|+..+++.+|+ +..++..+|..+|.|++|.|+|+||+.++..... ....
T Consensus 3 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~-------~~~~ 75 (165)
T 1k94_A 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNA-------WKEN 75 (165)
T ss_dssp HHHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHH-------HHHH
Confidence 3599999999999999999999998765 6678889999999999999999999998765310 1111
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
+...+... .+......+..++..+|... +.+++..++..+ + ..+..+|++|+..+..
T Consensus 76 F~~~D~d~---~G~i~~~el~~~l~~~g~~~-------~~~~~~~~~~~~--d---~dg~i~~~eF~~~~~~ 132 (165)
T 1k94_A 76 FMTVDQDG---SGTVEHHELRQAIGLMGYRL-------SPQTLTTIVKRY--S---KNGRIFFDDYVACCVK 132 (165)
T ss_dssp HHHHCTTC---CSBCCHHHHHHHHHHTTCCC-------CHHHHHHHHHHH--C---BTTBCBHHHHHHHHHH
T ss_pred HHHhCCCC---CceECHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--C---CCCeEcHHHHHHHHHH
Confidence 11122211 22233456888888888654 788999999988 2 3556799999887755
No 318
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=98.76 E-value=1e-08 Score=86.80 Aligned_cols=62 Identities=21% Similarity=0.509 Sum_probs=57.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
..+++.+|..||+|++|+|+..||..++..+ | ++..+++.+|..+|.|++|.|+|+||+.++
T Consensus 40 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 106 (108)
T 1rro_A 40 ASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMV 106 (108)
T ss_dssp HHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 5689999999999999999999999999987 3 678889999999999999999999999876
No 319
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=98.76 E-value=1.3e-08 Score=86.09 Aligned_cols=63 Identities=27% Similarity=0.533 Sum_probs=57.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
...++.+|..||+|++|+|+..||..++..+ | ++..+++.+|..+|.|++|.|+|+||+.++.
T Consensus 40 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 1rwy_A 40 ADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107 (109)
T ss_dssp HHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 5789999999999999999999999999966 4 6788899999999999999999999998875
No 320
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=98.76 E-value=1.7e-08 Score=79.35 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=53.0
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhC-CC----CCCcccHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLD-HD----GDGKVSLEDFAYGFR 65 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D-~d----~~G~i~~~eF~~~~~ 65 (593)
+.++++++|+.| ++++|||+..+|+. .+++++++.|+..+| .| ++|.|+|++|+.+|.
T Consensus 8 ~~eel~eAFr~f-~dg~G~It~~eLr~-----~lt~eevd~~i~~~d~~dg~~~~dG~idY~eF~~~m~ 70 (75)
T 1h8b_A 8 TAEQVIASFRIL-ASDKPYILAEELRR-----ELPPDQAQYCIKRMPAYSGPGSVPGALDYAAFSSALY 70 (75)
T ss_dssp THHHHHHHHHHH-TTSCSSBCHHHHHH-----HSCHHHHHHHHHHSCSCCCSSCCTTCBCHHHHHHHHT
T ss_pred CHHHHHHHHHHH-hcCCCCcCHHHHHh-----cCCHHHHHHHHHhcCcccCCCCCCCcCcHHHHHHHHh
Confidence 468999999999 99999999999999 489999999999999 56 589999999998874
No 321
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=98.75 E-value=1.3e-08 Score=86.29 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=57.1
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
..+++.+|..||+|++|+|+..|+..++..+ | ++..+++.+|..+|.|++|.|+|+||+.++
T Consensus 41 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 107 (109)
T 1bu3_A 41 ADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALV 107 (109)
T ss_dssp HHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 5689999999999999999999999999966 4 778889999999999999999999999876
No 322
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=98.75 E-value=1.7e-08 Score=82.86 Aligned_cols=65 Identities=25% Similarity=0.481 Sum_probs=59.1
Q ss_pred HHHHHHHHhHhC-CCCCC-cccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCD-KKGTG-QIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++.+|..|| ++++| +|+..||..+++. +| ++..++..+|..+|.|++|.|+|+||+.++...
T Consensus 8 ~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~ 81 (93)
T 1k2h_A 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (93)
T ss_dssp HHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 467899999999 79999 9999999999986 55 677888999999999999999999999998765
No 323
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=98.74 E-value=2.2e-08 Score=91.03 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=61.8
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~ 69 (593)
..++.+|..+|+|++|+|+..|+..++..+|++..++..+|..+|.|++|.|+|+||+.++..++.
T Consensus 98 ~~~~~~F~~~D~d~~G~i~~~E~~~~l~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~ 163 (166)
T 3akb_A 98 PFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAFARYFT 163 (166)
T ss_dssp HHHHHHHHHHCSSSSSCCBHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSBCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhc
Confidence 348999999999999999999999999999999999999999999999999999999999987754
No 324
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.73 E-value=1.2e-08 Score=100.29 Aligned_cols=108 Identities=6% Similarity=0.022 Sum_probs=72.0
Q ss_pred cCCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHH---HHHHHHHHH-cCCCCcEEEEEeC-CCCCCccccccccccC
Q psy8073 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK---NWVEAVEEV-TENSIPIVICANK-VDLRADAQAKGVKCID 522 (593)
Q Consensus 448 TaG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~---~~~~~i~~~-~~~~~piivV~NK-~Dl~~~~~~~~~~~v~ 522 (593)
.+||..++..++.||.++|++|||+|++|..-++... .+...+... ...++|++|++|| .|+... .+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--------ms 265 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------MP 265 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--------CC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--------CC
Confidence 3568888999999999999999999999986543222 111223222 1356999999996 588654 22
Q ss_pred HHHHH-HHHH---HhCCeEEEEcCCCCCCHHHHHHHHHHHHHhhc
Q psy8073 523 REVGE-KLAQ---QYGAIFMETSSKSGDNILDALIALSRHVYVFI 563 (593)
Q Consensus 523 ~~~~~-~l~~---~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~~~ 563 (593)
..++. .+.- .....+..|||++|.|+.+.++||+..+..+.
T Consensus 266 ~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 266 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 22221 1110 12345899999999999999999999886543
No 325
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=98.73 E-value=4e-08 Score=90.99 Aligned_cols=136 Identities=10% Similarity=0.124 Sum_probs=92.4
Q ss_pred HHHHHHHHhHh-CCCCCCcccHHHHHHHHHcCC------CCHHHHHHH-----------HHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTC-DKKGTGQIGPEEFRELCTGFD------IQPTDSDAI-----------FADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~-D~d~~G~I~~~el~~~l~~l~------l~~~e~~~i-----------~~~~D~d~~G~i~~~eF~~~~ 64 (593)
..+++.+|..+ |.|++|+|+..|+..++..++ .+..++..+ |..+|.|++|.|+|+||+.++
T Consensus 7 ~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~ 86 (185)
T 2sas_A 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMW 86 (185)
T ss_dssp HHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHH
T ss_pred HHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHHHHHH
Confidence 45789999999 999999999999999998544 555566544 999999999999999999998
Q ss_pred HHHhhhhhhh--------hcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCC
Q psy8073 65 REFLNSDARR--------LKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNC 136 (593)
Q Consensus 65 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~ 136 (593)
.......... ......+...+.. ..+......|..++..+| . +.+++..++..+ +.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d---~dG~Is~~E~~~~l~~~g--~-------~~~~~~~~~~~~--D~d- 151 (185)
T 2sas_A 87 EKTIATCKSVADLPAWCQNRIPFLFKGMDVS---GDGIVDLEEFQNYCKNFQ--L-------QCADVPAVYNVI--TDG- 151 (185)
T ss_dssp HHHHHTCCSGGGSCTTHHHHHHHHHHHHCTT---SSSCCCHHHHHHHTTSSC--C-------CCSSHHHHHHHH--HTT-
T ss_pred HHHhccccchhhhhHHHHHHHHHHHHHHcCC---CCCeEcHHHHHHHHHHhC--C-------CHHHHHHHHHHh--cCC-
Confidence 7764321000 0011111112221 122233345777776665 2 567899999998 444
Q ss_pred CchhhhhHHHHHHHHHH
Q psy8073 137 PEIVTHFEGALSSLLDD 153 (593)
Q Consensus 137 p~ll~~~E~~i~~~~~~ 153 (593)
..+..+|++|+..+..-
T Consensus 152 ~dG~i~~~ef~~~~~~~ 168 (185)
T 2sas_A 152 GKVTFDLNRYKELYYRL 168 (185)
T ss_dssp TTSCCSHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHH
Confidence 34557899998876543
No 326
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=98.72 E-value=2.9e-08 Score=88.92 Aligned_cols=63 Identities=30% Similarity=0.563 Sum_probs=57.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
...++.+|..||++++|+|+..+|..++..+| +++.+++.+|..+|.|++|.|+|+||+.+|.
T Consensus 82 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1exr_A 82 EEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV 146 (148)
T ss_dssp HHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence 35788999999999999999999999999776 7788999999999999999999999998874
No 327
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=98.72 E-value=1.4e-08 Score=82.67 Aligned_cols=64 Identities=19% Similarity=0.398 Sum_probs=58.5
Q ss_pred HHHHHHHhHhC-CCCCC-cccHHHHHHHHHc---CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCD-KKGTG-QIGPEEFRELCTG---FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~---l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
.+++.+|..|| ++++| +|+..|+..+++. +| ++..+++.+|..+|.|++|.|+|+||+.++..+
T Consensus 10 ~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 80 (90)
T 1k8u_A 10 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGAL 80 (90)
T ss_dssp HHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 57899999999 69999 9999999999997 77 667788999999999999999999999998764
No 328
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.72 E-value=5e-09 Score=84.91 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=55.2
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
.+++.+|..||++++|+|+..++..+++.+| ++..++..+|..+|.|++|.|+|+||+.++
T Consensus 23 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 85 (87)
T 1s6j_A 23 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAAT 85 (87)
T ss_dssp TTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSEECHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4578999999999999999999999999887 567788999999999999999999998653
No 329
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=98.71 E-value=1.5e-08 Score=92.43 Aligned_cols=133 Identities=13% Similarity=0.203 Sum_probs=87.1
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++.+|..+|.+++|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|.||+.++....... ........+
T Consensus 27 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~F 105 (166)
T 2aao_A 27 AGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKIE-REDHLFAAF 105 (166)
T ss_dssp HHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHHHHHCTTCCSSBCHHHHHHHHTTCHHHH-TTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhcc-cHHHHHHHH
Confidence 4678999999999999999999999999776 5566788999999999999999999998875432111 111111122
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+... .+......|..++..+| . +.+++..++..+ +.+. .+..+|++|+..+.+
T Consensus 106 ~~~D~d~---~G~i~~~e~~~~l~~~~--~-------~~~~~~~~~~~~--d~~~-dg~i~~~eF~~~~~~ 161 (166)
T 2aao_A 106 TYFDKDG---SGYITPDELQQACEEFG--V-------EDVRIEELMRDV--DQDN-DGRIDYNEFVAMMQK 161 (166)
T ss_dssp HHHCTTC---SSSBCHHHHHHHTCC-----------------CCHHHHH--CTTC-SSSBCHHHHHHHHC-
T ss_pred HHhCCCC---CCcCcHHHHHHHHHHcC--C-------CHHHHHHHHHHh--CCCC-CCcEeHHHHHHHHHh
Confidence 2222221 22233445777776665 2 466788899888 4443 456789999887654
No 330
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=98.71 E-value=2.1e-08 Score=89.43 Aligned_cols=129 Identities=10% Similarity=0.084 Sum_probs=94.3
Q ss_pred HHHHHHHhHhCCCC-CCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 4 LQLEELFKTCDKKG-TGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 4 ~~l~~~F~~~D~d~-~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
.+++.+|..+|.|+ +|+|+..|+..+++.+|. +..++..+|..+|.+ |+|+||+.++................
T Consensus 14 ~~l~~~F~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~----i~~~eF~~~~~~~~~~~~~~~~l~~~ 89 (146)
T 2qac_A 14 VDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGDN----LTYEQYLEYLSICVHDKDNVEELIKM 89 (146)
T ss_dssp SCHHHHHHHHHHHCBTTBEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSE----ECHHHHHHHHHHTCCTTCCHHHHHHH
T ss_pred HHHHHHHHHhCccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC----CCHHHHHHHHHHHhcCcchHHHHHHH
Confidence 46899999999999 999999999999998874 556788999999877 99999999987643222111222223
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
+...+.. ..+......|..++..+|... +.+++..++..+ . . .+..+|++|+..+.
T Consensus 90 F~~~D~d---~~G~I~~~el~~~l~~~g~~~-------~~~~~~~~~~~~-d-~---dg~i~~~eF~~~l~ 145 (146)
T 2qac_A 90 FAHFDNN---CTGYLTKSQMKNILTTWGDAL-------TDQEAIDALNAF-S-S---EDNIDYKLFCEDIL 145 (146)
T ss_dssp HHTTCTT---CSSEEEHHHHHHHHHHSSSCC-------CHHHHHHHHHHH-C-S---SSEEEHHHHHHHHT
T ss_pred HHHhCCC---CCCCCCHHHHHHHHHHhCCCC-------CHHHHHHHHHHc-C-C---CCcCcHHHHHHHHh
Confidence 3333322 223334456888998888765 888999999988 2 3 56689999987653
No 331
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=98.70 E-value=2.9e-08 Score=94.40 Aligned_cols=66 Identities=21% Similarity=0.454 Sum_probs=61.1
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhh
Q psy8073 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSD 71 (593)
Q Consensus 6 l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~ 71 (593)
++.+|..||+|++|+|+.+|+..++..+|+++.+++.+|..+|.|++|.|+|+||+.++..++.+.
T Consensus 130 ~~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~~~ 195 (208)
T 2hpk_A 130 SNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLFRKFWMEP 195 (208)
T ss_dssp HHHHHHHHCTTCSSSBCHHHHHHHHHHTTSCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCC
Confidence 788999999999999999999999999999999999999999999999999999999998876443
No 332
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=98.69 E-value=3e-08 Score=89.76 Aligned_cols=64 Identities=30% Similarity=0.479 Sum_probs=59.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHH--HhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFA--DLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~--~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..||+|++|+|+..||..+|..+| ++..+++.+|. .+|.|++|.|+|+||+.+|..
T Consensus 84 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 151 (159)
T 2ovk_C 84 ADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151 (159)
T ss_dssp HHHHHHHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHHHHhc
Confidence 56799999999999999999999999999877 78889999999 889999999999999999865
No 333
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=98.69 E-value=4.4e-08 Score=89.87 Aligned_cols=134 Identities=12% Similarity=0.206 Sum_probs=91.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC----CCHH--H-H--------HHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD----IQPT--D-S--------DAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~----l~~~--e-~--------~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++.+|..+|.|++|+|+..|+..++..++ .+++ + + ..+|..+| ++|.|+|+||+.++...
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D--~~g~i~~~EF~~~~~~~ 82 (174)
T 1q80_A 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA--GGKGIDETTFINSMKEM 82 (174)
T ss_dssp HHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT--TTSCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC--CCCeEcHHHHHHHHHHH
Confidence 35789999999999999999999999999665 5544 3 4 25788888 89999999999998776
Q ss_pred hhhhh----hhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhh
Q psy8073 68 LNSDA----RRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHF 143 (593)
Q Consensus 68 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~ 143 (593)
..... ........+...+... .+......|..++..+| . +.+++..++..+ +.+ ..+..+|
T Consensus 83 ~~~~~~~~~~~~~~~~~F~~~D~d~---~G~i~~~e~~~~l~~~g--~-------~~~~~~~~~~~~--D~d-~dg~i~~ 147 (174)
T 1q80_A 83 VKNPEAKSVVEGPLPLFFRAVDTNE---DNNISRDEYGIFFGMLG--L-------DKTMAPASFDAI--DTN-NDGLLSL 147 (174)
T ss_dssp TTSTTCHHHHHTHHHHHHHHHCTTS---SSSBCHHHHHHHHHHHT--C-------CGGGHHHHHHHH--CTT-CSSSBCH
T ss_pred cCcccHHHHHHHHHHHHHHHhCCCC---CCcccHHHHHHHHHHcC--C-------CHHHHHHHHHHh--CCC-CCceEeH
Confidence 43110 0011111222222221 22233445888887775 3 667899999999 543 3556789
Q ss_pred HHHHHHHHHH
Q psy8073 144 EGALSSLLDD 153 (593)
Q Consensus 144 E~~i~~~~~~ 153 (593)
++|+..+..-
T Consensus 148 ~ef~~~~~~~ 157 (174)
T 1q80_A 148 EEFVIAGSDF 157 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877653
No 334
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=98.69 E-value=1.4e-08 Score=94.87 Aligned_cols=134 Identities=17% Similarity=0.226 Sum_probs=92.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC-----------C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF-----------D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-----------~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~ 69 (593)
..+++.+|..+|.|++|+|+..|+..++..+ + .+..++..+|..+|.|++|.|+|+||+.++.....
T Consensus 39 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~~~~~~ 118 (191)
T 3khe_A 39 TKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQL 118 (191)
T ss_dssp THHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTCTTCSSSEEHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhcc
Confidence 3579999999999999999999999999865 3 34556779999999999999999999998743211
Q ss_pred hhhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q psy8073 70 SDARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSS 149 (593)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~ 149 (593)
.. ........+...+... .+......|..++. |... +.+++..++..+ +.+ ..+..+|++|+..
T Consensus 119 ~~-~~~~~~~~F~~~D~d~---~G~I~~~E~~~~l~--~~~~-------~~~~~~~~~~~~--D~~-~dg~i~~~eF~~~ 182 (191)
T 3khe_A 119 LL-SRERLLAAFQQFDSDG---SGKITNEELGRLFG--VTEV-------DDETWHQVLQEC--DKN-NDGEVDFEEFVEM 182 (191)
T ss_dssp HC-CHHHHHHHHHHHCTTC---SSEECHHHHHHHTT--SSCC-------CHHHHHHHHHHH--CTT-CSSSEEHHHHHHH
T ss_pred cc-hHHHHHHHHHHHCCCC---cCcCCHHHHHHHHc--cCCC-------CHHHHHHHHHHh--CCC-CCCCCCHHHHHHH
Confidence 11 1111111222222221 22233345666665 4333 788899999999 544 3566789999887
Q ss_pred HHH
Q psy8073 150 LLD 152 (593)
Q Consensus 150 ~~~ 152 (593)
+..
T Consensus 183 ~~~ 185 (191)
T 3khe_A 183 MQK 185 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 335
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A
Probab=98.69 E-value=3.4e-08 Score=82.09 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=58.2
Q ss_pred HHHHHHHHhHhC-CCCCC-cccHHHHHHHHH-cC------CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCD-KKGTG-QIGPEEFRELCT-GF------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~-~l------~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++.+|..|| ++++| +|+..||..++. .+ .++..+++.+|..+|.|++|.|+|+||+.++...
T Consensus 12 ~~~l~~~F~~~Dd~d~~G~~I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~~~~ 85 (99)
T 1qls_A 12 IESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGL 85 (99)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCeeCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 347899999998 99999 999999999998 44 3778889999999999999999999999988664
No 336
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=98.68 E-value=3.3e-08 Score=90.23 Aligned_cols=64 Identities=23% Similarity=0.351 Sum_probs=59.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..||.|++|+|+..||..+|..+| +++.+++.+|..+|.|++|.|+|+||+.+|..
T Consensus 94 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~~ 159 (166)
T 2mys_B 94 EDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITH 159 (166)
T ss_pred HHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHHh
Confidence 46789999999999999999999999999776 78889999999999999999999999999865
No 337
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Probab=98.67 E-value=1e-08 Score=85.90 Aligned_cols=64 Identities=11% Similarity=0.268 Sum_probs=56.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHc-----CC----CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTG-----FD----IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-----l~----l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..+++++|..||.+ +|+|+..||+.+++. +| ++..+++.||..+|.|+||.|+|+||+.++...
T Consensus 9 ~~~l~~~F~~fD~~-~g~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~ 81 (100)
T 1psr_A 9 IIGMIDMFHKYTRR-DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDI 81 (100)
T ss_dssp HHHHHHHHHHTCCT-TSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCeECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45899999999977 799999999999985 33 456678899999999999999999999998764
No 338
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=98.67 E-value=5.3e-08 Score=92.29 Aligned_cols=144 Identities=14% Similarity=0.163 Sum_probs=95.7
Q ss_pred CHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccc
Q psy8073 2 SDLQLEELFKTCDKK-GTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSN 78 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~ 78 (593)
+.++++++|..||.+ ++|+|+..|+..+++.+|. +...+..+|..+|.|++|.|+|+||+.++....... ......
T Consensus 20 ~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~~~-~~~~~~ 98 (204)
T 1jba_A 20 DAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGT-LEHKLK 98 (204)
T ss_dssp HHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHHSSCC-CTHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHHccCC-HHHHHH
Confidence 457899999999999 8999999999999998874 455778999999999999999999999987653211 111111
Q ss_pred ccCCCCCCCCCCCCCchhhhHHHHHHHhh----hhhh--h----hhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHH
Q psy8073 79 VNAGAMSSEGPERRNSDVQNAWSLLLAGI----GEAN--V----HKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALS 148 (593)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g~~~--~----~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~ 148 (593)
..+...+... .+......|..++..+ |... . .+.-....+++..+|..+ +.+. .+..+|++|+.
T Consensus 99 ~~F~~~D~d~---~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~--D~d~-dG~Is~~Ef~~ 172 (204)
T 1jba_A 99 WTFKIYDKDR---NGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLV--DENG-DGQLSLNEFVE 172 (204)
T ss_dssp HHHHHHCSSC---SSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHH--CCSC-CSCBCHHHHHH
T ss_pred HHHHHhCCCC---CCcCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHHHHHHHHHh--CCCC-CCeEcHHHHHH
Confidence 1222222221 2223334577777666 3110 0 000001456799999999 5543 45578999988
Q ss_pred HHHH
Q psy8073 149 SLLD 152 (593)
Q Consensus 149 ~~~~ 152 (593)
.+.+
T Consensus 173 ~~~~ 176 (204)
T 1jba_A 173 GARR 176 (204)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 7653
No 339
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=98.67 E-value=2.6e-08 Score=92.25 Aligned_cols=70 Identities=27% Similarity=0.474 Sum_probs=64.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA 72 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 72 (593)
...++.+|..+|+|++|+|+.+|+..++..+|++..++..+|..+|.|++|.|+|+||+.++..++.+..
T Consensus 104 ~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~~~s~~ 173 (185)
T 2sas_A 104 QNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRLLTSPA 173 (185)
T ss_dssp HHHHHHHHHHHCTTSSSCCCHHHHHHHTTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHhcCCC
Confidence 3678999999999999999999999999999999999999999999999999999999999998875543
No 340
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.67 E-value=2.2e-08 Score=105.22 Aligned_cols=115 Identities=16% Similarity=0.259 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCC--CccceeeEEEEEEECCe--eEEEEEEecCCchhh--------------
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLG--STLGVDFQMKTIRVDER--NVALQLWDTAGQERF-------------- 454 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~--~t~g~~~~~~~~~~~~~--~~~~~l~DTaG~e~~-------------- 454 (593)
++|+|+|++|||||||+|.|++..+.+... ...+.......+.+... ...+.++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 569999999999999999999875433211 12233333233322222 236899999984211
Q ss_pred hhh----hHhh---------ccCC--C-EEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCc
Q psy8073 455 RSM----TKNY---------FRRA--D-GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512 (593)
Q Consensus 455 ~~~----~~~~---------~~~a--d-~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~ 512 (593)
... ...+ +..+ | +++++.|+..+.+..++. .+..+. .++|+|+|.||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die----ilk~L~-~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV----TMKKLD-SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH----HHHHTC-SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH----HHHHHh-hCCCEEEEEcchhccch
Confidence 011 1111 1222 2 466777877665555432 334443 56899999999997643
No 341
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=98.67 E-value=2.3e-08 Score=84.11 Aligned_cols=61 Identities=21% Similarity=0.372 Sum_probs=53.1
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHc-----CCCCHH-------------HHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTG-----FDIQPT-------------DSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~-----l~l~~~-------------e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
.++.+|..||+|++|+|+..||..++.. +|..+. .+..+|..+|.|+||.|+|+||+.++.
