RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8073
(593 letters)
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 242 bits (620), Expect = 3e-77
Identities = 96/195 (49%), Positives = 133/195 (68%), Gaps = 2/195 (1%)
Query: 366 SNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL 425
S+ S+ L+ ++ + +A+KIV AGDAAVGKS F+ R K F + +TL
Sbjct: 4 SHHHHHHSSGLVPRGSA--KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 61
Query: 426 GVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN 485
GVDFQMKT+ VD LQLWDTAGQERFRS+ K+YFR+ADGV+LLYDVT E+SF +++
Sbjct: 62 GVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE 121
Query: 486 WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSG 545
WV+ +E+ ++PI++ NK D+R A +G KC+ GEKLA YGA+F ETS+K G
Sbjct: 122 WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181
Query: 546 DNILDALIALSRHVY 560
NI++A++ L+R V
Sbjct: 182 SNIVEAVLHLAREVK 196
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 209 bits (535), Expect = 5e-65
Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 6/179 (3%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
S G P R FK+VF G+ +VGK+ I RF + F N +T+G+DF KT+ +++R V
Sbjct: 4 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV 501
LQLWDTAGQERFRS+ +Y R + +++YD+TN SF+ W++ V + + I+
Sbjct: 64 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM 123
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ NK DL Q + E GE+ A++ +F+ETS+K+G N+ ++ +
Sbjct: 124 LVGNKTDLSDKRQ------VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 209 bits (535), Expect = 7e-65
Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 6/185 (3%)
Query: 380 SNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER 439
S+ L P G R K+ GD VGKS + RF ++ F + + T+G F KT+
Sbjct: 11 SSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE 70
Query: 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP 499
+WDTAGQERF S+ Y+R + +++YD+T + SF ++K WV+ ++E +I
Sbjct: 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV 130
Query: 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ I NK DL + + + ++ A+ GAI +ETS+K+ NI + +SR +
Sbjct: 131 MAIAGNKCDLSDIRE------VPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
Query: 560 YVFIP 564
P
Sbjct: 185 PPLDP 189
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 209 bits (534), Expect = 7e-65
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 6/179 (3%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
S+ G K+V GD GKS + RF K+ F+ ST+G F +T+ V++ V
Sbjct: 2 SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV 501
++WDTAGQER+ S+ Y+R A ++++DVTN+ SF K WV+ ++ ++ +
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMA 121
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ NK DL + + E + AQ+ G FMETS+K+ N+ + ++R +
Sbjct: 122 LAGNKSDLLDARK------VTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 208 bits (532), Expect = 1e-64
Identities = 58/174 (33%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G +FK+V G+ VGK+ + R+ + F +K +TLG F K + + + V L +W
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQERF ++ Y+R ++G +L+YD+T+E SF VKNWV+ + ++ N I + I NK
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+DL + + + + E A+ GA TS+K I + + L + +
Sbjct: 121 IDLEKE------RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 209 bits (534), Expect = 2e-64
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G P R FK+VF G+ +VGK+ I RF + F N +T+G+DF KT+ +++R V LQLW
Sbjct: 11 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAG ERFRS+ +Y R + +++YD+TN SF W++ V + + I++ NK
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 130
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
DL Q + E GE+ A++ +F+ETS+K+G N+ ++ +
Sbjct: 131 TDLADKRQ------VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 178
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 209 bits (533), Expect = 2e-64
Identities = 65/197 (32%), Positives = 113/197 (57%), Gaps = 7/197 (3%)
Query: 365 HSNKSDSQSTPLLSLSNSLEPTGEP-DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGS 423
H + S L + D FK++ GD+ VGKSC + RF+ + + S
Sbjct: 5 HHHHHHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS 64
Query: 424 TLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSV 483
T+GVDF+++TI +D + + LQ+WDTAGQERFR++T +Y+R A G++++YDVT++ SFN+V
Sbjct: 65 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 124
Query: 484 KNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543
K W++ ++ ++ ++ NK DL K +D ++ A G F+ETS+K
Sbjct: 125 KQWLQEIDRYASENVNKLLVGNKCDLTTK------KVVDYTTAKEFADSLGIPFLETSAK 178
Query: 544 SGDNILDALIALSRHVY 560
+ N+ + + ++ +
Sbjct: 179 NATNVEQSFMTMAAEIK 195
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 208 bits (532), Expect = 2e-64
Identities = 58/188 (30%), Positives = 106/188 (56%), Gaps = 6/188 (3%)
Query: 373 STPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMK 432
S+ +S D FK++ G+++VGK+ F++R++ + F ST+G+DF++K
Sbjct: 3 SSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK 62
Query: 433 TIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE 492
T+ ++ + LQ+WDTAGQER+R++T Y+R A G +L+YD+ N+ SF +V++W ++
Sbjct: 63 TVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT 122
Query: 493 VTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552
+ ++ +++ NK DL + + + E G +LA G F E S+K N+
Sbjct: 123 YSWDNAQVILVGNKCDLEDE------RVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
Query: 553 IALSRHVY 560
L +
Sbjct: 177 ERLVDVIC 184
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 207 bits (529), Expect = 7e-64
Identities = 68/191 (35%), Positives = 112/191 (58%), Gaps = 9/191 (4%)
Query: 373 STPLLSLSNSLEPTG---EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDF 429
S S+ L P G + D FKIV G+A VGK+C + RF++ +F G+T+GVDF
Sbjct: 4 SHHHHHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDF 63
Query: 430 QMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEA 489
+KT+ ++ V LQ+WDTAGQERFRS+T++Y+R A+ ++L YD+T E SF + W+
Sbjct: 64 MIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE 123
Query: 490 VEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNIL 549
+E+ N + V+ NK+DL + + ++ E+ ++ ++ETS+K DN+
Sbjct: 124 IEQYASNKVITVLVGNKIDLAER------REVSQQRAEEFSEAQDMYYLETSAKESDNVE 177
Query: 550 DALIALSRHVY 560
+ L+ +
Sbjct: 178 KLFLDLACRLI 188
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 206 bits (526), Expect = 7e-64
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 6/174 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G R K+ GD VGKS ++RF ++ F + T+G F KT++ +W
Sbjct: 1 GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAG ERFR++ Y+R + +++YD+T E +F+++KNWV + + SI + I NK
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
DL + + + A AIF+ETS+K+ NI + I +SR +
Sbjct: 121 CDLTDVRE------VMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 206 bits (526), Expect = 9e-64
Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
+ A K+V G+ AVGKS I R+ K +F T+GVDF + I+V++ +V L LWDTA
Sbjct: 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQE F ++TK Y+R A +L++ T+ SF ++ +W E V + IP + NK+DL
Sbjct: 63 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDL 121
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
D CI E E LA++ F TS K N+ + L+
Sbjct: 122 LDD------SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 205 bits (525), Expect = 1e-63
Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
G FK+V G++AVGKS + RF K F ST+G F +T+ +D+ V ++W
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQER+ S+ Y+R A +++YD+TNE SF KNWV+ ++ +I I + NK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
DL +D + + A +FMETS+K+ N+ + +A+++ +
Sbjct: 121 ADLANKRA------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 205 bits (525), Expect = 2e-63
Identities = 64/183 (34%), Positives = 111/183 (60%), Gaps = 6/183 (3%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S +L G D FK++ G+++VGK+ F++R++ + F ST+G+DF++KT+
Sbjct: 9 SGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH 68
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS 497
E+ V LQ+WDTAGQER+R++T Y+R A G +L+YD+TNE SFN+V++W ++ + ++
Sbjct: 69 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN 128
Query: 498 IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
+++ NK D+ + + + E G+ LA+Q G F E S+K ++ A L
Sbjct: 129 AQVILVGNKCDMEEE------RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182
Query: 558 HVY 560
+
Sbjct: 183 AIC 185
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 205 bits (524), Expect = 2e-63
Identities = 73/171 (42%), Positives = 116/171 (67%), Gaps = 6/171 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK++ GD+ VGK+C ++RFS++ F + ST+G+DF+++TI +D + + LQ+WDTA
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T Y+R A G+ML+YD+TNE+SF++++NW+ +EE + +I NK D+
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + +E GEKLA YG FMETS+K+ N+ +A L+R +
Sbjct: 126 NDK------RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 205 bits (523), Expect = 3e-63
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 10/178 (5%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER-NVALQL 445
G R KIV GD A GK+ F++E F + T+G+DF ++ I + NV LQ+
Sbjct: 1 GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS---IPIVI 502
WD GQ M Y A GV+L+YD+TN +SF ++++W V++V+E S + +
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120
Query: 503 CANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
NK+DL I E + Q+ G S+K+GD++ ++ +
Sbjct: 121 VGNKIDLEHMRT------IKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 204 bits (522), Expect = 4e-63
Identities = 73/172 (42%), Positives = 112/172 (65%), Gaps = 7/172 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVF-LNKLGSTLGVDFQMKTIRVDERNVALQLWDT 448
D AFK++ GD+ VGK+C + RF F ST+G+DF+ K + VD V LQ+WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVD 508
AGQERFRS+T Y+R A ++LLYDVTN+ SF++++ W+ + E ++ + +++ NKVD
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + + RE GEKLA++YG FMETS+K+G N+ A A+++ +
Sbjct: 128 SAHE------RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 205 bits (524), Expect = 4e-63
Identities = 60/190 (31%), Positives = 104/190 (54%), Gaps = 6/190 (3%)
Query: 371 SQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQ 430
S S + D FK + G A GKSC +++F + F T+GV+F
Sbjct: 4 SHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFG 63
Query: 431 MKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV 490
+ + V + V LQ+WDTAGQERFRS+T++Y+R A G +L+YD+T+ ++NS+ W+
Sbjct: 64 SRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA 123
Query: 491 EEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILD 550
+ +I +++C NK DL + + + + AQ+ +F+ETS+ +G+N+ +
Sbjct: 124 RTLASPNIVVILCGNKKDLDPE------REVTFLEASRFAQENELMFLETSALTGENVEE 177
Query: 551 ALIALSRHVY 560
A + +R +
Sbjct: 178 AFLKCARTIL 187
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 205 bits (523), Expect = 4e-63
Identities = 62/168 (36%), Positives = 105/168 (62%), Gaps = 6/168 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK + G+A GKSC +++F ++ F + T+GV+F K I V + V LQ+WDTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
RFRS+T++Y+R A G +L+YD+T+ ++N++ NW+ + +I I++C NK DL AD
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + + AQ+ +F+ETS+ +G+N+ +A + +R +
Sbjct: 131 ------REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 204 bits (522), Expect = 4e-63
Identities = 58/171 (33%), Positives = 106/171 (61%), Gaps = 6/171 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
FK + GD VGKSC +++F+++ F+ T+GV+F + I V + + LQ+WDTA
Sbjct: 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T++Y+R A G +++YD+T ++N + +W+ +T + I++ NK DL
Sbjct: 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
A + + E ++ A++ G +F+E S+K+G+N+ DA + ++ +Y
Sbjct: 133 EAQ------RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 205 bits (524), Expect = 5e-63
Identities = 59/171 (34%), Positives = 104/171 (60%), Gaps = 6/171 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FKI+ G+++VGK+ F++R++ + F ST+G+DF++KTI +++ + LQ+WDTA
Sbjct: 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 65
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
G ER+R++T Y+R A G +L+YD+TNE SFN+V++W ++ + ++ +++ NK D+
Sbjct: 66 GLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 125
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + + E G +LA G F E S+K N+ L +
Sbjct: 126 EDE------RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 170
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 205 bits (523), Expect = 6e-63
Identities = 63/171 (36%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK++ G++ VGKSC + RFS + + N ST+GVDF++KT+ +D + V LQ+WDTA
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T +Y+R + G++++YDVT++ SFN VK W++ ++ +++ ++ NK DL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + ++ +V ++ A F+ETS+ N+ DA + ++R +
Sbjct: 126 KDK------RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 204 bits (522), Expect = 6e-63
Identities = 60/200 (30%), Positives = 109/200 (54%), Gaps = 9/200 (4%)
Query: 361 LRRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK 420
+R H + P ++ + E D FK+V GD+ VGKS + RF++ F +
Sbjct: 1 MRGSHHHHHHGIPLPGRAMGTRDD---EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE 57
Query: 421 LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSF 480
ST+GV+F ++I+VD + + Q+WDTAG ER+R++T Y+R A G +L+YD+ ++
Sbjct: 58 SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTY 117
Query: 481 NSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMET 540
+V+ W++ + + +++I I++ NK DLR + + + A++ G F+ET
Sbjct: 118 ENVERWLKELRDHADSNIVIMLVGNKSDLRHL------RAVPTDEARAFAEKNGLSFIET 171
Query: 541 SSKSGDNILDALIALSRHVY 560
S+ N+ A + +Y
Sbjct: 172 SALDSTNVEAAFQTILTEIY 191
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 203 bits (520), Expect = 7e-63
Identities = 63/171 (36%), Positives = 109/171 (63%), Gaps = 7/171 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D KI+ GD+ VGKSC + RF ++ F +T+G+DF++KT+ ++ + V LQ+WDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T Y+R A G++L+YD+T+ER+F ++K W + V E + +++ NK D+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + + GE LA++ G F+E+S+K+ DN+ + L++ +
Sbjct: 121 ET-------RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 204 bits (521), Expect = 1e-62
Identities = 62/171 (36%), Positives = 108/171 (63%), Gaps = 6/171 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK++ GD+ VGKSC + RF+ + + ST+GVDF+++TI +D + + LQ+WDTA
Sbjct: 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 73
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T +Y+R A G++++YDVT++ SFN+VK W++ ++ ++ ++ NK DL
Sbjct: 74 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
K +D ++ A G F+ETS+K+ N+ + + ++ +
Sbjct: 134 TTK------KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 203 bits (519), Expect = 1e-62
Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 7/171 (4%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK++ GD+ VGKS + RF+ F +T+GVDF+++T+ ++ V LQ+WDTA
Sbjct: 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQERFR++T Y+R GV+++YDVT+ SF +VK W+ + + ++ + ++ NK D
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRILVGNKNDD 125
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
K ++ E K A Q G ETS+K N+ + ++ V
Sbjct: 126 PER------KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 204 bits (521), Expect = 1e-62
Identities = 71/196 (36%), Positives = 113/196 (57%), Gaps = 7/196 (3%)
Query: 366 SNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL 425
S+ + L S +P + D FK+V GDA+VGK+C + RF F + GST+
Sbjct: 3 SSHHHHHHSSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI 62
Query: 426 GVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN 485
GVDF MKT+ + + V LQ+WDTAGQERFR++T++Y+R A+G +L YD+T SF SV +
Sbjct: 63 GVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH 122
Query: 486 WVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKS 544
W+E V + ++I ++ NK DL + + + LA+ Y + +ETS+K
Sbjct: 123 WIEDVRKYAGSNIVQLLIGNKSDLSEL------REVSLAEAQSLAEHYDILCAIETSAKD 176
Query: 545 GDNILDALIALSRHVY 560
N+ +A + ++ +
Sbjct: 177 SSNVEEAFLRVATELI 192
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 203 bits (518), Expect = 2e-62
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 380 SNSLEPTGEP---DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV 436
S+ L P G P D +++ G VGK+ + RF+ + F ST+GVDF++KT+ +
Sbjct: 11 SSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL 70
Query: 437 DERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN 496
+ + LQ+WDTAGQERF S+T Y+R A G++L+YD+T + +F+ + W++ +++
Sbjct: 71 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE 130
Query: 497 SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIAL 555
+++ NK+D D + I R+ GEK AQQ + F E S+K N+ + + L
Sbjct: 131 DAELLLVGNKLDCETD------REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184
Query: 556 SRHVY 560
+
Sbjct: 185 VDDIL 189
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 203 bits (518), Expect = 5e-62
Identities = 57/179 (31%), Positives = 101/179 (56%), Gaps = 6/179 (3%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
S + + D FKIV GD+ VGKS + RF+K F ST+GV+F +T+ ++ + +
Sbjct: 3 SEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI 62
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIV 501
Q+WDTAGQER+R++T Y+R A G +++YD++ S+ + +W+ + E ++++ +
Sbjct: 63 KAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVG 122
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ NK DL + + E + AQ+ +F ETS+ + +N+ A L +Y
Sbjct: 123 LIGNKSDLAHL------RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 202 bits (515), Expect = 7e-62
Identities = 54/183 (29%), Positives = 102/183 (55%), Gaps = 8/183 (4%)
Query: 380 SNSLEPTGEP--DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S+ L P G + FK+V G++ VGK+ + RF++ F + +T+GV+F +T+ +
Sbjct: 11 SSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG 70
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS 497
V Q+WDTAG ER+R++T Y+R A G +L++D+T +++ V+ W++ + + E +
Sbjct: 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT 130
Query: 498 IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
I +++ NK DL + + E A+ G +F+ETS+ N+ A + +
Sbjct: 131 IVVMLVGNKSDLSQA------REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 184
Query: 558 HVY 560
++
Sbjct: 185 EIF 187
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 201 bits (513), Expect = 1e-61
Identities = 66/184 (35%), Positives = 106/184 (57%), Gaps = 11/184 (5%)
Query: 382 SLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV 441
SL P G R FKI+ GD+ VGK+C YRF F ++ +T+GVDF+ + + +D +
Sbjct: 10 SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69
Query: 442 ALQLWDTAGQERFR-SMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE-VTENSIP 499
+QLWDTAGQERFR SM ++Y+R V+ +YD+TN SF+S+ W+E ++ + N IP
Sbjct: 70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129
Query: 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKS---GDNILDALIALS 556
++ NK DLR+ + ++ +K A + ETS+K+ D++ + L+
Sbjct: 130 RILVGNKCDLRSA------IQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183
Query: 557 RHVY 560
+
Sbjct: 184 HKLK 187
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 202 bits (515), Expect = 1e-61
Identities = 64/194 (32%), Positives = 107/194 (55%), Gaps = 17/194 (8%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S +G+ D K++ GD+ VGK+ F+YR++ F K +T+G+DF+ K + +
Sbjct: 11 SSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYN 70
Query: 438 ERN----------VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWV 487
+ V LQLWDTAGQERFRS+T +FR A G +L++D+T+++SF +V+NW+
Sbjct: 71 AQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM 130
Query: 488 EAVEE-VTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD 546
++ + IV+ NK DL + ++ +LA +YG + ETS+ +G
Sbjct: 131 SQLQANAYCENPDIVLIGNKADLPDQ------REVNERQARELADKYGIPYFETSAATGQ 184
Query: 547 NILDALIALSRHVY 560
N+ A+ L +
Sbjct: 185 NVEKAVETLLDLIM 198
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 201 bits (513), Expect = 1e-61
Identities = 63/168 (37%), Positives = 107/168 (63%), Gaps = 6/168 (3%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK + GD VGKSC + +F+ + F T+GV+F + + +D + + LQ+WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRAD 512
FRS+T++Y+R A G +L+YD+T +FN + +W+E + + +++ I++ NK DL +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 513 AQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + RE GE A+++G IFMETS+K+ N+ +A I ++ +Y
Sbjct: 142 ------RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 200 bits (512), Expect = 2e-61
Identities = 66/174 (37%), Positives = 101/174 (58%), Gaps = 12/174 (6%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
KI+ G++ VGKS + RF+ + F +L +T+GVDF++KTI VD L +WDTA
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE-VTENSIPIVICANKVD 508
GQERFR++T +Y+R A GV+L+YDVT +F + NW+ +E T N I ++ NK+D
Sbjct: 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132
Query: 509 L--RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
R +DR G K A+++ +F+E S+K+ D + A L +
Sbjct: 133 KENRE---------VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 177
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 201 bits (513), Expect = 3e-61
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 386 TGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQL 445
GEP FK+V GD GK+ F+ R F K +TLGV+ + + +
Sbjct: 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 68
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICAN 505
WDTAGQE+F + Y+ +A ++++DVT+ ++ +V NW + V EN IPIV+C N
Sbjct: 69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGN 127
Query: 506 KVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
KVD++ + ++ + + S+KS N + L+R +
Sbjct: 128 KVDIKDRKV--------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 201 bits (512), Expect = 3e-61
Identities = 68/187 (36%), Positives = 115/187 (61%), Gaps = 7/187 (3%)
Query: 374 TPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKT 433
+ L ++S S D KI+ GD+ VGKSC + RF ++ F +T+G+DF++KT
Sbjct: 2 SGLRTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT 61
Query: 434 IRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEV 493
+ ++ + V LQLWDTAGQERFR++T Y+R A G++L+YDVT+ER+F ++K W + V E
Sbjct: 62 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 121
Query: 494 TENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALI 553
+ +++ NK D+ + + + GE LA++ G F+E+S+K+ DN+ +
Sbjct: 122 ANDEAQLLLVGNKSDMET-------RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 174
Query: 554 ALSRHVY 560
L++ +
Sbjct: 175 TLAKLIQ 181
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 199 bits (508), Expect = 7e-61
Identities = 56/171 (32%), Positives = 100/171 (58%), Gaps = 6/171 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
D FK+V GD+ VGKS + RF++ F + ST+GV+F ++I+VD + + Q+WDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDL 509
GQER+R +T Y+R A G +L+YD+ ++ +V+ W++ + + +++I I++ NK DL
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
R + + + A++ F+ETS+ N+ +A + +Y
Sbjct: 123 RHL------RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 199 bits (508), Expect = 1e-60
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV-DFQMKTIRVDERNVALQLW 446
+ +KI GD VGK+ +I R F +T+G + + + + +W
Sbjct: 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANK 506
DTAGQE+ + Y+ A G +L +DVT+ + ++ WV+ + V N PIV+CANK
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+D++ + I +++ ++ + + E S+K+ N + L+R
Sbjct: 127 IDIKNR------QKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 198 bits (505), Expect = 2e-60
Identities = 64/182 (35%), Positives = 102/182 (56%), Gaps = 17/182 (9%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERN--------- 440
D K + GD+ VGK+ +Y+++ F +K +T+G+DF+ K +
Sbjct: 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 441 -VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SI 498
+ LQLWDTAG ERFRS+T +FR A G +LL+D+TNE+SF +V+NW+ ++ + +
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 499 PIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRH 558
IV+C NK DL + + E +LA++YG + ETS+ +G NI A+ L
Sbjct: 129 DIVLCGNKSDLEDQ------RAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182
Query: 559 VY 560
+
Sbjct: 183 IM 184
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 193 bits (494), Expect = 5e-59
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD-ERNVALQLW 446
K++ GD+ VGK+ ++R+ + + + +T+G DF K + VD ++ +Q+W
Sbjct: 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVW 63
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE----VTENSIPIVI 502
DTAGQERF+S+ ++R AD +L+YDVTN SF ++K+W + + + P VI
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123
Query: 503 CANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSRHVY 560
NK+D + + + ++LA+ G I TS+K+ N+ A ++R
Sbjct: 124 LGNKIDAEESKKI-----VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 193 bits (493), Expect = 2e-58
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 10/179 (5%)
Query: 386 TGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQL 445
T K++ GD+ VGK+ + ++ + F N+ +T+G DF K + VD+R V +Q+
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE----VTENSIPIV 501
WDTAGQERF+S+ ++R AD +L++DVT +F ++ +W + + P V
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 502 ICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ NK+DL + + + ETS+K N+ A ++R+
Sbjct: 122 VLGNKIDLENRQV------ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 192 bits (490), Expect = 4e-58
Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 378 SLSNSLEPT-GEPDRAFKIVFAGDAAVGKSCFIYRFSKEV--FLNKLGSTLGVDFQMKTI 434
+ ++P K+ G+A VGKS I F+ + FL T GV+ + +
Sbjct: 5 MVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPV 64
Query: 435 RVDERNVALQLW--DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE 492
+ + V+++L+ DTAG + ++ Y+ +L++DV++ SF S K W E ++
Sbjct: 65 TIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKS 124
Query: 493 VTEN---SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK-SGDNI 548
+ + V+ ANK DL + ++ + A F + S+ G +
Sbjct: 125 ARPDRERPLRAVLVANKTDLPPQRHQ-----VRLDMAQDWATTNTLDFFDVSANPPGKDA 179
Query: 549 LDALIALSRHVY 560
++++ Y
Sbjct: 180 DAPFLSIATTFY 191
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 191 bits (487), Expect = 6e-58
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK++ GD VGKS + R+ F +L T+GV+F K + VD V +Q+WDTAGQE
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEE----VTENSIPIVICANKVD 508
RFRS+ ++R +D +L + V + +SF ++ NW + S P VI NK+D
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 509 LRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSRHVY 560
+ + + E + + G + ETS+K N+ A R V
Sbjct: 128 ISE-------RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 183 bits (467), Expect = 3e-55
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+ K+V G+AAVGKS + RF F T+G F + + ++E V ++WDTAG
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510
QERF S+ Y+R A +++YDVT +SF ++WV+ + E I I + NK+D
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ + V RE GEKLA++ G +F ETS+K+G+N+ D + + +
Sbjct: 122 QEGGERKV---AREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 180 bits (460), Expect = 6e-54
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 8/181 (4%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
+S + K++ G VGKS +F + F+ T ++ K + +D
Sbjct: 4 GISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD 62
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN- 496
V + + DTAGQE + ++ NYFR +G + ++ +T SF + ++ E + V E+
Sbjct: 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 122
Query: 497 SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALS 556
++P ++ NK DL Q + E + A+Q+ ++ETS+K+ N+ L
