BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8074
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 94 FVRHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSD 153
++ +I + ++V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICSD
Sbjct: 322 WLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSD 381
Query: 154 KTGTLTTNRMTVVQSYICEVL--SKTTPKFSSLPSNVGNLIVQAISINSAYTSRIMPPDE 211
KTGTLT NRMTV + + + TT S + + A+S +A +R +
Sbjct: 382 KTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAG 441
Query: 212 PTELP----KQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVI 267
+P G+ +E ALL + + Q RD P+ + + N + S+
Sbjct: 442 QDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENE 501
Query: 268 PRQGGGYRLFTKGASE 283
Y L KGA E
Sbjct: 502 KSSESRYLLVMKGAPE 517
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Query: 94 FVRHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSD 153
F+R ++ + ++V VPEGL VT+ L+ + K++ N +V++L+A ET+G+ + ICSD
Sbjct: 327 FLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSD 386
Query: 154 KTGTLTTNRMTVVQSYICEVL--SKTTPKFSSLPSNVGNLIVQAISINSAYTSR--IMPP 209
KTGTLT NRMTV + + + TT S + + +A+ +R
Sbjct: 387 KTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSG 446
Query: 210 DEPTELPKQ--VGNKTECALLGFV-LALGKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTV 266
+ +PK+ +G+ +E ALL F L LG N +R+ P+ + N + S+ T+
Sbjct: 447 QDAVPVPKRIVIGDASETALLKFSELTLG-NAMGYRERFPKVCEIPFNSTNKFQLSIHTL 505
Query: 267 IPRQGGGYRLFTKGASE 283
+ + L KGA E
Sbjct: 506 EDPRDPRHVLVMKGAPE 522
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%)
Query: 94 FVRHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSD 153
++ +I + ++V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICSD
Sbjct: 292 WLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSD 351
Query: 154 KTGTLTTNRMTVVQSY 169
KTGTLT NRMTV +
Sbjct: 352 KTGTLTQNRMTVAHMW 367
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 44/215 (20%)
Query: 110 PEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSY 169
PEGLP +T LA ++M K N +VR L + ET+G + ICSDKTGTLTTN+M+V + +
Sbjct: 309 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 368
Query: 170 ICEVLSKTTPKFSSL---------------------PSNVGNL--IVQAISINSAYTSRI 206
I + K F SL P G +V+ +I +
Sbjct: 369 I---IDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSS 425
Query: 207 MPPDEPTELPKQVGNKTECALLGFVLALGKNYQTWR-----------DDIPEEMLTRVYT 255
+ +E + ++VG TE AL V + R + + +++ + +T
Sbjct: 426 LDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT 485
Query: 256 --FNSVRKSMSTVI-----PRQGGGYRLFTKGASE 283
F+ RKSMS R G ++F KGA E
Sbjct: 486 LEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPE 520
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 44/215 (20%)
Query: 110 PEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSY 169
PEGLP +T LA ++M K N +VR L + ET+G + ICSDKTGTLTTN+M+V + +
Sbjct: 308 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 367
Query: 170 ICEVLSKTTPKFSSL---------------------PSNVGNL--IVQAISINSAYTSRI 206
I + K F SL P G +V+ +I +
Sbjct: 368 I---IDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSS 424
Query: 207 MPPDEPTELPKQVGNKTECALLGFVLALGKNYQTWR-----------DDIPEEMLTRVYT 255
+ +E + ++VG TE AL V + R + + +++ + +T
Sbjct: 425 LDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT 484
Query: 256 --FNSVRKSMSTVI-----PRQGGGYRLFTKGASE 283
F+ RKSMS R G ++F KGA E
Sbjct: 485 LEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPE 519
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 37/211 (17%)
Query: 110 PEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSY 169
PEGLP +T LA ++M K N +VR L + ET+G + ICSDKTGTLTTN+M+V + +
Sbjct: 308 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 367
Query: 170 ICEVL--------------SKTTPKFSSL----PSNVGNL--IVQAISINSAYTSRIMPP 209