T Consensus 21 ~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 99 (103)
T 1snl_A 21 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQ 99 (103)
T ss_dssp CHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHh
Confidence 5789999999999999999999999985 464332 367899999999999999999998874
No 342
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=98.66 E-value=2.4e-08 Score=102.19 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=96.3
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHH-HHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA-IFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAG 82 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~-i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 82 (593)
..++.+|..||.+++|+|+..+|..+|.+.+++..++.. +|..+|.|++|.|+|++|+.++.... .....+.
T Consensus 188 ~~l~~~F~~~D~d~dG~Is~~El~~~l~g~~~~~~ei~~~l~~~~D~d~dG~Is~~EF~~~l~~~~-------~l~~~F~ 260 (323)
T 1ij5_A 188 AALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLL-------VLRILYA 260 (323)
T ss_dssp HTSCCCHHHHCTTCCSEECHHHHHHHHHHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCEEeHHHHHHHHHHHH-------HHHHHHH
Confidence 346678999999999999999999999555577888999 99999999999999999999986642 1111122
Q ss_pred CCCCCCCCCCCchhhhHHHHHH-HhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 83 AMSSEGPERRNSDVQNAWSLLL-AGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l-~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
..+.. ..+......|..++ ..+|... +.+++..++..+ +.+ ..+..+|++|+..+.+
T Consensus 261 ~~D~d---~dG~Is~~El~~~l~~~~g~~l-------s~~e~~~l~~~~--D~d-~dG~Is~~EF~~~~~~ 318 (323)
T 1ij5_A 261 FADFD---KSGQLSKEEVQKVLEDAHIPES-------ARKKFEHQFSVV--DVD-DSKSLSYQEFVMLVLL 318 (323)
T ss_dssp HTCSS---SCSSEEHHHHHHHHHHTTCCGG-------GCSTHHHHHHHH--TTT-TCSEECHHHHHHHHHH
T ss_pred HhCCC---CCCCccHHHHHHHHHHHcCCCC-------CHHHHHHHHHHH--CCC-CCCcEeHHHHHHHHHH
Confidence 22221 12233445688888 8888765 778899999999 443 4566799999987764
No 343
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=98.66 E-value=5.2e-08 Score=90.94 Aligned_cols=143 Identities=13% Similarity=0.188 Sum_probs=95.8
Q ss_pred CHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcC---CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcc
Q psy8073 2 SDLQLEELFKTCDKK-GTGQIGPEEFRELCTGF---DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKS 77 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l---~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~ 77 (593)
+..+++.+|..||.+ ++|+|+..|+..++..+ +.+...+..+|..+|.|++|.|+|.||..++....... .....
T Consensus 23 ~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~-~~~~~ 101 (190)
T 1g8i_A 23 TEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGT-LDEKL 101 (190)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHCC-HHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCeEeHHHHHHHHHHhcCCC-HHHHH
Confidence 578899999999998 89999999999999976 67777888999999999999999999999987653221 11111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhh----hhhhhh--hccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGI----GEANVH--KFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g~~~~~--~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
...+...+.. ..+......|..++..+ |...-. +. ..+.+++..+|..+ +.+. .+..+|++|+..+.
T Consensus 102 ~~~f~~~D~d---~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~-~~~~~~~~~~f~~~--D~d~-dG~i~~~ef~~~~~ 174 (190)
T 1g8i_A 102 RWAFKLYDLD---NDGYITRNEMLDIVDAIYQMVGNTVELPEEE-NTPEKRVDRIFAMM--DKNA-DGKLTLQEFQEGSK 174 (190)
T ss_dssp HHHHHHHCTT---CSSEEEHHHHHHHHHHHHHHC-----CCGGG-SSHHHHHHHHHHHH--CSSC-SSEEEHHHHHHHHH
T ss_pred HHHHHhhcCC---CCCeECHHHHHHHHHHHHHHhCCccCCcccc-ccHHHHHHHHHHHh--cCCC-CCcEeHHHHHHHHH
Confidence 1222222222 12223344577777653 321000 00 01567899999999 5443 45568999888665
Q ss_pred H
Q psy8073 152 D 152 (593)
Q Consensus 152 ~ 152 (593)
.
T Consensus 175 ~ 175 (190)
T 1g8i_A 175 A 175 (190)
T ss_dssp H
T ss_pred h
Confidence 4
No 344
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=98.66 E-value=2e-08 Score=89.08 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=59.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..+|+|++|+|+..|+..++..+| ++..+++.+|..+|.|++|.|+|+||+.+|..
T Consensus 75 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 140 (143)
T 3j04_B 75 EDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKH 140 (143)
T ss_dssp HHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHTTCCSSSCCCSTHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHhc
Confidence 56899999999999999999999999999777 77888999999999999999999999998853
No 345
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=98.65 E-value=4.4e-08 Score=88.40 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=58.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..+++.+|..||+|++|+|+..||..+++.+| ++..+++.+|..+|.|++|.|+|+||+.++..
T Consensus 49 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~~~~~ 114 (150)
T 2jjz_A 49 LTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLG 114 (150)
T ss_dssp HHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSCSSBCHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHH
Confidence 46789999999999999999999999999887 66778899999999999999999999998864
No 346
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.65 E-value=4.2e-08 Score=87.01 Aligned_cols=64 Identities=22% Similarity=0.492 Sum_probs=59.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..+|+|++|+|+..++..++..+| ++..+++.+|..+|.|++|.|+|+||+.++..
T Consensus 75 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 140 (145)
T 2bl0_B 75 SKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLVT 140 (145)
T ss_dssp HHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHHHh
Confidence 46889999999999999999999999999887 77888999999999999999999999999864
No 347
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=98.65 E-value=4.6e-08 Score=91.63 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=55.4
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh
Q psy8073 8 ELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA 72 (593)
Q Consensus 8 ~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 72 (593)
.+|..||+|++|+|+..||..++..+| ++..+++.+|..+|.|++|.|+|+||+.++..++.+.+
T Consensus 117 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~s~d 183 (195)
T 1qv0_A 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYTLD 183 (195)
T ss_dssp HHHHHTC----CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHccCCC
Confidence 899999999999999999999999766 67888999999999999999999999999998875543
No 348
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=98.64 E-value=2.6e-08 Score=82.74 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=56.1
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHc-----CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTG-----FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-----l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+++++|..||. ++|+|+..||+.+|+. +| ++..+++.|+..+|.|+||.|+|+||+.++....
T Consensus 8 ~~~l~~~F~~fD~-~dg~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~ 79 (96)
T 1a4p_A 8 METMMFTFHKFAG-DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLT 79 (96)
T ss_dssp HHHHHHHHHHHHG-GGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCeECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4689999999994 5679999999999974 33 5777899999999999999999999999987653
No 349
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=98.64 E-value=4.8e-08 Score=87.85 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=58.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..+++.+|..||+|++|+|+..||..+++.+| ++..++..+|..+|.|++|.|+|+||+.++..
T Consensus 47 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~~~~~ 112 (147)
T 1wy9_A 47 LEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLG 112 (147)
T ss_dssp HHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCTTEECHHHHHHHHCS
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 35789999999999999999999999999887 56778899999999999999999999998854
No 350
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=98.64 E-value=3.7e-08 Score=87.88 Aligned_cols=63 Identities=19% Similarity=0.446 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
...++.+|..+|+|++|+|+..++..++..+| ++..++..+|..+|.|++|.|+|+||+.+|.
T Consensus 82 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1m45_A 82 TEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL 146 (148)
T ss_dssp THHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 46789999999999999999999999999777 6788899999999999999999999998874
No 351
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=98.63 E-value=2.2e-07 Score=87.23 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=34.7
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
.++.+|..+|+|++|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|+||+.++.
T Consensus 94 ~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 156 (191)
T 1y1x_A 94 SMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSI 156 (191)
T ss_dssp HHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence 445555566666666666666665555444 4455555566666665566666666655543
No 352
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=98.63 E-value=7e-08 Score=89.99 Aligned_cols=65 Identities=20% Similarity=0.349 Sum_probs=59.5
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh
Q psy8073 8 ELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA 72 (593)
Q Consensus 8 ~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 72 (593)
.+|..+|+|++|+|+..|+..++..+| ++..+++.+|..+|.|++|.|+|+||+.++..++.+.+
T Consensus 113 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~~~~~~s~d 179 (191)
T 1uhk_A 113 ALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTMD 179 (191)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999766 67888999999999999999999999999998875543
No 353
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=98.63 E-value=3.2e-08 Score=93.34 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=96.2
Q ss_pred CHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcCCCCHH---HHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcc
Q psy8073 2 SDLQLEELFKTCDKK-GTGQIGPEEFRELCTGFDIQPT---DSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKS 77 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~l~~~---e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~ 77 (593)
+.++++.+|..||.+ ++|+|+..+|..+++.+|.++. .+..+|..+|.|++|.|+|.||+.++..+.... .....
T Consensus 12 ~~~el~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~~~~~~~~~-~~~~~ 90 (198)
T 2r2i_A 12 SATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGK-VDQKL 90 (198)
T ss_dssp HTSCHHHHHHHHHHHCTTSEECHHHHHHHHTCCSCCHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHSSCC-HHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHccCc-hHHHH
Confidence 346789999999998 8999999999999999998764 367999999999999999999999987653211 11111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhh--hhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANV--HKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~--~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+...+... .+......|..++..++.... ... ...+.+..+|..+ +.+ ..+..+|++|+..+.+
T Consensus 91 ~~~F~~~D~d~---~G~I~~~Ef~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~--D~d-~dG~I~~~Ef~~~~~~ 159 (198)
T 2r2i_A 91 RWYFKLYDVDG---NGCIDRGELLNIIKAIRAINRCNEAM--TAEEFTNMVFDKI--DIN-GDGELSLEEFMEGVQK 159 (198)
T ss_dssp HHHHHHHCTTC---SSCEEHHHHHHHHHHTTGGGGSSSCC--CHHHHHHHHHHHH--CTT-CSSEECHHHHHHHHTT
T ss_pred HHHHHHhcCCC---CCcCcHHHHHHHHHHHHhhcCCCchh--hHHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHHc
Confidence 12222222221 222334458888877753110 000 1234588999998 544 3456789999887653
No 354
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}
Probab=98.62 E-value=3.3e-08 Score=92.10 Aligned_cols=64 Identities=23% Similarity=0.390 Sum_probs=56.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHH-cCCCC---------HHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCT-GFDIQ---------PTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~-~l~l~---------~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.++++.+|..||+|++|+|+..||..+++ .+|.+ ..+++.+|..+|.|+||.|+|+||+.++..
T Consensus 97 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~ 170 (179)
T 3a8r_A 97 DNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQ 170 (179)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccccccccccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 46799999999999999999999999998 77754 456789999999999999999999999865
No 355
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=98.62 E-value=1.5e-07 Score=87.25 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=41.0
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcC----C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGF----D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l----~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
+++.+|..|| |++|+|+..||+.+++.+ | ++..+++.|+..+| |++|.|+|+||+.++.
T Consensus 77 ~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d-d~dG~I~~~EF~~~~~ 141 (174)
T 2i7a_A 77 HYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSVGRVSFPSLVCFLM 141 (174)
T ss_dssp HHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS-CTTSEECHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc-CCCCeEcHHHHHHHHH
Confidence 5667777777 777777777777777766 5 44556667777777 7777777777776654
No 356
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=98.61 E-value=2.8e-08 Score=94.91 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=90.9
Q ss_pred CHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcCCCCHH---HHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcc
Q psy8073 2 SDLQLEELFKTCDKK-GTGQIGPEEFRELCTGFDIQPT---DSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKS 77 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~l~~~---e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~ 77 (593)
+.++++.+|..||.+ ++|+|+..||..+++.+|.++. ++..+|..+|.|++|.|+|+||+.++....... .....
T Consensus 17 s~~ei~~~f~~fD~~~~~G~is~~El~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~-~~~~l 95 (211)
T 2ggz_A 17 PTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEK-MEQKL 95 (211)
T ss_dssp -------CCCSHHHHCTTSEEEHHHHHHHTTCCSCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHSCSS-HHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhccCc-hHHHH
Confidence 567899999999998 8999999999999999998754 367999999999999999999999987653211 11111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhh-hhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANV-HKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~-~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+...+... .+......|..++..++.... ... ...+.+..++..+ +.+ ..+..+|++|+..+.+
T Consensus 96 ~~~F~~~D~d~---~G~I~~~E~~~~l~~~~~~~~~~~~--~~~~~~~~~f~~~--D~d-~dG~I~~~Ef~~~~~~ 163 (211)
T 2ggz_A 96 KWYFKLYDADG---NGSIDKNELLDMFMAVQALNGQQTL--SPEEFINLVFHKI--DIN-NDGELTLEEFINGMAK 163 (211)
T ss_dssp HHHHHHHCTTC---SSSBCHHHHHHHHHHHTTSSCCCSC--THHHHHHHHHHHH--CTT-CSSSBCHHHHHHHHHT
T ss_pred HHHHHHhcCCC---CCcCcHHHHHHHHHHHHhhcCCccc--cHHHHHHHHHHHh--CCC-CCCCCcHHHHHHHHHh
Confidence 22222222222 222233457888877752100 010 1335589999998 544 3456789999887764
No 357
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=98.61 E-value=8.3e-08 Score=86.70 Aligned_cols=64 Identities=20% Similarity=0.410 Sum_probs=57.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..+|++++|+|+.+||..++..+| ++..+++.+|..+|.|++|.|+|+||+.+|..
T Consensus 95 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 160 (161)
T 3fwb_A 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAICTD 160 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 46788999999999999999999999999776 77888899999999999999999999988753
No 358
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.60 E-value=9.6e-08 Score=99.38 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=74.2
Q ss_pred CchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHH
Q psy8073 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKL 529 (593)
Q Consensus 450 G~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l 529 (593)
..++|.+....+++.+|++|+|||++++. ..|...+..... ++|+++|+||+|+..... ......+....+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~~---~~~~~~~~l~~~ 125 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKSV---KHDKVKHWMRYS 125 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTTS---CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCccc---CHHHHHHHHHHH
Confidence 46899999999999999999999999853 456666666544 589999999999964310 000111222334
Q ss_pred HHHhCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 530 AQQYGA---IFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 530 ~~~~~~---~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
+...+. .++.+||++|.|+++++..|.+..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 556676 789999999999999999987643
No 359
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=98.60 E-value=7.7e-08 Score=86.68 Aligned_cols=64 Identities=33% Similarity=0.452 Sum_probs=59.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHH--hCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFAD--LDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~--~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..+|++++|+|+..+|..++..+| ++..++..+|.. +|.|++|.|+|+||+.++..
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 150 (156)
T 1wdc_C 83 FADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA 150 (156)
T ss_dssp HHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHhc
Confidence 57899999999999999999999999999877 778889999999 99999999999999999865
No 360
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=98.59 E-value=5.5e-08 Score=84.70 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=84.8
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHcCCCC--HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhh--hhhhhccccc
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ--PTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNS--DARRLKSNVN 80 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~--~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~--~~~~~~~~~~ 80 (593)
+++.+|..+|.+++|+|+..|+..++..+|.+ ..++..+|..+|.|++|.|+|+||..++...... ..........
T Consensus 1 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T 1jfj_A 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVL 80 (134)
T ss_dssp CHHHHHHHHCTTCSSEEEHHHHHHHHHTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 36889999999999999999999999988754 4467799999999999999999999987411000 0000001111
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
+...+.. ..+......|..++..+|... +..++..+ +.+ ..+..+|++|+..+
T Consensus 81 f~~~D~d---~~G~i~~~e~~~~l~~~~~~~-----------~~~~~~~~--D~~-~dg~i~~~ef~~~l 133 (134)
T 1jfj_A 81 YKLMDVD---GDGKLTKEEVTSFFKKHGIEK-----------VAEQVMKA--DAN-GDGYITLEEFLEFS 133 (134)
T ss_dssp HHHHCCS---SSSEEEHHHHHHHHTTTTCHH-----------HHHHHHHH--HCS-SSSEEEHHHHHHHH
T ss_pred HHHHCCC---CCCccCHHHHHHHHHHhCHHH-----------HHHHHHHh--CCC-CCCcEeHHHHHHHh
Confidence 1111111 122233445777776665421 77788888 433 24456899888654
No 361
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=98.59 E-value=9.7e-08 Score=88.71 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=93.9
Q ss_pred HHHHHHHhHhCC-----CC-C--CcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHHhhhhhhh
Q psy8073 4 LQLEELFKTCDK-----KG-T--GQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGK-VSLEDFAYGFREFLNSDARR 74 (593)
Q Consensus 4 ~~l~~~F~~~D~-----d~-~--G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~-i~~~eF~~~~~~~~~~~~~~ 74 (593)
.+++.+|..+|. ++ + |+|+..||.. +..+|.++.. ..+|..+|.|++|. |+|+||+.++..+.......
T Consensus 20 ~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~~g~~~~~-~~l~~~~D~d~~G~~I~~~EF~~~~~~~~~~~~~~ 97 (183)
T 1dgu_A 20 LLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPFK-ERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPD 97 (183)
T ss_dssp HHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STTSSSCTTH-HHHHHHHSCSSSSCCCCHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHhCccccccccccccCcCcHHHHHH-HHhhhcCcHH-HHHHHHhCCCCCCCEecHHHHHHHHHHhcCCCCHH
Confidence 467889999999 68 8 9999999999 8888987664 57999999999999 99999999987654322211
Q ss_pred hcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhh-----hhhhhccccCchHHHH----HHHHHhcCCCCCchhhhhHH
Q psy8073 75 LKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGE-----ANVHKFLNTSGKKLAD----LYHELRTSSNCPEIVTHFEG 145 (593)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~-----~~~~~~~~~~~eev~~----l~~~l~~~~~~p~ll~~~E~ 145 (593)
......+...+.. ..+......+..++..+|. .. +.+++.. ++..+ +.+ ..+..+|++
T Consensus 98 ~~l~~~F~~~D~d---~~G~I~~~El~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--D~d-~dG~I~~~E 164 (183)
T 1dgu_A 98 IKSHYAFRIFDFD---DDGTLNREDLSRLVNCLTGEGEDTRL-------SASEMKQLIDNILEES--DID-RDGTINLSE 164 (183)
T ss_dssp HHHHHHHHHHCTT---CSSEEEHHHHHHHHHHHHSSSCCCHH-------HHHHHHHHHHHHHHHH--CTT-SSSEEEHHH
T ss_pred HHHHHHHHHhCCC---CCCcCCHHHHHHHHHHHhcccccCCC-------CHHHHHHHHHHHHHHh--CCC-CCCeEcHHH
Confidence 1222233323222 2233344568888888876 33 5667775 78777 443 355678999
Q ss_pred HHHHHHH
Q psy8073 146 ALSSLLD 152 (593)
Q Consensus 146 ~i~~~~~ 152 (593)
|+..+.+
T Consensus 165 F~~~~~~ 171 (183)
T 1dgu_A 165 FQHVISR 171 (183)
T ss_dssp HHHHHCS
T ss_pred HHHHHHh
Confidence 9886643
No 362
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=98.59 E-value=1e-07 Score=87.02 Aligned_cols=64 Identities=14% Similarity=0.376 Sum_probs=58.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..+|+|++|+|+.+|+..++..+| +++.+++.+|..+|.|++|.|+|+||+..+..
T Consensus 100 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 165 (169)
T 3qrx_A 100 REEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK 165 (169)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHh
Confidence 45788999999999999999999999999776 78889999999999999999999999998854
No 363
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=98.59 E-value=8.3e-08 Score=94.38 Aligned_cols=137 Identities=13% Similarity=0.108 Sum_probs=93.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC----C--CCHHHHHH----HHHHhCCCCCCcccHHHHHHHHHHH-----
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF----D--IQPTDSDA----IFADLDHDGDGKVSLEDFAYGFREF----- 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l----~--l~~~e~~~----i~~~~D~d~~G~i~~~eF~~~~~~~----- 67 (593)
..+++.+|..+|.+++|+|+..+|..++..+ | ++..++.. +|..+|.|++|.|+|+||+.++...
T Consensus 102 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~~~~~~~~~~ 181 (263)
T 2f33_A 102 CEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLL 181 (263)
T ss_dssp HHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTCSSSSSCBCHHHHHHHSCTTTCSHH
T ss_pred HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCCCCeEcHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999855 4 66777765 9999999999999999999887531
Q ss_pred -hh-hhhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhh----hhhhhccccCchHHHHHHHHHhcCCCCCchhh
Q psy8073 68 -LN-SDARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGE----ANVHKFLNTSGKKLADLYHELRTSSNCPEIVT 141 (593)
Q Consensus 68 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~----~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~ 141 (593)
.. ...........+...+.. ..+......|..++..+|. .. +.+++..++..+. +. +..+..
T Consensus 182 ~~~~~~~~~~~~~~~F~~~D~d---~~G~is~~El~~~l~~~~~~~~~~~-------~~~e~~~~~~~~~-D~-d~dG~i 249 (263)
T 2f33_A 182 KFQGIKMCGKEFNKAFELYDQD---GNGYIDENELDALLKDLCEKNKQEL-------DINNISTYKKNIM-AL-SDGGKL 249 (263)
T ss_dssp HHHHTCCCHHHHHHHHHHHCCS---SSSCEEHHHHHHHHHHHHHHCTTTC-------CTTTHHHHHHHHH-TT-SBTTEE
T ss_pred HhcCcchHHHHHHHHHHHhCCC---CCCcccHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHhh-cc-CCCCeE
Confidence 10 001111111222222222 2223344568888888876 33 7788988887731 33 345667
Q ss_pred hhHHHHHHHH
Q psy8073 142 HFEGALSSLL 151 (593)
Q Consensus 142 ~~E~~i~~~~ 151 (593)
+|++|+..+.
T Consensus 250 ~~~EF~~~~~ 259 (263)
T 2f33_A 250 YRTDLALILS 259 (263)
T ss_dssp CGGGTHHHHC
T ss_pred cHHHHHHHHh
Confidence 8999987654
No 364
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=98.59 E-value=1.2e-07 Score=85.72 Aligned_cols=64 Identities=23% Similarity=0.459 Sum_probs=58.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..+|.+++|+|+..++..++..+| ++..++..+|..+|.|++|.|+|+||+..+..
T Consensus 95 ~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 160 (162)
T 1top_A 95 EEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEG 160 (162)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhh
Confidence 45789999999999999999999999999877 78888999999999999999999999998853
No 365
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=98.59 E-value=1e-07 Score=88.95 Aligned_cols=67 Identities=24% Similarity=0.415 Sum_probs=61.6
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..+.++.+|..+|.|++|+|+.+|+..++...+++..++..+|..+|.|++|.|+|+||+..+..+.
T Consensus 121 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~ 187 (191)
T 3khe_A 121 SRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKIC 187 (191)
T ss_dssp CHHHHHHHHHHHCTTCSSEECHHHHHHHTTSSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCcCcCCHHHHHHHHccCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999999999997778899999999999999999999999999998764
No 366
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=98.58 E-value=1.2e-07 Score=88.00 Aligned_cols=145 Identities=15% Similarity=0.247 Sum_probs=95.7
Q ss_pred CCHHHHHHHHhHhCC-CCCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhc
Q psy8073 1 MSDLQLEELFKTCDK-KGTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLK 76 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~-d~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~ 76 (593)
++.++++++|..||. |++|+|+..++..++..+| .+..++..+|..+|.|++|.|+|+||+.++....... ....
T Consensus 15 ~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~-~~~~ 93 (183)
T 1s6c_A 15 FTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGT-VHEK 93 (183)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCC-HHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCC-HHHH
Confidence 367889999999998 8999999999999999775 4567788999999999999999999999987653221 1111
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhh----hhhhhhhcc-ccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGI----GEANVHKFL-NTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g~~~~~~~~-~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
....+...+... .+......|..++..+ |.......- ....+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 94 ~~~~f~~~D~d~---~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~--D~d-~dG~i~~~Ef~~~~~ 167 (183)
T 1s6c_A 94 LRWTFNLYDINK---DGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKM--DKN-KDGIVTLDEFLESXQ 167 (183)
T ss_dssp HHHHHHHHCTTC---SSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHH--CTT-CSSEECHHHHHHHTT
T ss_pred HHHHHHHhCCCC---CCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHh--CCC-CCCcEeHHHHHHHHh
Confidence 122222222221 2223344577777666 432100000 01237899999999 554 345678999987654
Q ss_pred H
Q psy8073 152 D 152 (593)
Q Consensus 152 ~ 152 (593)
.