Sbjct: 123 NVPFLLVGNKSDLEDKRQ------VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176
Query: 557 R 557
R
Sbjct: 177 R 177
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 178 bits (455), Expect = 2e-53
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 8/173 (4%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
P K+V G VGKS +F + F++ T+ D K VD L + D
Sbjct: 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILD 63
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANK 506
TAGQE F +M + Y R G +L++ + + +SFN V + V + P+V+ NK
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
DL + Q + R + + E S+K N+ +A L R V
Sbjct: 124 ADLESQRQ------VPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 178 bits (455), Expect = 4e-53
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 13/194 (6%)
Query: 365 HSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGST 424
H + S L R K+V G VGK+ ++F + F T
Sbjct: 2 HHHHHHSSGRENLYFQGM-----PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPT 56
Query: 425 LGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVK 484
+ + K + + + L L DTAGQ+ + + ++ G +L+Y VT+ SF ++
Sbjct: 57 VENTYS-KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIE 115
Query: 485 NWVEAVEEVTEN-SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543
+ + + E +P+V+ NK DL + + + G+KLA+ +GA FME+S++
Sbjct: 116 SLYQKLHEGHGKTRVPVVLVGNKADLSPERE------VQAVEGKKLAESWGATFMESSAR 169
Query: 544 SGDNILDALIALSR 557
+ +
Sbjct: 170 ENQLTQGIFTKVIQ 183
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 178 bits (454), Expect = 7e-53
Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 8/182 (4%)
Query: 380 SNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER 439
+ + K++ G VGKS +F + F+ T ++ K + +D
Sbjct: 2 AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGE 60
Query: 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SI 498
V + + DTAGQE + ++ NYFR +G + ++ +T SF + ++ E + V E+ ++
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 120
Query: 499 PIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRH 558
P ++ NK DL Q + E + A+Q+ ++ETS+K+ N+ L R
Sbjct: 121 PFLLVGNKSDLEDKRQ------VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174
Query: 559 VY 560
+
Sbjct: 175 IR 176
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 177 bits (452), Expect = 7e-53
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 389 PDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDT 448
++ KI G +VGKS +F + F++ T+ F K I V+ + LQL DT
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDT 61
Query: 449 AGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKV 507
AGQ+ + + Y +G +L+Y VT+ +SF +K + ++ IPI++ NK
Sbjct: 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
DL + I E G+ LA+ + A F+E+S+K +D +
Sbjct: 122 DLHMERV------ISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIIL 165
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 178 bits (453), Expect = 8e-53
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 8/185 (4%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S +L G+ D FK++ G++ VGKS F + D + I VD
Sbjct: 9 SGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVD 68
Query: 438 ERNVALQLWDTAGQERFRS-MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN 496
+ V L ++D Q + + + D ++++ VT+ RSF+ V + + +
Sbjct: 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH 128
Query: 497 -SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIAL 555
+P+++ NK DL + + E G LA +ETS+ N +
Sbjct: 129 HDLPVILVGNKSDLARSRE------VSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182
Query: 556 SRHVY 560
R +
Sbjct: 183 VRQIR 187
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 176 bits (449), Expect = 1e-52
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+++ G VGKS + RF K F T+ ++ + I D+ LQ+ DT G
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS--IPIVICANKVD 508
+F +M + + +L+Y +T+ +S +K E + E+ + IPI++ NK D
Sbjct: 61 SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120
Query: 509 LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ + E LA+ + FMETS+K N+ + L
Sbjct: 121 ESPSRE------VQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 175 bits (447), Expect = 2e-52
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
K++ G VGKS +F + F+ T ++ K + +D V + + DTAG
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAG 61
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDL 509
QE + ++ NYFR +G + ++ +T SF + ++ E + V E+ ++P ++ NK DL
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
Q + E + A Q+ ++ETS+K+ N+ L R +
Sbjct: 122 EDKRQ------VSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 176 bits (449), Expect = 3e-52
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNV------ 441
E ++K V G+++VGKS + R +K+ F +T+G F + +++ N+
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 442 -------------------------------ALQLWDTAGQERFRSMTKNYFRRADGVML 470
+WDTAGQER+ S+ Y+R A ++
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 471 LYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLA 530
++D++N + + K WV ++ ++ I++ ANK+D +D +K A
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNK-------FQVDILEVQKYA 173
Query: 531 QQYGAIFMETSSKSGDNILDALIALSRHVY 560
Q +F++TS+K+G NI + L+ +Y
Sbjct: 174 QDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 175 bits (445), Expect = 4e-52
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 8/167 (4%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
FK++ G++ VGKS F + D + I VD+ V L ++D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 453 RFRS-MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLR 510
+ + + D ++++ VT+ RSF+ V + + + +P+++ NK DL
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
+ + E G LA +ETS+ N + R
Sbjct: 123 RSRE------VSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 174 bits (445), Expect = 5e-52
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R +K+V G VGKS +F F+ K T+ DF K I VD L++ DTAG
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDL 509
E+F SM Y + G +L+Y + N++SF +K + + V +P+++ NKVDL
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 510 RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
++ + + G LA+++G FMETS+KS + + + R
Sbjct: 121 ESERE------VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 175 bits (446), Expect = 6e-52
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 10/185 (5%)
Query: 375 PLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI 434
PL S++ S E +K+V GD VGKS +F +++F++ T+ D +K
Sbjct: 2 PLGSMATS-AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHT 59
Query: 435 RVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVT 494
+D + L + DTAGQE F +M + Y R DG +++Y VT++ SF V + + + V
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 495 EN-SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD-NILDAL 552
+ S P+++ ANKVDL + + R+ G+++A +Y ++ETS+K N+
Sbjct: 120 DRESFPMILVANKVDLMHLRK------VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
Query: 553 IALSR 557
L R
Sbjct: 174 HDLVR 178
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 175 bits (445), Expect = 1e-51
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 14/176 (7%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
E +++V G VGKS + RF K F + T+ ++ + I D+ LQ+ D
Sbjct: 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITD 62
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS--IPIVICAN 505
T G +F +M + + +L++ VT+++S + + + ++ + IP+++ N
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122
Query: 506 KVDL--RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
K D R +D + +AQ++ FMETS+K N+ + L
Sbjct: 123 KCDETQRE---------VDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE 169
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 173 bits (440), Expect = 2e-51
Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 13/170 (7%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+K+V G VGKS + + F+++ T+ ++ K + +D L + DTAG
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDL 509
QE + +M Y R +G + ++ + N +SF + + E ++ V ++ +P+V+ NK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Query: 510 --RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
R ++ + LA+ YG ++ETS+K+ + DA L R
Sbjct: 121 AART---------VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 171 bits (435), Expect = 2e-50
Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 13/170 (7%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+K+V G VGKS + + F+++ T+ ++ K + +D L + DTAG
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAG 61
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDL 509
QE + +M Y R +G + ++ + N +SF + ++ E ++ V ++ +P+V+ NK DL
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121
Query: 510 --RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
R +D + + LA+ YG F+ETS+K+ + DA L R
Sbjct: 122 PSRT---------VDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 170 bits (434), Expect = 3e-50
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 13/173 (7%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
+ +K+V G VGKS + + F+++ T+ ++ K + +D L + D
Sbjct: 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILD 75
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANK 506
TAGQE + +M Y R +G + ++ + N +SF + + E ++ V ++ +P+V+ NK
Sbjct: 76 TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNK 135
Query: 507 VDL--RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
DL R +D + +LA+ YG F+ETS+K+ + DA L R
Sbjct: 136 CDLPTRT---------VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVR 179
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 169 bits (430), Expect = 1e-49
Identities = 30/179 (16%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLG--STLGVDFQMKTIRVD---ERNVALQLWD 447
K++ G+ GK+ + + K + +T+G+D + I++ +R++ L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERS-FNSVKNWVEAVEEVTENSIPIVICANK 506
AG+E F S ++ + + +YD++ ++ +++K W+ ++ +S P+++
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSS-PVILVGTH 121
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYG-----AIFMETSSKSGDNILDALIALSRHVY 560
+D+ + Q K ++ ++L + G +++ D + +
Sbjct: 122 LDVSDEKQ---RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 168 bits (428), Expect = 1e-49
Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 9/169 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
R +K+V G VGKS +F + +F+ K T+ ++ K + VD + L++ DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAG 60
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDL 509
E+F +M Y + G L+Y +T + +FN +++ E + V + +P+++ NK DL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 510 RADAQAKGVKCIDREVGEKLAQQY-GAIFMETSSKSGDNILDALIALSR 557
+ + +E G+ LA+Q+ F+E+S+KS N+ + L R
Sbjct: 121 EDERV------VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 167 bits (426), Expect = 2e-49
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 9/166 (5%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
+K++ G VGKS F V G + ++I VD +L ++D Q+
Sbjct: 3 YKVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRA 511
R + + D +++Y VT++ SF + + +PI++ NK DL
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
+ + + G A + F+ETS+ N+ + R
Sbjct: 121 SRE------VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 163 bits (416), Expect = 1e-47
Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 361 LRRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNK 420
+ H + S N + K+ G A VGKS + RF + F+ +
Sbjct: 1 MHHHHHHSSGVDLGT----ENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE 56
Query: 421 LGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSF 480
TL ++ +D+ V++++ DTAGQE + + R +G +L+YD+T+ SF
Sbjct: 57 YDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSF 114
Query: 481 NSVKNWVEAVEEVTEN-SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFME 539
V ++E+ + ++ +++ NK DL Q + E GEKLA + F E
Sbjct: 115 EEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ------VSTEEGEKLATELACAFYE 168
Query: 540 TSSKSGD-NILDALIALSR 557
S+ +G+ NI + L R
Sbjct: 169 CSACTGEGNITEIFYELCR 187
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 161 bits (410), Expect = 6e-47
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 10/173 (5%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+++V GD VGK+ F+ + + LG D +T+ VD + L + DT
Sbjct: 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 451 QERFRS--MTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKV 507
E+ ++ + +++Y + + SF S + + +PI++ NK
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
DL + + E G A + F+ETS+ N+ + + R +
Sbjct: 122 DLARCRE------VSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 160 bits (406), Expect = 6e-46
Identities = 40/214 (18%), Positives = 83/214 (38%), Gaps = 19/214 (8%)
Query: 353 YNKRDYPELRRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRF 412
++ + + QS ++S+ + + +++V G+ VGKS F
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMS----TDSVISSESGNTYYRVVLIGEQGVGKSTLANIF 57
Query: 413 SK--EVFLNKLGSTLGVDFQMKTIRVDERNVA---LQLWDTAGQERFRSMTKNYFRRADG 467
+ + + LG D +T+ VD + L +W+ G+ + + + + D
Sbjct: 58 AGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA 114
Query: 468 VMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICANKVDLRADAQAKGVKCIDREVG 526
+++Y +T+ SF + + IPI++ NK DL + + G
Sbjct: 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE------VSVSEG 168
Query: 527 EKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
A + F+ETS+ N+ + + R V
Sbjct: 169 RACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 202
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 158 bits (401), Expect = 2e-45
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 12/176 (6%)
Query: 388 EPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
+ + G GKS +F + F+++ L + VD + V L++ D
Sbjct: 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMD 75
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEV---TENSIPIVICA 504
TA + R+ + Y A +++Y V + +SF+S +++E + T+ SIP ++
Sbjct: 76 TADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLG 134
Query: 505 NKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK-SGDNILDALIALSRHV 559
NK+D+ Q + + G LA ++G +F E S+ +++ R
Sbjct: 135 NKLDMAQYRQ------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 151 bits (383), Expect = 7e-43
Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 393 FKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQE 452
K+ G+ + GKS ++R+ ++ + S G F+ K I VD ++ L + D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78
Query: 453 RFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICANKVDLRA 511
+ + D V+ ++ + +E SF +V N+ + S +P+V+ + + A
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 512 DAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDALIALSRHV 559
+ ID KL+ + ET + G N+ +++ V
Sbjct: 134 ANP----RVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 148 bits (375), Expect = 8e-42
Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 13/175 (7%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVF-LNKLGSTLGVDFQMKTIRVDERNVA---LQLW 446
+++V G+ VGKS F+ ++ LG D +T+ VD + L +W
Sbjct: 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-SIPIVICAN 505
+ G+ + + + + D +++Y +T+ SF + + IPI++ N
Sbjct: 65 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 122
Query: 506 KVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
K DL + + G A + F+ETS+ N+ + + R V
Sbjct: 123 KSDLVRXRE------VSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVR 171
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 143 bits (363), Expect = 5e-40
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
++ +A KIV GD AVGK+C + FSK T+ +F ++
Sbjct: 9 DMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYK 67
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTEN 496
L LWDTAGQE + + + +D V+L + V N SF+++ W E+
Sbjct: 68 NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKW---EPEIKHY 124
Query: 497 S--IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
V+ KVDLR D + ++ G+ L Q+ G + ++E SS + +
Sbjct: 125 IDTAKTVLVGLKVDLRKDGS----DDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 139 bits (353), Expect = 2e-38
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 10/194 (5%)
Query: 363 RQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLG 422
HS+ D + L S + E R+ K+V GD GK+ + F+ F
Sbjct: 5 HHHSSGVDLGTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYT 64
Query: 423 STLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNS 482
T+ + M ++V + V L +WDTAGQ+ + + ++ A ++L +DVT+ SF++
Sbjct: 65 PTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDN 123
Query: 483 VKN-WVEAVEEVTENSIPIVICANKVDLRADA------QAKGVKCIDREVGEKLAQQYGA 535
+ N W V + +PI++ K DLR D + G++ + G+++A+ GA
Sbjct: 124 IFNRWYPEVNHFCKK-VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA 182
Query: 536 I-FMETSSKSGDNI 548
+ ++E S++ DN+
Sbjct: 183 VAYLECSARLHDNV 196
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 146 bits (370), Expect = 5e-38
Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 18/192 (9%)
Query: 377 LSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTI-- 434
+ + S + K+ GD GK+ + + E F K T G++ K
Sbjct: 26 IEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPN 85
Query: 435 ------RVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVE 488
+ + WD GQE + + + R+ MLL D + ++ W+
Sbjct: 86 IKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLR 142
Query: 489 AVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
+E+ S P+++ NK+D I+++ + F S K+GD +
Sbjct: 143 HIEKYGGKS-PVIVVMNKIDENPSYN------IEQKKINERFPAIENRFHRISCKNGDGV 195
Query: 549 LDALIALSRHVY 560
+L V
Sbjct: 196 ESIAKSLKSAVL 207
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 137 bits (347), Expect = 6e-38
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 12/171 (7%)
Query: 386 TGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQL 445
+ R K V GD AVGK+C + ++ F T+ +F + V+ V L L
Sbjct: 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGL 60
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTENS--IPIVI 502
WDTAGQE + + +R AD +L + + ++ S+ +V W + E+ + +PIV+
Sbjct: 61 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW---IPELKHYAPGVPIVL 117
Query: 503 CANKVDLRADAQ----AKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
K+DLR D Q G I GE+L + GA ++E SSKS +N+
Sbjct: 118 VGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENV 168
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 137 bits (346), Expect = 1e-37
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 366 SNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL 425
S+ S+ L+ + +E +A K V GD AVGK+C + ++ F + T+
Sbjct: 4 SHHHHHHSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 63
Query: 426 GVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN 485
D + VD + V L LWDTAGQE + + + + D ++ + + + SF +V+
Sbjct: 64 -FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRA 122
Query: 486 WVEAVEEVTENS--IPIVICANKVDLRADA------QAKGVKCIDREVGEKLAQQYGAI- 536
EV + PI++ K+DLR D + K + I G +A++ GA+
Sbjct: 123 K--WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180
Query: 537 FMETSSKSGDNI 548
++E S+ + +
Sbjct: 181 YLECSALTQRGL 192
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 135 bits (341), Expect = 3e-37
Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 19/173 (10%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
++ GDA GKS I+RF + L T ++ K + VD + + + + AG
Sbjct: 6 PELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAG 63
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVE-----AVEEVTENSIPIVICAN 505
+ + AD V+ ++ + +E SF +V E ++ +V +
Sbjct: 64 APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 506 KVDLRADAQAKGVKCIDREVGEKL-AQQYGAIFMETSSKSGDNILDALIALSR 557
++ + + L A + ET + G N+ +++
Sbjct: 119 RISASSPRV------VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 132 bits (335), Expect = 5e-36
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 372 QSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQM 431
+ + L + K+V GD A GK+C + FSK+ F T+ ++ +
Sbjct: 6 HHSSGVDLGTE-NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-V 63
Query: 432 KTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAV 490
I VD + V L LWDTAGQE + + + D +++ + V + S ++ W V
Sbjct: 64 ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKW---V 120
Query: 491 EEVTENS--IPIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGAI-FMETS 541
EV +PI++ ANK DLR+D + + + G +A + A ++E S
Sbjct: 121 PEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180
Query: 542 SKSGDNI 548
+K+ + +
Sbjct: 181 AKTKEGV 187
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 131 bits (332), Expect = 1e-35
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 16/181 (8%)
Query: 380 SNSLEPTGEPDRAF--KIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S+ L P G A K+V GD A GK+C + FSK+ F T+ + + I VD
Sbjct: 11 SSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVD 69
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTEN 496
+ V L LWDTAGQE + + + D +++ + + + S ++ W EV
Sbjct: 70 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF 126
Query: 497 S--IPIVICANKVDLRADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDN 547
+PI++ NK DLR D + + E G +A + A ++E S+K+ +
Sbjct: 127 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
Query: 548 I 548
+
Sbjct: 187 V 187
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 131 bits (332), Expect = 2e-35
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTA 449
+ K V GD AVGK+C + ++ F T+ D + VD + V L LWDTA
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTA 65
Query: 450 GQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTENSIPIVICANKVD 508
GQE + + +R AD +L + + ++ S+ +V W+ + N +PIV+ K+D
Sbjct: 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-VPIVLVGTKLD 124
Query: 509 LRADAQ--AKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILDA 551
LR D A I GE+L +Q GA ++E SSK+ N+
Sbjct: 125 LRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAV 170
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 130 bits (329), Expect = 4e-35
Identities = 43/195 (22%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 366 SNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL 425
S+ S+ L+ + ++P + KIV GD+ GK+ ++ F+K+ F T+
Sbjct: 4 SHHHHHHSSGLVPRGSHMDP--NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 61
Query: 426 GVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN 485
++ + +D + + L LWDT+G + ++ + +D V++ +D++ + +SV
Sbjct: 62 FENYTA-SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 120
Query: 486 -WVEAVEEVTENSIPIVICANKVDLRADA------QAKGVKCIDREVGEKLAQQYGAI-F 537
W ++E N +++ K DLR D + + G +A+Q GA +
Sbjct: 121 KWKGEIQEFCPN-TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179
Query: 538 METSSKSGDNILDAL 552
+E S+ +N + +
Sbjct: 180 IECSALQSENSVRDI 194
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 129 bits (325), Expect = 1e-34
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 10/177 (5%)
Query: 380 SNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER 439
G R K V GD AVGK+ + ++ + + T D + VD R
Sbjct: 8 GGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGR 66
Query: 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTENSI 498
V LQL DTAGQ+ F + + D +L + V + SF +V WV +
Sbjct: 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-A 125
Query: 499 PIVICANKVDLRADAQ------AKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
PI++ + DLR D + K + E + LA++ A ++E S+ + N+
Sbjct: 126 PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNL 182
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 127 bits (321), Expect = 2e-34
Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 387 GEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLW 446
+ KIV GD+ GK+ ++ F+K+ F T+ ++ + +D + + L LW
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLW 60
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTEN--SIPIVIC 503
DT+G + ++ + +D V++ +D++ + +SV W E+ E + +++
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW---KGEIQEFCPNTKMLLV 117
Query: 504 ANKVDLRADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNILD 550
K DLR D + + G +A+Q GA ++E S+ +N +
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR 171
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 127 bits (320), Expect = 4e-34
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 391 RAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
+A K V GD AVGK+C + ++ F + T+ D + VD + V L LWDTAG
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 62
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTENS--IPIVICANKV 507
QE + + + + D ++ + + + SF +V+ W EV + PI++ K+
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW---YPEVRHHCPNTPIILVGTKL 119
Query: 508 DLRADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
DLR D + K + I G +A++ GA+ ++E S+ + +
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 126 bits (318), Expect = 1e-33
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 378 SLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
S G K V GD AVGK+C + ++ + F + T+ D ++ V
Sbjct: 4 GAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVG 62
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTEN 496
+ L L+DTAGQE + + + D ++ + V N SF +VK W V E+ E
Sbjct: 63 GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW---VPELKEY 119
Query: 497 S--IPIVICANKVDLRADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDN 547
+ +P ++ ++DLR D K I E G+KLA++ GA ++E S+ +
Sbjct: 120 APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG 179
Query: 548 I 548
+
Sbjct: 180 L 180
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 125 bits (315), Expect = 4e-33
Identities = 40/197 (20%), Positives = 84/197 (42%), Gaps = 14/197 (7%)
Query: 364 QHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGS 423
H + S + +L K+V GD GK+ + +K+ +
Sbjct: 3 HHHHHSSGRE----NLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVP 58
Query: 424 TLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSV 483
T+ ++ + +E+ V L LWDT+G + ++ + +D V+L +D++ + +S
Sbjct: 59 TVFENYTA-CLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSA 117
Query: 484 -KNWVEAVEEVTENSIPIVICANKVDLRADA------QAKGVKCIDREVGEKLAQQYGAI 536
K W + + + +++ K DLR D + I E G +A+Q GA
Sbjct: 118 LKKWRTEILDYCPS-TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176
Query: 537 -FMETSSKSGDNILDAL 552
++E S+ + + + ++
Sbjct: 177 IYLEGSAFTSEKSIHSI 193
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 114 bits (286), Expect = 2e-29
Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 23/187 (12%)
Query: 390 DRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGS----------TLGVDFQMKTIR-VDE 438
+ FKIV+ G GK+ + +V + G TL DF I V
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71
Query: 439 RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN-- 496
L+ GQ + + K R DG++ + D R + ++ E + E
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL 131
Query: 497 ---SIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALI 553
+PIVI NK DL A V+ V + + +E + G + + L
Sbjct: 132 TLDDVPIVIQVNKRDL---PDALPVE----MVRAVVDPEGKFPVLEAVATEGKGVFETLK 184
Query: 554 ALSRHVY 560
+SR V
Sbjct: 185 EVSRLVL 191
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 100 bits (251), Expect = 2e-23
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 380 SNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER 439
+ K V GD AVGK+C + ++ F + T+ D + VD +
Sbjct: 143 KTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGK 201
Query: 440 NVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKN-WVEAVEEVTENS- 497
V L LWDTAG E + + + + D ++ + + + SF+ V+ W EV +
Sbjct: 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW---YPEVRHHCP 258
Query: 498 -IPIVICANKVDLRADA------QAKGVKCIDREVGEKLAQQYGAI-FMETSSKSGDNI 548