I + + S P+ L P G +V+ +I + +
Sbjct: 368 IIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICALCNDSSLDF 427
Query: 210 DEPTELPKQVGNKTECALLGFVLALGKNYQTWR-----------DDIPEEMLTRVYT--F 256
+E + ++VG TE AL V + R + + +++ + +T F
Sbjct: 428 NETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEF 487
Query: 257 NSVRKSMSTVI----PRQGGGYRLFTKGASE 283
+ RKSMS R G ++F KGA E
Sbjct: 488 SRDRKSMSVYCSPAKSRAAVGNKMFVKGAPE 518
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 94 FVRHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSD 153
++ +I + ++V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICS
Sbjct: 286 WLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSX 345
Query: 154 KTGTLTTNRMTVVQSY 169
KTGTLT NRMTV +
Sbjct: 346 KTGTLTQNRMTVAHMW 361
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 44/215 (20%)
Query: 110 PEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSY 169
PEGLP +T LA ++M K N +VR L + ET+G + ICS KTGTLTTN+M+V + +
Sbjct: 308 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMF 367
Query: 170 ICEVLSKTTPKFSSL---------------------PSNVGNL--IVQAISINSAYTSRI 206
I + K F SL P G +V+ +I +
Sbjct: 368 I---IDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSS 424
Query: 207 MPPDEPTELPKQVGNKTECALLGFVLALGKNYQTWR-----------DDIPEEMLTRVYT 255
+ +E + ++VG TE AL V + R + + +++ + +T
Sbjct: 425 LDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT 484
Query: 256 --FNSVRKSMSTVI-----PRQGGGYRLFTKGASE 283
F+ RKSMS R G ++F KGA E
Sbjct: 485 LEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPE 519
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 86 WKNTY--ANEFVRHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACET 143
W +++ +N V+ L + + ++ VP GLP VT ++A + K +V+ L A E+
Sbjct: 309 WVSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIES 368
Query: 144 MGNATAICSDKTGTLTTNRMTVVQSY 169
+ +CSDKTGTLT N++++ Y
Sbjct: 369 LAGVEILCSDKTGTLTKNKLSLHDPY 394
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 102 VTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTN 161
+ +L+ +P +P +++++A ++ + + + + A E M +CSDKTGTLT N
Sbjct: 278 LVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLN 337
Query: 162 RMTVVQSYICEVLSKTTPK-----FSSLPSNVGNLIVQAISINSAYTSRIMPPDE 211
+++V ++ + EV K K F+++ S V N +I++A + P E
Sbjct: 338 KLSVDKN-LVEVFCKGVEKDQVLLFAAMASRVEN----QDAIDAAMVGMLADPKE 387
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 98 LIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 157
LI V+VL++A P L LA +S+ V K + L+++ +A E M + DKTGT
Sbjct: 371 LIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGT 430
Query: 158 LT 159
LT
Sbjct: 431 LT 432
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 102 VTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTN 161
+ VLVVA P LA +L + K + L+++ DA E TA+ DKTGTLT
Sbjct: 281 IAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKG 340
Query: 162 R 162
+
Sbjct: 341 K 341
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 102 VTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTN 161
+ VLVVA P LA +L + K + L+++ DA E TA+ DKTGTLT
Sbjct: 359 IAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKG 418
Query: 162 R 162
+
Sbjct: 419 K 419
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 110 PEGLPLAVTLSLAYSVKKMMKDNNLVRHL 138
PEGLP +T LA ++M K N +VR L
Sbjct: 20 PEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|2PV3|A Chain A, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
pdb|2PV3|B Chain B, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
Length = 299
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 19/69 (27%)
Query: 235 GKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVIPRQGGGYRLFTKGASEIPPDEPTELPK 294
G NY T+R+ I +EM+ N VR+ ++ I P E L +
Sbjct: 102 GLNYNTYRNQIRKEMIISEVRNNEVRRRIT-------------------ILPQEVESLAQ 142