T Consensus 168 ~ 168 (183)
T 1s6c_A 168 E 168 (183)
T ss_dssp S
T ss_pred c
Confidence 3
No 367
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=98.57 E-value=6.1e-08 Score=100.32 Aligned_cols=63 Identities=30% Similarity=0.588 Sum_probs=57.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
+++++++|..||+|++|+|+.+||+.+|..+| ++.++++.||..+|.|+||.|+|+||+.+|.
T Consensus 374 eeeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvkmMt 438 (440)
T 3u0k_A 374 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 438 (440)
T ss_dssp CHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHhC
Confidence 46799999999999999999999999999766 7888999999999999999999999998873
No 368
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=98.57 E-value=1e-07 Score=87.51 Aligned_cols=65 Identities=26% Similarity=0.582 Sum_probs=61.0
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
..++.+|..+|.|++|+|+..|+..++..+|++..++..+|..+|.|++|+|+|+||+.++..+.
T Consensus 102 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~ 166 (176)
T 1nya_A 102 PVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFH 166 (176)
T ss_dssp HHHHHHHHHTCSSCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHSCCS
T ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHh
Confidence 56899999999999999999999999999999999999999999999999999999999987653
No 369
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=98.57 E-value=6.5e-08 Score=95.12 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=92.5
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCH--------HHHHHHHHHhCCCCCCcccHHHHHHHHHHH------
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP--------TDSDAIFADLDHDGDGKVSLEDFAYGFREF------ 67 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~--------~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~------ 67 (593)
+..+++.+|..||+|++|+|+..||..+++.+|.++ ..+..+|..+|.|++|.|+|+||+..+...
T Consensus 14 ~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~l~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~ 93 (263)
T 2f33_A 14 TASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLL 93 (263)
T ss_dssp CHHHHHHHHHHHCTTCSSSBCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHTTGGGCCBCHHHHHHHTTSCTTHHHH
T ss_pred cHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHhhhhhHHHH
Confidence 457899999999999999999999999999877543 456799999999999999999999987432
Q ss_pred h--hhhhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhh----hhhhhhhccccCchHHHH----HHHHHhcCCCCC
Q psy8073 68 L--NSDARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGI----GEANVHKFLNTSGKKLAD----LYHELRTSSNCP 137 (593)
Q Consensus 68 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g~~~~~~~~~~~~eev~~----l~~~l~~~~~~p 137 (593)
+ ............+...+... .+......|..++..+ |... +.+++.. ++..+ +.+ .
T Consensus 94 ~~~~~~~~~~~l~~~F~~~D~d~---~G~i~~~el~~~l~~~~~~~g~~~-------~~~~~~~~~~~~~~~~--d~~-~ 160 (263)
T 2f33_A 94 FRCQQLKSCEEFMKTWRKYDTDH---SGFIETEELKNFLKDLLEKANKTV-------DDTKLAEYTDLMLKLF--DSN-N 160 (263)
T ss_dssp HGGGTSSCHHHHHHHHTTSSTTT---CSSBCHHHHHHHHHHHHHHHTSCC-------CHHHHHHHHHHHHHHT--CSS-S
T ss_pred HHHhhccHHHHHHHHHHHHCCCC---CCCcCHHHHHHHHHHHHhhcCCCC-------CHHHHHHHHHHHHHhc--CCC-C
Confidence 0 00111111122333333322 2223334577777776 4433 6667776 67666 333 3
Q ss_pred chhhhhHHHHHHHH
Q psy8073 138 EIVTHFEGALSSLL 151 (593)
Q Consensus 138 ~ll~~~E~~i~~~~ 151 (593)
.+..+|++|+..+.
T Consensus 161 dg~i~~~ef~~~~~ 174 (263)
T 2f33_A 161 DGKLELTEMARLLP 174 (263)
T ss_dssp SSCBCHHHHHHHSC
T ss_pred CCeEcHHHHHHHHH
Confidence 45678999987654
No 370
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=98.57 E-value=6.7e-08 Score=86.87 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=58.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..||+|++|+|+..||..+|..+| +++.+++.+|..+|. ++|.|+|+||+.+|..
T Consensus 84 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~I~~~eF~~~~~~ 148 (153)
T 2ovk_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPL-KNKQFNYNKMVDIKGK 148 (153)
T ss_dssp TTHHHHHHHTTCSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHHHHHCCE-ETTEECHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CCCEEeHHHHHHHHhc
Confidence 46799999999999999999999999999777 788899999999999 9999999999998864
No 371
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=98.56 E-value=1.6e-07 Score=89.13 Aligned_cols=142 Identities=14% Similarity=0.174 Sum_probs=95.6
Q ss_pred CHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcc
Q psy8073 2 SDLQLEELFKTCDKK-GTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKS 77 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~ 77 (593)
+..+++.+|..||.+ ++|+|+..||..++..++ .+..++..+|..+|.|++|.|+|+||+.++..+.... .....
T Consensus 31 ~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~~~-~~~~~ 109 (207)
T 2d8n_A 31 SEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGK-TNQKL 109 (207)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHSCSS-SSTTH
T ss_pred CHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHHcCCC-HHHHH
Confidence 578999999999998 799999999999999775 4566788999999999999999999999987652211 11111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhh----h----hhhhhhcc-ccCchHHHHHHHHHhcCCCCCchhhhhHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGI----G----EANVHKFL-NTSGKKLADLYHELRTSSNCPEIVTHFEGALS 148 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g----~~~~~~~~-~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~ 148 (593)
...+...+.. ..+......|..++..+ | ... .-- ....+++..+|..+ +.+ ..+..+|++|+.
T Consensus 110 ~~~f~~~D~d---~~G~I~~~E~~~~l~~~~~~~g~~~~~~l--~~~~~~~~~~~~~~f~~~--D~d-~dG~I~~~Ef~~ 181 (207)
T 2d8n_A 110 EWAFSLYDVD---GNGTISKNEVLEIVMAIFKMITPEDVKLL--PDDENTPEKRAEKIWKYF--GKN-DDDKLTEKEFIE 181 (207)
T ss_dssp HHHHHHHCTT---CSSEECHHHHHHHHHHHHHHSCHHHHHTS--CTTTSSHHHHHHHHHHHT--TCC-TTCCEEHHHHHH
T ss_pred HHHHHHhcCC---CCCeEcHHHHHHHHHHHHHHhccccCCCc--ccccccHHHHHHHHHHHc--CCC-CCCcCcHHHHHH
Confidence 1112212211 12223344577777665 5 222 000 00135799999988 544 345678999998
Q ss_pred HHHH
Q psy8073 149 SLLD 152 (593)
Q Consensus 149 ~~~~ 152 (593)
.+..
T Consensus 182 ~~~~ 185 (207)
T 2d8n_A 182 GTLA 185 (207)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 372
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=98.56 E-value=1e-07 Score=85.10 Aligned_cols=62 Identities=31% Similarity=0.588 Sum_probs=57.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHc-CC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTG-FD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
...++.+|..+|++++|+|+.+|+..++.. +| ++..+++.+|..+|.|++|.|+|+||+.+|
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 151 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 467899999999999999999999999986 55 788899999999999999999999999876
No 373
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=98.56 E-value=5.3e-08 Score=91.88 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=58.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..||.|++|+|+..+|..+| .+| ++..++..||..+|.|++|.|+|+||+.+|..
T Consensus 125 ~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~ 189 (196)
T 3dtp_E 125 EDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILTK 189 (196)
T ss_dssp HHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHHHHSSCEETTEECHHHHHHHHHSS
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHHHHHcCCCCCCEEeHHHHHHHHHc
Confidence 5689999999999999999999999999 888 78889999999999999999999999998853
No 374
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=98.56 E-value=1e-07 Score=84.77 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=57.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
...++.+|..+|++++|+|+..++..++..+| ++..++..+|.. |.|++|.|+|+||+.++.
T Consensus 84 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-d~~~dg~i~~~eF~~~~~ 147 (149)
T 2mys_C 84 FEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDSNGCINYEAFVKHIM 147 (149)
T ss_pred HHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh-CCCCCCcEeHHHHHHHHh
Confidence 46789999999999999999999999999877 778889999999 999999999999998875
No 375
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=98.55 E-value=1.8e-07 Score=101.15 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=88.5
Q ss_pred HHHHHHHhHhCCCCCCcccHHHH----HHHHHcCCCCHH---------HHHHHHHHhCCCCCCcccHHHHHHHHHHHhhh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEF----RELCTGFDIQPT---------DSDAIFADLDHDGDGKVSLEDFAYGFREFLNS 70 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el----~~~l~~l~l~~~---------e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~ 70 (593)
.+++++|..+|+|++|+|+.+|| ..+++.+|.+++ ++..+|..+|.|++|.|+|+||+.++......
T Consensus 335 ~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~~~~ 414 (484)
T 3nyv_A 335 KELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTL 414 (484)
T ss_dssp HHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHC----CGGGCSHHHHHHHHHHHHHHHTCCTTSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCceEeHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHhCCCCCCeEeHHHHHHHHHhcccc
Confidence 57899999999999999999999 555556675544 56799999999999999999999988664211
Q ss_pred hhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 71 DARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
. ........+...+... .+......|..++.. .. -+.+++..++..+ +.+ ..+..+|++|+..+
T Consensus 415 ~-~~~~~~~~F~~~D~d~---dG~I~~~El~~~l~~--~~-------~~~~~~~~~~~~~--D~d-~dG~i~~~Ef~~~~ 478 (484)
T 3nyv_A 415 L-SRERLERAFRMFDSDN---SGKISSTELATIFGV--SD-------VDSETWKSVLSEV--DKN-NDGEVDFDEFQQML 478 (484)
T ss_dssp H-HHHHHHHHHHHHCTTC---CSEEEHHHHHHHHHH--TT-------CCHHHHHHHHHHH--CTT-CCSEEEHHHHHHHH
T ss_pred C-cHHHHHHHHHHHCCCC---CCcCCHHHHHHHHHh--cC-------CCHHHHHHHHHHh--cCC-CCCcCCHHHHHHHH
Confidence 1 1111222333333322 222333456666644 11 2778899999999 554 34556899998876
Q ss_pred HH
Q psy8073 151 LD 152 (593)
Q Consensus 151 ~~ 152 (593)
.+
T Consensus 479 ~~ 480 (484)
T 3nyv_A 479 LK 480 (484)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 376
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=98.55 E-value=9.6e-08 Score=86.12 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..||+|++|+|+..+|..++..+| +++.+++.+|..+|.| +|.|+|+||+.+|..
T Consensus 86 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~~~ 150 (156)
T 1wdc_B 86 EETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIKG 150 (156)
T ss_dssp HHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHCCEE-TTEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-CCEEeHHHHHHHHhc
Confidence 56899999999999999999999999999776 7788999999999999 999999999998864
No 377
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=98.54 E-value=3.5e-08 Score=93.93 Aligned_cols=134 Identities=18% Similarity=0.284 Sum_probs=91.3
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh-----------
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA----------- 72 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~----------- 72 (593)
.+++.+|..+|.|++|+|+..||..++ .+|.++. .+.+|..+|.|++|.|+|+||+.++........
T Consensus 29 ~~l~~~F~~~D~d~dG~Is~~El~~~~-~lg~~~~-~~~l~~~~d~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~ 106 (208)
T 2ct9_A 29 TRLYSRFTSLDKGENGTLSREDFQRIP-ELAINPL-GDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPE 106 (208)
T ss_dssp HHHHHHHHHHCTTCSSEECTGGGGGCH-HHHTSTT-HHHHHHTTSCTTCSCEEHHHHHHHHHTTSCCC-----------C
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCCc-HHHHHHHHcCCCCCcCcHHHHHHHHHhhccccchhhhccccccc
Confidence 467889999999999999999999865 6666654 367999999999999999999998876431110
Q ss_pred ----hhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhh-hhhhhhhccccCchHHHHH----HHHHhcCCCCCchhhhh
Q psy8073 73 ----RRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGI-GEANVHKFLNTSGKKLADL----YHELRTSSNCPEIVTHF 143 (593)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-g~~~~~~~~~~~~eev~~l----~~~l~~~~~~p~ll~~~ 143 (593)
........+...+. ...+......|..++..+ |... +.+++..+ +..+ +.+ ..+..+|
T Consensus 107 ~~~~~~~~l~~~F~~~D~---d~dG~Is~~El~~~l~~~~g~~~-------s~~~~~~l~~~~~~~~--D~d-~dG~Is~ 173 (208)
T 2ct9_A 107 PLNSRSNKLHFAFRLYDL---DKDDKISRDELLQVLRMMVGVNI-------SDEQLGSIADRTIQEA--DQD-GDSAISF 173 (208)
T ss_dssp CTTSHHHHHHHHHHHHCT---TCSSEECHHHHHHHHHHHSCTTC-------CHHHHHHHHHHHHHHH--CSS-SSSSEEH
T ss_pred ccccHHHHHHHHHHHHCC---CCCCEEcHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHh--CCC-CCCcCcH
Confidence 00111111222221 122333445688888776 7654 77788887 8888 443 3566789
Q ss_pred HHHHHHHHH
Q psy8073 144 EGALSSLLD 152 (593)
Q Consensus 144 E~~i~~~~~ 152 (593)
++|+..+.+
T Consensus 174 ~EF~~~~~~ 182 (208)
T 2ct9_A 174 TEFVKVLEK 182 (208)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHhc
Confidence 999886544
No 378
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=98.54 E-value=1.4e-07 Score=83.79 Aligned_cols=61 Identities=28% Similarity=0.575 Sum_probs=54.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
...++.+|..+|++++|+|+.+++..++..+| +++.++..+|..+| |++|.|+|+||+..+
T Consensus 83 ~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~l 145 (147)
T 4ds7_A 83 EQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALL 145 (147)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHS-SSCSSEEHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHH
Confidence 35788899999999999999999999999776 77888889999999 999999999998876
No 379
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=98.54 E-value=7e-08 Score=91.22 Aligned_cols=64 Identities=22% Similarity=0.395 Sum_probs=56.3
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcC--C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGF--D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
.++.++.+|..||.|++|+|+.+||..++..+ | ++..+++.+|..+|.|++|.|+|+||+.+|.
T Consensus 127 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~ 194 (197)
T 3pm8_A 127 KKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMS 194 (197)
T ss_dssp SHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence 35688999999999999999999999999977 3 5667788999999999999999999999875
No 380
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=98.53 E-value=7e-08 Score=87.28 Aligned_cols=64 Identities=25% Similarity=0.476 Sum_probs=56.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..+|+|++|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|+||+.++..
T Consensus 94 ~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 159 (161)
T 1dtl_A 94 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 159 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHc
Confidence 45688999999999999999999999999777 77888899999999999999999999988753
No 381
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=98.53 E-value=3e-07 Score=88.76 Aligned_cols=145 Identities=15% Similarity=0.249 Sum_probs=97.6
Q ss_pred CCHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhc
Q psy8073 1 MSDLQLEELFKTCDKK-GTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLK 76 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~ 76 (593)
++..+++.+|..||.+ ++|+|+..|+..++..++ .+..++..+|..+|.|++|.|+|+||+.++....... ....
T Consensus 48 ~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~~~-~~~~ 126 (224)
T 1s1e_A 48 FTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGT-VHEK 126 (224)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHCC-HHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCCCCcEeHHHHHHHHHHHccCC-HHHH
Confidence 3678999999999984 999999999999999876 4567788999999999999999999999987654221 1111
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhh----hhhhhhhcc-ccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGI----GEANVHKFL-NTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g~~~~~~~~-~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
....+...+... .+......|..++..+ |.......- ....+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 127 l~~~F~~~D~d~---dG~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~--D~d-~dG~Is~~EF~~~~~ 200 (224)
T 1s1e_A 127 LRWTFNLYDINK---DGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKM--DKN-KDGIVTLDEFLESCQ 200 (224)
T ss_dssp HHHHHHHHCTTC---CSEECHHHHHHHHHHHHHHHTTCCCGGGCSSSHHHHHHHHHHHH--CTT-CSSCEEHHHHHHHHH
T ss_pred HHHHHHHHcCCC---CCeECHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHh--CCC-CCCcEeHHHHHHHHH
Confidence 122222222221 2223344577777666 432100000 00237899999999 554 345678999988765
Q ss_pred H
Q psy8073 152 D 152 (593)
Q Consensus 152 ~ 152 (593)
+
T Consensus 201 ~ 201 (224)
T 1s1e_A 201 E 201 (224)
T ss_dssp T
T ss_pred h
Confidence 4
No 382
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=98.53 E-value=2.1e-07 Score=86.22 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=85.5
Q ss_pred CCCCCCcccHHHHHHHHHcC--------CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCCCCC
Q psy8073 14 DKKGTGQIGPEEFRELCTGF--------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAGAMS 85 (593)
Q Consensus 14 D~d~~G~I~~~el~~~l~~l--------~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (593)
+.+++|+|+..||+.+|+.+ +++..++..+|..+|.|++|.|+|+||+.++.... ....+|...+
T Consensus 14 ~~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~-------~l~~aF~~fD 86 (174)
T 2i7a_A 14 LVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLV-------HYQHVFQKVQ 86 (174)
T ss_dssp SCC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHHH-------HHHHHHHHHC
T ss_pred cCCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH-------HHHHHHHHhc
Confidence 67999999999999999976 45677889999999999999999999998875431 1111222222
Q ss_pred CCCCCCCCchhhhHHHHHHHhh----hhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 86 SEGPERRNSDVQNAWSLLLAGI----GEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~l----g~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
. ..+......++.++..+ |... +.+++..++..+ + +..+..+|++|+..+..
T Consensus 87 -d---~~G~I~~~El~~~l~~l~~~~G~~~-------~~~~~~~l~~~~--d--d~dG~I~~~EF~~~~~~ 142 (174)
T 2i7a_A 87 -T---SPGVLLSSDLWKAIENTDFLRGIFI-------SRELLHLVTLRY--S--DSVGRVSFPSLVCFLMR 142 (174)
T ss_dssp -S---BTTBEEGGGHHHHHHTCGGGTTCCC-------CHHHHHHHHHHH--S--CTTSEECHHHHHHHHHH
T ss_pred -C---CCCcCCHHHHHHHHHHhHhccCCCC-------CHHHHHHHHHHH--c--CCCCeEcHHHHHHHHHH
Confidence 1 12223344588888888 7544 788899999998 4 35667899999987654
No 383
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.53 E-value=7.8e-08 Score=85.06 Aligned_cols=61 Identities=18% Similarity=0.395 Sum_probs=47.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
...++.+|..+|++++|+|+..++..++..+| ++..+++.+|..+| |++|.|+|+||+.+|
T Consensus 78 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~ 140 (142)
T 2bl0_C 78 EDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE-TEKGQIRYDNFINTM 140 (142)
T ss_dssp HHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence 45677888888888888888888888887665 66777778888888 888888888887654
No 384
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=98.52 E-value=6.6e-08 Score=93.54 Aligned_cols=64 Identities=27% Similarity=0.507 Sum_probs=59.7
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcC---CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGF---DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..++.+|..||+|++|+|+..||..+|..+ |++.+++..+|..+|.|++|.|+|+||+.+|...
T Consensus 133 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~~~ 199 (226)
T 2lvv_A 133 FELTVMFDTMDKDGSLLLELQEFKEALPKLKEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVTK 199 (226)
T ss_dssp HHHHHHHHHHSCSSCCEECHHHHHHHHHHHHHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCeEcHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhc
Confidence 478999999999999999999999999877 8888889999999999999999999999999764
No 385
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=98.52 E-value=6.7e-08 Score=86.52 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=51.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC----------CCCHHHHHHHH----HHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF----------DIQPTDSDAIF----ADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l----------~l~~~e~~~i~----~~~D~d~~G~i~~~eF~~~~ 64 (593)
+++++.+|..||+|++|+|+..||..++..+ .++..++..++ ..+|.|+||+|+|+||+.+|
T Consensus 67 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~~~ 142 (143)
T 3a4u_B 67 QELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL 142 (143)
T ss_dssp HHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred HHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence 4578999999999999999999999999876 37777776555 99999999999999998765
No 386
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=98.52 E-value=5.3e-08 Score=87.18 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=55.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
...++.+|..+|++++|+|+..|+..++..+| ++..++..+|..+| |++|.|+|+||+..+.
T Consensus 86 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~~ 149 (151)
T 1w7j_B 86 YEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHE-DSNGCINYEAFLKHIL 149 (151)
T ss_dssp --CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCC-CTTSEEEHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCCCeEeHHHHHHHHh
Confidence 34678899999999999999999999999877 78889999999999 9999999999998763
No 387
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=98.52 E-value=9.5e-08 Score=91.88 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=92.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHc-CCCCHH--HHHHHHHH----h-----CCCCCCcccHHHHHHHHHHHhhhh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTG-FDIQPT--DSDAIFAD----L-----DHDGDGKVSLEDFAYGFREFLNSD 71 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~-l~l~~~--e~~~i~~~----~-----D~d~~G~i~~~eF~~~~~~~~~~~ 71 (593)
.+++.+|..||.|++|+|+..||..+|.. +|.++. ++..++.. + +.|++|.|+|.||+.++......
T Consensus 48 ~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~I~~~EF~~~~~~~~~~- 126 (219)
T 3cs1_A 48 QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYI- 126 (219)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHHHTSCCCSSBCHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhccCCCCcCCHHHHHHHHHHHhcc-
Confidence 56889999999999999999999999986 786543 44444332 2 34789999999999886543211
Q ss_pred hhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhh-hhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 72 ARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGE-ANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~-~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
.........+...+.. ..+......|..++..+|. .. +.+++..++..+ +.+ ..+..+|++|+..+
T Consensus 127 ~~~~~l~~~F~~~D~d---~~G~Is~~El~~~l~~~g~~~~-------~~~e~~~l~~~~--D~d-~dG~I~~~EF~~~~ 193 (219)
T 3cs1_A 127 YDFFELTVMFDEIDAS---GNMLVDEEEFKRAVPKLEAWGA-------KVEDPAALFKEL--DKN-GTGSVTFDEFAAWA 193 (219)
T ss_dssp HHHHHHHHHHHTTCSS---SSSEEEHHHHHHHHHHHHHHTC-------CCSCHHHHHHHH--CTT-SSSEEEHHHHHHHH
T ss_pred chHHHHHHHHHHHCCC---CCCcCcHHHHHHHHHHhcccCC-------CHHHHHHHHHHh--CCC-CCCcEeHHHHHHHH
Confidence 1111222233333332 2233444568889988886 44 677899999999 543 35567999999877
Q ss_pred HHH
Q psy8073 151 LDD 153 (593)
Q Consensus 151 ~~~ 153 (593)
...
T Consensus 194 ~~~ 196 (219)
T 3cs1_A 194 SAV 196 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 388
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=98.51 E-value=9.9e-08 Score=90.23 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=58.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC-C--CCHHHHHHHHHH----hCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF-D--IQPTDSDAIFAD----LDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-~--l~~~e~~~i~~~----~D~d~~G~i~~~eF~~~~~~~ 67 (593)
...++.+|..||.|++|+|+..||..++..+ | ++..+++.+|.. +|.|++|.|+|+||+.++...
T Consensus 113 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~~ 184 (202)
T 2bec_A 113 RNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKM 184 (202)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTTTS
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHh
Confidence 4679999999999999999999999999977 7 778888888888 999999999999999988654
No 389
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=98.51 E-value=3.7e-07 Score=88.11 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=88.8
Q ss_pred HHHHHHHhHhCCC--CCCcccHHHHHHHHHcCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 4 LQLEELFKTCDKK--GTGQIGPEEFRELCTGFD-IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 4 ~~l~~~F~~~D~d--~~G~I~~~el~~~l~~l~-l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
.+++.+|..+|.| ++|+|+..||..++...+ .....+..+|..+|.|++|.|+|+||+.++................