PI++ K+DLR D + K + I G +A++ GA+ ++E S+ + +
Sbjct: 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 317
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 83.9 bits (207), Expect = 2e-18
Identities = 40/224 (17%), Positives = 66/224 (29%), Gaps = 72/224 (32%)
Query: 399 GDAAVGKSCFIYRFSKEV---FLNKLGSTLG-VDFQMKTIRVDE--------------RN 440
G +GKSC RF + F S L DF + + D
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94
Query: 441 VALQLW-------DTAGQERFRSMTKNYFRRA---------------------------- 465
+ + D Q + + Y +RA
Sbjct: 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154
Query: 466 ---------DGVMLLYDVTNE--RSFNSVKNWVEAVEEVT-ENSIPIVICANKVDLRADA 513
DG +L DV+ R+F+ +V + + PIV+ K D +
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214
Query: 514 QAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
I L+++ +ETS++S N+ A L +
Sbjct: 215 Y------IRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQ 251
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 79.6 bits (197), Expect = 2e-17
Identities = 30/176 (17%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 393 FKIVFAG-DAAVGKSCFIYRF-SKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAG 450
++ G D + GK+ I + + T+G F ++ + +++ ++D +G
Sbjct: 22 VHVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSG 76
Query: 451 QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV---EEVTENSIPIVICANKV 507
Q R+R++ ++Y++ ++ + D ++ K ++ + ++ IPI+ ANK+
Sbjct: 77 QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136
Query: 508 DLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALSRHV 559
DLR A +V + L + + + G+ + + + L +
Sbjct: 137 DLR---DAVTSV----KVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 74.1 bits (183), Expect = 2e-15
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 22/179 (12%)
Query: 389 PDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
++ G + GK+ F+ + F + T+G F M+ I NV ++LWD
Sbjct: 19 SKEEMELTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG--FNMRKITK--GNVTIKLWD 73
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICANK 506
GQ RFRSM + Y R ++ + D ++ + KN + + + + IP+++ NK
Sbjct: 74 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 133
Query: 507 VDLRADAQAKGVKCIDREVGEKLAQQYGAI------FMETSSKSGDNILDALIALSRHV 559
DL A K E+ EK+ AI S K DNI L L +H
Sbjct: 134 RDL---PGALDEK----ELIEKMNLS--AIQDREICCYSISCKEKDNIDITLQWLIQHS 183
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 73.4 bits (181), Expect = 3e-15
Identities = 36/185 (19%), Positives = 76/185 (41%), Gaps = 11/185 (5%)
Query: 377 LSLSNSLEPTGEPDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIR 435
S+ + ++ +I+ G D A GK+ +YR + T+G F ++T+
Sbjct: 3 NIFSSMFDKLWGSNKELRILILGLDGA-GKTTILYRLQIGEVVTTK-PTIG--FNVETLS 58
Query: 436 VDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE 495
+N+ L +WD GQ R + Y+ V+ + D T++ ++ + + + E
Sbjct: 59 Y--KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 116
Query: 496 NS-IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIA 554
+++ ANK D A + +E+ + + +S+ G+ I + L
Sbjct: 117 LQDAALLVFANKQDQ---PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDW 173
Query: 555 LSRHV 559
L +
Sbjct: 174 LIDVI 178
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 72.6 bits (179), Expect = 5e-15
Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 33/196 (16%)
Query: 376 LLSLSNSLEPTGEPDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGS------TLGVD 428
LLS+ L+ PD+ +I+ G D A GK+ + + T G
Sbjct: 2 LLSILRKLK--SAPDQEVRILLLGLDNA-GKTTLLKQL-------ASEDISHITPTQG-- 49
Query: 429 FQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVE 488
F +K+++ + L +WD GQ + R ++YF D ++ + D + + F +
Sbjct: 50 FNIKSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELT 107
Query: 489 AVEEVTENS-IPIVICANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSK 543
+ E + S +P++I ANK DL A E+ E L + S+
Sbjct: 108 ELLEEEKLSCVPVLIFANKQDL---LTAAPAS----EIAEGLNLHTIRDRVWQIQSCSAL 160
Query: 544 SGDNILDALIALSRHV 559
+G+ + D + + ++V
Sbjct: 161 TGEGVQDGMNWVCKNV 176
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 71.6 bits (176), Expect = 1e-14
Identities = 43/203 (21%), Positives = 88/203 (43%), Gaps = 26/203 (12%)
Query: 364 QHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLG 422
H + S P SL + + + +I+ G DAA GK+ +Y+ L ++
Sbjct: 6 HHHHHSSGLV-PRGSLFSRIFGKKQ----MRILMVGLDAA-GKTTILYKLK----LGEIV 55
Query: 423 STL-GVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFN 481
+T+ + F ++T+ +N+ +WD GQ++ R + ++YF+ G++ + D +
Sbjct: 56 TTIPTIGFNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQ 113
Query: 482 SVKNWVEAVEEVTENS-IPIVICANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAI 536
+ ++ + + E +++ ANK D+ A V E+ +KL +
Sbjct: 114 ESADELQKMLQEDELRDAVLLVFANKQDM---PNAMPVS----ELTDKLGLQHLRSRTWY 166
Query: 537 FMETSSKSGDNILDALIALSRHV 559
T + G + D L LS +
Sbjct: 167 VQATCATQGTGLYDGLDWLSHEL 189
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 71.1 bits (175), Expect = 1e-14
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 31/179 (17%)
Query: 393 FKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGS------TLGVDFQMKTIRVDERNVALQL 445
+I+ G D A GK+ +YR ++G T+G F ++T+ +N+ Q+
Sbjct: 8 MRILILGLDGA-GKTTILYRL-------QVGEVVTTIPTIG--FNVETVTY--KNLKFQV 55
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICA 504
WD G R + Y+ D V+ + D + K+ + A+ E E +V+ A
Sbjct: 56 WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA 115
Query: 505 NKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALSRHV 559
NK D+ QA E+ L + +TS+ G + +A+ L +
Sbjct: 116 NKQDM---EQAMTSS----EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 68.5 bits (168), Expect = 1e-14
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64
+L +F CD +G++ EEFR LCT ++P D++A+F LD D DG ++ ++FA GF
Sbjct: 28 RLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGF 87
Query: 65 REFL 68
L
Sbjct: 88 LGSL 91
Score = 29.2 bits (66), Expect = 0.92
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEF 26
+ E +F+ D G I +EF
Sbjct: 58 VRPADAEAVFQRLDADRDGAITFQEF 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 70.7 bits (174), Expect = 2e-14
Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 379 LSNSLEPTGEPDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVD 437
L L+ + +R +++ G D A GK+ + +F+ E + + TLG F +KT+
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNA-GKTTILKKFNGEDV-DTISPTLG--FNIKTLEH- 59
Query: 438 ERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS 497
R L +WD GQ+ RS +NYF DG++ + D + + + ++++ +
Sbjct: 60 -RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA 118
Query: 498 -IPIVICANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDAL 552
++I ANK DL A + E L + + S+ +G+++L +
Sbjct: 119 GATLLIFANKQDL---PGALSC----NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171
Query: 553 IALSRHV 559
L +
Sbjct: 172 DWLLDDI 178
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 73.1 bits (179), Expect = 2e-14
Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 27/194 (13%)
Query: 389 PDRAFKIVFAGDAAVGKSCFI----YRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQ 444
P + K++ G + GKS +S LG+T+ + +R N+ L
Sbjct: 1 PLGS-KLLLMGRSGSGKSSMRSIIFSNYSAFDTRR-LGATID--VEHSHLRFLG-NMTLN 55
Query: 445 LWDTAGQERFRSMT-----KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-- 497
LWD GQ+ F + F+ ++ ++DV + ++ + +A++++ + S
Sbjct: 56 LWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD 115
Query: 498 IPIVICANKVDL-----RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDAL 552
I + +K+DL R + +K + E I TS
Sbjct: 116 AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL--IGFPTSIWDESLYK--- 170
Query: 553 IALSRHVYVFIPCV 566
A S+ V IP +
Sbjct: 171 -AWSQIVCSLIPNM 183
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 70.4 bits (173), Expect = 3e-14
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 31/183 (16%)
Query: 389 PDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGS------TLGVDFQMKTIRVDERNV 441
DR +++ G D A GK+ +YR LG T+G ++T++ +N+
Sbjct: 19 ADRKIRVLMLGLDNA-GKTSILYRL-------HLGDVVTTVPTVG--VNLETLQY--KNI 66
Query: 442 ALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPI 500
+ ++WD GQ R + YF D V+ + D T+ K+ + A+ + E +
Sbjct: 67 SFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLL 126
Query: 501 VICANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALS 556
+I ANK DL A E+ E+L +++SSK+GD +++ + L
Sbjct: 127 LIFANKQDL---PDAASEA----EIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179
Query: 557 RHV 559
+
Sbjct: 180 ERL 182
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 69.2 bits (170), Expect = 1e-13
Identities = 39/197 (19%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 379 LSNSLEPTGEPDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGS---TLGVDFQMKTI 434
S+ L+ G + K+VF G D A GK+ ++ ++LG TL + +
Sbjct: 12 FSSVLQFLGLYKKTGKLVFLGLDNA-GKTTLLHMLK----DDRLGQHVPTLH--PTSEEL 64
Query: 435 RVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAV-EEV 493
+ + +D G + R + KNY +G++ L D + K ++++ +
Sbjct: 65 TI--AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 122
Query: 494 TENSIPIVICANKVDLRADA-------QAKGVKCIDREVGEKLAQQYGA----IFMETSS 542
T ++PI+I NK+D +A + G+ G ++ A +FM S
Sbjct: 123 TIANVPILILGNKIDRP-EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM-CSV 180
Query: 543 KSGDNILDALIALSRHV 559
+ +++++
Sbjct: 181 LKRQGYGEGFRWMAQYI 197
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 68.8 bits (169), Expect = 1e-13
Identities = 34/177 (19%), Positives = 72/177 (40%), Gaps = 19/177 (10%)
Query: 389 PDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWD 447
+ K++ G D A GK+ +Y+FS ++ T+G ++ I + N +WD
Sbjct: 13 NHQEHKVIIVGLDNA-GKTTILYQFSMNEVVHTS-PTIG--SNVEEIVI--NNTRFLMWD 66
Query: 448 TAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICANK 506
GQE RS Y+ + V+++ D T+ + + + + + ++I ANK
Sbjct: 67 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 126
Query: 507 VDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALSRHV 559
D+ + V E+ + L + + + +G+ + L + +
Sbjct: 127 QDV---KECMTVA----EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 67.6 bits (166), Expect = 2e-13
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 31/178 (17%)
Query: 394 KIVFAG-DAAVGKSCFIYRFSKEVFLNKLGS------TLGVDFQMKTIRVDERNVALQLW 446
+I+ G DAA GK+ +Y+ KLG T+G F ++T+ +N++ +W
Sbjct: 2 RILMVGLDAA-GKTTILYKL-------KLGEIVTTIPTIG--FNVETVEY--KNISFTVW 49
Query: 447 DTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICAN 505
D GQ++ R + ++YF+ G++ + D + N + + + E +++ AN
Sbjct: 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109
Query: 506 KVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALSRHV 559
K DL A E+ +KL + T + SGD + + L LS +
Sbjct: 110 KQDL---PNAMNAA----EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 67.6 bits (165), Expect = 3e-13
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65
+ LFK D G G + EEF+ C F +Q D A++ + G L + +
Sbjct: 107 IPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYY 166
Query: 66 EFLNSDA 72
L S A
Sbjct: 167 RLLTSPA 173
Score = 32.2 bits (73), Expect = 0.31
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 21/94 (22%)
Query: 1 MSDLQ---LEELFKT-CDKKGTGQIGPEEFRELCTGF-----------------DIQPTD 39
++D Q ++ F D G I +F ++ T + +
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 40 SDAIFADLDHDGDGKVSLEDFAYGFREFLNSDAR 73
+ D + D VS E++ + + + +
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKS 95
Score = 30.3 bits (68), Expect = 1.1
Identities = 3/33 (9%), Positives = 9/33 (27%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGF 33
+ + ++ G ++EL
Sbjct: 136 LQCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 67.4 bits (165), Expect = 3e-13
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65
L F+ D I +E+ + T + A F +D + DG +SLE+F
Sbjct: 96 LPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGS 155
Query: 66 EFLNSDA 72
+F +D
Sbjct: 156 DFFMNDG 162
Score = 38.5 bits (90), Expect = 0.002
Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 16/89 (17%)
Query: 2 SDLQ---LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADL----------- 47
SDL ++ F D G I +F + F + L
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNF 60
Query: 48 --DHDGDGKVSLEDFAYGFREFLNSDARR 74
G + F +E + + +
Sbjct: 61 LTAVAGGKGIDETTFINSMKEMVKNPEAK 89
Score = 34.7 bits (80), Expect = 0.040
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 7/61 (11%)
Query: 14 DKKGTGQIGPEEFRELCTGF-------DIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66
G I F + F +D + D +S +++ F
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGM 122
Query: 67 F 67
Sbjct: 123 L 123
Score = 30.8 bits (70), Expect = 0.66
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIF 44
+ F D G + EEF + F + DS
Sbjct: 125 LDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFMNDGDSTNKV 168
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 67.3 bits (165), Expect = 3e-13
Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 21/189 (11%)
Query: 377 LSLSNSLEPTGEPDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIR 435
S+ L P G + K++ G D A GK+ +Y+FS T+G ++ I
Sbjct: 8 HHHSSGLVPRGS--QEHKVIIVGLDNA-GKTTILYQFSMNEV-VHTSPTIG--SNVEEIV 61
Query: 436 VDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE 495
+ N +WD GQE RS Y+ + V+++ D T+ + + + + +
Sbjct: 62 I--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 119
Query: 496 NS-IPIVICANKVDLRADAQAKGVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILD 550
++I ANK D+ + V E+ + L + + + +G+ +
Sbjct: 120 LRKAGLLIFANKQDV---KECMTVA----EISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172
Query: 551 ALIALSRHV 559
L + +
Sbjct: 173 GLEWMMSRL 181
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 67.2 bits (165), Expect = 4e-13
Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 44/203 (21%)
Query: 379 LSNSLEPTGEPDRAFKIVFAG-DAAVGKSCFIYRFSKEVFLNKLGS------TLGVDFQM 431
+ L G ++ K++F G D A GK+ ++ K T
Sbjct: 10 FRDVLASLGLWNKHGKLLFLGLDNA-GKTTLLHML-------KNDRLATLQPTWH--PTS 59
Query: 432 KTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVE 491
+ + + N+ +D G + R + K+YF +G++ L D + F+ + ++A+
Sbjct: 60 EELAI--GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALF 117
Query: 492 EVTENS-IPIVICANKVDLR--------------ADAQAKGVKCIDREVGEKLAQQYGAI 536
+ E +P VI NK+D + R V +
Sbjct: 118 NIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPV---------EV 168
Query: 537 FMETSSKSGDNILDALIALSRHV 559
FM S + L+A LS+++
Sbjct: 169 FM-CSVVMRNGYLEAFQWLSQYI 190
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 66.9 bits (163), Expect = 6e-13
Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 17/175 (9%)
Query: 380 SNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLN---KLGSTLGVDFQMKTIRV 436
S+ E +I+ G GKS ++ N L ST I
Sbjct: 8 SSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISN 65
Query: 437 DERNVALQLWDTAGQERFRSMT---KNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEV 493
V Q+WD GQ F T + FR ++ + D + ++ V +
Sbjct: 66 SS-FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD-DYMEALTRLHITVSKA 123
Query: 494 TENS--IPIVICANKVDL-----RADAQAKGVKCIDREVGEKLAQQYGAIFMETS 541
+ + + + +KVD + + Q + + ++ + ++ F TS
Sbjct: 124 YKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTS 178
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 66.3 bits (162), Expect = 7e-13
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65
++ + CDK GQI +EF T + ++ F +D +G+G++SL++ R
Sbjct: 104 VKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163
Query: 66 EFLNSD 71
+F
Sbjct: 164 DFHFGR 169
Score = 37.0 bits (86), Expect = 0.007
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 17/73 (23%)
Query: 5 QLEELFKTCDKKGTGQIGPEEF----RELCTGFDIQPTDS-------------DAIFADL 47
+L++ F D G G + +F + + F + D + +
Sbjct: 8 RLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEA 67
Query: 48 DHDGDGKVSLEDF 60
DG ++ E F
Sbjct: 68 GVGSDGSLTEEQF 80
Score = 36.7 bits (85), Expect = 0.009
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----------AIFADLDHDGDGKVS 56
+ L K G + E+F + + ++ I D + DG+++
Sbjct: 61 DYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQIN 120
Query: 57 LEDFAYGFREF 67
++FA
Sbjct: 121 ADEFAAWLTAL 131
Score = 30.1 bits (68), Expect = 1.4
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA 42
MS + E F D G G++ +E F D +
Sbjct: 133 MSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHFGRLDVEL 174
Score = 28.6 bits (64), Expect = 4.3
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 43 IFADLDHDGDGKVSLEDFAYGFREFLNS 70
F D DG+G + DF + +
Sbjct: 12 RFDRWDFDGNGALERADFEKEAQHIAEA 39
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 66.0 bits (161), Expect = 9e-13
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65
+ +F D G I E+ + + I +D DA F L G V+ E FA +
Sbjct: 111 MNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWT 170
Query: 66 EFLNSD 71
E+ S+
Sbjct: 171 EYFVSN 176
Score = 36.0 bits (83), Expect = 0.018
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 21/91 (23%)
Query: 1 MSDLQ---LEELFKT-CDKKGTGQIGPEEFRELCTGF-----------------DIQPTD 39
+SD Q + +F T D G I ++F
Sbjct: 6 LSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLI 65
Query: 40 SDAIFADLDHDGDGKVSLEDFAYGFREFLNS 70
D + D + D +V+ E++ + E + S
Sbjct: 66 WDGLRKYADENEDEQVTKEEWLKMWAECVKS 96
Score = 29.4 bits (66), Expect = 2.1
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGF 33
+ + F T G + E F L T +
Sbjct: 140 IPKSDCDAAFDTLSDGGKTMVTREIFARLWTEY 172
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 64.4 bits (157), Expect = 2e-12
Identities = 17/67 (25%), Positives = 23/67 (34%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65
L D G G + + T F + + A LD DGDGKV + F
Sbjct: 100 LHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAFA 159
Query: 66 EFLNSDA 72
+ A
Sbjct: 160 RYFTVPA 166
Score = 36.3 bits (84), Expect = 0.012
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 17/94 (18%)
Query: 5 QLEELFKTCDKKGTGQIGPEEF----RELCTGFDIQPTDS-------------DAIFADL 47
++ F T D+ G G I +F + + F + +
Sbjct: 5 RIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIA 64
Query: 48 DHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNA 81
D DGD +++ E+F G + L R
Sbjct: 65 DRDGDQRITREEFVTGAVKRLRDKPDRFAEMARP 98
Score = 27.8 bits (62), Expect = 6.1
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGF 33
+ + + D G G++G E +
Sbjct: 129 VPEDLARQAAAALDTDGDGKVGETEIVPAFARY 161
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 62.5 bits (152), Expect = 2e-11
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ L + D G G + +E + + FD+ + F D D GK+ +
Sbjct: 125 LIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTEL 184
Query: 61 AYGFREFLNSDA 72
+ FR+F
Sbjct: 185 VHLFRKFWMEPY 196
Score = 41.0 bits (96), Expect = 5e-04
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 11/80 (13%)
Query: 6 LEELFKTCDKKGTGQIGPEEF----RELCTGFDIQPTDS-------DAIFADLDHDGDGK 54
L + F T D G++ +E + + F +
Sbjct: 38 LYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNG 97
Query: 55 VSLEDFAYGFREFLNSDARR 74
+ ED+ R F ++ R
Sbjct: 98 LLREDWVEANRVFAEAERER 117
Score = 37.1 bits (86), Expect = 0.009
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTD-------------SDAIFADLDHDGD 52
+ F + + E++ E F + S++ + LD DGD
Sbjct: 83 VRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGD 142
Query: 53 GKVSLEDFAYGFREF 67
G V +++ + F
Sbjct: 143 GTVDVDELKTMMKAF 157
Score = 34.8 bits (80), Expect = 0.041
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA 42
+ F+ D +G++ E L F ++P D
Sbjct: 159 VPQEAAYTFFEKADTDKSGKLERTELVHLFRKFWMEPYDPQW 200
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 60.9 bits (148), Expect = 9e-11
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 11/123 (8%)
Query: 394 KIVFAG-DAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV-DERNVALQLWDTAGQ 451
++F G + GK+ R + + +++ +V + R +L L D G
Sbjct: 9 AVLFVGLCDS-GKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 452 ERFR-SMTKNYFRRADGVMLLYDVTN-ERSFNSVKNWVEAV---EEVTENSIPIVICANK 506
E R + + A V+ + D +R V ++ V +NS ++I NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 507 VDL 509
D+
Sbjct: 125 QDI 127
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 60.2 bits (146), Expect = 1e-10
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFAY 62
+ LF DK G I +E++ I + D F D D G++ +++
Sbjct: 110 WGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
Query: 63 GFREFLNSD 71
F +
Sbjct: 170 QHLGFWYTM 178
Score = 34.0 bits (78), Expect = 0.075
Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 9/98 (9%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ-----PTDSD--AIFADLDHDGDGKVSL 57
+ + +F D G+I +E + I P + + G G
Sbjct: 17 RHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYG 76
Query: 58 EDFAYGFREFLNSDARRLKSNVNAGAMSSEGPERRNSD 95
+ + ++ + + A + R D
Sbjct: 77 VETD--WPAYIEGWKKLATDELEKYAKNEPTLIRIWGD 112
Score = 32.9 bits (75), Expect = 0.19
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGF 33
S EE F+ CD +GQ+ +E GF
Sbjct: 142 QSSEDCEETFRVCDIDESGQLDVDEMTRQHLGF 174
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 61.5 bits (149), Expect = 3e-10
Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 29/227 (12%)
Query: 344 NMSSLSEYDYNKRDYPELRRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAV 403
+ S + + D N S S + SNS G ++ +I+ G A
Sbjct: 274 DYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLSNKEMRILMLGLDAA 333
Query: 404 GKSCFIYRFSKEVFLNKLGS------TLGVDFQMKTIRVDERNVALQLWDTAGQERFRSM 457
GK+ +Y+ KLG T+G F ++T+ +NV +WD GQ++ R +
Sbjct: 334 GKTTILYKL-------KLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPL 382
Query: 458 TKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENS-IPIVICANKVDLRADAQAK 516
++Y+ G++ + D + + + + + E I+I ANK DL A
Sbjct: 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL---PDAM 439
Query: 517 GVKCIDREVGEKLA----QQYGAIFMETSSKSGDNILDALIALSRHV 559
E+ EKL + + + SGD + + L L+ +
Sbjct: 440 KPH----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 482
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 4e-10
Identities = 57/389 (14%), Positives = 121/389 (31%), Gaps = 94/389 (24%)
Query: 34 DIQPTDSDAIFADLD-HDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAGAMSSEGPERR 92
DI DA + D D ++D + L+ + + + +
Sbjct: 20 DILSVFEDAFVDNFDCKD------VQDM---PKSILSK--EEIDHIIMS-------KDAV 61
Query: 93 NSDVQNAWSLLLAGIGEANVHKFLNTSGKKLAD-LYHELRTSSNCPEIVTHFEGALSSLL 151
+ ++ W+LL E V KF+ + L ++T P ++T +
Sbjct: 62 SGTLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT------RMYI 113
Query: 152 DDVKRLHEDNEKLEEMF-NREREVH-LER-LKGLEEELDVQV------AKVVTQAKEEAR 202
+ RL+ DN+ + +R + L + L L +V + K A +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCL 172
Query: 203 AKYEQEKA------ILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSD--HNF 254
+ Q K + ++ L+ L ++ + + D +S+
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-----DPNWTSRSDHSSNIKLRI 227
Query: 255 SFENEELKITLEKTKNN-----LDLV-HAEMAQLKSEYEGKCQEL----NQLVGDYL--- 301
EL+ L+ L V +A+ + C+ L + V D+L
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFLSAA 284
Query: 302 --------ELDQG-----SDKQFA------IQRLMEDIDSGR--------STMRDCMDCS 334
Q L ++ + ++RD +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 335 SDYKSNNEENMSSLSEYDYNKRDYPELRR 363
++K N + ++++ E N + E R+
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Score = 58.7 bits (141), Expect = 4e-09
Identities = 63/431 (14%), Positives = 132/431 (30%), Gaps = 129/431 (29%)
Query: 252 HNFSFENEE--------LKITLEKTKNNLDLVHAE--MAQL--KSEYEGKCQELNQLVGD 299
H+ FE E L + + +N D + + K E + + + G
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 300 YLELDQGSDKQF-AIQRLMEDIDSGRSTMRDCMDCSSDY-----KSNNEENMSSLSEYDY 353
KQ +Q+ +E++ +Y E+ S+ Y
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLR------------INYKFLMSPIKTEQRQPSMMTRMY 112
Query: 354 NK------RDYPELRRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSC 407
+ D + + ++ P L L +L E A ++ G GK+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQ----PYLKLRQALL---ELRPAKNVLIDGVLGSGKTW 165
Query: 408 ----------FIYRFSKEVF----------------LNKLGSTLGVDFQMKTIRVD-ERN 440
+ ++F L KL + ++ T R D N
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW---TSRSDHSSN 222
Query: 441 VALQLWDTAGQERFRS--MTKNYFRRADGVMLLYDVTNERSFNSV------------KNW 486
+ L++ Q R +K Y + +++L +V N +++N+ K
Sbjct: 223 IKLRIHSI--QAELRRLLKSKPY---ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 487 VEAVEEVTENSIPIV-------------ICANKVDLRAD---AQAKG-----VKCIDREV 525
+ + T I + + +D R + + I +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 526 GEKLA--QQYGAIFMETSSKSGDNILDAL-IALSRHVY----VF-----IP----CVYLK 569
+ LA + + + + ++ L+ L A R ++ VF IP +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 570 DLPYTSVLIFI 580
D+ + V++ +
Sbjct: 398 DVIKSDVMVVV 408
Score = 57.6 bits (138), Expect = 1e-08
Identities = 81/534 (15%), Positives = 158/534 (29%), Gaps = 176/534 (32%)
Query: 76 KSNVNAGAMSSEGPERRNSDVQNAWSLLLAGIGEANVHKFLNTSGKKLADLYHELR---- 131
K+ V S + + + W + N + + + L L +++
Sbjct: 163 KTWVALDVCLSYKVQCKMDF-KIFW----LNLKNCNSPETVL---EMLQKLLYQIDPNWT 214
Query: 132 ----TSSNCPEIVTHFEGALSSL------------LDDVKRLHEDNEKLEEMFN-REREV 174
SSN + + L L L +V+ N K FN + +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-----NAKAWNAFNLSCKIL 269
Query: 175 HLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQEL--QA------H 226
R K + + L ++ ++ K++L++ ++ Q+L +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 227 LNL--------------FQKVNNVLKEKKIE---KQQDPTSD----HNFS-FENEELKIT 264
L++ ++ VN IE +P S F I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIP 388
Query: 265 --------LEKTKNNLDLVHAEMAQL----KSEYEGKCQELNQLVGDYLELDQGSDKQFA 312
+ K+++ +V ++ + K E + + YLEL + ++A
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSI---YLELKVKLENEYA 444
Query: 313 I-QRLMEDIDSGRSTMRDCMDCSSDYKSNNEENMSSLSEYDYNKRDYPELRRQHSNKSDS 371
+ + +++ + ++ D D Y Y Y+ + H
Sbjct: 445 LHRSIVDHYNIPKT--FDSDDLIPPYLDQ----------YFYSHIGH------H------ 480
Query: 372 QSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQM 431
L N +E F VFL+ F
Sbjct: 481 -------LKN-IEHPERMTL--------------------FRM-VFLD-------FRFLE 504
Query: 432 KTIRVDE--RNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEA 489
+ IR D N + + +T Q +F K Y D ER N++ +++
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKF---YKPYICDNDP-------KYERLVNAILDFLPK 554
Query: 490 VEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSK 543
+EE +IC+ DL + L + AIF E +
Sbjct: 555 IEE-------NLICSKYTDL---------------LRIALMAEDEAIFEEAHKQ 586
Score = 39.5 bits (91), Expect = 0.004
Identities = 51/347 (14%), Positives = 102/347 (29%), Gaps = 119/347 (34%)
Query: 33 FDIQ-----PTDSDAIFADLDHDGDGKVSLEDFAYGFRE---------FLNSDARRLKSN 78
F++ T + L +SL+ + +L+ + L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 79 VNA---------GAMSSEGPERRN-----------------------SDVQ--------- 97
V +G + ++ +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 98 --NAW------SLLLAGIGEANVHKFLNTSGKK-------------LADLYHELR-TSSN 135
+A SL+ + +++V +N K + +Y EL+ N
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 136 CPE----IVTHFEGALSSLLDDVKRLHEDNEKLEEMFNREREVHLER-LKGLEEELDVQV 190
IV H+ + DD+ + D ++ H+ LK +E
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----YFYS-----HIGHHLKNIEH------ 486
Query: 191 AKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAH---LNLFQKVNNVLKEKKIEKQQD 247
+ R + + L +K+ H++ A LN Q++ + I D
Sbjct: 487 ----PERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY--KPYICD-ND 538
Query: 248 PTSDH------NFSFENEELKITLEKTKNNLDLVH-AEMAQLKSEYE 287
P + +F + EE I + T DL+ A MA+ ++ +E
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYT----DLLRIALMAEDEAIFE 581
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 58.2 bits (141), Expect = 5e-10
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLE 58