Query: 295 QVGNKTECA 303
QVGN+ + +
Sbjct: 143 QVGNQNDAS 151
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 312 GKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVIPRQ 347
G NY T+R+ I +EM+ N VR+ + T++P++
Sbjct: 102 GLNYNTYRNQIRKEMIISEVRNNEVRRRI-TILPQE 136
>pdb|1GEN|A Chain A, C-Terminal Domain Of Gelatinase A
Length = 218
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 332 TFNSVRKSMSTVIPRQGGGYRLFTKGASEIVLKNYGNICRVQSLK 376
+N++ ++ V+ QGGG+ F KGA + L+N QSLK
Sbjct: 167 AWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLEN-------QSLK 204
>pdb|1RTG|A Chain A, C-terminal Domain (haemopexin-like Domain) Of Human Matrix
Metalloproteinase-2
Length = 210
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 332 TFNSVRKSMSTVIPRQGGGYRLFTKGASEIVLKNYGNICRVQSLK 376
+N++ ++ V+ QGGG+ F KGA + L+N QSLK
Sbjct: 159 AWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLEN-------QSLK 196
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 333 FNSVRKSMSTVIPRQGGGYRLFTKGASEIVLKNYGNICRVQSLK 376
+N++ ++ V+ QGGG+ F KGA + L+N QSLK
Sbjct: 581 WNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLEN-------QSLK 617
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 134 LVRHLDACETMGNATAICSDKTGTLTTNR 162
L+++ DA E TA+ DKTGTLT +
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGK 47
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 134 LVRHLDACETMGNATAICSDKTGTLTTNR 162
L+++ DA E TA+ DKTGTLT +
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGK 47
>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
Length = 408
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 19/69 (27%)
Query: 235 GKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVIPRQGGGYRLFTKGASEIPPDEPTELPK 294
G NY T+R+ I +EM+ N VR+ ++ I P E L +
Sbjct: 102 GLNYNTYRNQIRKEMIISEVRNNEVRRRIT-------------------ILPQEVESLAQ 142
Query: 295 QVGNKTECA 303
QVGN+ + +
Sbjct: 143 QVGNQNDAS 151
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 312 GKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVIPRQ 347
G NY T+R+ I +EM+ N VR+ + T++P++
Sbjct: 102 GLNYNTYRNQIRKEMIISEVRNNEVRRRI-TILPQE 136
>pdb|3VN4|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
Human Adamts13 (P475s Mutant)
Length = 410
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 117 VTLSLAYSVKKMMKDNNLVRH--LDACETMGNATAICSDKTGTLTTNR-------MTVVQ 167
++L ++ S + D + D C+ G + CS + G+ T R +TV
Sbjct: 235 LSLCVSGSCRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTP 294
Query: 168 SYICEVLSKTTPKFSSLPSNVGNLIVQA----ISINSAYTS 204
+ ++ P F+ L +G V A IS N+ Y S
Sbjct: 295 NLTSVYIANHRPLFTHLAVRIGGRYVVAGKMSISPNTTYPS 335
>pdb|3GHN|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
Human Adamts13 (Form-2)
Length = 419
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 139 DACETMGNATAICSDKTGTLTTNR-------MTVVQSYICEVLSKTTPKFSSLPSNVGNL 191
D C+ G + CS + G+ T R +TV + ++ P F+ L +G
Sbjct: 259 DRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTPNLTSVYIANHRPLFTHLAVRIGGR 318
Query: 192 IVQA----ISINSAYTS 204
V A IS N+ Y S
Sbjct: 319 YVVAGKMSISPNTTYPS 335
>pdb|3GHM|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
Human Adamts13 (Form-1)
Length = 410
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 139 DACETMGNATAICSDKTGTLTTNR-------MTVVQSYICEVLSKTTPKFSSLPSNVGNL 191
D C+ G + CS + G+ T R +TV + ++ P F+ L +G
Sbjct: 259 DRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTPNLTSVYIANHRPLFTHLAVRIGGR 318
Query: 192 IVQA----ISINSAYTS 204
V A IS N+ Y S
Sbjct: 319 YVVAGKMSISPNTTYPS 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,868,576
Number of Sequences: 62578
Number of extensions: 426294
Number of successful extensions: 870
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 31
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)