T Consensus 48 ~~l~~~F~~~D~d~~~~G~I~~~El~~~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~l~~~ 127 (226)
T 2zfd_A 48 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFS 127 (226)
T ss_dssp HHHHHHHHHHHTSSSCSSSBCHHHHHHHHHSCSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCcccCCCCeEcHHHHHHHHhccCcccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHccCCCHHHHHHHH
Confidence 4678899999999 999999999999998622 2233466899999999999999999999987653221111112222
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHH----hhhhhhhhhccccCchHHHHHH----HHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLA----GIGEANVHKFLNTSGKKLADLY----HELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~----~lg~~~~~~~~~~~~eev~~l~----~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
+...+... .+......|..++. .+|... +.+++..++ ..+ +.+ ..+..+|++|+..+.+
T Consensus 128 F~~~D~d~---~G~Is~~E~~~~l~~~~~~~g~~~-------~~~~~~~~~~~~f~~~--D~d-~dG~I~~~EF~~~~~~ 194 (226)
T 2zfd_A 128 FQLYDLKQ---QGFIERQEVKQMVVATLAESGMNL-------KDTVIEDIIDKTFEEA--DTK-HDGKIDKEEWRSLVLR 194 (226)
T ss_dssp HHHHCTTS---SSSEEHHHHHHHHHHHHHHTTCCC-------CHHHHHHHHHHHHHHH--CSS-CSSEECHHHHHHHHHH
T ss_pred HHHhCCCC---CCcccHHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHHh
Confidence 32222221 22233345666664 455443 566665555 467 444 3556789999887654
No 390
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=98.51 E-value=2.5e-07 Score=86.51 Aligned_cols=142 Identities=15% Similarity=0.273 Sum_probs=93.2
Q ss_pred CCHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcCCC---CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhc
Q psy8073 1 MSDLQLEELFKTCDKK-GTGQIGPEEFRELCTGFDI---QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLK 76 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~l---~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~ 76 (593)
++.++++.+|..||.+ ++|+|+..|+..++..++. +...+..+|..+|.|++|.|+|.||..++....... ....
T Consensus 22 ~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~-~~~~ 100 (193)
T 1bjf_A 22 FTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGK-LEQK 100 (193)
T ss_dssp CCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHTSSC-HHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHhcCcCChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCC-HHHH
Confidence 3678999999999998 8999999999999998764 344678999999999999999999999987653211 1111
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhh----hhhhhhhcc---ccCchHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGI----GEANVHKFL---NTSGKKLADLYHELRTSSNCPEIVTHFEGALSS 149 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g~~~~~~~~---~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~ 149 (593)
....+...+... .+......|..++..+ |... ..- ....+.+..+|..+ +.+ ..+..+|++|+..
T Consensus 101 ~~~~f~~~D~d~---~G~I~~~E~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~f~~~--D~d-~dG~I~~~Ef~~~ 172 (193)
T 1bjf_A 101 LKWAFSMYDLDG---NGYISKAEMLEIVQAIYKMVSSVM--KMPEDESTPEKRTEKIFRQM--DTN-RDGKLSLEEFIRG 172 (193)
T ss_dssp HHHHHHHHCTTC---SSCEEHHHHHHHHHHHHTTCCCTT--TSCGGGSSHHHHHHHHHHHS--CTT-CSSEECHHHHHHH
T ss_pred HHHHHhhcCCCC---CCeECHHHHHHHHHHHHHHhcccc--CCCcccccHHHHHHHHHHHh--CCC-CCCeEeHHHHHHH
Confidence 112222222221 1222334566666553 4211 000 00134588999988 554 3455689999887
Q ss_pred HH
Q psy8073 150 LL 151 (593)
Q Consensus 150 ~~ 151 (593)
+.
T Consensus 173 ~~ 174 (193)
T 1bjf_A 173 AK 174 (193)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 391
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=98.51 E-value=7e-08 Score=87.10 Aligned_cols=63 Identities=33% Similarity=0.617 Sum_probs=57.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
...++.+|..+|++++|+|+..+|..++..+| ++..++..+|..+|.|++|.|+|+||+.+|.
T Consensus 90 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 154 (158)
T 2jnf_A 90 QQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMT 154 (158)
T ss_dssp SSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCSSCCSEECSHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 34689999999999999999999999999766 7788899999999999999999999998874
No 392
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=98.50 E-value=1.8e-07 Score=83.30 Aligned_cols=60 Identities=12% Similarity=0.272 Sum_probs=55.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
...++.+|..||+|++|+|+..++..++..+| +++.+++.+|..+ |++|.|+|+||+..|
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~l 144 (146)
T 2qac_A 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SSEDNIDYKLFCEDI 144 (146)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH--CSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCCCcCcHHHHHHHH
Confidence 56799999999999999999999999999777 7888999999999 999999999999886
No 393
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=98.50 E-value=7.1e-08 Score=87.82 Aligned_cols=64 Identities=27% Similarity=0.605 Sum_probs=49.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..+|.+++|+|+..|+..++..+|+++.++..+|..+|.|++|.|+|+||+..+..
T Consensus 98 ~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 161 (166)
T 2aao_A 98 EDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMMQK 161 (166)
T ss_dssp THHHHHHHHHHCTTCSSSBCHHHHHHHTCC--------CCHHHHHCTTCSSSBCHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 3568889999999999999999999999988888888889999999999999999999988754
No 394
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A
Probab=98.50 E-value=1.5e-07 Score=87.54 Aligned_cols=66 Identities=20% Similarity=0.410 Sum_probs=58.8
Q ss_pred HHHHHH--hHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhh
Q psy8073 5 QLEELF--KTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNS 70 (593)
Q Consensus 5 ~l~~~F--~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~ 70 (593)
++..+| ..||+|++|+|+..||..++..+| ++..++..+|..+|.|++|+|+|+||+.++..+..+
T Consensus 101 ~~~~~f~~~~fD~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~~~~ 170 (186)
T 2hps_A 101 VIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFG 170 (186)
T ss_dssp THHHHHHHHHHCTTCSSEEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHhcC
Confidence 455566 888999999999999999999777 888899999999999999999999999999887643
No 395
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=98.49 E-value=1.3e-07 Score=102.94 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=91.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcC--------C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhh
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGF--------D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDAR 73 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--------~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~ 73 (593)
.+++++|..+|+|++|+|+.+||..++..+ | .+..++..+|..+|.|++|.|+|+||+.++....... .
T Consensus 355 ~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~~~-~ 433 (504)
T 3q5i_A 355 KELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILF-S 433 (504)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCHHHHT-C
T ss_pred HHHHHHHHeeCCCCCCeEcHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhhhccc-C
Confidence 578999999999999999999999998865 3 3456788999999999999999999999875431111 1
Q ss_pred hhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 74 RLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
.......+...+... .+......|..++...+ -+.+++..++..+ +.+ ..+..+|++|+..+..
T Consensus 434 ~~~~~~~F~~~D~d~---dG~Is~~El~~~l~~~~---------~~~~~~~~~~~~~--D~d-~dG~I~~~EF~~~~~~ 497 (504)
T 3q5i_A 434 EERLRRAFNLFDTDK---SGKITKEELANLFGLTS---------ISEKTWNDVLGEA--DQN-KDNMIDFDEFVSMMHK 497 (504)
T ss_dssp HHHHHHHHHHHCTTC---CSEECHHHHHHHTTCSC---------CCHHHHHHHHHTT--CSS-CSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC---CCcCcHHHHHHHHhhCC---------CCHHHHHHHHHHh--CCC-CCCcEeHHHHHHHHHH
Confidence 111122233233222 22223344666654321 1778899999988 544 3556789999887654
No 396
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=98.49 E-value=1.3e-07 Score=88.27 Aligned_cols=144 Identities=13% Similarity=0.153 Sum_probs=92.8
Q ss_pred CHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcc
Q psy8073 2 SDLQLEELFKTCDKK-GTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKS 77 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~ 77 (593)
+..+++.+|..||.+ ++|+|+..|+..++..++ .+...+..+|..+|.|++|.|++.||..++...... ......
T Consensus 23 ~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~-~~~~~~ 101 (190)
T 2l2e_A 23 DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRG-ELNDKL 101 (190)
T ss_dssp CSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSSSTTCEEHHHHHHHHTTSSCS-CSHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCCCCCeEeHHHHHHHHHHHcCC-CHHHHH
Confidence 467889999999999 899999999999999764 334467799999999999999999999988653211 111111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHh----hhhhhhh-hccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAG----IGEANVH-KFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----lg~~~~~-~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+...+... .+......|..++.. +|...-. ..-....+++..+|..+ +.+ ..+..+|++|+..+..
T Consensus 102 ~~~f~~~D~d~---~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~--D~d-~dG~I~~~Ef~~~~~~ 175 (190)
T 2l2e_A 102 IWAFQLYDLDN---NGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMM--DKN-KDGQLTLEEFCEGSKR 175 (190)
T ss_dssp HHHHHHHCTTS---CSCBCHHHHHHHHHHHHHHHHHHSCCCSSCCCTHHHHHHHHHHH--TCC-SSCCBCHHHHHHHHHT
T ss_pred HHHHhHccCCC---CCcCcHHHHHHHHHHHHHHhccccCcccccccHHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHHh
Confidence 11122222211 122233457777655 3432100 00002567899999999 554 3455689998876653
No 397
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=98.48 E-value=1.3e-07 Score=87.85 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=54.2
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCC--------CcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGD--------GKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~--------G~i~~~eF~~~~~~ 66 (593)
..++.+|..||+|++|+|+.+||..++...++++.+++.+|..+|.|++ |.|+|+||+..|..
T Consensus 108 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~~ 178 (180)
T 3mse_B 108 TFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYMLS 178 (180)
T ss_dssp CHHHHHHHHHCTTCSSCBCHHHHHHHTTTSSCCHHHHHHHHHHHHTC---------CCCBCHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHcCCCCCHHHHHHHHHHhhhccCcccccccCCeeeHHHHHHHHHh
Confidence 5788899999999999999999999999888889999999999999888 89999999988753
No 398
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=98.48 E-value=1.2e-07 Score=83.59 Aligned_cols=62 Identities=26% Similarity=0.384 Sum_probs=56.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
...++.+|..+|+|++|+|+..++..++..+| ++..+++.+|..+|. ++|.|+|+||+..+.
T Consensus 75 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~i~~~eF~~~~~ 138 (140)
T 1ggw_A 75 PEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV-KDGMVNYHDFVQMIL 138 (140)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTC-SSCCSTTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CCCcEeHHHHHHHHh
Confidence 37899999999999999999999999999665 788899999999999 999999999998874
No 399
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=98.48 E-value=2.1e-07 Score=85.86 Aligned_cols=64 Identities=30% Similarity=0.579 Sum_probs=56.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..+|+|++|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|+||+..+..
T Consensus 83 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 148 (179)
T 2f2o_A 83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148 (179)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHC--CCCHHHHHHHHHHHCTTCSSSEEHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 35688999999999999999999999999776 77888999999999999999999999988754
No 400
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=98.47 E-value=7.3e-08 Score=104.29 Aligned_cols=135 Identities=16% Similarity=0.207 Sum_probs=75.1
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHH----HHcCCCC------------HHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFREL----CTGFDIQ------------PTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~----l~~l~l~------------~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
.+++++|..+|.|++|+|+.+||..+ ++.+|.+ ..++..+|..+|.|++|.|+|+||+.++...
T Consensus 331 ~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~Ef~~~~~~~ 410 (486)
T 3mwu_A 331 KQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDR 410 (486)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHHCTTCCSSBCHHHHHHHHSCT
T ss_pred HHHHHHHHHhCCCCCceeeHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHhcCCCCCcCcHHHHHHHHHhh
Confidence 57899999999999999999999544 4455654 3467799999999999999999998876432
Q ss_pred hhhhhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHH
Q psy8073 68 LNSDARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGAL 147 (593)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i 147 (593)
.... ........+...+....+. .....|..++..+|... +.+++..++..+ +.+ ..+..+|++|+
T Consensus 411 ~~~~-~~~~~~~~F~~~D~d~dG~---Is~~El~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dG~I~~~EF~ 476 (486)
T 3mwu_A 411 TILL-SRERMERAFKMFDKDGSGK---ISTKELFKLFSQADSSI-------QMEELESIIEQV--DNN-KDGEVDFNEFV 476 (486)
T ss_dssp TTTC-CHHHHHHHHHHHCSSCSSS---BCSSCC---------------------------CCC--CSS-CSSSBCHHHHH
T ss_pred hccc-hHHHHHHHHHHhCCCCCCc---CCHHHHHHHHHHcCCCC-------CHHHHHHHHHHh--CCC-CCCcEeHHHHH
Confidence 1111 1111112222222222111 12234677777777655 778899998877 443 45667899998
Q ss_pred HHHHH
Q psy8073 148 SSLLD 152 (593)
Q Consensus 148 ~~~~~ 152 (593)
..+..
T Consensus 477 ~~~~~ 481 (486)
T 3mwu_A 477 EMLQN 481 (486)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86654
No 401
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A
Probab=98.47 E-value=5e-08 Score=90.75 Aligned_cols=136 Identities=9% Similarity=0.092 Sum_probs=91.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC------CCCHH--HHHHH---------HHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF------DIQPT--DSDAI---------FADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l------~l~~~--e~~~i---------~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
..+++.+|..||.|++|+|+..||..+++.+ |.+++ ++..+ |..+|.|++|.|+|+| .++.
T Consensus 13 ~~~l~~~F~~~D~d~dG~i~~~El~~~l~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~f~~~D~d~dg~I~~~E--~~~~ 90 (186)
T 2hps_A 13 LRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNAT--DSLL 90 (186)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCTTCEEEHHHHHHHHH--HHHH
T ss_pred HHHHHHHhhhcCCCCCCccCHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCcccHHH--HHHH
Confidence 3578999999999999999999999999755 65544 55666 5999999999999999 4444
Q ss_pred HHhhhhhhhhcccccC--CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhh
Q psy8073 66 EFLNSDARRLKSNVNA--GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHF 143 (593)
Q Consensus 66 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~ 143 (593)
..............++ ..+ +....+......|..++..+|... +.+++..++..+ +.+ ..+..+|
T Consensus 91 ~~~~~~~~~~~~~~~f~~~~f---D~d~~G~I~~~E~~~~l~~~g~~~-------~~~~~~~~~~~~--D~d-~dG~i~~ 157 (186)
T 2hps_A 91 KMKGEEKAMAVIQSLIMYDCI---DTDKDGYVSLPEFKAFLQAVGPDL-------TDDKAITCFNTL--DFN-KNGQISR 157 (186)
T ss_dssp HCCTHHHHHTTHHHHHHHHHH---CTTCSSEEEHHHHHHHHHHHCTTC-------CHHHHHHHHHHH--CTT-CSSEEEH
T ss_pred HhcCChHHHHHHHHHHHHHHc---cCCCCCcCCHHHHHHHHHHhCCCC-------CHHHHHHHHHHH--cCC-CCCcCcH
Confidence 3321111101100000 111 222223344456888998888654 788999999999 544 3455689
Q ss_pred HHHHHHHHHH
Q psy8073 144 EGALSSLLDD 153 (593)
Q Consensus 144 E~~i~~~~~~ 153 (593)
++|+..+..-
T Consensus 158 ~ef~~~~~~~ 167 (186)
T 2hps_A 158 DEFLVTVNDF 167 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877653
No 402
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=98.47 E-value=5e-07 Score=85.62 Aligned_cols=136 Identities=15% Similarity=0.068 Sum_probs=87.7
Q ss_pred HHHHHHHhHhCCC--CCCcccHHHHHHHHHcCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 4 LQLEELFKTCDKK--GTGQIGPEEFRELCTGFD-IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 4 ~~l~~~F~~~D~d--~~G~I~~~el~~~l~~l~-l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
.+++.+|..+|.| ++|+|+..|+..++...+ .....+..+|..+|.|++|.|+|.||+.++..+.............
T Consensus 37 ~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~l~~~ 116 (207)
T 2ehb_A 37 EALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFA 116 (207)
T ss_dssp HHHHHHHHHHTTSSSCSSCEEHHHHHHHHHSCTTCCCHHHHHHHHHHCTTCSSEECHHHHHHHHGGGSTTSCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCccCHHHHHHHHhccccccHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHHccCCCHHHHHHHH
Confidence 4678899999999 999999999999998632 2233567899999999999999999999987653211111112222
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHH----hhhhhhhhhccccCchHHHHHH----HHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLA----GIGEANVHKFLNTSGKKLADLY----HELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~----~lg~~~~~~~~~~~~eev~~l~----~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
+...+... .+......|..++. .+|... +.+++..++ ..+ +.+ ..+..+|++|+..+..
T Consensus 117 F~~~D~d~---~G~I~~~E~~~~l~~~~~~~g~~~-------~~~~~~~~~~~~f~~~--D~d-~dG~I~~~Ef~~~~~~ 183 (207)
T 2ehb_A 117 FKLYDLRQ---TGFIEREELKEMVVALLHESELVL-------SEDMIEVMVDKAFVQA--DRK-NDGKIDIDEWKDFVSL 183 (207)
T ss_dssp HHHHCTTC---CSSEEHHHHHHHHHHHHHHHTCCC-------CHHHHHHHHHHHHHHH--CTT-CSSEECHHHHHHHHHH
T ss_pred HHHhCCCC---CCcCcHHHHHHHHHHHHHHccccc-------CHHHHHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHHh
Confidence 22222221 12223344666664 445443 556665544 567 444 3456789999887654
No 403
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.46 E-value=5e-07 Score=94.85 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccCCCC-ccceee--EEEEEEECCeeEEEEEEecCCchhhh----h-hhHhhcc
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGS-TLGVDF--QMKTIRVDERNVALQLWDTAGQERFR----S-MTKNYFR 463 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~g~~~--~~~~~~~~~~~~~~~l~DTaG~e~~~----~-~~~~~~~ 463 (593)
...|+|+|++|||||||+|.+++-..+....- ..|.+. ......... .-.+.+||++|..... . +....+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 35899999999999999999998532111111 111111 001111111 1147899999953211 1 1112234
Q ss_pred CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC-ccccccccccCHHH----HHHHH----HHhC
Q psy8073 464 RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA-DAQAKGVKCIDREV----GEKLA----QQYG 534 (593)
Q Consensus 464 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~-~~~~~~~~~v~~~~----~~~l~----~~~~ 534 (593)
..+.+++ ++..... .+.+. + .......+.|+++|.||.|+.- +.+...+....... ...+. ...+
T Consensus 148 ~~~~~~~-lS~G~~~-kqrv~-l---a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFK-KNDID-I---AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCC-HHHHH-H---HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCcc-HHHHH-H---HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566665 7775311 12211 1 1222223589999999999631 11111222222322 23332 1222
Q ss_pred ---CeEEEEcC--CCCCCHHHHHHHHHHHHHhhcc
Q psy8073 535 ---AIFMETSS--KSGDNILDALIALSRHVYVFIP 564 (593)
Q Consensus 535 ---~~~~e~Sa--~~g~gi~~l~~~L~~~l~~~~~ 564 (593)
..++.+|+ .++.|++++.+.|...+.+..+
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 25678999 6667899999999988866443
No 404
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=98.45 E-value=1.1e-08 Score=86.47 Aligned_cols=63 Identities=30% Similarity=0.578 Sum_probs=51.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
..+++.+|..||+|++|+|+..|+..++..+ | ++..+++.+|..+|.|++|.|+|+||+.++.
T Consensus 40 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 107 (108)
T 2kyc_A 40 SSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQ 107 (108)
T ss_dssp SSSHHHHCSSSCSCCSSCCCGGGTTTSHHHHSSSCCCCCTTTTHHHHTTTCCSSSSCCCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHh
Confidence 3467888999999999999999988888865 3 6667788899999999999999999988764
No 405
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=98.45 E-value=2.6e-07 Score=82.77 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=40.9
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHc-CC--CCHHHHHHHHHH----hCCCCCCcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTG-FD--IQPTDSDAIFAD----LDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~-l~--l~~~e~~~i~~~----~D~d~~G~i~~~eF~~~~~~ 66 (593)
..++.+|..+|+|++|+|+..|+..++.. +| ++..++..++.. +|.|++|.|+|+||+.++..
T Consensus 75 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 144 (155)
T 3ll8_B 75 QKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGG 144 (155)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGG
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 45666677777777777777777666654 23 556666655555 67777777777777666654
No 406
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=98.45 E-value=2.5e-07 Score=86.20 Aligned_cols=144 Identities=12% Similarity=0.135 Sum_probs=94.1
Q ss_pred CHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcc
Q psy8073 2 SDLQLEELFKTCDKK-GTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKS 77 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~ 77 (593)
+.++++.+|..||.+ ++|+|+..|+..++..++ .+...+..+|..+|.|++|.|++.||..++....... .....
T Consensus 23 ~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~-~~~~~ 101 (190)
T 1fpw_A 23 DRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGT-LEEKL 101 (190)
T ss_dssp THHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECHHHHHHHHHHHSCCC-STHHH
T ss_pred CHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHHccCC-cHHHH
Confidence 578999999999987 899999999999999763 4566788999999999999999999999987653211 11111
Q ss_pred cccCCCCCCCCCCCCCchhhhHHHHHHHhh----hhhhhhhc-cccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 78 NVNAGAMSSEGPERRNSDVQNAWSLLLAGI----GEANVHKF-LNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g~~~~~~~-~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
...+...+.. ..+......|..++..+ |...-... -....+++..+|..+ +.+ ..+..+|++|+..+..
T Consensus 102 ~~~f~~~D~d---~~G~i~~~ef~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~--D~d-~dG~I~~~Ef~~~~~~ 175 (190)
T 1fpw_A 102 SWAFELYDLN---HDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLM--DKN-EDGYITLDEFREGSKV 175 (190)
T ss_dssp HHHHHHHCSS---CSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHH--TTT-CSSEEEHHHHHHHHHS
T ss_pred HHHHHHhcCC---CCCcCcHHHHHHHHHHHHHHhccccCcccccchHHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHHh
Confidence 1112212211 12223334577777653 42100000 001456799999999 544 3455689998876654
No 407
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=98.45 E-value=4.2e-07 Score=83.43 Aligned_cols=63 Identities=24% Similarity=0.555 Sum_probs=56.9
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..++.+|..+|+|++|+|+..|+..++..+| ++..++..+|..+|.|++|.|+|+||+.++..
T Consensus 74 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 138 (172)
T 2znd_A 74 TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIV 138 (172)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4678899999999999999999999999776 67788889999999999999999999998865
No 408
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=98.44 E-value=3.2e-07 Score=86.15 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=54.1
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcC--C--CCHH---HHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGF--D--IQPT---DSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--~--l~~~---e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
.++.++.+|..+|.|++|+|+.+||..++... | +++. ++..+|..+|.|+||.|+|+||+.+|
T Consensus 120 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~ 189 (191)
T 3k21_A 120 SKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMM 189 (191)
T ss_dssp CHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHH
Confidence 35788999999999999999999999999863 3 4443 57799999999999999999999876
No 409
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.44 E-value=4.7e-08 Score=91.68 Aligned_cols=63 Identities=29% Similarity=0.572 Sum_probs=59.1
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..++.+|..||+|++|+|+..||..++..+|+++.+++.+|..+|.|++|.|+|+||+.+|..
T Consensus 82 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~ 144 (188)
T 1s6i_A 82 ENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRK 144 (188)
T ss_dssp CSTHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHHHHHHHHCSSSSSEEETTHHHHTTSC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999998854
No 410
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=98.44 E-value=2.1e-07 Score=88.47 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=57.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC-C--CCHHHHHHH----HHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF-D--IQPTDSDAI----FADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-~--l~~~e~~~i----~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..||+|++|+|+..||..++..+ | +++.+++.+ |..+|.|+||.|+|+||+.++..
T Consensus 112 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~~~ 182 (208)
T 2ct9_A 112 SNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK 182 (208)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTTTT
T ss_pred HHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 5689999999999999999999999999864 5 777787777 99999999999999999988754
No 411
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.43 E-value=2e-07 Score=97.01 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=72.1
Q ss_pred CCchhhhhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHH
Q psy8073 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEK 528 (593)
Q Consensus 449 aG~e~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~ 528 (593)
..+++|.+....++..++++|+|+|++++.+ .|...+..... +.|+|+|+||+|+..... ......+....
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~~---~~~~~~~~l~~ 126 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRSV---KYPKLLRWMRR 126 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTTC---CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCcc---CHHHHHHHHHH
Confidence 3588999999999999999999999998764 34445554443 589999999999965310 00011122233
Q ss_pred HHHHhCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q psy8073 529 LAQQYGA---IFMETSSKSGDNILDALIALSRHV 559 (593)
Q Consensus 529 l~~~~~~---~~~e~Sa~~g~gi~~l~~~L~~~l 559 (593)
++...|. .++.+||++|.|+++++..|.+..