M+ +Q ++ D G + EF+ TD A F LD + +G++S +
Sbjct: 99 MAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRD 158
Query: 59 DFAYGFREFLNSD 71
+F +FL
Sbjct: 159 EFLVTVNDFLFGL 171
Score = 39.7 bits (93), Expect = 0.001
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRE----LCTGFDIQPTDSDA-------IFADLDHDGDG 53
+++ + D G G I E++ + + ++ + L
Sbjct: 15 KMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGV 74
Query: 54 KVSLEDFAYGFREFLNSDARR 74
++S+E+ A + L
Sbjct: 75 RISVEEAAVNATDSLLKMKGE 95
Score = 37.4 bits (87), Expect = 0.006
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGF---------DIQPTDSDAIFADLDHDGDGKVS 56
+ +I EE T + S ++ +D D DG VS
Sbjct: 61 FLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVS 120
Query: 57 LEDFAYGFREF 67
L +F +
Sbjct: 121 LPEFKAFLQAV 131
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 60.3 bits (146), Expect = 5e-10
Identities = 51/273 (18%), Positives = 103/273 (37%), Gaps = 41/273 (15%)
Query: 301 LELDQGSDKQFAIQRLMEDIDSGRSTMRDCMDCSSDYKSNNEENMSSLSEYDYNKRDYPE 360
+ +D+ D + M+ G + R+ ++ DY S +Y+
Sbjct: 80 VTMDKWKDIEL---EKMKA--GGNAKFREFLESQEDYD----PCWSLQEKYNSRAAALFR 130
Query: 361 LRRQHSNKSDSQSTP---LLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVF 417
+ + S + + + +I+ G A GK+ +Y+
Sbjct: 131 DKVVALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKL----- 185
Query: 418 LNKLGS------TLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKNYFRRADGVMLL 471
KLG T+G F ++T+ +N++ +WD GQ++ R + ++YF+ G++ +
Sbjct: 186 --KLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239
Query: 472 YDVTNERSFNSVKNWVEAVEEVTENS-IPIVICANKVDLRADAQAKGVKCIDREVGEKLA 530
D + N + + + E +++ ANK DL A E+ +KL
Sbjct: 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL---PNAMNAA----EITDKLG 292
Query: 531 ----QQYGAIFMETSSKSGDNILDALIALSRHV 559
+ T + SGD + + L LS +
Sbjct: 293 LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 54.8 bits (132), Expect = 1e-09
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFA 61
+ + F+ D T I EEFR +C TD D ++ ++ + G++ DF
Sbjct: 24 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL 83
Query: 62 YGFR 65
F
Sbjct: 84 SRFS 87
Score = 28.6 bits (64), Expect = 1.9
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEF 26
++D Q + L+ G++ +F
Sbjct: 57 LTDEQFDRLWNEMPVNAKGRLKYPDF 82
Score = 28.6 bits (64), Expect = 2.1
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 42 AIFADLDHDGDGKVSLEDFAYGFREF 67
F + D +S E+F
Sbjct: 28 QEFENFDTMKTNTISREEFRAICNRR 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 2e-09
Identities = 35/219 (15%), Positives = 64/219 (29%), Gaps = 67/219 (30%)
Query: 4 LQLEELFKTCDKKGTGQI--GPEEFRELCTGFDIQP---TDSDAIFADLDHDGD------ 52
L+ E++FK ++ T + T F QP A F DL G
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSA-TQF-TQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 53 ----------------GKVSLEDFAY--GFR-EFLNSDARRLKSNVNAGAMSSEGPERRN 93
+S+E +R + R + + M + P R
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR-- 1816
Query: 94 SDVQNAWSLLLAGIGEANVHKFLNTSGKKLADL-----YHELRTSSNCPE--IVT--HFE 144
+ A + + + GK+ L Y N V
Sbjct: 1817 ---------VAASFSQEALQYVVERVGKRTGWLVEIVNY-------NVENQQYVAAGDLR 1860
Query: 145 G--ALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLKG 181
++++L+ +K D +L++ LE ++G
Sbjct: 1861 ALDTVTNVLNFIKLQKIDIIELQKSL------SLEEVEG 1893
Score = 58.9 bits (142), Expect = 4e-09
Identities = 93/624 (14%), Positives = 174/624 (27%), Gaps = 211/624 (33%)
Query: 5 QLEELF-KTCDKKGTGQIGPEEFR---ELCTGF------DIQPTDSDAIFADLDHDGDGK 54
QL+E F K + G +E EL F ++P+ L
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL------N 85
Query: 55 VSLEDFAYGFREFL-NSD----ARRL---------------KSNVNAGAMSSEGPERRNS 94
+ L +F +L +D A +L K+ + A M+ +++++
Sbjct: 86 LCLTEFE---NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 95 DVQNAWSLLL--AGIGEANVHKFL------NTSG--KKLADLYHELRTSSNCPEIVTHFE 144
S L G G A + NT ++L DLY T +V
Sbjct: 143 ------SALFRAVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQ---TY---HVLVGDLI 188
Query: 145 GALSSLLDDVKRLHEDNEKLEEMFNREREVHLER-LKGLEEELDVQV---AKV------V 194
+ L ++ R D EK+ + +++ L+ D + V
Sbjct: 189 KFSAETLSELIRTTLDAEKV-----FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 195 TQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNF 254
Q A Y + + + EL+++L + +
Sbjct: 244 IQL-----AHY----VVTAKLLGFTPGELRSYL---KGATGHSQ---------------- 275
Query: 255 SFENEELKITLEKTKNNLDLVHAE-MAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAI 313
LV A +A+ S + V + + F I
Sbjct: 276 ------------------GLVTAVAIAETDSW-----ESFFVSVRKAITV------LFFI 306
Query: 314 ----QRLMEDIDSGRSTMRDCMDCSSDYKSNNEENMSS-LSEYDYNKRDYPELRRQHSNK 368
+ S + D ++ NNE S LS + ++ + +N
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLE-------NNEGVPSPMLSISNLT-QEQVQDYVNKTNS 358
Query: 369 SDSQSTPL-LSLSNSLEP-----TGEPD--RAFKIVFAGDAAVG------------KSCF 408
+ +SL N +G P + A K F
Sbjct: 359 HLPAGKQVEISLVNG--AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 409 IYRF--------SKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQERFRSMTKN 460
RF S L + D + + +++ + ++DT R ++ +
Sbjct: 417 SNRFLPVASPFHSH--LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 461 YFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVIC------ANKVDL-RADA 513
R ++ + V W E T+ ++ + L +
Sbjct: 475 ISER-----IVDCIIRLP----V-KW----ETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 514 QAKGVKCI---------DREVGEK 528
GV+ I D + G K
Sbjct: 521 DGTGVRVIVAGTLDINPDDDYGFK 544
Score = 50.4 bits (120), Expect = 2e-06
Identities = 73/474 (15%), Positives = 140/474 (29%), Gaps = 160/474 (33%)
Query: 128 HELRTSSNCPEIVTHFEGALS-SLLDDV-KRLHEDNEKLEEMFNREREVHLERLKGLEEE 185
+ R P ++H G+L LL V +L+E FN+ E +E
Sbjct: 4 YSTR-----PLTLSH--GSLEHVLL--VPTASFFIASQLQEQFNKILPEPTEGFAADDE- 53
Query: 186 LDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQ-AHLNLFQKV-NNVLKEKKIE 243
E K+ + + + ++ + + F +V N L E
Sbjct: 54 ---------PTTPAELVGKF----------LGYVSSLVEPSKVGQFDQVLNLCLTE---- 90
Query: 244 KQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLEL 303
FEN L+ N+ +HA A+L E + + +L+ +Y+
Sbjct: 91 ------------FENCYLE------GND---IHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 304 DQGSDKQFAIQR---LMEDIDSGRSTMRDCMDCSSDY-----KSNNEENMSSLSE-YDYN 354
+ + F + L + G + + + N ++ L + Y
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQL---------VAIFGGQGNTDDYFEELRDLYQ-- 178
Query: 355 KRDYP---------------ELRRQHSNKSD--SQSTPLLS-LSNSLEPTGEPDRAFKIV 396
Y EL R + +Q +L L N P+ PD+ +
Sbjct: 179 --TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN---PSNTPDKDY--- 230
Query: 397 FAGDAAVGKSC---FIYRFSK-EVFLNKLGST---LGVDFQMKTIRVDERNVALQL---- 445
+ SC + + + V LG T L + T A+ +
Sbjct: 231 LLS-IPI--SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 446 -WDT-----------------AGQERFR------SMTKNYFRRADGV---MLLYDVTNER 478
W++ E + S+ ++ +GV ML ++N
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS--ISNL- 344
Query: 479 SFNSVKNWVEAVEEV--TENSIPI---------VICANKVDLRA-DAQAKGVKC 520
+ V+++V + I V+ L + + K
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Score = 41.2 bits (96), Expect = 0.001
Identities = 65/378 (17%), Positives = 107/378 (28%), Gaps = 155/378 (41%)
Query: 120 GKKLADLYHELRTSSNCPEIV----THFEGALS-SLLDDVKRLHEDNEKLEEMFNREREV 174
G DLY +TS ++ HF+ S+LD V +N +
Sbjct: 1632 GM---DLY---KTSKAAQDVWNRADNHFKDTYGFSILDIVI----NNPV-------NLTI 1674
Query: 175 HLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVN 234
H KG + R Y M ET V+
Sbjct: 1675 HFGGEKG-----------------KRIRENYS--------AMIFET-----------IVD 1698
Query: 235 NVLKEKKIEKQQDP-TSDHNFSFENEELKITLEKTKNNLDLVHAEMAQ---LKSEYEGKC 290
LK +KI K+ + ++ + F E L T + T+ L L+ E A LKS +G
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPALTLM--EKAAFEDLKS--KGLI 1753
Query: 291 Q-----------ELNQLV--GDYLELDQ--------GSDKQFAIQRLMEDIDSGRSTMRD 329
E L D + ++ G +Q + + GRS
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM----TMQVAVPRDELGRSNYGM 1809
Query: 330 C-MDCSSDYKSNNEENMSSLSEYDYNKRDYPELRRQHS--------NKSDSQSTPLLSLS 380
++ S ++E + + E + ++ N + Q
Sbjct: 1810 IAINPGRVAASFSQEALQYVVE---------RVGKRTGWLVEIVNYNVENQQ-------- 1852
Query: 381 NSLEPTGEPDRAFKIVFAGD-AAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDER 439
V AGD A+ + LN + ++ I + E
Sbjct: 1853 --------------YVAAGDLRALDTVTNV--------LNFIK--------LQKIDIIEL 1882
Query: 440 NVALQLWDTAGQERFRSM 457
+L L E
Sbjct: 1883 QKSLSL------EEVEGH 1894
Score = 35.0 bits (80), Expect = 0.087
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 32/124 (25%)
Query: 441 VALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPI 500
A +W+ A N+F+ G +L V N ++ E + + EN +
Sbjct: 1641 AAQDVWNRA---------DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 501 VICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDN-ILD-------AL 552
I VD + + I +E+ E Y F + +L AL
Sbjct: 1692 -IFETIVDGKLKT-----EKIFKEINEHS-TSY--TF------RSEKGLLSATQFTQPAL 1736
Query: 553 IALS 556
+
Sbjct: 1737 TLME 1740
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 55.1 bits (133), Expect = 7e-09
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 19/127 (14%)
Query: 394 KIVFAG-DAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIR-VDERNVALQLWDTAGQ 451
I+ AG + GK+ + S + + D + L D G
Sbjct: 50 SIIIAGPQNS-GKTSLLTLL-------TTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGH 101
Query: 452 ERFRSMTKNYFR----RADGVMLLYD-VTNERSFNSVKNWVEAV----EEVTENSIPIVI 502
+ R +Y + G++ + D + + + ++ + E EN I I+I
Sbjct: 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 161
Query: 503 CANKVDL 509
NK +L
Sbjct: 162 ACNKSEL 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 54.0 bits (130), Expect = 2e-08
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 395 IVFAG-DAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDTAGQER 453
I+ AG + GK+ + + + + T V Q D + L D G +
Sbjct: 15 IIIAGPQNS-GKTSLLTLLT----TDSVRPT--VVSQEPLSAADYDGSGVTLVDFPGHVK 67
Query: 454 FRSMTKNYF----RRADGVMLLYD-VTNERSFNSVKNWVEAV----EEVTENSIPIVICA 504
R +Y + G++ + D + + + ++ + E EN I I+I
Sbjct: 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127
Query: 505 NKVDL 509
NK +L
Sbjct: 128 NKSEL 132
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 48.7 bits (117), Expect = 6e-08
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAYG 63
E LFK D G G + EE + + + IF +D DG+G++ +FA
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 64 FR 65
+
Sbjct: 62 YG 63
Score = 29.5 bits (67), Expect = 0.42
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTG 32
++ L+ +FK+ D G G+I EF +
Sbjct: 33 KNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
Score = 28.7 bits (65), Expect = 0.70
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 41 DAIFADLDHDGDGKVSLEDFAYGFREF 67
+A+F ++D +GDG VS E+ +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKK 29
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 48.6 bits (117), Expect = 6e-08
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+ +F+ DK G++ +EFRE+ F T F ++D DG+G+++ ++F
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEF 59
Score = 26.3 bits (59), Expect = 6.1
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFREL 29
+ + + F+ D G G++ +EF
Sbjct: 34 FTQEDIVKFFEEIDVDGNGELNADEFTSC 62
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 53.2 bits (128), Expect = 2e-07
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+S +LE F+ D+ G G+I +E + ++ + + +D + DG V E+F
Sbjct: 423 LSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEF 482
Score = 39.3 bits (92), Expect = 0.003
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRE--------LCTGFDIQPTDSDA--IFADLDHDGDGK 54
+L ++F+ DK G GQ+ +E + FD+ +S+ I D D +G
Sbjct: 347 ELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGY 406
Query: 55 VSLEDF 60
+ +F
Sbjct: 407 IDYSEF 412
Score = 32.4 bits (74), Expect = 0.51
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ +++ + D G I EF + D + S + F D DG+GK+S
Sbjct: 387 QIESEVDAILGAADFDRNGYIDYSEF--VTVAMDRKSLLSKDKLESAFQKFDQDGNGKIS 444
Query: 57 LEDFAYGFREFLNSDA 72
+++ A F
Sbjct: 445 VDELASVFGLDHLESK 460
Score = 28.5 bits (64), Expect = 7.2
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 43 IFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNV 79
IF +D +GDG++ ++ G+ + +
Sbjct: 351 IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQ 387
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 52.8 bits (127), Expect = 2e-07
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+S +LE F+ D +G+I E + D+ ++ +++D + DG+V ++F
Sbjct: 415 LSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 474
Score = 39.7 bits (93), Expect = 0.002
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRE-------------LCTGFDIQPTDSDAIFADLDHDG 51
+L +F DK G GQ+ E E + D + +D D
Sbjct: 336 ELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDK 395
Query: 52 DGKVSLEDF 60
+G + +F
Sbjct: 396 NGYIEYSEF 404
Score = 34.3 bits (79), Expect = 0.12
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ +++++ D G I EF + D + S F D D GK+S
Sbjct: 379 AVEHEVDQVLDAVDFDKNGYIEYSEF--VTVAMDRKTLLSRERLERAFRMFDSDNSGKIS 436
Query: 57 LEDFAYGFREFLNSDA 72
+ A F
Sbjct: 437 STELATIFGVSDVDSE 452
Score = 29.3 bits (66), Expect = 3.8
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 43 IFADLDHDGDGKVSLEDFAYGFREFLNSDA 72
IF +D +GDG++ + G++E +
Sbjct: 340 IFHKMDKNGDGQLDRAELIEGYKELMRMKG 369
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 52.5 bits (126), Expect = 3e-07
Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)
Query: 144 EGALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARA 203
+ + +K++ +D +E+ N+ + K LEE + +EE
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNK----LTKERKLLEERV--SDLTTNLAEEEEKAK 1028
Query: 204 KYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKI 263
+ K K E EL+ L +K L++ K + + + + + EL+
Sbjct: 1029 NLTKLKN----KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD---LHEQIAELQA 1081
Query: 264 TLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQRLMEDIDSG 323
+ + K L E+ + E + + N + EL+ I L ED++S
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES------HISDLQEDLESE 1135
Query: 324 RSTMRDCMDCSSDYKSNNEENMSSLSEYDYNKRDYPELRRQ 364
++ D E + L + ELR
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Score = 51.4 bits (123), Expect = 7e-07
Identities = 38/245 (15%), Positives = 98/245 (40%), Gaps = 18/245 (7%)
Query: 155 KRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAIL-- 212
+ LHE ++EE + K +++++ ++ + +E AR K + EK
Sbjct: 927 EILHEMEARIEEE-EERSQQLQAEKKKMQQQMLDLEEQL--EEEEAARQKLQLEKVTADG 983
Query: 213 -MRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNN 271
++KME + ++ N K +L+E+ + + + + +LK E +
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Query: 272 LDL-------VHAEMAQLKSEYEGKCQELNQLVGDYLEL-----DQGSDKQFAIQRLMED 319
L++ E+ ++K + EG+ +L++ + + Q + K+ +Q +
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Query: 320 IDSGRSTMRDCMDCSSDYKSNNEENMSSLSEYDYNKRDYPELRRQHSNKSDSQSTPLLSL 379
++ S + + + +S+ + L + + +R S + ++ T L
Sbjct: 1104 LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163
Query: 380 SNSLE 384
++
Sbjct: 1164 LDTTA 1168
Score = 48.3 bits (115), Expect = 6e-06
Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 20/237 (8%)
Query: 138 EIVTHFEGALSSLLDDVKRLHEDNEKLEEMFNREREVH------LERLKGLEEELDVQVA 191
E E L L +L E+ L+E E E++ RL ++EL+ +
Sbjct: 871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930
Query: 192 KVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSD 251
++ + +EE + + +KM+ + +L+ L + L+ +K+
Sbjct: 931 EMEARIEEEEERSQQLQAE--KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988
Query: 252 HNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQF 311
+ E+ L K + L+ +++ +E E K + L +L + +
Sbjct: 989 EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM-------- 1040
Query: 312 AIQRLMEDIDSGRSTMRDCMDCSSDYKSNNEENMSSLSEYDYNKRDYPELRRQHSNK 368
I L + + ++ + + + ++E + EL+ Q + K
Sbjct: 1041 -ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL---QAQIAELKAQLAKK 1093
Score = 46.4 bits (110), Expect = 3e-05
Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 8/184 (4%)
Query: 144 EGALSSLLDDVKRLHEDNEKLEEMFNREREV--HLERLKG-LEEELD-----VQVAKVVT 195
E + L + K L E L E E +L +LK E + ++ +
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 196 QAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFS 255
Q E+ + K E E + L ++ ++ K L+ + + + +N
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115
Query: 256 FENEELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQR 315
+ EL+ + + +L+ A + + + +EL L + + + Q ++
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
Query: 316 LMED 319
Sbjct: 1176 SDYK 1179
Score = 39.8 bits (93), Expect = 0.003
Identities = 31/227 (13%), Positives = 84/227 (37%), Gaps = 19/227 (8%)
Query: 140 VTHFEGALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLKGLEE-ELDVQVAKVVTQAK 198
VT E + + ++++R E +K E + H + + + +Q +
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA 911
Query: 199 EEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFEN 258
EE R + +K +++E E++A + ++ + L+ +K + QQ +
Sbjct: 912 EEMRVRLAAKK----QELEEILHEMEARIEEEEERSQQLQAEKKKMQQ----------QM 957
Query: 259 EELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDK-QFAIQRLM 317
+L+ LE+ + + E + + ++ + +L + + + L
Sbjct: 958 LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017
Query: 318 EDIDSGRSTMRDCMDCSSDYKSNNEENMSSLSEYDYNKRDYPELRRQ 364
++ ++ + ++S E L + ++ EL +
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKK---EEKSRQELEKI 1061
Score = 36.7 bits (85), Expect = 0.022
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 143 FEGALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKE--- 199
EG S L + + L +L+ ++E L+ E+ Q + + +E
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQL-AKKEEELQAALARLEDETSQKNNALKKIRELES 1123
Query: 200 ---EARAKYEQEKAIL------MRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQD 247
+ + E EKA R + E + L+ L +E + +D
Sbjct: 1124 HISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
Score = 32.5 bits (74), Expect = 0.52
Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 11/128 (8%)
Query: 121 KKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVKRLHEDNEKLEEMFNREREVH---LE 177
K L E E + + ++ L + + E+ + E L+
Sbjct: 1060 KIKRKLEGESSDL---HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 178 RLKGLEEEL-----DVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQK 232
+++ LE + D++ K E+ + +E L ++E L
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Query: 233 VNNVLKEK 240
+K
Sbjct: 1177 DYKDDDDK 1184
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 51.6 bits (124), Expect = 4e-07
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
S+ +L F D +G+I EE L I + + + D + D + ++F
Sbjct: 432 FSEERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEF 491
Score = 39.3 bits (92), Expect = 0.003
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRE----------LCTGFDIQPTDSDAIFADLDHDGDGK 54
+L ++FK DK G GQ+ +E E + D I ++D D +G
Sbjct: 356 ELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGY 415
Query: 55 VSLEDF 60
+ +F
Sbjct: 416 IEYSEF 421
Score = 32.4 bits (74), Expect = 0.48
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ +++ + K D G I EF + D Q S+ F D D GK++
Sbjct: 396 NVEEEVDNILKEVDFDKNGYIEYSEF--ISVCMDKQILFSEERLRRAFNLFDTDKSGKIT 453
Query: 57 LEDFAYGFREFLNSDA 72
E+ A F S+
Sbjct: 454 KEELANLFGLTSISEK 469
Score = 28.5 bits (64), Expect = 7.0
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 42 AIFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNV 79
IF LD +GDG++ ++ G+ N +
Sbjct: 359 DIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKN 396
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 49.3 bits (118), Expect = 7e-07
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDFAYG 63
L F+ D+ G+ + +EFR+ + ++ + D +G G + LE+F
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRA 98
Query: 64 FREFLNSD 71
R ++
Sbjct: 99 LRPPMSQA 106
Score = 35.8 bits (83), Expect = 0.020
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLE 58
+ + E + + D+ G+G + EEF Q ++ A FA LD GDG V+++
Sbjct: 70 LDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVD 129
Query: 59 DFAYGFREFLNSDAR 73
D + + R
Sbjct: 130 DLRGVYSGRAHPKVR 144
Score = 33.5 bits (77), Expect = 0.11
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---------DAIFADLD 48
MS + + F D+ G G + ++ R + +G S + D
Sbjct: 103 MSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFD 162
Query: 49 H-DGDGKVSLEDF 60
+ DG+V+L +F
Sbjct: 163 SSEKDGQVTLAEF 175
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 48.8 bits (117), Expect = 8e-07
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+S +L F+ D G+G+I EE L ++ + + D + DG+V E+F
Sbjct: 120 LSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEF 179
Score = 36.5 bits (85), Expect = 0.010
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRE-----------LCTGFDIQPTDSD--AIFADLDHDG 51
+L ++F+ D G GQ+ +E E + D +++ I +D D
Sbjct: 41 ELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDR 100
Query: 52 DGKVSLEDF 60
+G + +F
Sbjct: 101 NGYIEYSEF 109
Score = 31.5 bits (72), Expect = 0.46
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ +++ + ++ D G I EF +C D Q S A F D DG GK++
Sbjct: 84 QIEAEVDHILQSVDFDRNGYIEYSEFVTVCM--DKQLLLSRERLLAAFQQFDSDGSGKIT 141
Query: 57 LEDFAYGFREFLNSDA 72
E+ F D
Sbjct: 142 NEELGRLFGVTEVDDE 157
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 46.0 bits (110), Expect = 8e-07
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 2 SDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVS 56
+ LE+L F+ D+ G G I +E R G DA+ + D D DG+V+
Sbjct: 1 ARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVN 60
Query: 57 LEDFA 61
E+FA
Sbjct: 61 YEEFA 65
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 50.5 bits (121), Expect = 1e-06
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAIFADLDHDGDGKVSLE 58
+S ++E FK DK G+G+I +E +L IQ + ++I +D++ DG+V
Sbjct: 414 LSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFN 473
Query: 59 DFAYGFREFLNSD 71
+F + F+ ++
Sbjct: 474 EFVEMLQNFVRNE 486
Score = 38.1 bits (89), Expect = 0.007
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 16/72 (22%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRE----------------LCTGFDIQPTDSDAIFADLD 48
QL E+F+ D G + +E + D++ LD
Sbjct: 332 QLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLD 391
Query: 49 HDGDGKVSLEDF 60
DG G + +F
Sbjct: 392 MDGSGSIEYSEF 403
Score = 32.0 bits (73), Expect = 0.57
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ Q++ L D G+G I EF + + D S F D DG GK+S
Sbjct: 378 TIEDQIDSLMPLLDMDGSGSIEYSEF--IASAIDRTILLSRERMERAFKMFDKDGSGKIS 435
Query: 57 LEDFAYGFREFLNS 70
++ F + +S
Sbjct: 436 TKELFKLFSQADSS 449
Score = 32.0 bits (73), Expect = 0.69
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 43 IFADLDHDGDGKVSLEDFAYGFREFLNSDARRLKSNVNAGAMSSE 87
IF LD + DG + ++ G+ EF+ S + + E
Sbjct: 336 IFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIE 380
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 48.6 bits (116), Expect = 1e-06
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLE 58
+ + +F DK G+G I +E++ I P+ +A F D D G + ++
Sbjct: 110 LIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVD 169
Query: 59 DFAYGFREFLNS 70
+ F +
Sbjct: 170 EMTRQHLGFWYT 181
Score = 32.4 bits (74), Expect = 0.25
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTG-----FDIQPTDSD--AIFADLDHDGDGKVSL 57
+ + +F D G G+I +E + + P + + + G G
Sbjct: 21 RHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYG 80
Query: 58 EDFAYGFREFLNSDARRLKSNVNAGAMSSEGPERR 92
++ A F +FL+ + S + A + R
Sbjct: 81 KEIA--FPQFLDGWKQLATSELKKWARNEPTLIRE 113
Score = 31.3 bits (71), Expect = 0.60
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA 42
S E F+ CD G + +E GF D +A
Sbjct: 146 PSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGF-WYTLDPEA 186
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 45.7 bits (109), Expect = 2e-06
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP---TDS--DAIFADLDHDGDGKV 55
+ Q++++F D+ +G I EE + F T + A A D DGDGK+
Sbjct: 39 KTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKI 98
Query: 56 SLEDFA 61
+E+F
Sbjct: 99 GVEEFQ 104
Score = 30.7 bits (70), Expect = 0.40
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+S +E +C + + F P +F LD D G + E+
Sbjct: 7 LSAKDIESALSSCQAADS--FNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEEL 64
Query: 61 AYGFREF 67
+ F
Sbjct: 65 QLFLKNF 71
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 45.3 bits (108), Expect = 2e-06
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
L+E FK DK G I E R + + TD + + + D DGDG+V+ E+F
Sbjct: 11 LKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEF 67
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 47.7 bits (114), Expect = 2e-06
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT--GFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ E F+ D G G++ E R G+ + A+ D G + +D+
Sbjct: 94 SMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDY 151
Score = 38.4 bits (90), Expect = 0.003
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDFA 61
+L E F+ D G+G I E + + + + + D + G+++ ++F
Sbjct: 28 ELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFK 86
Score = 38.4 bits (90), Expect = 0.003
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+S+ + L + D++ G +G +++ EL + FA D + G+V+
Sbjct: 126 VSEQTFQALMRKFDRQRRGSLGFDDYVELSIFVC---RVRNV-FAFYDRERTGQVTF--- 178
Query: 61 AYGFREFL 68
F F+
Sbjct: 179 --TFDTFI 184
Score = 34.2 bits (79), Expect = 0.064
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 14 DKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67
DK +G+I +EF++L F D GDG++ +
Sbjct: 73 DKNHSGEITFDEFKDLHH----FILSMREGFRKRDSSGDGRLDSNEVRAALLSS 122
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 47.2 bits (113), Expect = 2e-06
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT--GFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ +F+T D+ +G I E ++ + G+ + D + D G G+++ +DF
Sbjct: 75 DWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 132
Score = 36.8 bits (86), Expect = 0.006
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAI---FADLDHDGDGKVSLEDF 60
L +F+ DK +G I E ++ + P + + + D + V+ +F
Sbjct: 8 FLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEF 66
Score = 32.2 bits (74), Expect = 0.28
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 14 DKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67
D++ + EF + TD +F D D G + + F
Sbjct: 54 DRENKAGVNFSEFTGVWK----YITDWQNVFRTYDRDNSGMIDKNELKQALSGF 103
Score = 31.8 bits (73), Expect = 0.33
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSL--E 58
+SD + L + D++G GQI ++F + C I IF D D DG + + E
Sbjct: 107 LSDQFHDILIRKFDRQGRGQIAFDDFIQGC----IVLQRLTDIFRRYDTDQDGWIQVSYE 162
Query: 59 DF 60
+
Sbjct: 163 QY 164
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 48.0 bits (114), Expect = 2e-06
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPT---DSDAIFADLDHDGDGKVSL 57
+L +F D G + EEF+ + D A+F +LD +G G V+
Sbjct: 127 YDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTF 186
Query: 58 EDFA 61
++FA
Sbjct: 187 DEFA 190
Score = 34.1 bits (78), Expect = 0.082
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 12/68 (17%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFD------------IQPTDSDAIFADLDHDGD 52
+ ELFK DK TG++ +E C + + +
Sbjct: 49 RRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENK 108
Query: 53 GKVSLEDF 60
G +F
Sbjct: 109 GSEDFVEF 116
Score = 31.0 bits (70), Expect = 0.74
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 2/74 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLE 58
+ + G EF E + +F ++D G+ V E
Sbjct: 91 TKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEE 150
Query: 59 DFAYGFREFLNSDA 72
+F + A
Sbjct: 151 EFKRAVPKLEAWGA 164