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455665 689999999999999999987654
No 412
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.42 E-value=1.4e-07 Score=94.48 Aligned_cols=59 Identities=32% Similarity=0.500 Sum_probs=37.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCc
Q psy8073 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQ 451 (593)
Q Consensus 389 ~~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~ 451 (593)
....++|+|+|.||||||||+|+|++.. ...++.++|++.....+.++. .+.||||||.
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSC-CC------------CCEEETT---TEEEEECCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCc-eeecCCCCCeeeeeEEEEeCC---CEEEEECcCc
Confidence 3467899999999999999999999875 334566667666555555543 5889999995
No 413
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=98.42 E-value=3.4e-07 Score=88.17 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=51.7
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..++.+|..+|+|++|+|+.+||..++..+| +++.+++.+|..+| |++|.|+|+||+.++...
T Consensus 117 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l 181 (220)
T 3sjs_A 117 ELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFA 181 (220)
T ss_dssp HHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHH
Confidence 4578889999999999999999999998655 67778889999999 999999999999888654
No 414
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=98.41 E-value=1.9e-07 Score=89.75 Aligned_cols=65 Identities=26% Similarity=0.476 Sum_probs=59.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
...++.+|..||+|++|+|+..||..++..+ +++..+++.+|..+|.|++|.|+|+||+.+|...
T Consensus 129 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~~~ 196 (219)
T 3cs1_A 129 FFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAV 196 (219)
T ss_dssp HHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHHHHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhcccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence 3578999999999999999999999999865 4788889999999999999999999999998764
No 415
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=98.41 E-value=2.9e-07 Score=104.02 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=97.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC----------CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF----------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA 72 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l----------~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 72 (593)
..+++.+|..+| +++|.|+..||+.+|..+ +++..++..||..+|.|++|.|+|+||+.++....
T Consensus 531 ~~~l~~~F~~~D-d~dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~~---- 605 (714)
T 3bow_A 531 GDGFRRLFAQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQ---- 605 (714)
T ss_dssp CHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH----
Confidence 357999999999 999999999999999875 47788899999999999999999999999886541
Q ss_pred hhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 73 RRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
.....+...+.. ..+......|..++..+|... +.+++..++..+ + +..+..+|++|+..+..
T Consensus 606 ---~l~~~F~~~D~d---~dG~Is~~El~~~L~~~G~~l-------s~~~~~~l~~~~--D--d~dG~Isf~EF~~~l~~ 668 (714)
T 3bow_A 606 ---KYQKIYREIDVD---RSGTMNSYEMRKALEEAGFKL-------PCQLHQVIVARF--A--DDELIIDFDNFVRCLVR 668 (714)
T ss_dssp ---HHHHHHHHHCTT---CCSSEEHHHHHHHHHHTTEEC-------CHHHHHHHHHHH--S--CTTCEECHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCC---CCCeECHHHHHHHHHHcCCCC-------CHHHHHHHHHHh--C--CCCCeEcHHHHHHHHHH
Confidence 011112222221 122233456888898888655 778999999999 4 45677899999987764
No 416
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=98.41 E-value=1.2e-06 Score=84.82 Aligned_cols=142 Identities=18% Similarity=0.270 Sum_probs=93.2
Q ss_pred HHHHHHHHhHh-CCCCCCcccHHHHHHHHHcC-C--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccc
Q psy8073 3 DLQLEELFKTC-DKKGTGQIGPEEFRELCTGF-D--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSN 78 (593)
Q Consensus 3 ~~~l~~~F~~~-D~d~~G~I~~~el~~~l~~l-~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~ 78 (593)
.++++.+|..| +.+++|.|+..++..++..+ + .+...+..+|..+|.|++|.|+|+||+.++..+..... .....
T Consensus 63 ~~ei~~l~~~F~~~d~~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~-~~~l~ 141 (229)
T 3dd4_A 63 KKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTV-QEKLN 141 (229)
T ss_dssp HHHHHHHHHHHHTTCCSCCCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCH-HHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCCh-HHHHH
Confidence 56677777777 67899999999999999863 3 44456679999999999999999999999877643221 11222
Q ss_pred ccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhh------hhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 79 VNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANV------HKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~------~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
..+...+.... +......|..++..++...- .+. ....+++..++..+ +.+ ..+..+|++|+..+..
T Consensus 142 ~~F~~~D~d~d---G~Is~~E~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~--D~d-~dG~Is~~EF~~~~~~ 214 (229)
T 3dd4_A 142 WAFNLYDINKD---GYITKEEMLDIMKAIYDMMGKCTYPVLKE-DAPRQHVETFFQKM--DKN-KDGVVTIDEFIESCQK 214 (229)
T ss_dssp HHHHHHCTTCS---SCCBHHHHHHHHHHHHHHCC------------CCTHHHHHHHHH--CSS-CSSBCCHHHHHHHHHT
T ss_pred HHHHHhCCCCC---CeECHHHHHHHHHHHHHHhccccCCCcch-hhHHHHHHHHHHHh--cCC-CCCcEeHHHHHHHHHh
Confidence 23333333222 22333457777776642100 000 02668899999999 554 3456789999886653
No 417
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=98.40 E-value=1.7e-07 Score=89.88 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=88.7
Q ss_pred HHHHHhHhCC-----CC-C--CcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHHhhhhhhhhc
Q psy8073 6 LEELFKTCDK-----KG-T--GQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGK-VSLEDFAYGFREFLNSDARRLK 76 (593)
Q Consensus 6 l~~~F~~~D~-----d~-~--G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~-i~~~eF~~~~~~~~~~~~~~~~ 76 (593)
+..+|..+|+ |+ + |+|+..||.. +..+|.++. .+.||..+|.|++|. |+|+||+.++..+.........
T Consensus 53 l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~-l~~lg~~~~-~~~lf~~~D~d~dG~~I~f~EF~~~~~~~~~~~~~~~~ 130 (214)
T 2l4h_A 53 AHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPF-KERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIK 130 (214)
T ss_dssp HHHHHHHHSCGGGCCHHHHTTSEECHHHHTT-CHHHHTSTT-HHHHHHHHCCSSSCCSEEHHHHHHHHHHTSSCSCHHHH
T ss_pred HHHHHHHhCcccccccccccCCcCCHHHHHH-hhccCCChH-HHHHHHHhCcCCCCCEecHHHHHHHHHHHcCCCCHHHH
Confidence 3445666676 55 6 9999999999 887777665 457999999999999 9999999999765432222222
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhhhh-----hhhhhccccCchHHHH----HHHHHhcCCCCCchhhhhHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGE-----ANVHKFLNTSGKKLAD----LYHELRTSSNCPEIVTHFEGAL 147 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~-----~~~~~~~~~~~eev~~----l~~~l~~~~~~p~ll~~~E~~i 147 (593)
...++...+... .+......+..++..+|. .. +.+++.. ++..+ +.+ ..+..+|++|+
T Consensus 131 l~~~F~~~D~d~---dG~Is~~El~~~l~~~~~~~~~~~~-------s~~e~~~~~~~~~~~~--D~d-~dG~Is~~EF~ 197 (214)
T 2l4h_A 131 SHYAFRIFDFDD---DGTLNREDLSRLVNCLTGEGEDTRL-------SASEMKQLIDNILEES--DID-RDGTINLSEFQ 197 (214)
T ss_dssp HHHHHHHHCTTC---SSCBCHHHHHHHHHHHHHSSSCTTC-------SCTHHHHHHHHHHHHH--CCS-CCSSBCSHHHH
T ss_pred HHHHHHHhCCCC---CCcCCHHHHHHHHHHHhccccCCCC-------CHHHHHHHHHHHHHHh--CCC-CCCcCCHHHHH
Confidence 233333333322 222334568888888876 32 6666765 78777 444 34567899998
Q ss_pred HHHHH
Q psy8073 148 SSLLD 152 (593)
Q Consensus 148 ~~~~~ 152 (593)
..+..
T Consensus 198 ~~~~~ 202 (214)
T 2l4h_A 198 HVISR 202 (214)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 86654
No 418
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.40 E-value=5.9e-07 Score=89.23 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccC---------CCCccceeeEEEEEEECCe--eEEEEEEecCCchh-------
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKEVFLNK---------LGSTLGVDFQMKTIRVDER--NVALQLWDTAGQER------- 453 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~~~~~~---------~~~t~g~~~~~~~~~~~~~--~~~~~l~DTaG~e~------- 453 (593)
.++|+|+|++|+|||||+|.|++...+.. ...+. ......+..... ...++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~--~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTV--EIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCC--SCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcce--eeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 37899999999999999999987532110 01111 011111111111 13678999998211
Q ss_pred ------h-----hhhh----------HhhccCCCEEEEEEeCC-ChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCC
Q psy8073 454 ------F-----RSMT----------KNYFRRADGVMLLYDVT-NERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRA 511 (593)
Q Consensus 454 ------~-----~~~~----------~~~~~~ad~vi~v~D~~-~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~ 511 (593)
+ .... +..+..|+++++++|-. .+....++. .+...... +++|+|.||+|...
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~----~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE----FMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH----HHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH----HHHHHHhc-CcEEEEEeccccCC
Confidence 1 0000 11234578999999954 444433322 33444444 89999999999865
Q ss_pred c
Q psy8073 512 D 512 (593)
Q Consensus 512 ~ 512 (593)
.
T Consensus 155 ~ 155 (270)
T 3sop_A 155 L 155 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 419
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=98.40 E-value=2.2e-07 Score=100.74 Aligned_cols=133 Identities=17% Similarity=0.235 Sum_probs=90.1
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--------C--HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--------Q--PTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA 72 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--------~--~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 72 (593)
..+++++|..+|.|++|+|+.+||..++..+|. + ..++..+|..+|.|++|.|+|+||+.++...... .
T Consensus 345 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~G~I~~~EF~~~~~~~~~~-~ 423 (494)
T 3lij_A 345 TKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSL-L 423 (494)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCHHHH-T
T ss_pred HHHHHHHHHHhCcCCCCeEcHHHHHHHHHHhcccccccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhhhcc-c
Confidence 357899999999999999999999999986642 3 4567799999999999999999999987543111 1
Q ss_pred hhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 73 RRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
........+...+... .+......|..++.. .. -+.+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 424 ~~~~~~~~F~~~D~d~---~G~Is~~El~~~l~~--~~-------~~~~~~~~~~~~~--D~d-~dG~I~~~EF~~~~~ 487 (494)
T 3lij_A 424 SKDKLESAFQKFDQDG---NGKISVDELASVFGL--DH-------LESKTWKEMISGI--DSN-NDGDVDFEEFCKMIQ 487 (494)
T ss_dssp CHHHHHHHHHHHCTTC---SSEECHHHHHHHC-C--CS-------CCCHHHHHHHHTT--CSS-SSSSEEHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCC---CCcCCHHHHHHHHHh--cC-------CCHHHHHHHHHHh--CCC-CCCcCCHHHHHHHHH
Confidence 1111222333333322 222223346665533 11 2778899999988 543 456678999987664
No 420
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Probab=98.39 E-value=2.5e-07 Score=91.39 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=90.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC----C--CCHHHHH----HHHHHhCCCCCCcccHHHHHHHHHHH-----
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF----D--IQPTDSD----AIFADLDHDGDGKVSLEDFAYGFREF----- 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l----~--l~~~e~~----~i~~~~D~d~~G~i~~~eF~~~~~~~----- 67 (593)
..+++.+|..+|.|++|+|+..|+..++..+ | ++..++. .+|..+|.|++|.|+|+||+..+...
T Consensus 103 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~~~~~~ 182 (272)
T 2be4_A 103 SVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLL 182 (272)
T ss_dssp HHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEEEHHHHGGGSCCSSCSST
T ss_pred HHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHHhhhHHHHh
Confidence 5678999999999999999999999999855 4 6666664 49999999999999999998876420
Q ss_pred h------hhhhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHH----HHHHHhcCCCCC
Q psy8073 68 L------NSDARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLAD----LYHELRTSSNCP 137 (593)
Q Consensus 68 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~----l~~~l~~~~~~p 137 (593)
. ............+...+.. ..+......|..++..+|...-.. -+.+++.. ++..+ +.+ .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~F~~~D~d---~~G~Is~~E~~~~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~--D~d-~ 253 (272)
T 2be4_A 183 QFKMDASSQVERKRDFEKIFAHYDVS---RTGALEGPEVDGFVKDMMELVRPS---ISGGDLDKFRECLLTHC--DMN-K 253 (272)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHCTT---CCSEEETHHHHHHHHHHHHHHSSS---CCHHHHHHHHHHHHHHH--CCS-T
T ss_pred hhhhhhccccccHHHHHHHHHHhCCC---CCCeecHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHHh--CCC-C
Confidence 0 0000001111122222221 122233445778887777621000 16677776 88888 443 4
Q ss_pred chhhhhHHHHHHH
Q psy8073 138 EIVTHFEGALSSL 150 (593)
Q Consensus 138 ~ll~~~E~~i~~~ 150 (593)
.+..+|++|+..+
T Consensus 254 dG~is~~EF~~~~ 266 (272)
T 2be4_A 254 DGKIQKSELALCL 266 (272)
T ss_dssp TCEEEHHHHHHHT
T ss_pred CCcCcHHHHHHHH
Confidence 5567899998754
No 421
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=98.38 E-value=4.3e-08 Score=108.59 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=47.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDI--QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l--~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
+..++++|..||+|++|+|+.+||..+|+.+|. +..++..+|..+|.|++|.|+|+||+.++...... .. ....
T Consensus 10 e~~l~~~F~~fD~d~dG~Is~~El~~~l~~lg~~~s~~el~~lf~~~D~d~~G~I~f~EF~~~~~~l~~~--~e--l~~a 85 (624)
T 1djx_A 10 QHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFYKMLTQR--AE--IDRA 85 (624)
T ss_dssp ----------------------------------------------------------CTTHHHHHHTCC--HH--HHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhccH--HH--HHHH
Confidence 346899999999999999999999999998885 45567899999999999999999999998765221 11 1112
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhh-hhh-hhhhccccCchHHHHHHHHHhcCCCC---CchhhhhHHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGI-GEA-NVHKFLNTSGKKLADLYHELRTSSNC---PEIVTHFEGALSSLLDD 153 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l-g~~-~~~~~~~~~~eev~~l~~~l~~~~~~---p~ll~~~E~~i~~~~~~ 153 (593)
+...+. + .+......|..+|... |+. . +.+++..++..+ +.+. ..+..+|++|+..+.+.
T Consensus 86 F~~fD~-~---~G~Is~~EL~~fL~~~qge~~l-------s~ee~~~ii~~~--d~d~~~~~dG~Is~deF~~~L~s~ 150 (624)
T 1djx_A 86 FEEAAG-S---AETLSVERLVTFLQHQQREEEA-------GPALALSLIERY--EPSETAKAQRQMTKDGFLMYLLSA 150 (624)
T ss_dssp HHHHHT-T---SSSEEHHHHHHHHHHTSCCSSC-------SHHHHHHHHHHH--CCCHHHHHTTEECHHHHHHHHHST
T ss_pred HHHhcC-C---CCeecHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHh--CCChhhccCCCCCHHHHHHHhcCc
Confidence 222221 1 1223345688888754 554 3 788899999998 4431 24567899999988864
No 422
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=98.38 E-value=3.8e-07 Score=87.36 Aligned_cols=64 Identities=20% Similarity=0.414 Sum_probs=56.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC-------CCCHHHHHH----HHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF-------DIQPTDSDA----IFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-------~l~~~e~~~----i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+++++.+|..||.|++|+|+..||..++..+ .+++.+++. +|..+|.|+||.|+|+||+.++..
T Consensus 128 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~~~~~~~s~~e~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~ 202 (214)
T 2l4h_A 128 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 202 (214)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHSSSCTTCSCTHHHHHHHHHHHHHCCSCCSSBCSHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 4689999999999999999999999999855 466777664 999999999999999999998864
No 423
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=98.37 E-value=3.4e-07 Score=88.45 Aligned_cols=138 Identities=18% Similarity=0.162 Sum_probs=90.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHH-HHHcCCCC--HHHHHHHHHHh---------CCCCCCcccHHHHHHHHHHHhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRE-LCTGFDIQ--PTDSDAIFADL---------DHDGDGKVSLEDFAYGFREFLNS 70 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~-~l~~l~l~--~~e~~~i~~~~---------D~d~~G~i~~~eF~~~~~~~~~~ 70 (593)
..+++.+|..||.|++|+|+..||.. +++.+|++ ..++..+|..+ |.|++|.|+|+||+.++......
T Consensus 50 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~~~~~~ 129 (226)
T 2lvv_A 50 KSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRLMLCYI 129 (226)
T ss_dssp HHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHHHHHhc
Confidence 35789999999999999999999998 66666654 33555666666 99999999999999864322111
Q ss_pred hhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 71 DARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
. ........+...+... .+......|..++..++... . ..+++..++..+ +.+ ..+..+|++|+..+
T Consensus 130 ~-~~~~l~~~F~~~D~d~---dG~Is~~El~~~l~~~~~~g---~---~~~e~~~~~~~~--D~d-~dG~Is~~EF~~~~ 196 (226)
T 2lvv_A 130 Y-DIFELTVMFDTMDKDG---SLLLELQEFKEALPKLKEWG---V---DITDATTVFNEI--DTN-GSGVVTFDEFSCWA 196 (226)
T ss_dssp H-HHHHHHHHHHHHSCSS---CCEECHHHHHHHHHHHHHHT---C---CCCSCHHHHHHH--CCS-CSSCEEHHHHHHHH
T ss_pred c-CHHHHHHHHHHHcCCC---CCeEcHHHHHHHHHHHhhcC---C---CHHHHHHHHHHh--CCC-CCCcEeHHHHHHHH
Confidence 1 1111122222222221 22333456888887774421 1 334589999999 554 35567899999877
Q ss_pred HHH
Q psy8073 151 LDD 153 (593)
Q Consensus 151 ~~~ 153 (593)
.+.
T Consensus 197 ~~~ 199 (226)
T 2lvv_A 197 VTK 199 (226)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 424
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=98.36 E-value=5e-07 Score=98.15 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=60.5
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
+++.++.+|..||+|++|+|+.+||..++...+++..+++.+|..+|.|+||.|+|+||+.+|...
T Consensus 433 ~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 498 (504)
T 3q5i_A 433 SEERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKI 498 (504)
T ss_dssp CHHHHHHHHHHHCTTCCSEECHHHHHHHTTCSCCCHHHHHHHHHTTCSSCSSSEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCCcCcHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence 457889999999999999999999999998888999999999999999999999999999998765
No 425
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Probab=98.36 E-value=3.6e-07 Score=90.20 Aligned_cols=136 Identities=10% Similarity=0.116 Sum_probs=87.1
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHH----cCCC----CHHHHHH----HHHHhCCCCCCcccHHHHHHHHHHH--
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCT----GFDI----QPTDSDA----IFADLDHDGDGKVSLEDFAYGFREF-- 67 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~----~l~l----~~~e~~~----i~~~~D~d~~G~i~~~eF~~~~~~~-- 67 (593)
+..+++.+|..||.|++|+|+..||..+++ .+|. ++.++.. +|..+|.|++|.|+|+||+.++...
T Consensus 9 ~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~lg~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~ 88 (272)
T 2be4_A 9 DAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEE 88 (272)
T ss_dssp CHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHHSTTSCCCHHHHHHHHHHHSCHHHHTCCSEEEHHHHHHHHSCHHH
T ss_pred CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEeHHHHHHHHhhhhH
Confidence 467899999999999999999999999998 6665 5556654 5688999999999999999984210
Q ss_pred -----hhh---hhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhh----hhhhhhhccccCchHHHH----HHHHHh
Q psy8073 68 -----LNS---DARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGI----GEANVHKFLNTSGKKLAD----LYHELR 131 (593)
Q Consensus 68 -----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g~~~~~~~~~~~~eev~~----l~~~l~ 131 (593)
+.. ..........+...+.. ..+......|..++..+ |... +.+++.. ++..+
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~F~~~D~d---~~G~i~~~e~~~~l~~~~~~~g~~~-------~~~~~~~~~~~~~~~~- 157 (272)
T 2be4_A 89 NFLLIFRREAPLDNSVEFMKIWRKYDAD---SSGYISAAELKNFLKDLFLQHKKKI-------PPNKLDEYTDAMMKIF- 157 (272)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHCTT---CCSEEEGGGHHHHHHHHHHHTTCCC-------CHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhhccCcccHHHHHHHHHHhCCC---CCCccCHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHHh-
Confidence 000 01111111122222221 12223334577777666 4433 5555544 77777
Q ss_pred cCCCCCchhhhhHHHHHHH
Q psy8073 132 TSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 132 ~~~~~p~ll~~~E~~i~~~ 150 (593)
+.+ ..+..+|++|+..+
T Consensus 158 -D~~-~dg~i~~~ef~~~~ 174 (272)
T 2be4_A 158 -DKN-KDGRLDLNDLARIL 174 (272)
T ss_dssp -CSS-CSSEEEHHHHGGGS
T ss_pred -ccC-CCCcCcHHHHHHHH
Confidence 443 34567899987754
No 426
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=98.36 E-value=3.8e-07 Score=79.23 Aligned_cols=65 Identities=29% Similarity=0.531 Sum_probs=44.1
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHH---cCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCT---GFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~---~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+..++..+|..+|.+++|.|+..|+..++. ..+ .++.++..+|..+|.|++|.|+++||..++..
T Consensus 34 ~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~ 103 (134)
T 1jfj_A 34 NEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKK 103 (134)
T ss_dssp HHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Confidence 345677777777777777777777777775 222 23445667777777777777777777776643
No 427
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=98.35 E-value=3e-06 Score=71.35 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=80.0
Q ss_pred CCHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
+++++++.+|..+|. +|.|+..++..++.....+..++..+|..+|.|++|.|+++||..++..+.
T Consensus 6 ~s~~ei~~~~~~~d~--~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~------------ 71 (109)
T 5pal_A 6 LKADDINKAISAFKD--PGTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFS------------ 71 (109)
T ss_dssp SCHHHHHHHHHHTCS--TTCCCHHHHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHC------------
T ss_pred CCHHHHHHHHHHhCC--CCcCcHHHHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH------------
Confidence 468899999999997 899999999999986666788889999999999999999999998886531
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
.+|.. .+.+++..++..+ +.+ ..+..+|++|+..+.
T Consensus 72 -------------------------~~g~~-------~~~~~~~~~~~~~--D~~-~dg~i~~~eF~~~~~ 107 (109)
T 5pal_A 72 -------------------------AHGRD-------LNDTETKALLAAG--DSD-HDGKIGADEFAKMVA 107 (109)
T ss_dssp -------------------------TTCCC-------CCHHHHHHHHHHH--CTT-CSSSEEHHHHHHHHH
T ss_pred -------------------------HcCCC-------CCHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHH
Confidence 00111 1566788888888 443 345568999887654
No 428
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=98.35 E-value=3.6e-07 Score=84.77 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=55.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC-------CCHHHHHH----HHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD-------IQPTDSDA----IFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~-------l~~~e~~~----i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
...++.+|..||+|++|+|+..||..++..+| +++.++.. +|..+|.|++|.|+|+||+.++..
T Consensus 97 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~ 171 (183)
T 1dgu_A 97 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 171 (183)
T ss_dssp HHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHHHHHCS
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHh
Confidence 35899999999999999999999999999664 34556654 999999999999999999988753
No 429
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=98.35 E-value=1.7e-07 Score=108.66 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=87.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
.+++.+|..||+|++|+|+..||..++..+| ++..++..+|..+|.|++|.|+|+||+.+|...............+|
T Consensus 725 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~~l~~aF 804 (863)
T 1sjj_A 725 NEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASF 804 (863)
T ss_dssp HHHHHHHTTTCSSSSSEEESTTHHHHHHHHTCCCCTHHHHHHHHHHCTTSCSEEETTHHHHTHHHHSTTCSSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5789999999999999999999999999776 55678889999999999999999999999876532111111111122
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCC----CchhhhhHHHHHHHH
Q psy8073 82 GAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNC----PEIVTHFEGALSSLL 151 (593)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~----p~ll~~~E~~i~~~~ 151 (593)
..+ .. ..+......|..++ +.+++..++..+ +.++ ..+..+|++|+..+.
T Consensus 805 ~~~-~d---~~G~Is~~El~~~l--------------~~~~~~~l~~~~--d~~~~~~~~dg~I~~~eF~~~~~ 858 (863)
T 1sjj_A 805 KIL-AG---DKNYITVDELRREL--------------PPDQAEYCIARM--APYNGRDAVPGALDYMSFSTALY 858 (863)
T ss_dssp HGG-GT---SSSEEEHHHHHHHS--------------CHHHHHHHHHHS--EECCSSCCCTTEEESHHHHHHHS
T ss_pred HHH-hC---CCCcCcHHHHHHHC--------------CHHHHHHHHHHc--chhcCCCCCCCceeHHHHHHHHh
Confidence 111 11 11112222344433 356788888888 4332 356789999998764
No 430
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.35 E-value=6e-07 Score=89.81 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=69.0
Q ss_pred EEecCCch-hhhhhhHhhccCCCEEEEEEeCCChhcHH--HHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccccccccc
Q psy8073 445 LWDTAGQE-RFRSMTKNYFRRADGVMLLYDVTNERSFN--SVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCI 521 (593)
Q Consensus 445 l~DTaG~e-~~~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v 521 (593)
|-..||+. .........+..||+||+|+|+.+|.+.. .+..|+ .++|+++|+||+||.+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~-------- 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA-------- 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--------
Confidence 44578875 34556777889999999999999988764 344332 358999999999996531
Q ss_pred CHHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHh
Q psy8073 522 DREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYV 561 (593)
Q Consensus 522 ~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~~l~~ 561 (593)
..+....+....+.+++++||++|.|+.+++..+...+..
T Consensus 67 ~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 67 VTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 0111122333446788999999999999999988877654
No 431
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=98.34 E-value=5.6e-07 Score=97.15 Aligned_cols=65 Identities=20% Similarity=0.450 Sum_probs=59.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
+++++.+|..||+|++|+|+.+||..++...+++..+++.+|..+|.|+||.|+|+||+.+|..+
T Consensus 417 ~~~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~ 481 (484)
T 3nyv_A 417 RERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKL 481 (484)
T ss_dssp HHHHHHHHHHHCTTCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHhh
Confidence 46789999999999999999999999999888899999999999999999999999999998764
No 432
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=98.34 E-value=8.4e-07 Score=87.39 Aligned_cols=145 Identities=16% Similarity=0.285 Sum_probs=96.3
Q ss_pred CCHHHHHHHHhHhCCC-CCCcccHHHHHHHHHcCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhc
Q psy8073 1 MSDLQLEELFKTCDKK-GTGQIGPEEFRELCTGFD---IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLK 76 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~---l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~ 76 (593)
++.++++.+|..||.+ ++|+|+..+|..++..++ .+...+..+|..+|.|++|.|+|+||..++..+.... ....
T Consensus 88 ~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~-~~~~ 166 (256)
T 2jul_A 88 FTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGT-VHEK 166 (256)
T ss_dssp SCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCC-HHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccC-hHHH
Confidence 3678899999999876 899999999999999664 4566788999999999999999999999987753221 1111
Q ss_pred ccccCCCCCCCCCCCCCchhhhHHHHHHHhh----hhhhhhhc-cccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q psy8073 77 SNVNAGAMSSEGPERRNSDVQNAWSLLLAGI----GEANVHKF-LNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLL 151 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g~~~~~~~-~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~ 151 (593)
....+...+... .+......|..++..+ |....-.. -....+++..++..+ +.+. .+..+|++|+..+.
T Consensus 167 l~~~F~~~D~d~---dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~--D~d~-dG~Is~~Ef~~~~~ 240 (256)
T 2jul_A 167 LKWAFNLYDINK---DGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKM--DRNQ-DGVVTIDEFLETCQ 240 (256)
T ss_dssp HHHHHHHTCCSS---SSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHS--CCST-TCSBCHHHHHHHHH
T ss_pred HHHHHHHhCCCC---CCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHH--CCCC-CCcEeHHHHHHHHH
Confidence 222232233222 2222334577777666 31100000 001457899999998 5543 45668999988665
Q ss_pred H
Q psy8073 152 D 152 (593)
Q Consensus 152 ~ 152 (593)
.
T Consensus 241 ~ 241 (256)
T 2jul_A 241 K 241 (256)
T ss_dssp H
T ss_pred h
Confidence 4
No 433
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.34 E-value=1.3e-07 Score=93.50 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCch
Q psy8073 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452 (593)
Q Consensus 393 ~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e 452 (593)
++|+|+|.||||||||+|+|++..+ ..+++++|++.....+.++. .+.||||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 7999999999999999999998764 34566777766555555443 57999999964
No 434
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=98.34 E-value=5.9e-07 Score=86.93 Aligned_cols=64 Identities=22% Similarity=0.412 Sum_probs=56.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC--------------CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF--------------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--------------~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
++.++.+|..||+|++|+|+.+|+..++..+ .++..+++.+|..+|.|+||.|+|+||+.++..
T Consensus 137 ~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~ 214 (229)
T 3dd4_A 137 QEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214 (229)
T ss_dssp HHHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHh
Confidence 4678999999999999999999999999854 256678899999999999999999999998864
No 435
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=98.33 E-value=2.8e-06 Score=71.60 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=56.8
Q ss_pred CCHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.++++++.+|..+| ++|.|+..|+..++.....+..++..+|..+|.|++|+|+++||..++..
T Consensus 7 ~~~~ei~~~~~~~D--~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~ 70 (109)
T 3fs7_A 7 LSAKDIESALSSCQ--AADSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKN 70 (109)
T ss_dssp SCHHHHHHHHHHTC--STTCCCHHHHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGG
T ss_pred CCHHHHHHHHHhcC--CCCcCcHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHH
Confidence 36789999999999 89999999999999866667788899999999999999999999877643
No 436
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=98.31 E-value=6e-07 Score=83.11 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=46.1
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGF--DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
+...++.+|..+|.|++|.|+..|+..++..+ +.+..++..+|..+|.|++|.|+++||..++..+
T Consensus 54 ~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~ 121 (183)
T 1s6c_A 54 ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 121 (183)
T ss_dssp CHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 35566777777777777777777777776632 4666667777777777777777777777776554
No 437
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=98.31 E-value=4.9e-07 Score=92.36 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=58.7
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHH-HcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhh
Q psy8073 5 QLEELFKTCDKKGTGQIGPEEFRELC-TGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69 (593)
Q Consensus 5 ~l~~~F~~~D~d~~G~I~~~el~~~l-~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~ 69 (593)
.+..+|..||.|++|+|+..+|..++ ..+| +++.++..+|..+|.|++|.|+|+||+.+|..++.
T Consensus 254 ~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~ls~~e~~~l~~~~D~d~dG~Is~~EF~~~~~~~~~ 321 (323)
T 1ij5_A 254 VLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLMFH 321 (323)
T ss_dssp HHHHHHHHTCSSSCSSEEHHHHHHHHHHTTCCGGGCSTHHHHHHHHTTTTCSEECHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHhcC
Confidence 46789999999999999999999999 8777 67778999999999999999999999999987653
No 438
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=98.29 E-value=1.2e-06 Score=82.46 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=47.5
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGF--DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
..++.+|..+|.|++|+|+..|+..++..+ +.+...+..+|..+|.|++|+|+++||..++...
T Consensus 52 ~~~~~~f~~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~Ef~~~~~~~ 117 (198)
T 2r2i_A 52 KYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAI 117 (198)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHSSCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCeEcHHHHHHHHHHHccCchHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 347777888888888888888877777633 4667777777888888888888888887777654
No 439
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=98.29 E-value=1e-06 Score=81.97 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=51.9
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF--DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
...++.+|..+|.+++|.|+..|+..++..+ +.+..++..+|..+|.|++|.|+++||..++...
T Consensus 62 ~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~ 128 (190)
T 1fpw_A 62 EDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASV 128 (190)
T ss_dssp SHHHHHHHHTCCSSCSSEECHHHHHHHHHHHSCCCSTHHHHHHHHHHCSSCSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcEeHHHHHHHHHHHccCCcHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 3567788888888888888888888888743 4777888888888888888888888888887764
No 440
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=98.29 E-value=1.4e-06 Score=81.04 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=38.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC--------------CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF--------------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--------------~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
.++++.+|..+|.|++|+|+.+|+..++..+ ..+..++..+|..+|.|++|.|+|+||..++.
T Consensus 98 ~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (190)
T 2l2e_A 98 NDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSK 174 (190)
T ss_dssp HHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSCCCSSCCCTHHHHHHHHHHHTCCSSCCBCHHHHHHHHH
T ss_pred HHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccCcccccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4556666666666666666666666666541 13445556666666666666666666666654
No 441
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=98.29 E-value=8.7e-07 Score=81.40 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=48.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..++.+|..+|++++|+|+..|+..++..+| ++..+++.+|..+| |++|.|+|+||+.++..
T Consensus 77 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~ 140 (173)
T 1alv_A 77 KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVR 140 (173)
T ss_dssp HHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHH
Confidence 3567788888888888888888888887655 56667778888888 88888888888877754
No 442
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=98.28 E-value=8.3e-07 Score=96.19 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=56.2
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
++++++.+|..||+|++|+|+.+||..++...+++..+++.+|..+|.|+||.|+|+||+.+|..+
T Consensus 424 ~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 489 (494)
T 3lij_A 424 SKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKL 489 (494)
T ss_dssp CHHHHHHHHHHHCTTCSSEECHHHHHHHC-CCSCCCHHHHHHHHTTCSSSSSSEEHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCcCCHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhh
Confidence 356788899999999999999999999888777888888899999999999999999999888765
No 443
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=98.28 E-value=7.5e-07 Score=84.21 Aligned_cols=61 Identities=31% Similarity=0.489 Sum_probs=34.7
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcC----C---------------CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGF----D---------------IQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l----~---------------l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
++++.+|..||.|++|+|+.+||..++..+ | .+..++..+|..+|.|++|.|+|+||..++
T Consensus 95 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~ 174 (204)
T 1jba_A 95 HKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 174 (204)
T ss_dssp HHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 455556666666666666666666655543 1 223345566666666666666666666555
No 444
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=98.28 E-value=3e-06 Score=71.28 Aligned_cols=101 Identities=11% Similarity=0.162 Sum_probs=77.3
Q ss_pred CCHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
++++++..+|..+| ++|.|+..++..++.....+...+..+|..+|.|++|+|+++||..++..+.
T Consensus 6 ~~~~e~~~l~~~~d--~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~------------ 71 (108)
T 2pvb_A 6 LKDADVAAALAACS--AADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFS------------ 71 (108)
T ss_dssp SCHHHHHHHHHHTC--STTCCCHHHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTC------------
T ss_pred CCHHHHHHHHHHhC--CCCcCcHHHHHHHHhCChhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHh------------
Confidence 36789999999999 8899999999999865455677888999999999999999999988764320
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
..|.. .+.+++..++..+ +.+ ..+..+|++|+..+
T Consensus 72 -------------------------~~g~~-------~~~~~~~~~~~~~--D~~-~dg~i~~~eF~~~~ 106 (108)
T 2pvb_A 72 -------------------------PSARA-------LTDAETKAFLADG--DKD-GDGMIGVDEFAAMI 106 (108)
T ss_dssp -------------------------TTSCC-------CCHHHHHHHHHHH--CTT-CSSSBCHHHHHHHH
T ss_pred -------------------------ccCCC-------CCHHHHHHHHHHh--CCC-CCCcEeHHHHHHHH
Confidence 00111 1666788888888 443 34567899988754
No 445
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A
Probab=98.28 E-value=8.8e-08 Score=83.37 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=54.1
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
++++++|..|| |+|+..||+.+|+.+|.+..+++.+|..+|.|++|.|+|+||+.+|...
T Consensus 50 ~~l~~aF~~fD----G~I~~~El~~~l~~lG~t~~ei~~~~~~~D~d~dG~I~~~EF~~~~~~~ 109 (123)
T 2kld_A 50 DDISESLRQGG----GKLNFDELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEHEHQQMRDDL 109 (123)
T ss_dssp -CCSCSSTTTT----TCEEHHHHHHHTTTCCSSHHHHHHHHHHHSSSSCCEECSHHHHHCSCTT
T ss_pred HHHHHHHHHhC----CCCCHHHHHHHHHHhCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 45778899998 9999999999999999988899999999999999999999999987543
No 446
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=98.27 E-value=8e-07 Score=84.16 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=41.6
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF--DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
...++.+|..+|.+++|+|+..|+..++..+ +.+..++..+|..+|.|++|+|+++||..++..+
T Consensus 70 ~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~l~~~ 136 (207)
T 2d8n_A 70 KAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAI 136 (207)
T ss_dssp HHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHSCSSSSTTHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEeHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeEcHHHHHHHHHHH
Confidence 4456666666666666666666666666533 2666666666666666666666666666666543
No 447
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=98.27 E-value=3.9e-06 Score=70.60 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=57.0
Q ss_pred CCHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
++++++..+|..+| ++|.|+..++..++....-+...+..+|..+|.|++|+|+++||..++...
T Consensus 6 ~t~~e~~~~~~~~d--~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT--AADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGF 70 (109)
T ss_dssp SCHHHHHHHHHTTC--STTCCCHHHHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHcC--CCCcEeHHHHHHHHhcCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHH
Confidence 46889999999999 899999999999986444556778899999999999999999999988664
No 448
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=98.26 E-value=2.2e-06 Score=77.99 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=48.9
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..++.+|..+|+|++|+|+..|+..++..+| ++..++..++..+ |++|.|+|+||+.++..
T Consensus 70 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~~ 132 (165)
T 1k94_A 70 NAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY--SKNGRIFFDDYVACCVK 132 (165)
T ss_dssp HHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHH--CBTTBCBHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHH
Confidence 4577888888888888888888888888766 5667777888888 77888888888887765
No 449
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=98.25 E-value=1.2e-06 Score=84.46 Aligned_cols=64 Identities=25% Similarity=0.447 Sum_probs=53.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC----C------CC----HHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF----D------IQ----PTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l----~------l~----~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.++++.+|..||.|++|+|+.+||..++..+ | ++ ..+++.+|..+|.|++|.|+|+||+.++..
T Consensus 124 ~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~ 201 (224)
T 1s1e_A 124 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201 (224)
T ss_dssp HHHHHHHHHHHCTTCCSEECHHHHHHHHHHHHHHHTTCCCGGGCSSSHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCeECHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 4678899999999999999999999998764 4 22 256789999999999999999999988754
No 450
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=98.25 E-value=1.2e-06 Score=82.43 Aligned_cols=65 Identities=18% Similarity=0.408 Sum_probs=55.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC---------CCHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD---------IQPTDSDAIFADLDH-DGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~---------l~~~e~~~i~~~~D~-d~~G~i~~~eF~~~~~~~ 67 (593)
...++.+|..+|.|++|+|+.+||..++..++ .+..+++.+|..+|. |++|.|+|+||+..|..+
T Consensus 108 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~dg~Is~~EF~~~~~~~ 182 (204)
T 3e3r_A 108 EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGV 182 (204)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHHHTTSSCHHHHHHHHHHHHSCSSCCSCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCCeEeHHHHHHHHccccCCccccCCCChHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHc
Confidence 35788999999999999999999999998542 334567899999998 999999999999998775
No 451
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=98.24 E-value=5.5e-06 Score=69.72 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
+++.++..+|..+| ++|.|+..++..++....-+...+..+|..+|.|++|.|+++||..++..+.
T Consensus 7 ~~~~e~~~~~~~~d--~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~------------ 72 (109)
T 1bu3_A 7 LADADVAAALKACE--AADSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFS------------ 72 (109)
T ss_dssp SCHHHHHHHHHHTC--STTCCCHHHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHS------------
T ss_pred CCHHHHHHHHHHhC--CCCcCcHHHHHHHHHcChhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHc------------
Confidence 36789999999999 8999999999998865445567788999999999999999999998886531
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
..|.. .+.+++..++..+ +.+ ..+..+|++|+..+
T Consensus 73 -------------------------~~g~~-------~~~~~~~~~~~~~--D~~-~dg~i~~~eF~~~~ 107 (109)
T 1bu3_A 73 -------------------------AGARA-------LTDAETKAFLKAG--DSD-GDGAIGVDEWAALV 107 (109)
T ss_dssp -------------------------TTCCC-------CCHHHHHHHHHHH--CTT-CSSEECHHHHHHHH
T ss_pred -------------------------ccCCC-------CCHHHHHHHHHHh--CCC-CCCcEeHHHHHHHH
Confidence 00111 1566788888888 443 34557899888754
No 452
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.24 E-value=1.2e-06 Score=92.30 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=77.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhc------Cccc---cC------------CCCccceeeEEEEEEEC------------
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSK------EVFL---NK------------LGSTLGVDFQMKTIRVD------------ 437 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~------~~~~---~~------------~~~t~g~~~~~~~~~~~------------ 437 (593)
++..|+++|.+||||||++..|.. ..+. .. +....|.++.......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999873 2110 00 00112222221100000
Q ss_pred -CeeEEEEEEecCCchh----h-hhhh-HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCC
Q psy8073 438 -ERNVALQLWDTAGQER----F-RSMT-KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510 (593)
Q Consensus 438 -~~~~~~~l~DTaG~e~----~-~~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~ 510 (593)
..++.+.|+||||... . ..+. ......+|.+++|+|++....... ....+.. .-.+..||.||+|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~---~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKE---ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHH---SCTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHh---hCCCeEEEEECCCCc
Confidence 0125689999999321 1 1111 122346899999999987543222 1222222 113567999999986
Q ss_pred CccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCC
Q psy8073 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN 547 (593)
Q Consensus 511 ~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~g 547 (593)
.. ......+....+.++.++++ |.+
T Consensus 253 ~~----------gG~~ls~~~~~g~PI~fig~--Ge~ 277 (443)
T 3dm5_A 253 AK----------GGGALSAVAATGAPIKFIGT--GEK 277 (443)
T ss_dssp SS----------HHHHHHHHHTTCCCEEEEEC--SSS
T ss_pred cc----------ccHHHHHHHHHCCCEEEEEc--CCC
Confidence 43 11223344567888777775 554
No 453
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=98.24 E-value=1.5e-06 Score=80.82 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=37.8
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGF--DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..++.+|..+|.|++|.|+..|+..++..+ +.+...+..+|..+|.|++|.|+++||..++..
T Consensus 63 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~ 127 (190)
T 1g8i_A 63 KFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDA 127 (190)
T ss_dssp HHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEeHHHHHHHHHHhcCCCHHHHHHHHHHhhcCCCCCeECHHHHHHHHHH
Confidence 445566666666666666666666665532 355555666666666666666666666665554
No 454
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=98.24 E-value=1.6e-06 Score=82.65 Aligned_cols=63 Identities=27% Similarity=0.558 Sum_probs=50.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC-------CCHH-HHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD-------IQPT-DSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~-------l~~~-e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
.++++.+|..||.|++|+|+..||..++..++ +++. .++.+|..+|.|++|.|+|+||+.++.
T Consensus 92 ~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 162 (211)
T 2ggz_A 92 EQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMA 162 (211)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHTTSSCCCSCTHHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 45788888888888888888888888887543 3443 367888888888888888888888775
No 455
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=98.23 E-value=2.4e-06 Score=77.93 Aligned_cols=61 Identities=18% Similarity=0.391 Sum_probs=44.8
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..++.+|..+|.|++|+|+..|+..++..+| +++.++..+|..+ |++|.|+|+||+.++..
T Consensus 72 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~~ 134 (167)
T 1gjy_A 72 NGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY--STSGKITFDDYIACCVK 134 (167)
T ss_dssp HHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHHT--CBTTBEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh--CcCCcCcHHHHHHHHHH
Confidence 3566777778888888888888877777665 5566777777777 67777888888777654
No 456
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=98.23 E-value=2.6e-06 Score=80.59 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=53.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHH------cCCCCHHHHH----HHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCT------GFDIQPTDSD----AIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~------~l~l~~~e~~----~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.++++.+|..||.|++|+|+.+||..++. +..+++.+++ .+|..+|.|++|.|+|+||..++..
T Consensus 110 ~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 183 (207)
T 2ehb_A 110 HEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183 (207)
T ss_dssp HHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 46789999999999999999999999985 3347777765 4556999999999999999998865
No 457
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=98.23 E-value=3.2e-07 Score=99.18 Aligned_cols=66 Identities=30% Similarity=0.567 Sum_probs=35.7
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
++.++.+|..||+|++|+|+.+||..++..+| ++..+++.+|..+|.|+||.|+|+||+.+|..+.
T Consensus 416 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~ 483 (486)
T 3mwu_A 416 RERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFV 483 (486)
T ss_dssp HHHHHHHHHHHCSSCSSSBCSSCC--------------------CCCCSSCSSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHhh
Confidence 45677777777777777777777777777665 5566667777777777777777777777776653
No 458
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=98.21 E-value=2.8e-06 Score=81.89 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=53.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHH----cCC--CCHHHHH----HHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCT----GFD--IQPTDSD----AIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~----~l~--l~~~e~~----~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.++++.+|..||.|++|+|+.+||..++. .+| +++.+++ .+|..+|.|++|.|+|+||..++..
T Consensus 121 ~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~~~~ 194 (226)
T 2zfd_A 121 DDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 194 (226)
T ss_dssp HHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 46789999999999999999999999985 344 6677665 4556999999999999999998865
No 459
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=98.21 E-value=8e-06 Score=68.75 Aligned_cols=101 Identities=11% Similarity=0.225 Sum_probs=76.9
Q ss_pred CCHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
+++.++..+|..+| ++|.|+..++..++....-+...+..+|..+|.|++|+|+++||..++..+.
T Consensus 7 ~t~~e~~~~~~~~d--~~g~i~~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~------------ 72 (110)
T 1pva_A 7 LKADDIKKALDAVK--AEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFA------------ 72 (110)
T ss_dssp SCHHHHHHHHHHTC--STTCCCHHHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTC------------
T ss_pred CCHHHHHHHHHhcC--CCCcCcHHHHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHh------------
Confidence 36789999999999 8999999999999864445567788999999999999999999998774320
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSL 150 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~ 150 (593)
..|.. .+.+++..++..+ +.+ ..+..+|++|+..+
T Consensus 73 -------------------------~~g~~-------~~~~~~~~~~~~~--d~~-~dg~i~~~eF~~~~ 107 (110)
T 1pva_A 73 -------------------------ADGRD-------LTDAETKAFLKAA--DKD-GDGKIGIDEFETLV 107 (110)
T ss_dssp -------------------------TTCCC-------CCHHHHHHHHHHH--CTT-CSSSBCHHHHHHHH
T ss_pred -------------------------hcCCC-------CCHHHHHHHHHHh--CCC-CCCeEcHHHHHHHH
Confidence 00111 1566788888888 443 34557899888754
No 460
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.3
Probab=98.19 E-value=6e-07 Score=79.57 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=56.2
Q ss_pred HHHHHHhHhCCC-CCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 5 QLEELFKTCDKK-GTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 5 ~l~~~F~~~D~d-~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.++-.|..+|.| ++|+|+..||..+++.+..+...+..+|..+|.|+||.||++||+.+|..
T Consensus 78 ~l~W~F~~lD~n~~DG~Isr~EL~~i~~~l~~~e~cv~~ff~~cD~d~Dg~ISl~Ew~~Clg~ 140 (151)
T 1sra_A 78 PVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 140 (151)
T ss_dssp HHHHHHHHHCCTTCSSEECTTTTGGGGSTTSTTGGGHHHHHHHHCTTCSSSEEHHHHHHHTTC
T ss_pred HHHhHHHHHCCCCCCCcCcHHHHHHHHHHhcChHHHHHHHHHHhCCCCCCcCCHHHHHHHhCC
Confidence 677899999997 99999999999999877666667889999999999999999999999854
No 461
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=98.19 E-value=2e-06 Score=90.84 Aligned_cols=63 Identities=30% Similarity=0.588 Sum_probs=56.1
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
.+.++.+|..||+|++|+|+.+||..+|..+| ++..+++.+|..+|.|++|.|+|+||+.+|.