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 45.4 bits (108), Expect = 3e-06
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP---TDS--DAIFADLDHDGDGKVSLED 59
++++F DK +G I +E + GF + + A D DGDGK+ +E+
Sbjct: 42 DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEE 101
Query: 60 FA 61
F+
Sbjct: 102 FS 103
Score = 31.9 bits (73), Expect = 0.13
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+S +++ + ++F ++ D +F LD D G + ++
Sbjct: 6 LSAEDIKKAIGAFTAADS--FDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDEL 63
Query: 61 AYGFREF 67
+ F
Sbjct: 64 GSILKGF 70
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 46.8 bits (112), Expect = 3e-06
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
++ F+ D TG+I + R + TD A+ + D DGDG+++ +F
Sbjct: 98 IKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEF 154
Score = 36.8 bits (86), Expect = 0.007
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
+ E F D G + E + + + + + D +G + +DF
Sbjct: 25 IYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDF 81
Score = 33.3 bits (77), Expect = 0.099
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ ++ +L D +G + ++F + I D F D D GK+S
Sbjct: 56 LPKREILDLIDEYDSEGRHLMKYDDFYIVMGEK-ILKRDPLDEIKRAFQLFDDDHTGKIS 114
Query: 57 LEDFAYGFREF 67
+++ +E
Sbjct: 115 IKNLRRVAKEL 125
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 46.3 bits (111), Expect = 3e-06
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
++ + FK D TG+I + + + TD + + D DGDG+VS ++F
Sbjct: 80 EILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEF 137
Score = 37.1 bits (87), Expect = 0.004
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
++ E F D GTG I +E + +P + + +++D +G GK++ DF
Sbjct: 7 EIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDF 64
Score = 32.4 bits (75), Expect = 0.14
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+++++ DK+GTG++ +F + T + D+ F D D GK+S
Sbjct: 39 PKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQK-MSEKDTKEEILKAFKLFDDDETGKIS 97
Query: 57 LEDFAYGFREF 67
++ +E
Sbjct: 98 FKNLKRVAKEL 108
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 45.9 bits (110), Expect = 3e-06
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
L E FK D+ G G I E R + T + TD D + + D DGDG ++ E+F
Sbjct: 85 LIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEF 141
Score = 34.8 bits (81), Expect = 0.027
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKV 55
+++ Q+ E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 63
Query: 56 SLEDF 60
+F
Sbjct: 64 DFPEF 68
Score = 29.8 bits (68), Expect = 1.4
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
++ +L+++ D G G I EF L ++ DS+ F D DG+G +S
Sbjct: 43 PTEAELQDMINEVDADGNGTIDFPEFLSLMARK-MKEQDSEEELIEAFKVFDRDGNGLIS 101
Query: 57 LEDFAYGFREF 67
+ +
Sbjct: 102 AAELRHVMTNL 112
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 44.9 bits (107), Expect = 4e-06
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ---PTDS--DAIFADLDHDGDGKV 55
MS ++++FK D +G I EE + + F TD+ A D DGDGK+
Sbjct: 39 MSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKI 98
Query: 56 SLEDFA 61
+++F
Sbjct: 99 GIDEFE 104
Score = 31.0 bits (71), Expect = 0.32
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ +++ +G+ ++F L + D +F +D D G + E+
Sbjct: 7 LKADDIKKALDAVKAEGS--FNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEEL 64
Query: 61 AYGFREF 67
+ + F
Sbjct: 65 KFVLKSF 71
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 46.0 bits (110), Expect = 4e-06
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S+ +L F+ DK G I EE E+ T+ + + D D + DG++ ++
Sbjct: 94 SEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDE 153
Query: 60 F 60
F
Sbjct: 154 F 154
Score = 36.8 bits (86), Expect = 0.007
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
+ + F D G G I +E + PT + AI ++D DG G + E+F
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 78
Score = 31.0 bits (71), Expect = 0.59
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD------AIFADLDHDGDGK 54
+ +L+ + + D+ G+G I EEF + + F D + DG
Sbjct: 53 PTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGF 112
Query: 55 VSLEDFAYGFREF 67
+ +E+ R
Sbjct: 113 IDIEELGEILRAT 125
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 46.4 bits (111), Expect = 4e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+F
Sbjct: 86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
Score = 35.6 bits (83), Expect = 0.020
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
+E F DK G G I +E + PT+++ + ++D DG+G + +F
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Score = 33.3 bits (77), Expect = 0.11
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADL-------DHDGDG 53
++D +++E+ + D G GQ+ EEF ++ T + A +
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK-GGGGGAAARKEVIRNKIRAIGKMARV 175
Query: 54 KVSL 57
L
Sbjct: 176 FSVL 179
Score = 30.6 bits (70), Expect = 0.81
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
++ +L+++ D G G I EF + ++ TDS+ F D DG+G +S
Sbjct: 44 PTEAELQDMINEVDADGNGTIDFPEFLTMMARK-MKDTDSEEEIREAFRVFDKDGNGYIS 102
Query: 57 LEDFAYGFREF 67
+ +
Sbjct: 103 AAELRHVMTNL 113
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 44.6 bits (106), Expect = 4e-06
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
++ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+F
Sbjct: 30 EIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 87
Score = 26.9 bits (60), Expect = 6.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTG 32
++D +++E+ + D G GQ+ EEF ++ T
Sbjct: 62 LTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 93
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 46.0 bits (110), Expect = 4e-06
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+L +LF+ DK G I EE + + T+ + + D D + DG++ ++F
Sbjct: 96 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
Score = 32.1 bits (74), Expect = 0.26
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 1 MSDLQLEEL---FKTCDKKGT-GQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGK 54
+++ Q E F G I +E ++ PT + + ++D DG G
Sbjct: 12 LTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGT 71
Query: 55 VSLEDF 60
V ++F
Sbjct: 72 VDFDEF 77
Score = 29.1 bits (66), Expect = 2.2
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADL-------DHDGDG 53
+ +L+E+ D+ G+G + +EF + ++ +L D + DG
Sbjct: 52 PTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS-MKDDSKGKSEEELSDLFRMFDKNADG 110
Query: 54 KVSLEDFAYGFREF 67
+ LE+ +
Sbjct: 111 YIDLEELKIMLQAT 124
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 44.1 bits (105), Expect = 4e-06
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKV 55
+S+ + E F D G G I +E + PT DAI ++D DG G +
Sbjct: 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTI 73
Query: 56 SLEDF 60
E+F
Sbjct: 74 DFEEF 78
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 45.6 bits (108), Expect = 5e-06
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+E + D G+I + + + T + +++ +S DF
Sbjct: 51 AFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDF 108
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 46.0 bits (110), Expect = 5e-06
Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
++ + F+ D +G I ++ R + T+ + A+ D + D ++ ++F
Sbjct: 102 EILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEF 159
Score = 36.8 bits (86), Expect = 0.007
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
++ E F D G+G I +E + +P + + +++D DG G + E+F
Sbjct: 29 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEF 86
Score = 33.3 bits (77), Expect = 0.10
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+++++ DK G+G I EEF + T + DS F D D G ++
Sbjct: 61 PKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAK-MGERDSREEILKAFRLFDDDNSGTIT 119
Query: 57 LEDFAYGFREF 67
++D +E
Sbjct: 120 IKDLRRVAKEL 130
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 46.1 bits (110), Expect = 5e-06
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDG------- 53
+ L+ F DK G I + L + D D F + G
Sbjct: 105 IESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHII 164
Query: 54 -KVSLEDF 60
K+S ++F
Sbjct: 165 NKISFQEF 172
Score = 45.0 bits (107), Expect = 1e-05
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ ELF D G + E + I+ D + I LD + G ++ +F
Sbjct: 40 YINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEF 95
Score = 31.5 bits (72), Expect = 0.41
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAI---FADLDHDGDGKVSL 57
+ + + + D G I EF C + +S + F +D D DG +S
Sbjct: 70 IKKWDINRILQALDINDRGNITYTEFMAGCY--RWKNIESTFLKAAFNKIDKDEDGYISK 127
Query: 58 EDFAYGFREFLNSDA 72
D + + +
Sbjct: 128 SDIVSLVHDKVLDNN 142
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 47.5 bits (113), Expect = 6e-06
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS-DAIFADLDHDGDGKVSLEDFA 61
L F+ D G + +EFRE DA+F D D V ++
Sbjct: 189 ALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYV 246
Score = 45.6 bits (108), Expect = 2e-05
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSL 57
+ L L L+ D +GQ+ EE +++ I + + F+ +D D +S
Sbjct: 250 LCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSY 309
Query: 58 EDF 60
++F
Sbjct: 310 QEF 312
Score = 41.3 bits (97), Expect = 6e-04
Identities = 9/58 (15%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
L +LF + G+G+ ++ +++ + + +F +++D G++S
Sbjct: 123 ILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITL 180
Score = 36.7 bits (85), Expect = 0.017
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ LF+ D+ + +G E+ L + ++A D D G++S E+
Sbjct: 220 DKKSVQDALFRYADEDESDDVGFSEYVHLG----LCLLVLRILYAFADFDKSGQLSKEEV 275
Query: 61 AYGFREF 67
+
Sbjct: 276 QKVLEDA 282
Score = 32.9 bits (75), Expect = 0.25
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ + L++LF + G++ + A F +D + +G +S ++F
Sbjct: 155 IPEGPLKKLFVMVENDTKGRMSYITLVAVA----NDLAALVADFRKIDTNSNGTLSRKEF 210
Query: 61 AYGFREF 67
F
Sbjct: 211 REHFVRL 217
Score = 31.3 bits (71), Expect = 0.77
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+L L K + +G + + + D +F G GK S +D
Sbjct: 88 EKQRLASLLKDLEDDASGYNRLRPSKPMLSEEDTN--ILRQLFLSSAVSGSGKFSFQDLK 145
Query: 62 YGFREF 67
++
Sbjct: 146 QVLAKY 151
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 45.3 bits (108), Expect = 7e-06
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+ F+ DK+ TG++ + R + TG + TD+ D + ++ D +G++ + F
Sbjct: 85 FVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKF 141
Score = 37.2 bits (87), Expect = 0.004
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 5 QLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLE 58
F DKKG G I + + PT+ D I AD ++L+
Sbjct: 2 ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
Query: 59 DF 60
Sbjct: 62 QI 63
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 45.3 bits (107), Expect = 7e-06
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
+ + D G G I + + + T + + ++ + S DF
Sbjct: 49 AFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDF 106
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 45.6 bits (109), Expect = 7e-06
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
L F DK G+G I P+E ++ C F ++ + + D+D D DG++ +F
Sbjct: 101 LFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFV 156
Score = 37.5 bits (88), Expect = 0.004
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKV 55
+S+ ++ L F D +GQI EE + +S+ + D D G +
Sbjct: 21 LSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTI 80
Query: 56 SLEDF 60
++F
Sbjct: 81 DYKEF 85
Score = 32.1 bits (74), Expect = 0.26
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ + ++ +L + D +G I +EF + + + A F D DG G ++
Sbjct: 60 LKESEILDLMQAADVDNSGTIDYKEFIAATL--HLNKIEREDHLFAAFTYFDKDGSGYIT 117
Query: 57 LEDFAYGFREF 67
++ EF
Sbjct: 118 PDELQQACEEF 128
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 46.1 bits (110), Expect = 7e-06
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS-------DAIFADLDHDGDG 53
+S + F+ D G+I E + + + + + D+D + DG
Sbjct: 119 LSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDG 178
Query: 54 KVSLEDF 60
K+ +F
Sbjct: 179 KIDFHEF 185
Score = 37.2 bits (87), Expect = 0.007
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ-PTDSDAIFADLDHDGDGKVSLEDF 60
+L+ F D+ G G I E+ ++ ++ P + D + +D DG GK+ +F
Sbjct: 53 KLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEF 109
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 44.8 bits (107), Expect = 7e-06
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+ L+ L+K D G G++ EE I+ D +GDG ++LE+F
Sbjct: 73 DKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIE--KVAEQVMKADANGDGYITLEEFL 130
Score = 43.7 bits (104), Expect = 2e-05
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
E LFK D G G + EE + + + IF +D DG+G++ +F
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
Score = 29.8 bits (68), Expect = 1.1
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGF-DIQPTDSD----AIFADLDHDGDGKV 55
++ L+ +FK+ D G G+I EF + +D ++ +D DGDGK+
Sbjct: 33 KNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKL 92
Query: 56 SLEDFAYGFREF 67
+ E+ F++
Sbjct: 93 TKEEVTSFFKKH 104
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 46.1 bits (110), Expect = 7e-06
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
L F DK G+G I +E ++ C F + D + ++D D DG++ +FA
Sbjct: 84 LVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFA 139
Score = 37.6 bits (88), Expect = 0.005
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
L+ELFK D +G I +E ++ + +S+ + D D G + +F
Sbjct: 11 GLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEF 68
Score = 29.9 bits (68), Expect = 1.5
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ + ++++L D +G I EF + + + + F+ D DG G ++
Sbjct: 43 LMESEIKDLMDAADIDKSGTIDYGEFIAATV--HLNKLEREENLVSAFSYFDKDGSGYIT 100
Query: 57 LEDFAYGFREF 67
L++ ++F
Sbjct: 101 LDEIQQACKDF 111
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 45.2 bits (108), Expect = 8e-06
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+L E F+ DK+G G I + RE+ D + DA+ ++D DG G V E+F
Sbjct: 92 ELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEF 149
Score = 32.5 bits (75), Expect = 0.16
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 5 QLEELFKTCDKK-GTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
LE F+ + G+G++ ++ + IQ T S + + D G+G + + F
Sbjct: 14 LLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSF 72
Score = 31.0 bits (71), Expect = 0.55
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGF---DIQPTDSD----AIFADLDHDGDG 53
+ + +L D G G I + F+ + F ++ P F D +G+G
Sbjct: 47 QTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNG 106
Query: 54 KVSLEDFAYGFREF 67
+S + E
Sbjct: 107 YISTDVMREILAEL 120
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 43.3 bits (103), Expect = 9e-06
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
L+ELFK D +G I +E ++ + +S+ + D D G + +F
Sbjct: 24 GLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEF 81
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 42.9 bits (102), Expect = 9e-06
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKV 55
+S+ Q +E+ F D TG I E + + + D +G+G +
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYI 60
Query: 56 SLEDF 60
+DF
Sbjct: 61 GFDDF 65
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 43.8 bits (104), Expect = 1e-05
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP---TDS--DAIFADLDHDGDGKV 55
MS Q++++F+ D +G + +E + F T+S ++ D+DGDGK+
Sbjct: 38 MSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKI 97
Query: 56 SLEDFA 61
++F
Sbjct: 98 GADEFQ 103
Score = 30.3 bits (69), Expect = 0.57
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+S + + C T P++F + + + IF +D+D G + ++
Sbjct: 6 LSAEDIAAALQECQDPDT--FEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDEL 63
Query: 61 AYGFREFLNSDARRL 75
Y ++F SDAR L
Sbjct: 64 KYFLQKF-QSDAREL 77
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 45.6 bits (108), Expect = 1e-05
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGF-------DIQPTDS-DAIFADLDHDGDGKVSL 57
L+ FK D G G I E ++ + P + + +F +D + DG+++L
Sbjct: 95 LKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTL 154
Query: 58 EDF 60
E+F
Sbjct: 155 EEF 157
Score = 35.5 bits (82), Expect = 0.028
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDFA 61
F + +G EF+ L + + D ++ D + DG V +F
Sbjct: 23 VWYRTFM--MEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFI 80
Query: 62 YGFREFLNSD 71
+
Sbjct: 81 AAVNLIMQEK 90
Score = 29.0 bits (65), Expect = 3.4
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCT 31
+ +F D G++ EEF
Sbjct: 137 INLVFHKIDINNDGELTLEEFINGMA 162
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 44.4 bits (106), Expect = 1e-05
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAY 62
+ F D++ +G I + REL T + TD D ++ + D G + +F
Sbjct: 78 IRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTR 136
Score = 32.8 bits (76), Expect = 0.11
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 5 QLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
Q++E F D+ G I E+ ++ PTD + + G ++ F
Sbjct: 5 QIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEY--LEGMMSEAPGPINFTMF 61
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 42.6 bits (101), Expect = 1e-05
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS-DAIFADLDHDGDGKVSLEDF 60
+E +FK D G G+I E + D + A++D DGDG + +F
Sbjct: 5 MERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEF 60
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 44.5 bits (106), Expect = 1e-05
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAY 62
+ FK D G G I EL T + T ++A D G V ++ Y
Sbjct: 97 IMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICY 155
Score = 30.2 bits (69), Expect = 1.0
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 2 SDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLE 58
+ ++E+ F D+ G I ++ RE + + + G ++
Sbjct: 20 DETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNV-KNEELDAMIKEASGPINFT 78
Query: 59 DF 60
F
Sbjct: 79 VF 80
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 43.4 bits (103), Expect = 1e-05
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP---TDS--DAIFADLDHDGDGKV 55
S +++ F D+ +G I +E + F TD+ A D DGDG +
Sbjct: 39 KSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAI 98
Query: 56 SLEDFA 61
++++A
Sbjct: 99 GVDEWA 104
Score = 32.6 bits (75), Expect = 0.089
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
++D + K C+ + + F D F +D D G + ++
Sbjct: 7 LADADVAAALKACEAADS--FNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDEL 64
Query: 61 AYGFREF 67
+ F
Sbjct: 65 KLFLQVF 71
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 43.4 bits (103), Expect = 1e-05
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP---TDS--DAIFADLDHDGDGKV 55
S QL+E+F+ D +G I +E + F+ T S A DHDGDGK+
Sbjct: 38 KSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKI 97
Query: 56 SLEDFA 61
E+F
Sbjct: 98 GAEEFQ 103
Score = 31.1 bits (71), Expect = 0.25
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+S + + C + P++F ++ + IF LD+D G + ++
Sbjct: 6 LSPSDIAAALRDCQAPDS--FSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDEL 63
Query: 61 AYGFREF 67
Y + F
Sbjct: 64 KYFLQRF 70
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 44.8 bits (106), Expect = 2e-05
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---------DAIFADLDHDGDGKVS 56
L FK D G G I E + + + +F +D +GDG++S
Sbjct: 90 LRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELS 149
Query: 57 LEDF 60
LE+F
Sbjct: 150 LEEF 153
Score = 39.0 bits (91), Expect = 0.002
Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 1 MSDLQLEELFKT-CDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVS 56
+S + + +K + +GQ+ EF++ ++ P+ + + +F D + DG +
Sbjct: 11 LSATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYID 70
Query: 57 LEDFAYGFREFLNSD 71
++ L
Sbjct: 71 FMEYVAALSLVLKGK 85
Score = 27.8 bits (62), Expect = 8.0
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDI------QPTDSDAIFADLDHDGDGKVSLED 59
+F D G G++ EEF E ++ + D I + +DG + E+
Sbjct: 134 NMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSLDLTHIVKLIQNDGKNPHAPEE 192
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 44.5 bits (106), Expect = 2e-05
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ FK D G G+I EE + + DI+ D ++ ++D +GDG++
Sbjct: 126 LKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEID 185
Query: 57 LEDFA 61
+F
Sbjct: 186 FHEFM 190
Score = 39.9 bits (94), Expect = 0.001
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
L +F D +G + +E + Q D + D+D + G++ DF
Sbjct: 58 NLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDF 115
Score = 29.9 bits (68), Expect = 1.6
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ ++ + D +GQI +F D Q F D DG+GK+S
Sbjct: 90 KIPPDIHQVLRDIDSNASGQIHYTDFLAATI--DKQTYLKKEVCLIPFKFFDIDGNGKIS 147
Query: 57 LEDF 60
+E+
Sbjct: 148 VEEL 151
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 42.6 bits (101), Expect = 2e-05
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP---TDS--DAIFADLDHDGDGKV 55
S +++ F D+ +G I +E + F TD+ A AD D DGDG +
Sbjct: 38 KSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMI 97
Query: 56 SLEDFA 61
+++FA
Sbjct: 98 GVDEFA 103
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 44.8 bits (106), Expect = 3e-05
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGF---------DIQPTD-SDAIFADLDHDGD 52
D ++ F+ D K G I +E +++ D D D F + D D
Sbjct: 121 DDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHD 180
Query: 53 GKVSLEDFAYGFRE 66
GK+ E++
Sbjct: 181 GKIDKEEWRSLVLR 194
Score = 33.3 bits (76), Expect = 0.15
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 4 LQLEELFKTCDKK--GTGQIGPEEFRELCTGFDIQPTD-SDAIFADLDHDGDGKVSLEDF 60
L ELFK G I EEF+ + + + +D +F D +G + E+F
Sbjct: 48 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEF 107
Query: 61 AYGFREFLNSDARRLK 76
A F + K
Sbjct: 108 ARALSVFHPNAPIDDK 123
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 42.6 bits (101), Expect = 3e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQ---PTDS--DAIFADLDHDGDGKV 55
+D Q++E+F+ DK +G I EE + + GF D+ A+ A D D DGK+
Sbjct: 38 KTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKI 97
Query: 56 SLEDFA 61
++FA
Sbjct: 98 GADEFA 103
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 46.3 bits (110), Expect = 3e-05
Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 19/151 (12%)
Query: 155 KRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAIL-- 212
++ + K++E N+E + LE++ LE + K+ ++ E E+E
Sbjct: 928 NKIMQLQRKIDEQ-NKEYKSLLEKMNNLEITYSTETEKL--RSDVERLRMSEEEAKNATN 984
Query: 213 -MRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNN 271
+ ++ E +L+ L+ Q ++E + + E E+L L++
Sbjct: 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH----------ETEQLVSELKEQNTL 1034
Query: 272 LDLVHAEMAQLKSEYEGKCQELNQLVGDYLE 302
L E +L + +E+ + + L
Sbjct: 1035 L---KTEKEELNRRIHDQAKEITETMEKKLV 1062
Score = 45.5 bits (108), Expect = 5e-05
Identities = 25/179 (13%), Positives = 69/179 (38%), Gaps = 9/179 (5%)
Query: 154 VKRLHEDNEKLEE---MFNREREVHLE-RLKGLEEELDVQVAKVVTQAKEEARAKYEQEK 209
+ + K+E ++ + LE ++ L+ ++D Q + ++ E E
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY--KSLLEKMNNLEITY 958
Query: 210 AILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTK 269
+ K+ + + L+ + N + + E + H E + ++ +K K
Sbjct: 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018
Query: 270 NNLDLVHAEMAQLKSEYEGKCQELNQLVGDY---LELDQGSDKQFAIQRLMEDIDSGRS 325
+ + + +E+ + + + + +ELN+ + D + ++L D++ R
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Score = 43.2 bits (102), Expect = 3e-04
Identities = 25/167 (14%), Positives = 62/167 (37%), Gaps = 9/167 (5%)
Query: 155 KRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAI--- 211
L E + + R + + L+ + +Q AK E + + +++
Sbjct: 860 MMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERY 919
Query: 212 --LMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHN-FSFENEELKITLE-- 266
L +E++ +LQ ++ K L EK + +++ + E L+++ E
Sbjct: 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979
Query: 267 -KTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFA 312
N + + E+A+L+ E E + + +++ +
Sbjct: 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Score = 34.7 bits (80), Expect = 0.088
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 121 KKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVKRLHEDNEKLEEMFNR------EREV 174
+ L + N V + ++ L ++ + + + +EE ++ +
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 175 HLE----RLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQ 224
L+ LK +EEL+ ++ + E K +E L + E Q
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 43.3 bits (103), Expect = 3e-05
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
++ + F+ DK+G G I E R+L T S + + ++ GDG ++ E F
Sbjct: 77 EMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESF 134
Score = 29.0 bits (66), Expect = 2.2
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 5 QLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLED 59
+++ F+ DK G++ EE PT+++ I L+
Sbjct: 3 SADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEF------- 55
Query: 60 FAYGFREFLNSDARRLKS 77
F + +K+
Sbjct: 56 ---DLATFKTVYRKPIKT 70
Score = 27.9 bits (63), Expect = 5.9
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
++ +L + + K F+ + PT+ F LD +G+G +
Sbjct: 38 PTNAELNTIKGQLNAKE---FDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQ 94
Query: 57 LEDFAY 62
+
Sbjct: 95 EAELRQ 100
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 44.0 bits (104), Expect = 3e-05
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCT------GFDIQPTDS--------DAIFADLDHDG 51
L F D G I EE ++ G P D F +D +
Sbjct: 94 LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK 153
Query: 52 DGKVSLEDF 60
DG V+L++F
Sbjct: 154 DGIVTLDEF 162
Score = 33.6 bits (77), Expect = 0.087
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 5 QLEELFKT-CDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDF 60
+L+ L++ ++ +G + E F+++ F S +F D G V EDF
Sbjct: 19 ELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDF 78
Query: 61 AYGFREFLNSD 71
L
Sbjct: 79 VTALSILLRGT 89
Score = 30.6 bits (69), Expect = 0.84
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
+ LF D TG + E+F + F D + DG ++ E+
Sbjct: 54 ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEE 113
Query: 60 F 60
Sbjct: 114 M 114
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 41.5 bits (98), Expect = 4e-05
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
E +FK D G G+I E + T + + A++D DGDG +S ++F
Sbjct: 12 DRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEF 68
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 41.1 bits (97), Expect = 5e-05
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRE--------LCTGFDIQPTDSDAIFADLDH 49
M+ EL FK D G G + E + D S + D
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 50 DGDGKVSLEDF 60
+ DGK+S E+F
Sbjct: 61 NSDGKISKEEF 71
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 45.3 bits (107), Expect = 5e-05
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+ E F+ DK G G I E R + T + TD D + + D DGDG+V+ E+F
Sbjct: 387 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 443
Score = 40.6 bits (95), Expect = 0.001
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKV 55
+++ Q+ E F DK G G I +E + PT+++ + ++D DG+G +
Sbjct: 306 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 365
Query: 56 SLEDF 60
+F
Sbjct: 366 DFPEF 370
Score = 35.3 bits (81), Expect = 0.054
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVSL 57
++ +L+++ D G G I EF + ++ TDS+ F D DG+G +S
Sbjct: 346 TEAELQDMINEVDADGNGTIDFPEFLTMMARK-MKDTDSEEEIREAFRVFDKDGNGYISA 404
Query: 58 EDFAYGFRE 66
+ +
Sbjct: 405 AELRHVMTN 413
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 41.6 bits (98), Expect = 5e-05
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+E + D G G I + + + T + ++ S DF