T Consensus 384 ~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L~ 448 (450)
T 3sg6_A 384 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 448 (450)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTSSSSEEHHHHHHHHC
T ss_pred hhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 45788999999999999999999999999665 7788889999999999999999999998874
No 462
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=98.19 E-value=4.9e-06 Score=69.88 Aligned_cols=64 Identities=16% Similarity=0.354 Sum_probs=55.5
Q ss_pred CCHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+++++++.+|..+| ++|.|+..++..++.....+...+..+|..+|.|++|+|+++||..++..
T Consensus 6 ~t~~e~~~~~~~~d--~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 69 (108)
T 1rro_A 6 LSAEDIAAALQECQ--DPDTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQK 69 (108)
T ss_dssp SCHHHHHHHHHHTC--STTCCCHHHHHHHHSGGGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGG
T ss_pred CCHHHHHHHHHHcc--CCCCcCHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 46889999999998 89999999999998644456777889999999999999999999877643
No 463
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.19 E-value=3.3e-06 Score=95.94 Aligned_cols=139 Identities=8% Similarity=0.064 Sum_probs=89.9
Q ss_pred HHHHHHHHh--HhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCC-------CCCCcccHHHHHHHHHHHhhhhhh
Q psy8073 3 DLQLEELFK--TCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDH-------DGDGKVSLEDFAYGFREFLNSDAR 73 (593)
Q Consensus 3 ~~~l~~~F~--~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~-------d~~G~i~~~eF~~~~~~~~~~~~~ 73 (593)
+..++++|. .||+|++|.|+..||..+|+. ...++..++..+|. +++|.|+|+||+.+|.....
T Consensus 145 ~~~Lk~~F~~~~fD~d~dG~Is~~EL~~~l~~---~~~ev~~li~~~d~~~~~~D~d~~g~idf~EF~~~~~~l~~---- 217 (799)
T 2zkm_X 145 STFLDKILVKLKMQLNSEGKIPVKNFFQMFPA---DRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLCP---- 217 (799)
T ss_dssp HHHHHHHHHHHHHSCCTTSCEEHHHHHHHSCS---CHHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHSC----
T ss_pred HHHHHHHhHHhccCCCCCCeECHHHHHHHHhh---hHHHHHHHHHHhCcCccccccCCCCcCCHHHHHHHHHHccC----
Confidence 457899999 899999999999999999975 36788899999985 88999999999999977531
Q ss_pred hhcccccCCCCCCCCCCCCCchhhhHHHHHHHhh-hhhhhhh--ccccCchHHHHHHHHHhcCCCC---CchhhhhHHHH
Q psy8073 74 RLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGI-GEANVHK--FLNTSGKKLADLYHELRTSSNC---PEIVTHFEGAL 147 (593)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-g~~~~~~--~~~~~~eev~~l~~~l~~~~~~---p~ll~~~E~~i 147 (593)
......+|...+.. ..+..+...|+.+|..+ |+..+-. |-.-+.+++..++..+ +.+. ..+..+|++|+
T Consensus 218 r~el~~aF~~fD~d---~~g~Is~~eL~~fL~~~Qge~~~~~~~~~~~t~ee~~~iI~~~--d~d~~~~~dg~is~eeF~ 292 (799)
T 2zkm_X 218 RPEIDEIFTSYHAK---AKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKY--EPSGINAQRGQLSPEGMV 292 (799)
T ss_dssp CHHHHTTCC-----------CCCHHHHHHHHHHTCC---------------CHHHHHHHH--CCC--------CCHHHHH
T ss_pred HHHHHHHHHHhccC---CCCeEcHHHHHHHHHHhcCCcccccccccCCCHHHHHHHHHHh--hcccccccCCccchhhhh
Confidence 11122333333322 12233445699999887 6641000 0001678899999998 4432 34667999999
Q ss_pred HHHHHH
Q psy8073 148 SSLLDD 153 (593)
Q Consensus 148 ~~~~~~ 153 (593)
..+.+.
T Consensus 293 ~~L~S~ 298 (799)
T 2zkm_X 293 WFLCGP 298 (799)
T ss_dssp HHHHST
T ss_pred hcccCc
Confidence 999875
No 464
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=98.18 E-value=1.9e-06 Score=84.76 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=45.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF--DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
...++.+|..+|.|++|+|+..|+..++..+ +.+..++..+|..+|.|++|+|+++||..++..+
T Consensus 128 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~ 194 (256)
T 2jul_A 128 TTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSI 194 (256)
T ss_dssp HHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4556777777777777777777777776633 4556666777777777777777777777776654
No 465
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=98.16 E-value=2.7e-06 Score=79.30 Aligned_cols=63 Identities=30% Similarity=0.546 Sum_probs=42.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHc----CC----CCH------HHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTG----FD----IQP------TDSDAIFADLDHDGDGKVSLEDFAYGFR 65 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~----l~----l~~------~e~~~i~~~~D~d~~G~i~~~eF~~~~~ 65 (593)
...++.+|..+|.|++|+|+..|+..++.. +| ++. ..+..+|..+|.|++|.|+|+||..++.
T Consensus 98 ~~~~~~~f~~~D~d~~G~I~~~E~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (193)
T 1bjf_A 98 EQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAK 174 (193)
T ss_dssp HHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCCeECHHHHHHHHHHHHHHhccccCCCcccccHHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 456677777777777777777777777753 23 332 2356777777777777777777777664
No 466
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=98.15 E-value=3.8e-06 Score=78.97 Aligned_cols=61 Identities=18% Similarity=0.396 Sum_probs=46.3
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
..++.+|..+|+|++|+|+..|+..++..+| ++..+++.+|..+ |++|.|+|+||+..+..
T Consensus 103 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~--d~dg~i~~~eF~~~~~~ 165 (198)
T 1juo_A 103 NGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY--STNGKITFDDYIACCVK 165 (198)
T ss_dssp HHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT--CSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHH
Confidence 3567778888888888888888888887665 5666777788777 77788888888877654
No 467
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.12 E-value=5.9e-06 Score=90.35 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=75.0
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccC
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 81 (593)
+...|..+|..+|.. +|+|+..+.+.+|...|++.+.+.+||..+|.|++|+++++||+.+|+.+.....+...|...+
T Consensus 456 ~~~~y~~~F~~~~~~-~g~i~g~~a~~~~~~s~Lp~~~L~~IW~l~D~~~~g~L~~~eF~~am~Li~~~~~g~~lP~~lp 534 (550)
T 2qpt_A 456 DKSKYDEIFYNLAPA-DGKLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFALASHLIEAKLEGHGLPTNLP 534 (550)
T ss_dssp THHHHHHHHHHTCCS-SSEECHHHHHHHHHHTTCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHHHHHHHHSCCCCSSCC
T ss_pred HHHHHHHHHHhcCCC-CCeecHHHHHHHHHHcCCCHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 367899999999965 5999999999999999999999999999999999999999999999998876555445555666
Q ss_pred CCCCCCCCC
Q psy8073 82 GAMSSEGPE 90 (593)
Q Consensus 82 ~~~~~~~~~ 90 (593)
..+++|...
T Consensus 535 ~~l~p~s~r 543 (550)
T 2qpt_A 535 RRLVPPSKR 543 (550)
T ss_dssp GGGSCSSCC
T ss_pred cccCChhhC
Confidence 666666543
No 468
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.12 E-value=3.9e-06 Score=91.81 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=40.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCccceeeEEEEE--EE-CCeeEEEEEEecCCch
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFL-NKLGSTLGVDFQMKTI--RV-DERNVALQLWDTAGQE 452 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~g~~~~~~~~--~~-~~~~~~~~l~DTaG~e 452 (593)
.+.++|+|+|.||||||||+|+|++.... ...++|.+++...... .+ ...+..+.|+||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 45689999999999999999999987532 2222232333222211 11 1223578999999954
No 469
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}
Probab=98.12 E-value=7.5e-06 Score=75.95 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=89.2
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHHhhhhhhhhcccc
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLD---HDGDGKVSLEDFAYGFREFLNSDARRLKSNV 79 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D---~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~ 79 (593)
-.+++.+|..+| ++|+|+.++|..++ +++.+...+..+|..+| .+++|.|+|++|...+..+.. .........
T Consensus 27 ~~~~~~~F~~~D--~dG~I~~~el~~~l-g~~~~~~~~~~i~~~~d~~~~~~~~~i~~~ef~~~~~~~~~-~~~~~~l~~ 102 (179)
T 3a8r_A 27 WAAVEKRFNQLQ--VDGVLLRSRFGKCI-GMDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTD-QGFDNRLRT 102 (179)
T ss_dssp HHHHHHHHHHHC--BTTBEEGGGHHHHH-TCCSCHHHHHHHHHHHHHHHTCCSSEECHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHHHhccC--CCCCCcHHHHHHHH-CCCCcHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHcC-CCHHHHHHH
Confidence 368899999999 89999999999976 33444556778998887 467889999999988755421 111122223
Q ss_pred cCCCCCCCCCCCCCchhhhHHHHHHH-hhhhhhh--hhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 80 NAGAMSSEGPERRNSDVQNAWSLLLA-GIGEANV--HKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~lg~~~~--~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
.|...+.... +......+..++. .+|.... +.. .+.+++..++..+ +.+ ..+..+|++|+..+..
T Consensus 103 ~F~~~D~d~d---G~Is~~El~~~l~~~~g~~~~~~~~~--~~~~~~~~~~~~~--D~d-~dG~I~~~EF~~~~~~ 170 (179)
T 3a8r_A 103 FFDMVDKNAD---GRLTAEEVKEIIALSASANKLSKIKE--RADEYTALIMEEL--DPT-NLGYIEMEDLEALLLQ 170 (179)
T ss_dssp HHHHHCTTCS---SCBCHHHHHHHHHHHHHTTHHHHHHH--HHHHHHHHHHHHH--STT-CCSEECHHHHHHHHC-
T ss_pred HHHHHCCCCC---CcCCHHHHHHHHHHHhcccccccccc--chHHHHHHHHHHh--CCC-CCCcCcHHHHHHHHHh
Confidence 3333333222 2223345778886 6765310 000 1567899999999 554 3456789999886654
No 470
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=98.07 E-value=2.1e-06 Score=99.91 Aligned_cols=128 Identities=13% Similarity=0.192 Sum_probs=88.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHcC----------CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhh
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF----------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDA 72 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l----------~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 72 (593)
..+++++|..+| +++|.|+..||+.+|..+ +++..++..||..+|.|++|.|+|+||+..+....
T Consensus 533 ~~~l~~~F~~~D-~~dG~Is~~El~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~~G~I~~~EF~~~~~~~~---- 607 (900)
T 1qxp_A 533 DDNFKTLFSKLA-GDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIR---- 607 (900)
T ss_dssp --------CCCC-CSSSSCCCSCTTTTTCC---------CCCCCHHHHHHHHHHHCC--CCCCCSSSHHHHHHHHH----
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHhhcccccccCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHH----
Confidence 357899999999 999999999999999976 46678889999999999999999999999886541
Q ss_pred hhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH
Q psy8073 73 RRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLD 152 (593)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~ 152 (593)
.....+...+... .+......+..++..+|... +.+++..++..+ + +..+..+|++|+..+..
T Consensus 608 ---~l~~~F~~~D~d~---~G~Is~~El~~~l~~~g~~l-------~~~~~~~l~~~~--d--d~dg~I~~~eF~~~~~~ 670 (900)
T 1qxp_A 608 ---NYLTIFRKFDLDK---SGSMSAYEMRMAIEAAGFKL-------PCQLHQVIVARF--A--DDELIIDFDNFVRCLVR 670 (900)
T ss_dssp ---HHHHHHGGGCTTC---CSCCBHHHHHHHHHHTTEEC-------CHHHHHHHHHHT--S--CSSSBCCHHHHHHHHHH
T ss_pred ---HHHHHHHhhCCCC---CCeECHHHHHHHHHHhCCCC-------CHHHHHHHHHHh--C--CCCCeEcHHHHHHHHHH
Confidence 1112222222221 22233456888998888655 788899999988 4 45677899999987664
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.04 E-value=2.7e-06 Score=90.03 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC------ccc---cCCC------------CccceeeEEEE--------E----EECC
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKE------VFL---NKLG------------STLGVDFQMKT--------I----RVDE 438 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~------~~~---~~~~------------~t~g~~~~~~~--------~----~~~~ 438 (593)
...|+|+|.+||||||+++.|... .+. ..+. ...|.++.... + .-..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998752 110 0000 00011111000 0 0001
Q ss_pred eeEEEEEEecCCchhh-----hhhh-HhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCC-c-EEEEEeCCCCC
Q psy8073 439 RNVALQLWDTAGQERF-----RSMT-KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSI-P-IVICANKVDLR 510 (593)
Q Consensus 439 ~~~~~~l~DTaG~e~~-----~~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~-p-iivV~NK~Dl~ 510 (593)
..+.+.|+||||.... ..+. ...+..+|.+++|+|++.... ... .+..... .+ | ..+|.||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~---~~~~~~~-~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI---QAKAFKE-AVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH---HHHHHHT-TSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH---HHHHHhh-cccCCeEEEEeCCCCc
Confidence 2356899999995322 1111 112236899999999976542 111 1222222 24 5 78999999975
Q ss_pred C
Q psy8073 511 A 511 (593)
Q Consensus 511 ~ 511 (593)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 3
No 472
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=98.02 E-value=7e-06 Score=72.31 Aligned_cols=100 Identities=8% Similarity=-0.061 Sum_probs=53.7
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCCC---CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhccccc
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDI---QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVN 80 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l---~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 80 (593)
...+++|..+|.|++|.|+..++..++..... +..++..+|..+|.|++|+|+++||..++..+
T Consensus 3 p~~~~l~~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~------------- 69 (135)
T 3h4s_E 3 PTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGIL------------- 69 (135)
T ss_dssp ----------------CCCC-----------CHHHHHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGG-------------
T ss_pred hhHHHHHHHHcCCCCCcEeHHHHHHHHHHHccccchHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-------------
Confidence 34678999999999999999999998874321 23456799999999999999999998876432
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHhhh-hhhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH
Q psy8073 81 AGAMSSEGPERRNSDVQNAWSLLLAGIG-EANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLDD 153 (593)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg-~~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~~~~~ 153 (593)
| ... +.+++..++..+ +.+ ..+..+|++|+..+..-
T Consensus 70 ---------------------------g~~~~-------~~~e~~~~~~~~--D~d-~dG~I~~~EF~~~~~~~ 106 (135)
T 3h4s_E 70 ---------------------------GIEGM-------SKEDAQGMVREG--DLD-GDGALNQTEFCVLMVRL 106 (135)
T ss_dssp ---------------------------TCCCC-------CHHHHHHHHHHH--CSS-CSSSBCHHHHHHHHHHH
T ss_pred ---------------------------CCCCC-------CHHHHHHHHHHh--CCC-CCCCCcHHHHHHHHHHh
Confidence 2 111 667788888888 443 34567899998876653
No 473
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.89 E-value=4.9e-06 Score=82.18 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=60.5
Q ss_pred cCCchhh-hhhhHhhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHH
Q psy8073 448 TAGQERF-RSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVG 526 (593)
Q Consensus 448 TaG~e~~-~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~ 526 (593)
.||+... .......+.++|+||+|+|+.+|.+..+.. +. .. ++|.|+|+||+||.+... ....
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~~--------~~~~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEKT--------TKKW 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHHH--------HHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHHH--------HHHH
Confidence 4776533 345667789999999999999987654211 11 11 589999999999975310 1111
Q ss_pred HHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q psy8073 527 EKLAQQYGAIFMETSSKSGDNILDALIALSR 557 (593)
Q Consensus 527 ~~l~~~~~~~~~e~Sa~~g~gi~~l~~~L~~ 557 (593)
..+....+.++ .+||++|.|+.+++..|..
T Consensus 68 ~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 68 VEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 22333456777 8999999999998877643
No 474
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.89 E-value=1.5e-05 Score=84.06 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=77.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhc------Ccccc---C------------CCCccceeeEEEEEE-------------E
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSK------EVFLN---K------------LGSTLGVDFQMKTIR-------------V 436 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~------~~~~~---~------------~~~t~g~~~~~~~~~-------------~ 436 (593)
.+..|+++|++||||||++..|.. ..+.- . .....|.++...... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 457889999999999999999863 11100 0 001122222211000 0
Q ss_pred CCeeEEEEEEecCCchh------h-hhhhH-hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCC
Q psy8073 437 DERNVALQLWDTAGQER------F-RSMTK-NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVD 508 (593)
Q Consensus 437 ~~~~~~~~l~DTaG~e~------~-~~~~~-~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~D 508 (593)
....+.+.|+||||.-. + ..+.. ......|.+++|+|++....... ....+.... .+..||+||+|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD 249 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMD 249 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEeccc
Confidence 11135678999999432 1 11111 11225799999999986543222 222333222 36789999999
Q ss_pred CCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 509 l~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
.... ......+....+.|+.++++ |.++
T Consensus 250 ~~a~----------~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GTAK----------GGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp GCSC----------HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred cccc----------chHHHHHHHHHCCCEEEEEC--CCCh
Confidence 7532 12233345567888887875 6654
No 475
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=97.85 E-value=7.3e-06 Score=73.06 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=26.2
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHHcC------CCC-HHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 7 EELFKTCDKKGTGQIGPEEFRELCTGF------DIQ-PTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 7 ~~~F~~~D~d~~G~I~~~el~~~l~~l------~l~-~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
...|..+|.|++|+|+.+|+..++..+ ... ...+..+|..+|.|++|+|+++||..++..+
T Consensus 30 ~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~ 97 (143)
T 3a4u_B 30 FSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHV 97 (143)
T ss_dssp ---------------------------------CCCHHHHHHHHHHHTCTTCSSCEEHHHHHHTCC--
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHHhcccccccCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHH
Confidence 357999999999999999999988754 122 3457789999999999999999999887543
No 476
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=97.81 E-value=3.7e-06 Score=70.65 Aligned_cols=65 Identities=18% Similarity=0.411 Sum_probs=55.1
Q ss_pred CCHHHHHHHHhHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 1 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
++++++..+|..+| ++|.|+..++..++.....+...+..+|..+|.|++|+|+++||..++..+
T Consensus 6 ~~~~e~~~l~~~~d--~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (108)
T 2kyc_A 6 LSPSDIAAALRDCQ--APDSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRF 70 (108)
T ss_dssp SCHHHHHHHHTTSC--STTTCCHHHHHHHHTCTTCCSSSHHHHCSSSCSCCSSCCCGGGTTTSHHHH
T ss_pred CCHHHHHHHHHHcC--CCCcCCHHHHHHHHhhCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 46789999999998 889999999999886444455678899999999999999999998887654
No 477
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=97.79 E-value=3.3e-05 Score=87.22 Aligned_cols=63 Identities=13% Similarity=0.267 Sum_probs=57.0
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~ 67 (593)
.+++.+|..||+|++|+|+..||..+|..+| ++..+++.+|..+| |++|.|+|+||+.++...
T Consensus 605 ~~l~~~F~~~D~d~dG~Is~~El~~~L~~~G~~ls~~~~~~l~~~~D-d~dG~Isf~EF~~~l~~~ 669 (714)
T 3bow_A 605 QKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVRL 669 (714)
T ss_dssp HHHHHHHHHHCTTCCSSEEHHHHHHHHHHTTEECCHHHHHHHHHHHS-CTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCeEcHHHHHHHHHHH
Confidence 4678999999999999999999999999887 77888999999999 999999999999988653
No 478
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=97.73 E-value=0.00017 Score=70.30 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=52.8
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy8073 7 EELFKTCDKKGTGQIGPEEFRELCTGF--DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFL 68 (593)
Q Consensus 7 ~~~F~~~D~d~~G~I~~~el~~~l~~l--~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~ 68 (593)
.-+|+.||.|++|+|+..++..++.-+ |-..+.+.-+|..+| |+||.|+..|+..++..+.
T Consensus 135 ~~lf~~FD~~~~G~I~f~ef~~aLs~l~rG~leeKL~w~F~lyD-D~~G~I~~~El~~il~~i~ 197 (261)
T 1eg3_A 135 NWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSI 197 (261)
T ss_dssp HHHHHHHCTTCCSEEEHHHHHHHHHHTSSSCHHHHHHHHHHHHS-CTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCceEeHHHHHHHHHHHcCCCHHHHHHHHHheee-CCCCCCcHHHHHHHHHHHH
Confidence 448999999999999999999999844 444556789999999 9999999999999997753
No 479
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.69 E-value=7.4e-05 Score=82.73 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=40.6
Q ss_pred EEEEEecCCc-------------hhhhhhhHhhccCC-CEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCC
Q psy8073 442 ALQLWDTAGQ-------------ERFRSMTKNYFRRA-DGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507 (593)
Q Consensus 442 ~~~l~DTaG~-------------e~~~~~~~~~~~~a-d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~ 507 (593)
.+.|.|.||. .....+...|+... .+++++.+.+....-.. .+..+....+.+.+.|+|+||.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~---~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE---ALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH---HHHHHHHHCSSCCSEEEEEECG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH---HHHHHHHHhhcCCceEEEecch
Confidence 3789999972 12344556665544 55566666543221111 2234555566678999999999
Q ss_pred CCCCc
Q psy8073 508 DLRAD 512 (593)
Q Consensus 508 Dl~~~ 512 (593)
|+...
T Consensus 225 Dlv~~ 229 (608)
T 3szr_A 225 DLVDK 229 (608)
T ss_dssp GGSSS
T ss_pred hhcCc
Confidence 98754
No 480
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=6.8e-05 Score=75.33 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC------ccc---cC-CCC-----------ccceeeEEEE-------E------EEC
Q psy8073 392 AFKIVFAGDAAVGKSCFIYRFSKE------VFL---NK-LGS-----------TLGVDFQMKT-------I------RVD 437 (593)
Q Consensus 392 ~~kI~ivG~~nvGKSSLln~l~~~------~~~---~~-~~~-----------t~g~~~~~~~-------~------~~~ 437 (593)
+..|+++|++|+||||++..|... .+. .. ..+ ..|.++.... + .+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999988632 110 00 000 0122221100 0 000
Q ss_pred CeeEEEEEEecCCchh--hh-hhhH-----hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCC
Q psy8073 438 ERNVALQLWDTAGQER--FR-SMTK-----NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVD 508 (593)
Q Consensus 438 ~~~~~~~l~DTaG~e~--~~-~~~~-----~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~D 508 (593)
...+.+.|+||||... .. .+.. ..+..+|.+++|+|++.... .......+. . ..| ..+|.||+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~---~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFN---Q-ASKIGTIIITKMD 250 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHH---H-TCTTEEEEEECGG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHH---h-hCCCCEEEEeCCC
Confidence 0235689999999654 21 1111 13447999999999975422 111112222 1 256 678999999
Q ss_pred CCCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 509 l~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
.... ......+....+.++.+++ +|.+++++
T Consensus 251 ~~~~----------~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTAK----------GGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCTT----------HHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred CCcc----------hHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 7532 1223345667788877776 57776543
No 481
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=97.56 E-value=0.00012 Score=85.13 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=56.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHcCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFD--IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 4 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~--l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.+++.+|..||.|++|+|+..||..++..+| ++..+++.+|..+| |++|.|+|+||+.++..
T Consensus 607 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~l~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~ 670 (900)
T 1qxp_A 607 RNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVR 670 (900)
T ss_dssp HHHHHHHGGGCTTCCSCCBHHHHHHHHHHTTEECCHHHHHHHHHHTS-CSSSBCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHhC-CCCCeEcHHHHHHHHHH
Confidence 4688999999999999999999999999887 77888999999999 99999999999988764
No 482
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.54 E-value=9e-06 Score=87.37 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=68.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccccCCCCccceeeEEEEEEECCeeEEEEEEecCCchhh--hhhh--------H
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERF--RSMT--------K 459 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~l~DTaG~e~~--~~~~--------~ 459 (593)
...++|+++|.||+||||+.++|....... ..++.+...........+......+||+.|.+.+ +..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999997653211 1112111100000011122234578999997433 3332 5
Q ss_pred hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCC
Q psy8073 460 NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVD 508 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~D 508 (593)
.++..+++.++|+|+++. ++.....|+..+.... .+++.+-..|+
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~---~~vv~l~~~~~ 160 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG---YKTFFVESICV 160 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT---CEEEEEEECCC
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC---CcEEEEEEECC
Confidence 567678899999999987 5666666877666542 45555554444
No 483
>1nub_A Basement membrane protein BM-40; extracellular module, glycoprotein, anti-adhesive protein, C binding, site-directed mutagenesis; HET: NAG; 2.80A {Homo sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A* 1bmo_A*
Probab=97.52 E-value=3.3e-05 Score=74.20 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=53.7
Q ss_pred HHHHHHhHhCC-CCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 5 QLEELFKTCDK-KGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 5 ~l~~~F~~~D~-d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
.+.-.|..+|. |+||+|+..||..++..+.....-+..+|..+|.|+||+||++||..+|..