Sbjct: 33 GFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDF 90
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 42.9 bits (102), Expect = 5e-05
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIF--ADLDHDGDGKVSLEDF 60
E FKT D++G G I E R + T + +D D I DL D +G V EDF
Sbjct: 86 YMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDF 144
Score = 29.0 bits (66), Expect = 2.3
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 2 SDLQLEEL---FKTCD--KKGTGQIGPEEFRELCTGFDIQPTDSDAI-FADLDHDGDGKV 55
S ++++L F+ D G + + ++C I P + D G+ +
Sbjct: 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSL 63
Query: 56 SLEDF 60
E+F
Sbjct: 64 PFEEF 68
Score = 28.3 bits (64), Expect = 4.4
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 14 DKKGTGQIGPEEFRELCTGFDIQPTDSDA----IFADLDHDGDGKVSLEDFAYGFRE 66
K G + EEF G + A F D +G G +S + +
Sbjct: 56 HKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTA 112
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 43.2 bits (102), Expect = 5e-05
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 3 DLQLEELFKTCDKKGTGQIGPEEFREL---CTGFDIQPTDS--------DAIFADLDHDG 51
D++ F+ D G + E+ L TG S D I + D D
Sbjct: 97 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 156
Query: 52 DGKVSLEDF 60
DG ++L +F
Sbjct: 157 DGTINLSEF 165
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 43.6 bits (103), Expect = 6e-05
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 3 DLQLEELFKTCDKKGTGQIGPEEFRELCT----GFDIQPTDS------DAIFADLDHDGD 52
+++ FK D + TG I EE +E+ ++ ++ D F D D
Sbjct: 110 HEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKND 169
Query: 53 GKVSLEDF 60
GK+ ++++
Sbjct: 170 GKIDIDEW 177
Score = 35.1 bits (81), Expect = 0.035
Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 4 LQLEELFKTCDK--KGTGQIGPEEFRELCTGFDIQPTD-SDAIFADLDHDGDGKVSLEDF 60
L ELFK G I EEF+ + +D IF D +G + +F
Sbjct: 37 EALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFGEF 96
Query: 61 AYGFREFLNSDARRLK 76
F S K
Sbjct: 97 VRSLGVFHPSAPVHEK 112
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 42.5 bits (101), Expect = 6e-05
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT---GFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+L + F+ D G G+I E RE G + D + I D+D +GDG+V E+F
Sbjct: 89 ELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEF 147
Score = 35.6 bits (83), Expect = 0.014
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKV 55
+ ++EEL F+ DK G I + PT+ + + ++ + G V
Sbjct: 5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHV 64
Query: 56 SLEDF 60
+DF
Sbjct: 65 DFDDF 69
Score = 32.9 bits (76), Expect = 0.10
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADL-------DHDGDG 53
++++L EL + + G + ++F EL + T +L D +GDG
Sbjct: 44 PTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDG 103
Query: 54 KVSLEDFAYGFREFL 68
++S + R L
Sbjct: 104 EISTSELREAMRALL 118
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 43.2 bits (102), Expect = 7e-05
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTG-FDIQPTDS------DAIFADLDHDGDGKV 55
+L F+ D +I +E ++ + +D D + D DGD +
Sbjct: 112 SNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAI 171
Query: 56 SLEDF 60
S +F
Sbjct: 172 SFTEF 176
Score = 40.9 bits (96), Expect = 5e-04
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYG 63
+L F + DK G + E+F+ + I P D I +G+ +V+
Sbjct: 29 TRLYSRFTSLDKGENGTLSREDFQRI-PELAINPL-GDRIINAFFSEGEDQVN------- 79
Query: 64 FREFLNSDARRLKSNVNAGAMSSEGPERRNSDVQ 97
FR F+ + A N + GPE NS
Sbjct: 80 FRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSN 113
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 42.1 bits (100), Expect = 7e-05
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+L E FK DK G G I E + + T + TD+ D + ++ DG G+++++ F
Sbjct: 85 ELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQF 141
Score = 34.0 bits (79), Expect = 0.046
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDF 60
+ +E F DK +G I E + + P++++ + ++D DG+ + +F
Sbjct: 12 EFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEF 69
Score = 29.0 bits (66), Expect = 2.1
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
S+ ++ +L D G I EF L + ++ DS+ F D +GDG +S
Sbjct: 44 PSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQ-LKCNDSEQELLEAFKVFDKNGDGLIS 102
Query: 57 LEDFAYGFREF 67
+ +
Sbjct: 103 AAELKHVLTSI 113
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 40.2 bits (95), Expect = 8e-05
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQP-TDS--DAIFADLDHDGDGKVSLEDF 60
++ FK D G G I +EF+ + +P TD+ + + D DG+G + + +F
Sbjct: 9 EILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEF 67
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 42.5 bits (100), Expect = 1e-04
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT--GFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
LF + +G + P E GF I S + L G L +
Sbjct: 118 LAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLH-RLFARGMAFCDLNCW 174
Score = 40.9 bits (96), Expect = 5e-04
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA--IFADLDHDGDGKVSLEDFA 61
++ + F D+ +G + E I+ + A + D D +G +S +F
Sbjct: 52 RIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFM 110
Score = 34.4 bits (79), Expect = 0.064
Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
S + + D G I EF + ++ + +F G + +
Sbjct: 85 SPQTALRMMRIFDTDFNGHISFYEFMAMYK--FME--LAYNLFVMNARARSGTLEPHEIL 140
Query: 62 YGFREF 67
++
Sbjct: 141 PALQQL 146
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 42.7 bits (100), Expect = 1e-04
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCT------GFDIQPTDS--------DAIFADLDHDG 51
L F D G I EE ++ G P D F +D +
Sbjct: 127 LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK 186
Query: 52 DGKVSLEDF 60
DG V+L++F
Sbjct: 187 DGIVTLDEF 195
Score = 30.3 bits (68), Expect = 1.2
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDF 60
L FK G + E F+++ F S +F D G V EDF
Sbjct: 54 QVLYRGFKNECPSGV--VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDF 111
Query: 61 AYGFREFLNSD 71
L
Sbjct: 112 VTALSILLRGT 122
Score = 30.3 bits (68), Expect = 1.3
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
LF D TG + E+F + F D + DG ++ E+
Sbjct: 92 HYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEM 147
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 42.7 bits (100), Expect = 2e-04
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTG-FDIQPTDS-------------DAIFADLDHDG 51
L+ F D G I EE + +D+ + + F +D +
Sbjct: 167 LKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ 226
Query: 52 DGKVSLEDF 60
DG V++++F
Sbjct: 227 DGVVTIDEF 235
Score = 29.2 bits (65), Expect = 3.6
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDFA 61
L FK TG + + F+ + + F Q + +F D DG+G + EDF
Sbjct: 95 SLYRGFKNECP--TGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFV 152
Query: 62 YGFREFLNSD 71
G L
Sbjct: 153 VGLSILLRGT 162
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 41.4 bits (98), Expect = 2e-04
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
E F+ DK+G G++ E R + T + T+ + + A D +G ++ E F
Sbjct: 88 DYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYEAF 144
Score = 33.3 bits (77), Expect = 0.087
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 1 MSDL---QLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAI----FADLDHD 50
M + QLEE F+ D+ G G+I + ++ PT+++ + D
Sbjct: 1 MIEFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEL 60
Query: 51 GDGKVSLEDF 60
+V E F
Sbjct: 61 KSRRVDFETF 70
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 41.4 bits (98), Expect = 2e-04
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGF------DIQPTDS-DAIFADLDHDGDGK 54
+ +L F+ D G I E ++ D Q D + D DGDG+
Sbjct: 73 KEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGR 132
Query: 55 VSLEDFA 61
+S E+F
Sbjct: 133 ISFEEFC 139
Score = 36.8 bits (86), Expect = 0.005
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65
L + FK D +G + EEF L P + D DG+G+V F+
Sbjct: 8 LGKRFKKLDLDNSGSLSVEEFMSL-PELQQNPL-VQRVIDIFDTDGNGEVD-------FK 58
Query: 66 EFLNSDARRLKSN 78
EF+ ++
Sbjct: 59 EFIEGVSQFSVKG 71
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 39.6 bits (93), Expect = 2e-04
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKV 55
++ + +E F+ DK ++ EE + PT I D D D GK
Sbjct: 8 LTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKF 67
Query: 56 SLEDF 60
E F
Sbjct: 68 DQETF 72
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 42.2 bits (99), Expect = 2e-04
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGF-------------DIQPTDS-DAIFADLDHDG 51
L F D G I EE ++ + P + F +D +
Sbjct: 140 LNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNK 199
Query: 52 DGKVSLEDF 60
DG V++++F
Sbjct: 200 DGVVTIDEF 208
Score = 33.7 bits (77), Expect = 0.13
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDFA 61
L FK +G + E F+E+ + F Q + +F D D +G VS EDF
Sbjct: 68 ILYRGFKNECP--SGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFI 125
Query: 62 YGFREFLNSD 71
G L
Sbjct: 126 KGLSILLRGT 135
Score = 27.5 bits (61), Expect = 9.9
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLED 59
S LF D G + E+F + + + F D + DG ++ E+
Sbjct: 100 STTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEE 159
Query: 60 F 60
Sbjct: 160 M 160
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 41.0 bits (97), Expect = 2e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIF--ADLDHDGDGKVSLEDF 60
E FKT D++G G I E R + + T+ + IF D+ D DG + ED
Sbjct: 87 FMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDL 145
Score = 27.9 bits (63), Expect = 6.0
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 1 MSDLQLEEL---FKTCD--KKGTGQIGPEEFRELCTGFDIQPTDSDAI-FADLDHDGDGK 54
++ ++EE+ F D G + + +L + PT++ G+
Sbjct: 3 LTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEKA 62
Query: 55 VSLEDF 60
LE+
Sbjct: 63 YKLEEI 68
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 41.3 bits (97), Expect = 2e-04
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCT------GFDIQPTDS--------DAIFADLDHDG 51
L F+ D G I +E + G ++ + + IF +D +
Sbjct: 101 LIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNK 160
Query: 52 DGKVSLEDF 60
DG+++LE+F
Sbjct: 161 DGQLTLEEF 169
Score = 33.6 bits (77), Expect = 0.085
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 5 QLEELFKTCDKK-GTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDF 60
+L++ +K K +G + EF+++ F S + +F D D +G + ++F
Sbjct: 26 ELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEF 85
Query: 61 AYGFREFLNSD 71
+
Sbjct: 86 ICALSVTSRGE 96
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 5 QLEELFKTCDKKG--TGQIGPEEFRELCTGFDIQPTDS----DAIFADLDHDGDGKVSLE 58
+++ F+ K QI EE + + D + ++D +GDG+VS E
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE 65
Query: 59 DF 60
+F
Sbjct: 66 EF 67
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 41.4 bits (97), Expect = 3e-04
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 3 DLQLEELFKTCDKKGTGQIGPEEFRELCT------GFDIQPTDS--------DAIFADLD 48
D +L FK D G I E ++ G ++ + D IFA +D
Sbjct: 98 DEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMD 157
Query: 49 HDGDGKVSLEDF 60
+ DGK++L++F
Sbjct: 158 KNADGKLTLQEF 169
Score = 30.6 bits (69), Expect = 0.87
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDF 60
Q + F +GQ+ F+++ F + +F D + DG++ +F
Sbjct: 28 QQWYKGFIKDCP--SGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEF 85
Query: 61 AYGFREFLNSD 71
Sbjct: 86 IQALSVTSRGT 96
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 41.4 bits (97), Expect = 3e-04
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 14/69 (20%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCT--------GFDIQPTDS------DAIFADLDHDG 51
L F+ D G I +E + + ++ IF +D +
Sbjct: 101 LSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNE 160
Query: 52 DGKVSLEDF 60
DG ++L++F
Sbjct: 161 DGYITLDEF 169
Score = 33.7 bits (77), Expect = 0.089
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDF 60
Q + F +GQ+ E+F ++ F + + +F D D +G + E+F
Sbjct: 28 QQWHKGFLRDCP--SGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEF 85
Query: 61 AYGFREFLNSD 71
Sbjct: 86 ITVLSTTSRGT 96
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 40.4 bits (95), Expect = 3e-04
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQP-TDS--DAIFADLDHDGDGKVSLEDF 60
L + F I E R I+ + + + D DGDG ++ +F
Sbjct: 42 LCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEF 99
Score = 29.2 bits (66), Expect = 1.6
Identities = 4/60 (6%), Positives = 15/60 (25%), Gaps = 5/60 (8%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDA----IFADLDHDGDGKVSLEDF 60
+ + + E+ + + + + F+ L ++ E
Sbjct: 4 TEKSMLLETTSTTKMETKYEDMLPVMAEK-MDVEEFVSELCKGFSLLADPERHLITAESL 62
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 41.3 bits (97), Expect = 3e-04
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL---CTGFDIQPTD----SDAIFADLDHDGDGKVSL 57
+L F+ D G+I E ++ G + +D + D DGDG VS
Sbjct: 115 KLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSF 174
Query: 58 EDF 60
+F
Sbjct: 175 VEF 177
Score = 39.7 bits (93), Expect = 0.001
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYG 63
L+L F+ D+ G + + +++ + P D I DG +V F
Sbjct: 29 LRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPL-GDRIIESFFPDGSQRVDFPGFVRV 86
Query: 64 FREFLNSDARRLKSNVNAGAMSSEGPE 90
F + ++
Sbjct: 87 LAHFRPVEDEDTETQDPKKPEPLNSRR 113
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 39.8 bits (93), Expect = 3e-04
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+ +LF + DK +G + + R + + +I+ D D DGK++ E+F
Sbjct: 15 KYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFI 71
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 41.1 bits (96), Expect = 4e-04
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 16/76 (21%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS----------------DAIF 44
++ +LE F D G G I E E+ T + I+
Sbjct: 104 KTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIW 163
Query: 45 ADLDHDGDGKVSLEDF 60
+ D K++ ++F
Sbjct: 164 KYFGKNDDDKLTEKEF 179
Score = 31.9 bits (72), Expect = 0.37
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 4 LQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDF 60
+ F TG+I ++F+ + F +F D + DG + +++
Sbjct: 36 CSWYQSFL--KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEY 93
Query: 61 AYGFREFLNSD 71
Sbjct: 94 VIALHMTTAGK 104
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 41.4 bits (97), Expect = 4e-04
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS-------DAIFADLDHDGDGK 54
+ + F+ D+ G G I E L + + GK
Sbjct: 189 CGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGK 248
Query: 55 VSLEDFA 61
+ D A
Sbjct: 249 LYRTDLA 255
Score = 40.2 bits (94), Expect = 0.001
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS----------DAIFADLDHDG 51
S + + ++ D +G I EE + + + D + D +
Sbjct: 101 SCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNN 160
Query: 52 DGKVSLEDFA 61
DGK+ L + A
Sbjct: 161 DGKLELTEMA 170
Score = 37.9 bits (88), Expect = 0.005
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--------AIFADLDHDGDGKVS 56
Q E++ D G+G + +E + L + DGK+
Sbjct: 17 QFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIG 76
Query: 57 LEDFA 61
+ + A
Sbjct: 77 IVELA 81
Score = 32.2 bits (73), Expect = 0.38
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT-------GFDIQPTDSD----AIFADLDHDGDG 53
+++ ++ G+IG E + F Q S + D D G
Sbjct: 59 EMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSG 118
Query: 54 KVSLEDFAYGFREFL 68
+ E+ ++ L
Sbjct: 119 FIETEELKNFLKDLL 133
Score = 29.8 bits (67), Expect = 2.1
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFREL----------CTGFDIQPTDSDAIFADLDHD 50
+ + K D G++ E L G + + + F D D
Sbjct: 144 KLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQD 203
Query: 51 GDGKVSLEDFAYGFRE 66
G+G + + ++
Sbjct: 204 GNGYIDENELDALLKD 219
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 41.0 bits (96), Expect = 4e-04
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCT------GFDIQPTDS--------DAIFADLDHDG 51
L+ F D G G I E E+ ++ + + IF +D +
Sbjct: 101 LKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNR 160
Query: 52 DGKVSLEDF 60
DGK+SLE+F
Sbjct: 161 DGKLSLEEF 169
Score = 35.2 bits (81), Expect = 0.027
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS---DAIFADLDHDGDGKVSLEDFA 61
+ + F +G + EEF+++ F S + +F D +GDG + +F
Sbjct: 29 EWYKGFL--RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFI 86
Query: 62 YGFREFLNSD 71
Sbjct: 87 IALSVTSRGK 96
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 39.9 bits (94), Expect = 4e-04
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+L ++F D TG + + + + T + TD + + + F
Sbjct: 85 ELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALN--AFSSEDNIDYKLF 140
Score = 30.6 bits (70), Expect = 0.63
Identities = 7/63 (11%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 1 MSDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSL 57
+ +++E +K G+I + + P+ D + ++
Sbjct: 9 QLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSID--EKKIKELYGDNLTY 66
Query: 58 EDF 60
E +
Sbjct: 67 EQY 69
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 39.8 bits (94), Expect = 4e-04
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
L + F+T D +GTG I ++ + + + G++ ++F
Sbjct: 81 LRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYDNF 136
Score = 35.9 bits (84), Expect = 0.010
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLEDFAYG 63
+E F+ D + TG I E + + F ++ + +F + D G+GK+ +F
Sbjct: 8 FKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSM 67
Query: 64 FREFLN 69
+
Sbjct: 68 MGRRMK 73
Score = 30.9 bits (71), Expect = 0.43
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----AIFADLDHDGDGKVS 56
+ E+F D G G+I EF + ++ T S+ F D +G G +
Sbjct: 39 VEPAAFNEMFNEADATGNGKIQFPEFLSMMGRR-MKQTTSEDILRQAFRTFDPEGTGYIP 97
Query: 57 LEDF 60
Sbjct: 98 KAAL 101
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 40.6 bits (95), Expect = 6e-04
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 19/74 (25%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCT---------GFDIQPTDS----------DAIFAD 46
L+ FK DK G I +E ++ +++ D IF
Sbjct: 97 LKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLL 156
Query: 47 LDHDGDGKVSLEDF 60
+D +GDG++SL +F
Sbjct: 157 VDENGDGQLSLNEF 170
Score = 36.3 bits (84), Expect = 0.014
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 5 QLEELFKT-CDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFA 61
QL+E +K ++ +G + EF+ D + +A+F D +GD + ++
Sbjct: 23 QLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYV 82
Query: 62 YGFREFLNSD 71
L
Sbjct: 83 AALNLVLRGT 92
Score = 31.3 bits (71), Expect = 0.55
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 8/96 (8%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS-----DAIFADLDHDGDGKVS 56
+ +E +F+ D G I +F E ++ + F D D +G +
Sbjct: 57 ATQYVEAMFRAFDTNGDNTI---DFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCID 113
Query: 57 LEDFAYGFREFLNSDARRLKSNVNAGAMSSEGPERR 92
++ PE
Sbjct: 114 RQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEV 149
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 39.8 bits (94), Expect = 8e-04
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 441 VALQLWDTAGQ------------ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVE 488
+ L + DTAG ER +AD V+ + D T + + + W E
Sbjct: 52 MPLHIIDTAGLREASDEVERIGIER----AWQEIEQADRVLFMVDGTTTDAVDPAEIWPE 107
Query: 489 AVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
+ + +PI + NK D+ + +++ G + S+++G+ +
Sbjct: 108 FIARLPAK-LPITVVRNKADITGET-------------LGMSEVNGHALIRLSARTGEGV 153
Query: 549 LDALIA 554
D L
Sbjct: 154 -DVLRN 158
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 37.8 bits (88), Expect = 8e-04
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
FKT G I +E T + + I+ D D DG ++L++F
Sbjct: 10 YYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFC 66
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 40.0 bits (94), Expect = 9e-04
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAY 62
+ F D+ G G+ E + T + + + D ++ DG+G + ++ FA
Sbjct: 128 IVNAFNLFDE-GDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQ 185
Score = 31.5 bits (72), Expect = 0.49
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 5 QLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
Q++E F+ D+ G I + R T+ + + + G ++ F
Sbjct: 55 QVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELD--SMVAEAPGPINFTMF 111
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 40.2 bits (94), Expect = 9e-04
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 3 DLQLEELFKTCDKKGTGQIGPEEFREL---CTGFDIQPTDS--------DAIFADLDHDG 51
D++ F+ D G + E+ L TG S D I + D D
Sbjct: 128 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 187
Query: 52 DGKVSLEDF 60
DG ++L +F
Sbjct: 188 DGTINLSEF 196
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+ +E+F DK G + E RE+ + T I++ D GK+S + FA
Sbjct: 11 KYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFA 67
Score = 27.4 bits (61), Expect = 5.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 41 DAIFADLDHDGDGKVSLEDFAYGFR 65
D IF D D DG VS + F
Sbjct: 13 DEIFLKTDKDMDGFVSGLEVREIFL 37
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 39.0 bits (92), Expect = 0.001
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAY 62
+ F D++ T ++ E ++L F + +G GK F
Sbjct: 89 IRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYVKFTA 146
Score = 30.6 bits (70), Expect = 0.78
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+++E F D G + E+ + + P D + + + G ++ F
Sbjct: 19 EMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKE--LTAMLKEAPGPLNFTMF 72
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 40.0 bits (93), Expect = 0.001
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELC-----------TGFDIQPTDSDAIFADLDHDGDG 53
E++F D TG + E +G D+ + + D + DG
Sbjct: 197 DFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLD-KFRECLLTHCDMNKDG 255
Query: 54 KVSLEDFA 61
K+ + A
Sbjct: 256 KIQKSELA 263
Score = 40.0 bits (93), Expect = 0.001
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS----------DAIFADLDHDG 51
+ ++ ++++ D +G I E + +Q DA+ D +
Sbjct: 102 NSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNK 161
Query: 52 DGKVSLEDFA 61
DG++ L D A
Sbjct: 162 DGRLDLNDLA 171
Score = 34.3 bits (78), Expect = 0.084
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 16/71 (22%)
Query: 5 QLEELFKTCDKKGTGQIGPEE----FRELCTGFDIQPTDSD----------AIFADLDHD 50
++++ D G I +E FR + +QP D + + D
Sbjct: 12 GFLQIWQHFDADDNGYIEGKELDDFFRHM--LKKLQPKDKITDERVQQIKKSFMSAYDAT 69
Query: 51 GDGKVSLEDFA 61
DG++ +E+ A
Sbjct: 70 FDGRLQIEELA 80
Score = 32.0 bits (72), Expect = 0.51
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 14/82 (17%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFREL--------------CTGFDIQPTDSDAIFAD 46
D + + K DK G++ + + + + D + IFA
Sbjct: 145 KLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAH 204
Query: 47 LDHDGDGKVSLEDFAYGFREFL 68
D G + + ++ +
Sbjct: 205 YDVSRTGALEGPEVDGFVKDMM 226
Score = 30.4 bits (68), Expect = 1.6
Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 13/88 (14%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD-------------AIFADL 47
+ D G++ EE + + I+
Sbjct: 54 RVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKY 113
Query: 48 DHDGDGKVSLEDFAYGFREFLNSDARRL 75
D D G +S + ++ +++
Sbjct: 114 DADSSGYISAAELKNFLKDLFLQHKKKI 141
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 40.5 bits (93), Expect = 0.001
Identities = 20/130 (15%), Positives = 46/130 (35%)
Query: 173 EVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQK 232
E+HLE L + ++ +A + +E + L +
Sbjct: 95 ELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEA 154
Query: 233 VNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQE 292
E++ + + N + L+K ++ ++ ++ + K +YE +E
Sbjct: 155 AKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKE 214
Query: 293 LNQLVGDYLE 302
L+Q Y+E
Sbjct: 215 LDQGTPQYME 224
Score = 31.3 bits (69), Expect = 1.1
Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 4/122 (3%)
Query: 224 QAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKI--TLEKTKNNLDLVHAEMAQ 281
+ HL + + N EK Q++ E + K + E+
Sbjct: 95 ELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEA 154
Query: 282 LKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQRLMEDIDSGRSTMRDCMDCSSDYKSNN 341
K + C+E + ++L + D +D + Y+ +
Sbjct: 155 AKKAHHAACKEEKLAISREANSKADPSLN--PEQLKKLQDKIEKCKQDVLKTKEKYEKSL 212
Query: 342 EE 343
+E
Sbjct: 213 KE 214
Score = 29.4 bits (64), Expect = 4.4
Identities = 29/233 (12%), Positives = 66/233 (28%), Gaps = 8/233 (3%)
Query: 151 LDDVKRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKV--VTQAKEEARAKYEQE 208
++ K+ H K E++ E+L K+ Q + + KYE+
Sbjct: 152 VEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKS 211
Query: 209 KAILMRKMEHETQELQAHLNLFQKVN----NVLKEK--KIEKQQDPTSDHNFSFENEELK 262
L + + ++ Q+ +E +++K D ++ + +L+
Sbjct: 212 LKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLE 271
Query: 263 ITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQRLMEDIDS 322
++ DL Q L + K+ + I+
Sbjct: 272 QSIRAADAVEDLRWFRANHGPGMAMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQ 331
Query: 323 GRSTMRDCMDCSSDYKSNNEENMSSLSEYDYNKRDYPELRRQHSNKSDSQSTP 375
S+ +N + D + S K D+++
Sbjct: 332 TGDQSLPSKPSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKN 384
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 38.7 bits (91), Expect = 0.001
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDFAY 62
L F D+ G G I + ++L + ++ D + + +
Sbjct: 87 LRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVD 144
Score = 29.8 bits (68), Expect = 1.5
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 2 SDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLE 58
S Q++EL F D+ G IG E+ +++ + P D + + + G+++
Sbjct: 11 SQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDE--LNAMLKECPGQLNFT 68
Query: 59 DF 60
F
Sbjct: 69 AF 70
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 37.1 bits (86), Expect = 0.002
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFR 65
E+ ++ + TG++ + + I+ D DG G +S ++F R
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALR 72
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 37.9 bits (89), Expect = 0.002
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
E + DK+G G + E R + + T+ + + + D +G ++ E F
Sbjct: 87 FVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYEAF 142
Score = 29.8 bits (68), Expect = 1.3
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 2 SDLQLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHD--GDGK 54
S ++ F D+ G +I + ++ PT+++ I + +
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAA 62
Query: 55 VSLEDF 60
++ E+F
Sbjct: 63 ITFEEF 68
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.002
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 20/94 (21%)
Query: 154 VKRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILM 213
RL ++ E + + RE +RL+ L+ V + +AK++ +++
Sbjct: 77 ADRLTQEPESIRK----WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS---- 128
Query: 214 RKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQD 247
E E K+NN + +K +Q D
Sbjct: 129 -----EQVEK-------NKINNRIADKAFYQQPD 150
Score = 31.7 bits (71), Expect = 0.45
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 188 VQVAKVVTQAKE------EARAKYEQEKAILMRKMEHETQEL-QAHLNLFQKVNNVLKEK 240
+ A +TQ E E + K QE + ME E +E + L + + + EK
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 241 KIEKQQDPTSDHNFSFENEE 260
+ +D F + +
Sbjct: 134 NKINNRI--ADKAFYQQPDA 151
Score = 30.9 bits (69), Expect = 0.85
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 155 KRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKA 210
KRL E + + M RE + L+ + QV K + +A Y+Q A
Sbjct: 96 KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 37.7 bits (88), Expect = 0.003
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT--GFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+E F T D+ G+G + E R+ G+ + P I + +G++ +D+
Sbjct: 71 AWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIV--KRYSKNGRIFFDDY 126
Score = 32.7 bits (75), Expect = 0.17
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 14 DKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67
D+ TG++G F+EL F +D DG G V +
Sbjct: 50 DRDHTGKMGFNAFKELWA----ALNAWKENFMTVDQDGSGTVEHHELRQAIGLM 99
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 36.3 bits (84), Expect = 0.004
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
F++ + I + T + + I+ D D DG ++L +F
Sbjct: 23 YYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFC 79
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 38.1 bits (89), Expect = 0.004
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 187 DVQV-AKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQ 245
DVQV + + + A E + + + E Q L+A LF ++ VL +E +
Sbjct: 101 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA--GLFSRIRAVLVAGGVEAE 158
Query: 246 Q----DPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYL 301
+ +EE + LE+ D + E + + E K +++ Q GD
Sbjct: 159 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE---FEKKLEAKRRKITQ--GD-- 211
Query: 302 ELDQG 306
+L G
Sbjct: 212 DLAPG 216
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 37.8 bits (88), Expect = 0.005
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT--GFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ F + D +G + P+E ++ T GF + P ++I + +GK++ +D+
Sbjct: 104 GWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIA--KRYSTNGKITFDDY 159
Score = 33.2 bits (76), Expect = 0.14
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 14 DKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67
D+ +G +G EF+EL F D D G V ++
Sbjct: 83 DRDMSGTMGFNEFKELWA----VLNGWRQHFISFDTDRSGTVDPQELQKALTTM 132
Score = 29.0 bits (65), Expect = 3.4
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD-------AIFADLDHDGDGKVSL 57
L F GQI +E + T I + + LD D G +
Sbjct: 34 PLYGYFAA-VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 92
Query: 58 EDFA 61
+F
Sbjct: 93 NEFK 96
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 37.9 bits (89), Expect = 0.007
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 498 IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI---FMETSSKSGDNILDALIA 554
I +IC K+DL D + + A+ Y I TSSK D++ +I
Sbjct: 118 IQPIICITKMDLIEDQD-------TEDTIQAYAEDYRNIGYDVYLTSSKDQDSL-ADIIP 169
Query: 555 -LSRHVYVF 562
VF
Sbjct: 170 HFQDKTTVF 178
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 37.2 bits (87), Expect = 0.007
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 458 TKNY--FRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514
++Y + D V+ + D T ER+ ++ E +++ NK+DL A+
Sbjct: 77 ARDYIINEKPDLVVNIVDATALERNLY-------LTLQLMEMGANLLLALNKMDL---AK 126
Query: 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVY 560
+ G++ ID +KL + G + S+ I + A+S V
Sbjct: 127 SLGIE-IDV---DKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK 168
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 36.6 bits (85), Expect = 0.008
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ F + D +G + P+E ++ T + + GK++ +D+
Sbjct: 73 GWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDY 128
Score = 32.0 bits (73), Expect = 0.31
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 14 DKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67
D+ +G +G EF+EL F D D G V ++
Sbjct: 52 DRDMSGTMGFNEFKELWA----VLNGWRQHFISFDSDRSGTVDPQELQKALTTM 101
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 35.9 bits (84), Expect = 0.009
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS--DAIFADLDHDGDGKVSLEDF 60
+ F+ DK TG IG E R + T + ++ D + + DG V+ DF
Sbjct: 78 FVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDF 133
Score = 34.0 bits (79), Expect = 0.044
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 5 QLEEL---FKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
F D+ GTG+I +L PT ++ +++ +V +E F
Sbjct: 3 DDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE--ITEIESTLPAEVDMEQF 59
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 37.5 bits (88), Expect = 0.009
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 498 IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIF--METSSKSGDNILDALIA- 554
+ V+ NK+DL + D +L + Y ++ ++TS+K+G I + L
Sbjct: 116 LETVMVINKMDLYDED--------DLRKVRELEEIYSGLYPIVKTSAKTGMGI-EELKEY 166
Query: 555 LSRHVYVF 562
L +
Sbjct: 167 LKGKISTM 174
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 36.3 bits (85), Expect = 0.010
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 17/105 (16%)
Query: 458 TKNY--FRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514
++Y + D V+ + D T ER+ ++ E +++ NK+DL A+
Sbjct: 73 ARDYIINEKPDLVVNIVDATALERNLY-------LTLQLMEMGANLLLALNKMDL---AK 122
Query: 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
+ G++ ID +KL + G + S+ I + A+S V
Sbjct: 123 SLGIE-IDV---DKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 38.0 bits (87), Expect = 0.010
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT--GFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ F D+K TG + E+FR G+++ + I + +D + G V+ + F
Sbjct: 726 EFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAF 783
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 37.0 bits (85), Expect = 0.011
Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 24/231 (10%)
Query: 121 KKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLK 180
+ L Y R + + PE + + +L +V E + E + L
Sbjct: 45 RSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQRELVAENLSVR---VCLELT 101
Query: 181 GLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEK 240
+E ++ R + QE Q+L+ + +
Sbjct: 102 KYSQE------------MKQERKMHFQE-------GRRAQQQLENGFKQLENSKRKFERD 142
Query: 241 KIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDY 300
E ++ + + K +EK K L + K+EY + Q N+ +
Sbjct: 143 CREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHF 202
Query: 301 LELDQGSDKQFAIQRLMEDIDSG-RSTMRDCMDCSSDYKSNNEENMSSLSE 350
+Q + E + + + + + + +
Sbjct: 203 YFSQM-PQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKV 252
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 36.1 bits (84), Expect = 0.012
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 451 QERFRSMTKNYFRRA----DGVMLLYDVTNERSFNSVKN---WVEAVEEV----TENSIP 499
QER + ++ D +L+ D + E E IP
Sbjct: 65 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124
Query: 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
++ NK+D + Q V E E + +F+ S+K GDNI + +
Sbjct: 125 TIVAVNKLDKIKNVQE--VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 35.9 bits (83), Expect = 0.014
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCT--GFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ + ++K D +G IG E GF + I D G + ++F
Sbjct: 78 KWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRR-YSDEGGNMDFDNF 134
Score = 30.5 bits (69), Expect = 0.91
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 14 DKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREF 67
D TG++G EEF+ L AI+ D D G + + F
Sbjct: 57 DSDTTGKLGFEEFKYLWN----NIKKWQAIYKQFDVDRSGTIGSSELPGAFEAA 106
Score = 29.7 bits (67), Expect = 1.9
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD----------AIFADLDHDGD 52
Q LF ++ E + + D ++ A +D D
Sbjct: 3 VRQFRRLFAQLAGDD-MEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT 61
Query: 53 GKVSLEDF 60
GK+ E+F
Sbjct: 62 GKLGFEEF 69
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 36.4 bits (85), Expect = 0.019
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 498 IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI---FMETSSKSGDNILDALIA 554
+ VI NK+DL + + K + E+ Y ++ S+K+G+ I D L+
Sbjct: 111 VEPVIVFNKIDLLNEEEKKEL--------ERWISIYRDAGYDVLKVSAKTGEGI-DELVD 161
Query: 555 -LSRHVYVF 562
L + +
Sbjct: 162 YLEGFICIL 170
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 33.5 bits (77), Expect = 0.020
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 19 GQIGPEEFREL----CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
Q+ EE ++L P D +F +LD +GDG+VS F EF
Sbjct: 24 NQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVS-------FEEFQV 71
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 36.5 bits (85), Expect = 0.020
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
Query: 498 IPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAI---FMETSSKSGDNILDALIA 554
+ +I NK+DL D V + Y I + SS + D + L
Sbjct: 161 VEPLIVLNKIDLLDDEGMDFV--------NEQMDIYRNIGYRVLMVSSHTQDGL-KPLEE 211
Query: 555 -LSRHVYVF 562
L+ + +F
Sbjct: 212 ALTGRISIF 220
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 35.3 bits (82), Expect = 0.021
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 44/126 (34%)
Query: 447 DTAGQERFRSMTKNYFRRA----------------DGVMLLYDVTNERSFNSVKNWVEAV 490
DT G E F +M RA DGVM VEA+
Sbjct: 61 DTPGHEAFTTM------RARGAQVTDIVILVVAADDGVM--------------PQTVEAI 100
Query: 491 EEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEK--LAQQYG--AIFMETSSKSGD 546
++PI++ NK+D + +A V +E+ E + +++G IF + S+K+ +
Sbjct: 101 NHAKAANVPIIVAINKMD-KPEANPDRVM---QELMEYNLVPEEWGGDTIFCKLSAKTKE 156
Query: 547 NILDAL 552
+ L
Sbjct: 157 GLDHLL 162
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 36.1 bits (84), Expect = 0.021
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 458 TKNY--FRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514
++Y AD V+L+ D N E+S + E+ E +++ +D A+
Sbjct: 75 ARDYLLKGDADLVILVADSVNPEQSLY-------LLLEILEMEKKVILAMTAIDE---AK 124
Query: 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHVYVFIPCVYLKDLPYT 574
G+K IDR +L + G + TSS +G+ + + L ++ L Y
Sbjct: 125 KTGMK-IDR---YELQKHLGIPVVFTSSVTGEGL-EELKEKIVEYAQKNTILHRMILDYG 179
Query: 575 SVL 577
+
Sbjct: 180 EKV 182
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 36.8 bits (86), Expect = 0.022
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 28/124 (22%)
Query: 441 VALQLWDTAGQ------------ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVE 488
+L DTAG R ++ AD ++ L D+ ER + + E
Sbjct: 281 TMFRLTDTAGLREAGEEIEHEGIRR----SRMKMAEADLILYLLDLGTERLDDELTEIRE 336
Query: 489 AVEEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
+ ANK+D A+A + +A G + S+ +GD I
Sbjct: 337 LKAAHPA--AKFLTVANKLDRAANAD---------ALIRAIADGTGTEVIGISALNGDGI 385
Query: 549 LDAL 552
D L
Sbjct: 386 -DTL 388
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 35.6 bits (81), Expect = 0.034
Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 13/203 (6%)
Query: 154 VKRLHEDNEKLEEM--FNRER-EVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKA 210
VKR+ + + ++ ER + + L + A+ Q E+ EKA
Sbjct: 35 VKRIDDGHRLCSDLMNCLHERARIEKAYAQQLT-----EWARRWRQLVEKGPQYGTVEKA 89
Query: 211 ILMRKMEHETQELQAHLNLFQKVNNVLKE--KKIEKQQDPTSDHNFSFENEELKITLEKT 268
+ E E + + HL + + N E K +K+ E +E + K
Sbjct: 90 WMAFMSEAE-RVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKA 148
Query: 269 KNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQRLMEDIDSGRSTMR 328
+ E+ K + C+E + + ++D
Sbjct: 149 QKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQD- 207
Query: 329 DCMDCSSDYKSNNEENMSSLSEY 351
+ Y+ + +E +Y
Sbjct: 208 -VLKTKEKYEKSLKELDQGTPQY 229
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 36.0 bits (83), Expect = 0.034
Identities = 13/131 (9%), Positives = 49/131 (37%), Gaps = 6/131 (4%)
Query: 204 KYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHN-FSFENEELK 262
Y+ + ++ +E +++ + +++ ++ + + + + ++ ++
Sbjct: 31 TYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKML 90
Query: 263 ITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQRLMEDIDS 322
+ K + ++ + + L+ Y Q++ L +L+ + + DI
Sbjct: 91 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITG 150
Query: 323 GRSTMRDCMDC 333
+DC D
Sbjct: 151 -----KDCQDI 156
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 35.4 bits (81), Expect = 0.037
Identities = 32/231 (13%), Positives = 71/231 (30%), Gaps = 24/231 (10%)
Query: 121 KKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLK 180
+ L+ Y + S E A S L+++ +E + E + + L
Sbjct: 52 RNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQ---IIVDLA 108
Query: 181 GLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEK 240
+EL + ++ + K + K E +A ++
Sbjct: 109 RYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEA-------------DR 155
Query: 241 KIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDY 300
+ + +D N + K +EK + + H K++Y Q+ N +Y
Sbjct: 156 AQQYFEKMDADINVT------KADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEY 209
Query: 301 LELDQGSDKQFAIQRLMEDIDSG-RSTMRDCMDCSSDYKSNNEENMSSLSE 350
+ Q IQ + E +M+ + + + + +
Sbjct: 210 YHTHIPNIFQ-KIQEMEERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIVK 259
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 33.4 bits (76), Expect = 0.039
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 18/76 (23%)
Query: 3 DLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS------------------DAIF 44
+ F D G + +E L T + D + +
Sbjct: 19 RFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVM 78
Query: 45 ADLDHDGDGKVSLEDF 60
++D + D V+LE+F
Sbjct: 79 KNVDTNQDRLVTLEEF 94
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 35.3 bits (82), Expect = 0.039
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 458 TKNY--FRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514
D ++ + D + ER ++ E P+V+ N +D+ A+
Sbjct: 75 AAQSVIDLEYDCIINVIDACHLERHLY-------LTSQLFELGKPVVVALNMMDI---AE 124
Query: 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSG---DNILDALIALSRH 558
+G+ ID EKL G + + + +L+ S+
Sbjct: 125 HRGIS-IDT---EKLESLLGCSVIPIQAHKNIGIPALQQSLLHCSQK 167
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 36.0 bits (82), Expect = 0.039
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 1 MSDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF 60
+ D ++F+ CD T + EE Q + D F + +S+E
Sbjct: 44 VDDGYARKIFRECDHSQTDSLEDEEIETFYKML-TQRAEIDRAFEEA-AGSAETLSVER- 100
Query: 61 AYGFREFLNS 70
FL
Sbjct: 101 ---LVTFLQH 107
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 35.6 bits (82), Expect = 0.041
Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 3/126 (2%)
Query: 162 EKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQ 221
K + E+ + +L G++E + + + +E + E+ + L K E +
Sbjct: 138 AKFLSLKPSEKLETVAKLLGIDEFEKCY--QKMGEIVKEYEKRLERIEGELNYKEE-SLK 194
Query: 222 ELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQ 281
++ +K L + + F+ + + + L+ +E
Sbjct: 195 ARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDL 254
Query: 282 LKSEYE 287
S E
Sbjct: 255 PYSFVE 260
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 35.4 bits (82), Expect = 0.046
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 24/119 (20%)
Query: 447 DTAG-------QERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP 499
DT G + F RAD +L+ D + + V E IP
Sbjct: 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYED------DVVNLFKEMEIP 142
Query: 500 IVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI---LDALIAL 555
V+ NK+D+ + E+ +Y A + S+ + +
Sbjct: 143 FVVVVNKIDVLGEKAE--------ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEI 193
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 35.0 bits (81), Expect = 0.055
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 458 TKNY--FRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514
++Y +RAD ++ + D TN ER+ ++ E IP+ I N +D+
Sbjct: 72 ARDYLLSQRADSILNVVDATNLERNLY-------LTTQLIETGIPVTIALNMIDV---LD 121
Query: 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSG---DNILDALIALSRH 558
+G K I+ +KL+ G + TS+ D ++ +
Sbjct: 122 GQGKK-INV---DKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTTS 164
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 34.6 bits (80), Expect = 0.067
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 458 TKNY--FRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLRADAQ 514
+Y AD ++ + D +N ER+ ++ E IP ++ N +D+ A+
Sbjct: 77 ACHYILSGDADLLINVVDASNLERNLY-------LTLQLLELGIPCIVALNMLDI---AE 126
Query: 515 AKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRH 558
+ ++ I+ + L+ + G + S G I +A+ R+
Sbjct: 127 KQNIR-IEI---DALSARLGCPVIPLVSTRGRGIEALKLAIDRY 166
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 34.9 bits (79), Expect = 0.072
Identities = 35/243 (14%), Positives = 75/243 (30%), Gaps = 14/243 (5%)
Query: 154 VKRLHEDNEKLEEM--FNRER-EVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKA 210
VKR+ + + ++ ER + + L + A+ Q E+ EKA
Sbjct: 35 VKRIDDGHRLCSDLMNCLHERARIEKAYAQQLT-----EWARRWRQLVEKGPQYGTVEKA 89
Query: 211 ILMRKMEHETQELQAHLNLFQKVNNVLKE--KKIEKQQDPTSDHNFSFENEELKITLEKT 268
+ E E + + HL + + N E K +K+ E +E + K
Sbjct: 90 WMAFMSEAE-RVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKA 148
Query: 269 KNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQRLMEDIDSGRSTMR 328
+ E+ K + C+E + + ++D
Sbjct: 149 QKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQD- 207
Query: 329 DCMDCSSDYKSNNEENMSSLSEYDYNKRD-YPELRRQHSNKSDSQSTPLLSLSNSLEPTG 387
+ Y+ + +E +Y N + + ++ + LL + L+ +
Sbjct: 208 -VLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSN 266
Query: 388 EPD 390
Sbjct: 267 VAG 269
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 34.7 bits (79), Expect = 0.083
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 13/134 (9%)
Query: 393 FKIVFAGDAAVGKSCFI----YRFSKEVFLNKLGSTLGVDFQMKTIRVDERNVALQLWDT 448
+ G+ GKS FI ++E K G + + NV WD
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNV--VFWDL 127
Query: 449 AGQERFRSMTKNYFRR---ADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICAN 505
G Y + + + N ++ + ++
Sbjct: 128 PGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKND----IDIAKAISMMKKEFYFVRT 183
Query: 506 KVDLRADAQAKGVK 519
KVD +A G
Sbjct: 184 KVDSDITNEADGEP 197
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 34.5 bits (80), Expect = 0.095
Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 403 VGKSCFIYRFSK-EVFL-NKLGSTLGVDFQMKTIRVDERNVALQLWDTAG---------Q 451
GK+ + + KL +T+ + I ++ R + L DT G
Sbjct: 190 SGKTSLFNSLTGLTQKVDTKLFTTM--SPKRYAIPINNRKIMLV--DTVGFIRGIPPQIV 245
Query: 452 ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTE----NSIPIVICANKV 507
+ F T + + +D ++L+ D T S N + +++ E+ + PI++ NK+
Sbjct: 246 DAFFV-TLSEAKYSDALILVIDSTF--SENLLIETLQSSFEILREIGVSGKPILVTLNKI 302
Query: 508 DLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI---LDALIALSRHVYV 561
D K + +++ E + + I + S+ N+ D + L+ + +
Sbjct: 303 DKINGDLYKKLDLVEKLSKELYSPIFDVIPI--SALKRTNLELLRDKIYQLATQLSL 357
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand,
EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB:
2jxc_A 1f8h_A 1ff1_A
Length = 106
Score = 32.5 bits (74), Expect = 0.096
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+ +F + G + ++ + + + ++ D D DG + ++FA
Sbjct: 18 DAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFA 71
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 34.5 bits (78), Expect = 0.10
Identities = 22/209 (10%), Positives = 59/209 (28%), Gaps = 22/209 (10%)
Query: 121 KKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLK 180
L + E + E+ ++ + + + + +++E + + + L
Sbjct: 472 NDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECY-QSHRDTIVLLC 530
Query: 181 GLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEK 240
E EL+ + + K+ L+ ++ +E + N + VN + K
Sbjct: 531 KPEPELNAAIPSANPAKTMQGSEVVNVLKS-LLSNLDEVKKEREGLENDLKSVNFDMTSK 589
Query: 241 KIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQL------------------ 282
+ + + EL + + L
Sbjct: 590 FLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSN 649
Query: 283 --KSEYEGKCQELNQLVGDYLELDQGSDK 309
+ E + L +++EL +
Sbjct: 650 NEANLREEVLKNLATAYDNFVELVANLKE 678
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 32.2 bits (73), Expect = 0.11
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 24 EEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
++ + + + I DLD + D ++S F EF+
Sbjct: 42 KDLQNFLKKENKNEKVIEHIMEDLDTNADKQLS-------FEEFIM 80
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 31.7 bits (72), Expect = 0.11
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 17/79 (21%)
Query: 1 MSDLQ--LEELFKT----CDKKG-TGQIGPEEFRELCT---GFDIQPTDSDAIFADLDHD 50
+++L+ L + KG + ++ ++L I+ +D F +LD +
Sbjct: 2 LTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDIN 61
Query: 51 GDGKVSLEDFAYGFREFLN 69
DG V+ F+EFL
Sbjct: 62 TDGAVN-------FQEFLI 73
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 33.3 bits (77), Expect = 0.12
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 451 QERFRSMTKNYFRRAD---GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
+E + M + Y + V+ + D+ + S + V+ E + IP+++ A K
Sbjct: 89 REAWGRMIETYITTREELKAVVQIVDLRHAPS----NDDVQMYEFLKYYGIPVIVIATKA 144
Query: 508 D-LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
D + K K V + L + SS++ +A A+ + +
Sbjct: 145 DKIPKGKWDKHAK----VVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 33.5 bits (76), Expect = 0.13
Identities = 3/69 (4%), Positives = 13/69 (18%), Gaps = 5/69 (7%)
Query: 446 WDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTENSIP-----I 500
+ + DG + + + + + + +
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 501 VICANKVDL 509
V+
Sbjct: 167 VLSCISQGD 175
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 33.1 bits (75), Expect = 0.13
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 10/69 (14%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDS----------DAIFADLDHDG 51
D +L F DK G++ EE +E+ S I +LD
Sbjct: 96 FDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTN 155
Query: 52 DGKVSLEDF 60
G + +ED
Sbjct: 156 LGYIEMEDL 164
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 34.1 bits (79), Expect = 0.14
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 37/127 (29%)
Query: 441 VALQLWDTAGQ-------------ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWV 487
+ ++ DTAG ER T +AD V+ + D ++
Sbjct: 291 ILFRIVDTAGVRSETNDLVERLGIER----TLQEIEKADIVLFVLDASSP--------LD 338
Query: 488 EAVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSG 545
E ++ E + ++ NKVD+ + E+ KL + + S+ G
Sbjct: 339 EEDRKILERIKNKRYLVVINKVDVVEKINEE-------EIKNKLGTDRHMV--KISALKG 389
Query: 546 DNILDAL 552
+ + + L
Sbjct: 390 EGL-EKL 395
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 31.7 bits (72), Expect = 0.16
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 18/80 (22%)
Query: 1 MSDLQ--LEELFKT----CDKKG-TGQIGPEEFREL----CTGFDIQPTDSDAIFADLDH 49
+++L+ +E + T ++G + EF+EL D LD
Sbjct: 14 LTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDV 73
Query: 50 DGDGKVSLEDFAYGFREFLN 69
+ D ++ F E+
Sbjct: 74 NQDSELK-------FNEYWR 86
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 31.3 bits (71), Expect = 0.19
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 14 DKKGTGQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66
+ ++ E +EL G + ++LD + D +V F+E
Sbjct: 22 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD-------FQE 74
Query: 67 FLN 69
+
Sbjct: 75 YCV 77
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 33.1 bits (76), Expect = 0.19
Identities = 14/116 (12%), Positives = 35/116 (30%), Gaps = 12/116 (10%)
Query: 451 QERFRSMTKNYFRRAD---GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
+ + + +Y + G++L+ D + + +E PI K
Sbjct: 99 KAHWEQLLSSYLQTRPQLCGMILMMDARRPLT----ELDRRMIEWFAPTGKPIHSLLTKC 154
Query: 508 D-LRADAQAKGVKCIDREVGEKLAQQYGA---IFMETSSKSGDNILDALIALSRHV 559
D L ++ + + Y + + S+ + DA + +
Sbjct: 155 DKLTRQESINALRATQKSLDAYRDAGYAGKLTVQL-FSALKRTGLDDAHALIESWL 209
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 31.3 bits (71), Expect = 0.20
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 14/58 (24%)
Query: 19 GQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
G + E+ R L P D I DLD DGKV F+ F +
Sbjct: 23 GYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVG-------FQSFFS 73
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 30.9 bits (70), Expect = 0.21
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 19 GQIGPEEFREL----CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
+ +E +EL +++ + D + LD + D ++ F+E+
Sbjct: 27 LTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEID-------FKEYSV 74
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 33.4 bits (77), Expect = 0.23
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 6 LEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGK 54
+ + I + I P + + + H DGK
Sbjct: 384 ILNPHIHLMGDESACIAYIRITQYLDAGGI-PRTAQSEETRVWHRRDGK 431
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 32.9 bits (76), Expect = 0.28
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 37/126 (29%)
Query: 441 VALQLWDTAGQ------------ERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVE 488
+ +Q+ DTAG ER ++ AD V+L D W
Sbjct: 272 IPVQVLDTAGIRETSDQVEKIGVER----SRQAANTADLVLLTIDAATG--------WTT 319
Query: 489 AVEEVTE--NSIPIVICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGD 546
+E+ E P+++ NK+DL ++ + + T++
Sbjct: 320 GDQEIYEQVKHRPLILVMNKIDLVEKQLITSLE----------YPENITQIVHTAAAQKQ 369
Query: 547 NILDAL 552
I D+L
Sbjct: 370 GI-DSL 374
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 30.5 bits (69), Expect = 0.31
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
Query: 18 TGQIGPEEFR-----ELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
+ +E + EL G +Q + + DLD + D +V+ F+E++
Sbjct: 26 KHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVN-------FQEYVT 75
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 33.1 bits (75), Expect = 0.32
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 437 DERNVALQLWDTAGQERFRSMTKNYFRRADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN 496
D + + L D+ G F S R DG +++ D + +A+ E
Sbjct: 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE---- 149
Query: 497 SIPIVICANKVDLRADAQAK 516
I V+ NKVD RA + +
Sbjct: 150 RIKPVVVINKVD-RALLELQ 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 32.5 bits (74), Expect = 0.38
Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 395 IVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGVDFQMKTIRV---DERNVALQLWDTAG- 450
+V AG VGKS + + ++ S F + I V ++ Q+ DT G
Sbjct: 170 VVIAGHPNVGKSTLLKALTT--AKPEIASY---PFTTRGINVGQFEDGYFRYQIIDTPGL 224
Query: 451 ----QERFRSMTKNYFR----RADGVMLLYDVTNERSFNSVKNWVEAVEEVTEN--SIPI 500
+ K + ++ ++D + E ++ + EEV +P
Sbjct: 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPS-EHCGFPLEEQIHLFEEVHGEFKDLPF 283
Query: 501 VICANKVDLRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSRHV 559
++ NK+D+ + K ++ K ++ G ++ S+ G I + + +
Sbjct: 284 LVVINKIDVADEENIKRLE--------KFVKEKGLNPIKISALKGTGIDLVKEEIIKTL 334
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 32.6 bits (73), Expect = 0.39
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 6/120 (5%)
Query: 164 LEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYE------QEKAILMRKME 217
+ + + ++ E+ + L + + Q + Q++ L +M
Sbjct: 10 PQPILDTIYKLLSEQEQTLVQMIHEQSLLLNRLPPTLDENSLAPLKSLSQKQITLSGQMN 69
Query: 218 HETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHA 277
E L A L + KQ S + E++ L + A
Sbjct: 70 TEMSALDATKKGMILEPTDLAKLFALKQDLQIQFKQLSLLHNEIQSILNPQHSAPKPNVA 129
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 31.1 bits (70), Expect = 0.41
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 15/80 (18%)
Query: 1 MSDLQLE-ELFKTCDKKGTGQIGPEEFRELCTGF--------DIQPTDS------DAIFA 45
MS +L+ FK D G + E T ++ D +
Sbjct: 64 MSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLR 123
Query: 46 DLDHDGDGKVSLEDFAYGFR 65
D D + DG + +FA +
Sbjct: 124 DDDKNNDGYIDYAEFAKSLQ 143
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 32.6 bits (73), Expect = 0.41