T Consensus 156 ~v~w~F~~lD~~n~dg~l~~~El~~i~~~l~~~~~c~~~~~~~cD~n~D~~is~~Ew~~cf~~ 218 (229)
T 1nub_A 156 PVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 218 (229)
T ss_dssp HHHHHHHHHTTTTCSSEECTTTTGGGGSTTSTTGGGHHHHHHHHCTTCSSCEEHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHHHcCCCCCCcCCHHHHHHHhCC
Confidence 56778999999 899999999999998765444445679999999999999999999999853
No 484
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.42 E-value=0.011 Score=53.89 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8073 144 EGALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEAR--AKYEQEKAILMRKMEHETQ 221 (593)
Q Consensus 144 E~~i~~~~~~i~~~~~e~e~le~~l~r~~~~~~~~~~~l~eEmdqq~~~~~~~~~~ee~--~k~e~~~~el~~~~e~e~~ 221 (593)
++.|..--....+.+.+.+.++..|..- ...=++|+.||+.+|...+.+.+.-.. .++.......+.+++.-..
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EF----qesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEF----QEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333 333445667777776665555443221 1222223333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCcccccchhHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q psy8073 222 ELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEEL-------KITLEKTKNNLDLVHAEMAQLKSEYEGK--CQE 292 (593)
Q Consensus 222 elq~~~~~~~~~e~~~~~~~~~~~~~~~e~~~l~~en~~L-------~~~l~~~q~~l~~~~~el~~l~~~~~~~--~~e 292 (593)
+... .+..++.++..+......++..+-+|.+.|..| ...|.+....+..+-..+.-|..+++++ +++
T Consensus 85 e~~~---~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~ 161 (189)
T 2v71_A 85 QSYK---QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLV 161 (189)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 233344444444444444445555555555444 4555555666666666666666666554 455
Q ss_pred Hhhhhhc
Q psy8073 293 LNQLVGD 299 (593)
Q Consensus 293 ~n~~l~~ 299 (593)
..+.|.|
T Consensus 162 ~~QRLkd 168 (189)
T 2v71_A 162 SVQRLKD 168 (189)
T ss_dssp CC-----
T ss_pred HHHHHHH
Confidence 5666666
No 485
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.42 E-value=6.1e-05 Score=75.82 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=57.0
Q ss_pred hhhhHhhccCCCEEEEEEeCCChhcH-HHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHHHHHh
Q psy8073 455 RSMTKNYFRRADGVMLLYDVTNERSF-NSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQY 533 (593)
Q Consensus 455 ~~~~~~~~~~ad~vi~v~D~~~~~s~-~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l~~~~ 533 (593)
..+.+..+.++|.+|+|+|+.+|..- ..+..++ ......++|.+||+||+||.+.... .. ......++....
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L---~~~~~~~~~~vivlnK~DL~~~~~~---~~-~~~~~~~~y~~~ 149 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFL---VLVEANDIQPIICITKMDLIEDQDT---ED-TIQAYAEDYRNI 149 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHH---HHHHTTTCEEEEEEECGGGCCCHHH---HH-HHHHHHHHHHHH
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHH---HHHHHCCCCEEEEEECCccCchhhh---HH-HHHHHHHHHHhC
Confidence 34455578999999999999977643 3333332 2222346899999999999754100 00 011122233345
Q ss_pred CCeEEEEcCCCCCCHHHHH
Q psy8073 534 GAIFMETSSKSGDNILDAL 552 (593)
Q Consensus 534 ~~~~~e~Sa~~g~gi~~l~ 552 (593)
|..++.+||.+|.|+++++
T Consensus 150 g~~v~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 150 GYDVYLTSSKDQDSLADII 168 (307)
T ss_dssp TCCEEECCHHHHTTCTTTG
T ss_pred CCeEEEEecCCCCCHHHHH
Confidence 7788899999888876554
No 486
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=97.39 E-value=0.00039 Score=67.73 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=50.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHc-------CC--------CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy8073 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTG-------FD--------IQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66 (593)
Q Consensus 3 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-------l~--------l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~~~ 66 (593)
+++|+-+|++|| |++|+|+..+|..++.. +| .+..-++.+|..+| +||.|+.+||+.++..
T Consensus 167 eeKL~w~F~lyD-D~~G~I~~~El~~il~~i~~i~~~vge~~~~~~~~~e~~v~~~F~~~d--~dg~It~~EFl~~~~~ 242 (261)
T 1eg3_A 167 EDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFAN--NKPEIEAALFLDWMRL 242 (261)
T ss_dssp HHHHHHHHHHHS-CTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTT--TCSCBCHHHHHHHHHT
T ss_pred HHHHHHHHheee-CCCCCCcHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHhCC--CCCcCCHHHHHHHHHh
Confidence 679999999999 99999999999998853 23 12334679999996 7899999999998753
No 487
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=97.33 E-value=8.2e-05 Score=84.46 Aligned_cols=65 Identities=12% Similarity=0.269 Sum_probs=43.9
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcC-C-----------CCHHHHHHHHHHhCCC----CCCcccHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGF-D-----------IQPTDSDAIFADLDHD----GDGKVSLEDFAYGFR 65 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-~-----------l~~~e~~~i~~~~D~d----~~G~i~~~eF~~~~~ 65 (593)
.+++++++|..||.+++|+|+.++|+.+|..+ | ++.+++++|+..+|.| ++|.|+|++|+..|.
T Consensus 217 ~r~el~~aF~~fD~d~~g~Is~~eL~~fL~~~Qge~~~~~~~~~~~t~ee~~~iI~~~d~d~~~~~dg~is~eeF~~~L~ 296 (799)
T 2zkm_X 217 PRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSGINAQRGQLSPEGMVWFLC 296 (799)
T ss_dssp CCHHHHTTCC--------CCCHHHHHHHHHHTCC---------------CHHHHHHHHCCC--------CCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCeEcHHHHHHHHHHhcCCcccccccccCCCHHHHHHHHHHhhcccccccCCccchhhhhhccc
Confidence 35789999999999999999999999999976 3 4566788999999999 899999999999886
Q ss_pred H
Q psy8073 66 E 66 (593)
Q Consensus 66 ~ 66 (593)
.
T Consensus 297 S 297 (799)
T 2zkm_X 297 G 297 (799)
T ss_dssp S
T ss_pred C
Confidence 4
No 488
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.29 E-value=0.00015 Score=73.83 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=76.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhcCccc--------c-CC------------CCccceeeEEEEEEEC-----------
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFL--------N-KL------------GSTLGVDFQMKTIRVD----------- 437 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~~~~~--------~-~~------------~~t~g~~~~~~~~~~~----------- 437 (593)
.++--|+|+|++||||||+++.|.+..-+ + .. ....|..+.......+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 45678999999999999999998753100 0 00 0011111111000000
Q ss_pred --CeeEEEEEEecCCchhh-----hhhhH-hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCC
Q psy8073 438 --ERNVALQLWDTAGQERF-----RSMTK-NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509 (593)
Q Consensus 438 --~~~~~~~l~DTaG~e~~-----~~~~~-~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl 509 (593)
...+.+.++||+|.... ..+.. ...-..|-.+++.|++... ++......+.... ...++|.||.|.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~ 280 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDA 280 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCC
Confidence 01134668999995321 11110 1112478999999986553 3333333333222 234788999996
Q ss_pred CCccccccccccCHHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q psy8073 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDA 551 (593)
Q Consensus 510 ~~~~~~~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi~~l 551 (593)
... ......+....+.++.+++ +|.+++++
T Consensus 281 ~a~----------~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 281 DAR----------GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CSC----------CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred ccc----------hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 432 1112345566788877777 67776543
No 489
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.28 E-value=0.031 Score=49.75 Aligned_cols=88 Identities=10% Similarity=0.132 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccccchhHhHHHHHHHHHHHHHHHHHHH----H
Q psy8073 202 RAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVH----A 277 (593)
Q Consensus 202 ~~k~e~~~~el~~~~e~e~~elq~~~~~~~~~e~~~~~~~~~~~~~~~e~~~l~~en~~L~~~l~~~q~~l~~~~----~ 277 (593)
+..++..+..|+-+|+.|.....+..+.+..++.++..+..+...++....++..+|++|...+...--.-+.+. =
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~ 143 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNY 143 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444788888899999999999999999999999999999998888888888888899988888877766666665 5
Q ss_pred HHHHHHHHHHHH
Q psy8073 278 EMAQLKSEYEGK 289 (593)
Q Consensus 278 el~~l~~~~~~~ 289 (593)
+|..+|..|+..
T Consensus 144 eLKalQ~~~eqE 155 (168)
T 3o0z_A 144 KLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777777665
No 490
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=97.19 E-value=0.00051 Score=78.24 Aligned_cols=138 Identities=9% Similarity=0.032 Sum_probs=92.5
Q ss_pred HHHHHHHhH--hCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCC-------CCCcccHHHHHHHHHHHhhhhhhh
Q psy8073 4 LQLEELFKT--CDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHD-------GDGKVSLEDFAYGFREFLNSDARR 74 (593)
Q Consensus 4 ~~l~~~F~~--~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~D~d-------~~G~i~~~eF~~~~~~~~~~~~~~ 74 (593)
..++++|.. +|+|++|.|+..++..+|+. +..++..+|..+|.+ ++|.|+|+||...+..+.. .+.
T Consensus 150 ~~L~kaf~~~~~D~n~dGkIs~kel~~~l~~---~~~~v~~l~~~~d~~~~~~d~~~~g~i~feEF~~f~~~l~~--R~E 224 (885)
T 3ohm_B 150 TFLRKAYTKLKLQVNQDGRIPVKNILKMFSA---DKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCL--RPD 224 (885)
T ss_dssp HHHHHHHHHHHHSCCTTSCEEHHHHHHTTGG---GHHHHHHHHHTTTCCCSTTCEECGGGCCHHHHHHHHHHHSC--CHH
T ss_pred HHHHHHHHHhcCccCCCCccCHHHHHHHHhc---CHHHHHHHHHHhCCCccccccCCCCcCCHHHHHHHHHhcCC--HHH
Confidence 457889987 89999999999999998875 456788999999987 7899999999999876531 111
Q ss_pred hcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhhhhhh-h--ccccCchHHHHHHHHHhcCCCC---CchhhhhHHHHH
Q psy8073 75 LKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVH-K--FLNTSGKKLADLYHELRTSSNC---PEIVTHFEGALS 148 (593)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~-~--~~~~~~eev~~l~~~l~~~~~~---p~ll~~~E~~i~ 148 (593)
. ...+...+. ...+.-+...|..+|...+..... . |-.-+.+++..|+... +.+. .....+|++|++
T Consensus 225 I--~eiF~~yds---d~~g~mT~~EL~~FL~~~Q~e~~~~e~~~~~~t~e~~~~iI~k~--e~~~~~~~~g~LsldgF~~ 297 (885)
T 3ohm_B 225 I--DKILLEIGA---KGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKY--EPNQQFLERDQMSMEGFSR 297 (885)
T ss_dssp H--HHHHHHTTC---CSTTCEEHHHHHHHHHHHSSCTTSCTTTSCCCCHHHHHHHHHHH--CCCHHHHHTTEECHHHHHH
T ss_pred H--HHHHHHHhc---CCCCccCHHHHHHHHHHhcCcccccccccccCCHHHHHHHHHHh--cCChhhhccCccchhhhhh
Confidence 1 112222211 112233455699999887532100 0 0001678899999888 4431 123458999999
Q ss_pred HHHHH
Q psy8073 149 SLLDD 153 (593)
Q Consensus 149 ~~~~~ 153 (593)
.+++.
T Consensus 298 yL~S~ 302 (885)
T 3ohm_B 298 YLGGE 302 (885)
T ss_dssp HHTST
T ss_pred hccCc
Confidence 99874
No 491
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=97.18 E-value=0.00039 Score=76.88 Aligned_cols=64 Identities=6% Similarity=0.144 Sum_probs=56.5
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcC-C---CCHHHHHHHHHHhCCC----CCCcccHHHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGF-D---IQPTDSDAIFADLDHD----GDGKVSLEDFAYGFRE 66 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-~---l~~~e~~~i~~~~D~d----~~G~i~~~eF~~~~~~ 66 (593)
.+++++++|..||.+ +|+|+.+||..+|... | ++.++++.|+..+|.| ++|.|+|++|+..|..
T Consensus 78 ~~~el~~aF~~fD~~-~G~Is~~EL~~fL~~~qge~~ls~ee~~~ii~~~d~d~~~~~dG~Is~deF~~~L~s 149 (624)
T 1djx_A 78 QRAEIDRAFEEAAGS-AETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTKDGFLMYLLS 149 (624)
T ss_dssp CCHHHHHHHHHHHTT-SSSEEHHHHHHHHHHTSCCSSCSHHHHHHHHHHHCCCHHHHHTTEECHHHHHHHHHS
T ss_pred cHHHHHHHHHHhcCC-CCeecHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCChhhccCCCCCHHHHHHHhcC
Confidence 356899999999986 9999999999999954 3 7788999999999998 7999999999988864
No 492
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.02 E-value=0.00062 Score=71.93 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSK 414 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~ 414 (593)
.+..-|+|+|++++|||+|+|.|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4567899999999999999999985
No 493
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.99 E-value=0.002 Score=66.01 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=53.8
Q ss_pred hhccCCCEEEEEEeCCChh-cHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCccccccccccCHHHHHHH---HHHhCC
Q psy8073 460 NYFRRADGVMLLYDVTNER-SFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKL---AQQYGA 535 (593)
Q Consensus 460 ~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~~~~~~v~~~~~~~l---~~~~~~ 535 (593)
..+.++|.+++|... .|. +...+..|+-.... .++|.|||+||+||.+... ......+ ....|.
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~--------~~~~~~~~~~y~~~G~ 193 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEG--------MDFVNEQMDIYRNIGY 193 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHH--------HHHHHHHHHHHHTTTC
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchh--------HHHHHHHHHHHHhCCC
Confidence 357899999988665 454 33434444433322 2478899999999975410 0112222 235577
Q ss_pred eEEEEcCCCCCCHHHHHHH
Q psy8073 536 IFMETSSKSGDNILDALIA 554 (593)
Q Consensus 536 ~~~e~Sa~~g~gi~~l~~~ 554 (593)
+++.+||++|.|+.++...
T Consensus 194 ~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 194 RVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp CEEECBTTTTBTHHHHHHH
T ss_pred cEEEEecCCCcCHHHHHHh
Confidence 8899999999999988754
No 494
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.91 E-value=0.00091 Score=71.18 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=22.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHhc
Q psy8073 390 DRAFKIVFAGDAAVGKSCFIYRFSK 414 (593)
Q Consensus 390 ~~~~kI~ivG~~nvGKSSLln~l~~ 414 (593)
..+-.|+|+|++|||||||++.|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 4567899999999999999999875
No 495
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.79 E-value=0.0031 Score=66.61 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=61.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHh-------cCcccc---CC-C-----------CccceeeEEEE-------E------E
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFS-------KEVFLN---KL-G-----------STLGVDFQMKT-------I------R 435 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~-------~~~~~~---~~-~-----------~t~g~~~~~~~-------~------~ 435 (593)
....|+|+|.+||||||+...|. +..+.- .+ . ...|.++.... + .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34678889999999999999986 322110 00 0 01112221110 0 0
Q ss_pred ECCeeEEEEEEecCCchhh-hhhhH-----hhccCCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCc-EEEEEeCCC
Q psy8073 436 VDERNVALQLWDTAGQERF-RSMTK-----NYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-IVICANKVD 508 (593)
Q Consensus 436 ~~~~~~~~~l~DTaG~e~~-~~~~~-----~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iivV~NK~D 508 (593)
+....+.+.|+||||.-.+ ..... ..+..+|.+++|+|++..... ......+.. .+| .-+|.||+|
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D 251 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVD 251 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCC
Confidence 0002356899999995332 11111 224478999999999755332 222222221 134 347999999
Q ss_pred CCC
Q psy8073 509 LRA 511 (593)
Q Consensus 509 l~~ 511 (593)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 753
No 496
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.72 E-value=0.0045 Score=62.13 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhc
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSK 414 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~ 414 (593)
.+-.|+|+|++|||||||++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999874
No 497
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=96.71 E-value=0.0011 Score=75.04 Aligned_cols=122 Identities=9% Similarity=0.044 Sum_probs=0.0
Q ss_pred HhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCCCC
Q psy8073 12 TCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADL-------DHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAGAM 84 (593)
Q Consensus 12 ~~D~d~~G~I~~~el~~~l~~l~l~~~e~~~i~~~~-------D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~ 84 (593)
.||+|++|.|+..++..+|+..+....++..++..+ |.+++|.|+|+||...+..+ ...++....+.....
T Consensus 163 ~fd~n~dG~Is~kEl~~~l~~~~~~~~el~~~~~~~~~~~~k~D~~~~g~L~FeEF~~f~~~L--~~R~EI~eiF~~y~~ 240 (816)
T 3qr0_A 163 TTVEMEKNKIPVKAIQKCLSKDKDDRARISKALEKIGWPSGKNDAIDLKAFDFDTFFKFYLAL--LERSEIEGIFKELSK 240 (816)
T ss_dssp HHTSCCSSEEEHHHHHHHHCSCHHHHHHHHHHHHHHTSCCSTTCEEETTTCCHHHHHHHHHHH--CCCTHHHHHHHHHTT
T ss_pred hccCCCCCCCCHHHHHHHHHhcCChHHHHHHHHHHhcccccccccCCCCcCCHHHHHHHHHhc--CCHHHHHHHHHHHcc
Q ss_pred CCCCCCCCCchhhhHHHHHHHhhh-hh---------hhhhccccCchHHHHHHHHHhcCCCC-------CchhhhhHHHH
Q psy8073 85 SSEGPERRNSDVQNAWSLLLAGIG-EA---------NVHKFLNTSGKKLADLYHELRTSSNC-------PEIVTHFEGAL 147 (593)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~lg-~~---------~~~~~~~~~~eev~~l~~~l~~~~~~-------p~ll~~~E~~i 147 (593)
.. .+..+. .|..+|...+ +. . +.+++..|+... +. .....+|++|.
T Consensus 241 dg-----~~~mT~-eL~~FL~~~Q~E~~~~~~~~~~~-------t~e~~~~iI~ky----e~~~~~~~~~~g~LsldgF~ 303 (816)
T 3qr0_A 241 NK-----GNITTV-MFRDFLNDMQRHPSLHKTLFPLY-------TDAQCEALINDY----ESAVNKKGKKKGQLTKEGLL 303 (816)
T ss_dssp TS-----SSEEHH-HHHHHHHHTSSCTTSCTTTSCCC-------CHHHHHHHHHHH----HHHHHGGGCBTTEECHHHHH
T ss_pred CC-----CCcccH-HHHHHHHHhCCcccccccccccc-------CHHHHHHHHHHh----ccccchhhhccCCccHHHHH
Q ss_pred HHHHH
Q psy8073 148 SSLLD 152 (593)
Q Consensus 148 ~~~~~ 152 (593)
+.+++
T Consensus 304 ~yL~S 308 (816)
T 3qr0_A 304 YFLMC 308 (816)
T ss_dssp HHHHS
T ss_pred HHhhc
No 498
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.70 E-value=0.0024 Score=63.96 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=71.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHhcCcc--cc--------C-CCC-----------ccceeeEEEE----EE--E-CCeeE
Q psy8073 391 RAFKIVFAGDAAVGKSCFIYRFSKEVF--LN--------K-LGS-----------TLGVDFQMKT----IR--V-DERNV 441 (593)
Q Consensus 391 ~~~kI~ivG~~nvGKSSLln~l~~~~~--~~--------~-~~~-----------t~g~~~~~~~----~~--~-~~~~~ 441 (593)
.+-.|+|+|++||||||++..|..... .+ . ..+ ..|.++.... +. + .....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 356899999999999999998863210 00 0 000 0111111000 00 0 00235
Q ss_pred EEEEEecCCchhhh-hh---hHhhcc--CCCEEEEEEeCCChhcHHHHHHHHHHHHHHcCCCCcEEEEEeCCCCCCcccc
Q psy8073 442 ALQLWDTAGQERFR-SM---TKNYFR--RADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQA 515 (593)
Q Consensus 442 ~~~l~DTaG~e~~~-~~---~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piivV~NK~Dl~~~~~~ 515 (593)
.+.|+||||..... .. ....+. ..+.+++|+|++.. ...+..|...+. ..+ ..-+|.||.|....
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~--- 254 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS--- 254 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC---
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc---
Confidence 68999999954321 11 112232 46788999998743 334444433332 111 23467799997532
Q ss_pred ccccccCHHHHHHHHHHhCCeEEEEcCCCCCCH
Q psy8073 516 KGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548 (593)
Q Consensus 516 ~~~~~v~~~~~~~l~~~~~~~~~e~Sa~~g~gi 548 (593)
......+....+.++..++ .|.++
T Consensus 255 -------~g~~~~~~~~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 255 -------LGSVFNILAESKIGVGFMT--NGQNV 278 (296)
T ss_dssp -------CHHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred -------hhHHHHHHHHHCcCEEEEE--CCCCC
Confidence 1123345556677655554 34444
No 499
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=96.51 E-value=0.0013 Score=76.17 Aligned_cols=62 Identities=10% Similarity=0.189 Sum_probs=42.9
Q ss_pred CHHHHHHHHhHhCCCCCCcccHHHHHHHHHcC---CCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy8073 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGF---DIQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64 (593)
Q Consensus 2 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---~l~~~e~~~i~~~~D~d~~G~i~~~eF~~~~ 64 (593)
++.++..+|..+|.|++|.|+.++|..++... +.+.+.+..+|..+ .|++|+|+.+||..++
T Consensus 759 ~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~~l~~aF~~~-~d~~G~Is~~El~~~l 823 (863)
T 1sjj_A 759 GEAEFARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKIL-AGDKNYITVDELRREL 823 (863)
T ss_dssp CTHHHHHHHHHHCTTSCSEEETTHHHHTHHHHSTTCSSSHHHHHHHHGG-GTSSSEEEHHHHHHHS
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH-hCCCCcCcHHHHHHHC
Confidence 45667777777777777777777777776532 23345666777777 6777777777777665
No 500
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=96.50 E-value=0.0049 Score=50.89 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=50.1
Q ss_pred CCCCHH---HHHHHHHHhCCCCCCcccHHHHHHHHHHHhhhhhhhhcccccCCCCCCCCCCCCCchhhhHHHHHHHhhhh
Q psy8073 33 FDIQPT---DSDAIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGE 109 (593)
Q Consensus 33 l~l~~~---e~~~i~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~ 109 (593)
..++.+ ++..+|..+|.|++|+|+.+||..++..+ |.
T Consensus 28 ~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~l----------------------------------------g~ 67 (100)
T 2lv7_A 28 VDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSL----------------------------------------GY 67 (100)
T ss_dssp CCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH----------------------------------------TC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh----------------------------------------CC
Confidence 345555 45588999999999999999999887643 22
Q ss_pred hhhhhccccCchHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q psy8073 110 ANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSS 149 (593)
Q Consensus 110 ~~~~~~~~~~~eev~~l~~~l~~~~~~p~ll~~~E~~i~~ 149 (593)
. .+.+++..++..+ +.+ ..+..+|++|+..
T Consensus 68 ~-------~~~~ei~~l~~~~--D~d-~dG~I~~~EF~~~ 97 (100)
T 2lv7_A 68 M-------PNEVELEVIIQRL--DMD-GDGQVDFEEFVTL 97 (100)
T ss_dssp C-------CCTTTHHHHHHHH--CSS-CSSSBCHHHHHHH
T ss_pred C-------CCHHHHHHHHHHH--CCC-CCCeEeHHHHHHH
Confidence 2 2677899999998 554 3456789999864
Done!