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 3/115 (2%)
Query: 159 EDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVT--QAKEEARAKYEQEKAILMRKM 216
++ +E EV + + + + Q E+ Y++ L KM
Sbjct: 476 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535
Query: 217 EHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNN 271
E++ +L + +E+ +++ S E ++L+ + + K
Sbjct: 536 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR-IMKNEIQDLQTKMRRRKAC 589
Score = 28.4 bits (62), Expect = 8.0
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 152 DDVKRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAI 211
K LHE K E+M ++ + E LK L E+++ +++ + + K ++++ +
Sbjct: 501 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 560
Query: 212 LM----RKMEHETQELQ 224
L ++ E+Q
Sbjct: 561 LKEGFQKESRIMKNEIQ 577
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 32.2 bits (72), Expect = 0.48
Identities = 34/242 (14%), Positives = 75/242 (30%), Gaps = 14/242 (5%)
Query: 154 VKRLHEDNEKLEEM--FNRER-EVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKA 210
VKR+ + + ++ +ER ++ + L AK Q E+ E+A
Sbjct: 26 VKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLT-----DWAKRWRQLIEKGPQYGSLERA 80
Query: 211 ILMRKMEHETQELQAHLNLFQKVNNVLKE--KKIEKQQDPTSDHNFSFENEELKITLEKT 268
E + + + H + + N E K +K E +E + K
Sbjct: 81 WGAMMTEAD-KVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKA 139
Query: 269 KNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQRLMEDIDSGRSTMR 328
+ E+ K Y C+E + + ++ ++ + +D +
Sbjct: 140 QKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKT--EQSVTPEQQKKLVDKVDKCRQ 197
Query: 329 DCMDCSSDYKSNNEENMSSLSEYDYNKRD-YPELRRQHSNKSDSQSTPLLSLSNSLEPTG 387
D Y+ E+ + +Y + + ++ + LL + L
Sbjct: 198 DVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAE 257
Query: 388 EP 389
Sbjct: 258 NS 259
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 30.1 bits (68), Expect = 0.49
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 14 DKKGTGQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66
K + E ++L D IF LD + D +V F+E
Sbjct: 24 RKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVD-------FQE 76
Query: 67 FLN 69
F++
Sbjct: 77 FIS 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.51
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 47/77 (61%)
Query: 308 DKQFAIQRLMEDIDSGRSTMRDCMDCSSDYKSNNEENMSSLSEYDYNKRDYPELRRQHSN 367
+KQ A+++L + +SL Y +
Sbjct: 18 EKQ-ALKKL--------------------------Q--ASLKLYA------DD------- 35
Query: 368 KSDSQSTPLLSLSNSLE 384
S P L++ ++E
Sbjct: 36 -----SAPALAIKATME 47
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 32.1 bits (72), Expect = 0.54
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 7 EELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF-----A 61
+ + D+ G+G++G +EF L T IQ I+ ++D D G ++ +
Sbjct: 578 KIMVDMLDEDGSGKLGLKEFYILWT--KIQ--KYQKIYREIDVDRSGTMNSYEMRKALEE 633
Query: 62 YGFR---EFLNSDARR 74
GF+ + R
Sbjct: 634 AGFKLPCQLHQVIVAR 649
Score = 32.1 bits (72), Expect = 0.54
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAI---FADLDHDGDGKVSLED 59
+ +++++ D +G + E R+ GF + I FA D + + ++
Sbjct: 606 KYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA----DDELIIDFDN 661
Query: 60 F 60
F
Sbjct: 662 F 662
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 30.3 bits (68), Expect = 0.55
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 14 DKKGTGQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66
+ ++ E +EL G + ++LD + D +V F+E
Sbjct: 34 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD-------FQE 86
Query: 67 FLN 69
+
Sbjct: 87 YCV 89
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 31.4 bits (72), Expect = 0.57
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 451 QERFRSMTKNYFRRAD---GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
+ ++ + ++YF+ V LL D + + VE + +IP I K+
Sbjct: 88 RMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ----DSDLMMVEWMKSLNIPFTIVLTKM 143
Query: 508 D-LRADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNI 548
D ++ +AK ++ E + ++ + TSS +G+ I
Sbjct: 144 DKVKMSERAKKLE----EHRKVFSKYGEYTIIPTSSVTGEGI 181
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 29.8 bits (67), Expect = 0.72
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 19 GQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
++ E +EL T + + D + + LD + D +V F E++
Sbjct: 27 YKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVD-------FVEYVR 77
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 31.2 bits (70), Expect = 0.77
Identities = 6/60 (10%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGF 64
L ++ +++ + ++C + + D G++ + F G
Sbjct: 108 CLTTIYDRLEQEHNNLVNVPLCVDMCLNW---------LLNVYDTGRTGRIRVLSFKTGI 158
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 29.8 bits (67), Expect = 0.77
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 14 DKKGTGQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFRE 66
+I FRE+ +D + +LD + DG++S F E
Sbjct: 24 YSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRIS-------FDE 76
Query: 67 FLN 69
+
Sbjct: 77 YWT 79
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 29.4 bits (66), Expect = 0.82
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 19 GQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
++ +E ++L D I +LD +GDG+V F+EF+
Sbjct: 26 YKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVD-------FQEFVV 76
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 29.5 bits (66), Expect = 0.87
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 14/58 (24%)
Query: 19 GQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
++ E +EL G + ++LD + D +V F+E+
Sbjct: 30 FKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVD-------FQEYCV 80
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 31.7 bits (71), Expect = 0.89
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 9 LFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF-----AYG 63
+ D+ G G++G EF L I+ + IF D D G +S + A G
Sbjct: 582 MVNLMDRDGNGKLGLVEFNILWN--RIR--NYLTIFRKFDLDKSGSMSAYEMRMAIEAAG 637
Query: 64 FR---EFLNSDARR 74
F+ + R
Sbjct: 638 FKLPCQLHQVIVAR 651
Score = 30.5 bits (68), Expect = 2.0
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 14 DKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDF-----AYGFR--- 65
D TG++G EEF+ L +I+ I+ + D G + + A GF
Sbjct: 784 DSDTTGKLGFEEFKYLWN--NIK--KWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQ 839
Query: 66 EFLNSDARR 74
+ RR
Sbjct: 840 HIYSMIIRR 848
Score = 30.5 bits (68), Expect = 2.1
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFREL--CTGFDIQPTDSDAI---FADLDHDGDGKVSLED 59
+F+ D +G + E R GF + I FA D + + ++
Sbjct: 608 NYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA----DDELIIDFDN 663
Query: 60 F 60
F
Sbjct: 664 F 664
Score = 29.4 bits (65), Expect = 4.3
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDH---DGDGKVSLEDF 60
+ + ++K + +G IG E + I++ + D G + ++F
Sbjct: 805 KWQGIYKRFETDRSGTIGSNELPGAFEAAGFHL--NQHIYSMIIRRYSDETGNMDFDNF 861
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 29.4 bits (66), Expect = 0.90
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 24 EEFRELCTGFDI-QPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
E F + D +F D + D K+ F EFL+
Sbjct: 37 ENFPNFLSACDKKGTNYLADVFEKKDKNEDKKID-------FSEFLS 76
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 30.5 bits (68), Expect = 0.94
Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 177 ERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNV 236
+ +K E KV Q ++ +Y+Q R + E Q + + F + +
Sbjct: 5 QIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQ-ELQMKRTAIEAFNETIKI 63
Query: 237 LKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQL 296
+E+ + Q+ + ++ F E + +++ N + + + +A++ QEL
Sbjct: 64 FEEQ-GQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQ 122
Query: 297 VGDYLELDQ 305
D E+D+
Sbjct: 123 ASDNREIDK 131
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 31.1 bits (70), Expect = 0.95
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 17/119 (14%)
Query: 452 ERFRSMTKNYFRRADGVMLLYDVTN-ERSFNSVKNWVEAVEEVTENSIPIVICANKVDLR 510
+ F SM V+ + D+ + SF + ++ PI++ NK DL
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFI------PGLPRFAADN-PILLVGNKADL- 110
Query: 511 ADAQAKGVKCIDREVGEKLAQQYGAIFME---TSSKSG---DNILDALIALSRHVYVFI 563
K K + ++A++ G ++ S+ G +++A+ V++
Sbjct: 111 LPRSVKYPKLLRWM--RRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYV 167
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 29.4 bits (66), Expect = 0.98
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 21/83 (25%)
Query: 1 MSDLQ--LEELFKT----CDKKG-TGQIGPEEFREL-------CTGFDIQPTDSDAIFAD 46
M++L+ + + +G T + E + L D + D
Sbjct: 1 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKD 60
Query: 47 LDHDGDGKVSLEDFAYGFREFLN 69
LD +GD +V F EF+
Sbjct: 61 LDANGDAQVD-------FSEFIV 76
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 29.4 bits (66), Expect = 1.0
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 14/58 (24%)
Query: 19 GQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
++ E +EL G + + LD + D +V F+E+
Sbjct: 28 FKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVD-------FQEYAV 78
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.7 bits (69), Expect = 1.1
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 16/144 (11%)
Query: 361 LRRQHSNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYR-FSKEVFLN 419
+ H + S ++ EP + +IV G GKS ++VF +
Sbjct: 1 MHHHHHHSSGRENLYFQGGPGRQEPR---NSQLRIVLVGKTGAGKSATGNSILGRKVFHS 57
Query: 420 KLGSTLG-VDFQMKTIRVDERNVALQLWDTAG--------QERFRSMTKNYFRRADGV-M 469
+ + ++ E + + DT G E + + + + G
Sbjct: 58 GTAAKSITKKCEKRSSSWKETELV--VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHA 115
Query: 470 LLYDVTNERSFNSVKNWVEAVEEV 493
LL V R E + ++
Sbjct: 116 LLLVVPLGRYTEEEHKATEKILKM 139
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 30.5 bits (68), Expect = 1.2
Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 2/128 (1%)
Query: 165 EEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQ 224
EE + R + ++ + + + E + +K+E + +
Sbjct: 92 EEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRI 151
Query: 225 AHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHAEMAQLKS 284
+ + K E + + L + + L+ AE +
Sbjct: 152 QVMMRSTSDKAAQERLKKEINNSHIQE--VVQTIKLLTEKTARYQQKLEEKQAENLRAIQ 209
Query: 285 EYEGKCQE 292
E EG+ Q+
Sbjct: 210 EKEGQLQQ 217
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 30.8 bits (69), Expect = 1.2
Identities = 29/213 (13%), Positives = 74/213 (34%), Gaps = 7/213 (3%)
Query: 144 EGALSSLLDDVKRLHEDNEKLEEMFNREREVHLERLKGLEEELD-----VQVAKVVTQAK 198
E AL + ++ +++ + + ++LK E+ELD ++ A+ +
Sbjct: 16 ENALDRADEAEADKKAAEDRSKQLEDELVSLQ-KKLKATEDELDKYSEALKDAQEKLELA 74
Query: 199 EEARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFEN 258
E+ E + A L R+++ +EL L+E + +
Sbjct: 75 EKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRA 134
Query: 259 EELKITLEKTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLEL-DQGSDKQFAIQRLM 317
++ + +E + L +YE ++L + D ++ + L
Sbjct: 135 QKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELE 194
Query: 318 EDIDSGRSTMRDCMDCSSDYKSNNEENMSSLSE 350
E+I + + ++ + Y ++ +
Sbjct: 195 EEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKV 227
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 30.3 bits (69), Expect = 1.2
Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 451 QERFRSMTKNYFRRAD---GVMLLYDVTNERSFNSVKNWVEAVEEVTENSIPIVICANKV 507
+ +++ Y + G+++L D+ + + +E +++I +++ K
Sbjct: 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK----DLDQQMIEWAVDSNIAVLVLLTKA 147
Query: 508 D-LRADAQAKGVKCIDREVGEKLAQQYGAIFME-TSSKSGDNILDALIALSR 557
D L + A+ + V E + G + +E SS + L
Sbjct: 148 DKLASGARKAQLN----MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma
protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1
PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Length = 191
Score = 30.1 bits (67), Expect = 1.3
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 120 GKKLADLYHELRTSSNCPEIVTHFEGALSSLLDDV-KRLHEDNEKLEEMFNREREVHLER 178
++L L E + E L+ + ++ RL ++ + + + E R
Sbjct: 57 TQELRALMDETMKELK--AYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGR 114
Query: 179 LKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHL 227
L E+ ++ Q+ EE R + L +++ + +LQ L
Sbjct: 115 LVQYRGEV----QAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 28.6 bits (64), Expect = 1.6
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 21/83 (25%)
Query: 1 MSDLQ-----LEELFKTCDKK--GTGQIGPEEFREL-------CTGFDIQPTDSDAIFAD 46
MS+L+ L ++F + ++ E +EL + D +
Sbjct: 1 MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET 60
Query: 47 LDHDGDGKVSLEDFAYGFREFLN 69
LD +GDG+ F+EF+
Sbjct: 61 LDSNGDGECD-------FQEFMA 76
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A
{Homo sapiens} PDB: 3tdz_A
Length = 200
Score = 30.0 bits (67), Expect = 1.6
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 2 SDLQLEELFKT-CDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFA--DLDHDGDGKVSLE 58
S +LE+L+ D + +IG + ++ C + P + + S +
Sbjct: 2 SRKKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQ 61
Query: 59 DFAYGFREFLNSDARRLKS 77
+F G E +LK+
Sbjct: 62 EFMDGMTELGCDSIEKLKA 80
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 29.3 bits (65), Expect = 1.7
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 157 LHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKM 216
L E +KLE R + E LK L E+ + +V+ +A EE + K L +KM
Sbjct: 45 LEEIQKKLEAAEERRKYQEAELLKHLAEKRE-HEREVIQKAIEENNNFIKMAKEKLAQKM 103
Query: 217 EHETQELQAHLN-----LFQKVNNVLKEKKIEKQQDPTS 250
E + +AHL L +K + + +K ++ ++ S
Sbjct: 104 ESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEAS 142
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 30.2 bits (67), Expect = 2.0
Identities = 24/205 (11%), Positives = 60/205 (29%), Gaps = 17/205 (8%)
Query: 154 VKRLHEDNEKLEEM--FNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQ---E 208
V+R+ + + ++ +ER +E+ Q+A + + + E
Sbjct: 26 VQRVEDGHRLCGDLVSCFQERAR-------IEKAYAQQLADWARKWRGAVEKGPQYGTLE 78
Query: 209 KAILMRKMEHETQELQAHLNLFQKVNNVLKE--KKIEKQQDPTSDHNFSFENEELKITLE 266
KA E + + HL + +K++ E + ++ + +
Sbjct: 79 KAWHAFFTAAE-RLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFR 137
Query: 267 KTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQRLMEDIDSGRST 326
K + E+ K Y ++ S ++L + +
Sbjct: 138 KAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMS--QEQLRKLQERVGRC 195
Query: 327 MRDCMDCSSDYKSNNEENMSSLSEY 351
++ + Y+ E Y
Sbjct: 196 TKEAEKMKTQYEQTLAELNRYTPRY 220
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 29.8 bits (66), Expect = 2.1
Identities = 8/86 (9%), Positives = 31/86 (36%)
Query: 212 LMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNN 271
+ E + L ++ + +++ Q+ E +E +
Sbjct: 132 FIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVY 191
Query: 272 LDLVHAEMAQLKSEYEGKCQELNQLV 297
+ ++ ++++++ EYE + + +
Sbjct: 192 VAQLYHQVSKIEWEYECEPGMVKGIH 217
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 28.7 bits (64), Expect = 2.3
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 5 QLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSDAIFADLDHDGDGKVSLEDFA 61
+ ++ F + +G I ++ R + I+A D + DG++ +F+
Sbjct: 34 KHDQQFHSLKP-ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFS 89
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 28.3 bits (63), Expect = 2.5
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 14/58 (24%)
Query: 19 GQIGPEEFREL-------CTGFDIQPTDSDAIFADLDHDGDGKVSLEDFAYGFREFLN 69
++ E +EL P + I DLD + D +V F EF+
Sbjct: 27 YKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVD-------FNEFVV 77
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime
disease; NMR {Homo sapiens}
Length = 307
Score = 29.8 bits (66), Expect = 2.7
Identities = 23/205 (11%), Positives = 62/205 (30%), Gaps = 13/205 (6%)
Query: 109 EANVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVK-RLHEDNEKLEEM 167
+ + + ++L + E R + + + L + ++DV RL + +++ M
Sbjct: 76 MKELKAYKSELEEQLTPVAEETRA--RLSKELQAAQARLGADMEDVCGRLVQYRGEVQAM 133
Query: 168 FNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHL 227
+ E RL +L ++ + ++ + R + + L +
Sbjct: 134 LGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLV 193
Query: 228 N-LFQKVNNVLKE---------KKIEKQQDPTSDHNFSFENEELKITLEKTKNNLDLVHA 277
+ V + ++ + S + L E+ +
Sbjct: 194 EQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEE 253
Query: 278 EMAQLKSEYEGKCQELNQLVGDYLE 302
+ Q++ + E L E
Sbjct: 254 QAQQIRLQAEAAQARLKSRFEPLAE 278
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.4 bits (65), Expect = 2.9
Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 18/205 (8%)
Query: 154 VKRLHEDNEKLEEM--FNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQ---E 208
KR+ + + ++ +ER +E+ + + E E E
Sbjct: 14 TKRIEDGYKLCNDLQQLIQERAD-------IEKGYAKSLRTWSKKWGELIEKGPEYGTTE 66
Query: 209 KAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENE--ELKITLE 266
A E E + H+ + + N + +I+ Q H E +L+ +
Sbjct: 67 AAWKGVLTESE-RISDVHMKIKDNLCNDV-NSQIKTWQKENYHHTLMQIKERKDLEDLFK 124
Query: 267 KTKNNLDLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQGSDKQFAIQRLMEDIDSGRST 326
K + + A++ + K++Y C+ + S + M D
Sbjct: 125 KAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTK- 183
Query: 327 MRDCMDCSSDYKSNNEENMSSLSEY 351
C Y+ E S Y
Sbjct: 184 -DQVQKCREKYEQAIAEITKYNSVY 207
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 29.9 bits (68), Expect = 3.1
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 21/82 (25%)
Query: 487 VEAVEEVTENSIPIVICANKVDL-RADAQAKGVKCIDREVGEKLAQQ------YG--AIF 537
VE+++ + +PIV+ NK D AD ++ V ++L YG
Sbjct: 94 VESIQHAKDAHVPIVLAINKCDKAEAD--------PEK-VKKELLAYDVVCEDYGGDVQA 144
Query: 538 METSSKSGDNI---LDALIALS 556
+ S+ +G+N+ +A IAL+
Sbjct: 145 VHVSALTGENMMALAEATIALA 166
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 29.4 bits (65), Expect = 3.2
Identities = 17/153 (11%), Positives = 53/153 (34%), Gaps = 11/153 (7%)
Query: 155 KRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMR 214
++L + ++ + N+ R L++++ + + + R + Q ++
Sbjct: 88 EKLQDTMARISALGNKIRA-DLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSL--- 143
Query: 215 KMEHETQELQAHLNLFQKV--NNVLKEKKIEKQQDPTSDHNFSFENEELKITLEKTKNNL 272
+++ + + V N + + +Q + + S + + I
Sbjct: 144 -----SRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFS 198
Query: 273 DLVHAEMAQLKSEYEGKCQELNQLVGDYLELDQ 305
+ +E + +++ QL LEL +
Sbjct: 199 GMRLEGAEAKLNEIRDRHKDIQQLERSLLELHE 231
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 29.4 bits (67), Expect = 3.3
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 45/127 (35%)
Query: 447 DTAGQERFRSMTKNYFRRA----------------DGVMLLYDVTNERSFNSVKNWVEAV 490
DT G F SM RA DGVM T +EA+
Sbjct: 57 DTPGHAAFTSM------RARGAQATDIVVLVVAADDGVM---PQT-----------IEAI 96
Query: 491 EEVTENSIPIVICANKVDLRADAQAKGVKCIDREVGEK--LAQQYG--AIFMETSSKSGD 546
+ +P+V+ NK+D + +A VK E+ + L +++G + F+ S+K+G
Sbjct: 97 QHAKAAQVPVVVAVNKID-KPEADPDRVK---NELSQYGILPEEWGGESQFVHVSAKAGT 152
Query: 547 NILDALI 553
I D L+
Sbjct: 153 GI-DELL 158
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 27.5 bits (61), Expect = 4.0
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 21/83 (25%)
Query: 1 MSDLQ--LEELFKT-----CDKKGTGQIGPEEFREL-------CTGFDIQPTDSDAIFAD 46
++ + +E L +I EF T P D +
Sbjct: 5 PTETERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKK 64
Query: 47 LDHDGDGKVSLEDFAYGFREFLN 69
LD D DG++ F+EFLN
Sbjct: 65 LDLDSDGQLD-------FQEFLN 80
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 29.1 bits (65), Expect = 4.2
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 381 NSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTLGV 427
+ AF++ +G GKS FI F K L + G L V
Sbjct: 63 EQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKM--LTERGHKLSV 107
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin,
neddylation, DCN-1, center for eukaryotic structural
genomics, PSI; HET: CSO MSE; 1.30A {Galdieria
sulphuraria}
Length = 199
Score = 28.4 bits (63), Expect = 4.7
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 2 SDLQLEELFKTCDKKGTGQIGPEEFRELCTGFDIQPTDSD--AIFADLDHDGDGKVSLED 59
+ ELF+T + IG E + L + P+D + L + S ++
Sbjct: 5 DKKAILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTCEFSEKE 64
Query: 60 FAYGFREFLNSDARRLKS 77
F G +LK
Sbjct: 65 FVEGLANLQVDSLEKLKR 82
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 28.5 bits (63), Expect = 4.9
Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 9/152 (5%)
Query: 147 LSSLLDDVKRLHEDNEKLEEMFN---REREVHLERLKGLEEELDVQVAKVVTQAKE--EA 201
SSL ++ E + K ++ F E E + LE EL+ Q+ + + ++
Sbjct: 5 FSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD 64
Query: 202 RAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKK--IEKQQDPTSDHNFSFENE 259
+ + E L K+EH+ + +++ + + + K + K N E
Sbjct: 65 NQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124
Query: 260 E--LKITLEKTKNNLDLVHAEMAQLKSEYEGK 289
+ ++LE + L+ A L+SE + K
Sbjct: 125 KRATIMSLEDFEQRLNQAIERNAFLESELDEK 156
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma,
lipid binding protein; 1.7A {Homo sapiens} SCOP:
a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Length = 165
Score = 28.2 bits (62), Expect = 5.1
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 120 GKKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVK-RLHEDNEKLEEMFNREREVHLER 178
++L L E + E L+ + ++ + RL ++ + + + E R
Sbjct: 57 TQELRALMDETMKELK--AYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGR 114
Query: 179 LKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHL 227
L E+ ++ Q+ EE R + L +++ + +LQ L
Sbjct: 115 LVQYRGEV----QAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 28.7 bits (64), Expect = 5.2
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 366 SNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL 425
S + D + L L +G A ++ G VGKS I L + G +
Sbjct: 56 STRPDHREQAQQLLLRLLPDSG---NAHRVGITGVPGVGKSTAIEALGMH--LIERGHRV 110
Query: 426 GV 427
V
Sbjct: 111 AV 112
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 28.3 bits (63), Expect = 5.8
Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 163 KLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQE 222
KLE + ++E E ++ L +E + + V +A+E+A+A + + L + +
Sbjct: 2 KLEAILSQEVE---AEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRR 58
Query: 223 LQAHLNLFQKVNNVLKEKKIEKQQD 247
++ L + + + + +
Sbjct: 59 AESAGELL------VATARTQARGE 77
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 28.2 bits (63), Expect = 5.9
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 499 PIVICANKVDL-RADAQAKGVKCIDREVGEKLAQQYGAIFMETSSKSGDNILDALIALSR 557
IVI NK+D D+ + K + +++ + + S+ +G + A I
Sbjct: 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF--STLTGVGVEQAKITACE 201
Query: 558 HV 559
+
Sbjct: 202 LL 203
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 28.8 bits (65), Expect = 6.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 482 SVKNWVEAVEEVTENSIPIVICA 504
SV+ +E + T + IP+ C
Sbjct: 313 SVREVIEVARKTTGHPIPVRECG 335
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 28.6 bits (65), Expect = 6.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 482 SVKNWVEAVEEVTENSIPIVICA 504
SVK V+AV EVT + IP +
Sbjct: 259 SVKEIVDAVREVTNHEIPAEVAP 281
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 27.5 bits (61), Expect = 6.6
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 188 VQVAKVVTQAKE--EARAKYEQEKAILMRKMEHETQELQAHLNLFQKVNNVLKEKKIEKQ 245
V + + Q + E E +++ +LQA + Q + K+EK
Sbjct: 9 VNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKD 68
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger,
transcription activator; 3.00A {Escherichia coli} SCOP:
e.64.1.1
Length = 192
Score = 27.7 bits (61), Expect = 7.7
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 300 YLEL--DQGSDKQFAIQR---LMEDIDSGRSTMRDCMDCSSDYKSNNEENMSS 347
YLE A+ R L+ ++SG + C C ++ ++ + + S
Sbjct: 102 YLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGS 154
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
STR initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Length = 291
Score = 28.0 bits (63), Expect = 8.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 169 NREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKA 210
N E HLE+ + ++ + +VV QA +E + E+
Sbjct: 240 NIEFLAHLEKTDSPQNDVPTSIKEVVAQAHKEFKKNEEERSF 281
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 28.0 bits (61), Expect = 8.5
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 155 KRLHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMR 214
+RL E ++ EE+ R E + +K +E+L A+ + KE + + + L
Sbjct: 118 ERLQEKDKHAEEVRQRAIEENNNWIKMAKEKL----AQKMESNKENRKYQEAELLKHLAE 173
Query: 215 KMEHETQELQAHLNLFQKVNNVLKEKKIEKQQ 246
K EHE + +Q + + KEK +K +
Sbjct: 174 KREHEREVIQRAIEENNNWIKMAKEKLAQKME 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 28.2 bits (63), Expect = 8.9
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 366 SNKSDSQSTPLLSLSNSLEPTGEPDRAFKIVFAGDAAVGKSCFIYRFSKEVFLNKLGSTL 425
S Q+ L + G ++ G GKS F+ F L + G +
Sbjct: 33 SRHPRHQALSTQLLDAIMPYCG---NTLRLGVTGTPGAGKSTFLEAFGML--LIREGLKV 87
Query: 426 GV 427
V
Sbjct: 88 AV 89
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal
toxic shock S; 3.30A {Streptococcus pyogenes}
Length = 146
Score = 27.1 bits (59), Expect = 9.1
Identities = 14/106 (13%), Positives = 39/106 (36%)
Query: 157 LHEDNEKLEEMFNREREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKM 216
+ + +E+ ++ + L + + + + K++A + + +
Sbjct: 2 VWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRA 61
Query: 217 EHETQELQAHLNLFQKVNNVLKEKKIEKQQDPTSDHNFSFENEELK 262
+EL+A + N+L K+E Q + + E +L+
Sbjct: 62 NVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLE 107
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high
density lipop (HDL), lipid binding, plasma, lipid
transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Length = 185
Score = 27.7 bits (61), Expect = 9.2
Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 111 NVHKFLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVK-RLHEDNEKLEEMFN 169
+V + ++L + E N + +S L++VK ++ + ++ +
Sbjct: 53 SVTSTFSKLREQLGPVTQEFW--DNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQ 110
Query: 170 REREVHLERLKGLEEELDVQVAKVVTQAKEEARAKYEQEKAILMRKMEHETQELQAHL 227
E E++ ++++ L EL + + E + K + + L+ HL
Sbjct: 111 EEMELYRQKVEPLRAELQEGARQKL----HELQEKLSPLGEEMRDRARAHVDALRTHL 164
Score = 27.4 bits (60), Expect = 9.7
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Query: 115 FLNTSGKKLADLYHELRTSSNCPEIVTHFEGALSSLLDDVKRLHED----NEKLEEMFNR 170
+++ D + S+ ++ S+ +L E ++ + +
Sbjct: 19 YVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEK 78
Query: 171 EREVHLERLKGLEEELDVQVA-------KVVTQAKEEARAKYEQEKAILMRKMEHETQEL 223
E E + + EE+ +V K + E R K E +A L + EL
Sbjct: 79 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHEL 138
Query: 224 QAHLN 228
Q L+
Sbjct: 139 QEKLS 143
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative,
BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB:
3p0d_A
Length = 88
Score = 26.1 bits (58), Expect = 9.2
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 34 DIQPTDSDAIFADLDHDGDGKVSLEDFAY 62
P+ AD++ DG+V+ D
Sbjct: 48 STLPSSKAEKNADVN--RDGRVNSSDVTI 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.371
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,847,175
Number of extensions: 538220
Number of successful extensions: 2713
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2129
Number of HSP's successfully gapped: 669
Length of query: 593
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 494
Effective length of database: 3,937,614
Effective search space: 1945181316
Effective search space used: 1945181316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)