RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8074
(376 letters)
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 158 bits (401), Expect = 1e-42
Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 37/260 (14%)
Query: 38 KKEKSVLQAKLTKLAIQIGYAGSTIAVLTVVILVIQFCVKTFVIEDKSWKNTYANEFVRH 97
+ EK+ + ++ I ++ + ++
Sbjct: 288 ENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCI---------GYTFLRA-------- 330
Query: 98 LIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 157
++ + ++V VPEGL VT+ L+ + K++ N +V++L+A ET+G+ + ICSDKTGT
Sbjct: 331 MVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGT 390
Query: 158 LTTNRMTVV------QSYICEVLSKTTPKFSSLPSNVGNLIVQAISINSAYTSRIMPPDE 211
LT NRMTV + + + + S + + +++ + + +
Sbjct: 391 LTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNR--AAFKSGQD 448
Query: 212 --PTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYT--FNSVRKSMSTV- 266
P +G+ +E ALL F N +R+ P +V FNS K ++
Sbjct: 449 AVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFP-----KVCEIPFNSTNKFQLSIH 503
Query: 267 --IPRQGGGYRLFTKGASEI 284
+ + L KGA E
Sbjct: 504 TLEDPRDPRHVLVMKGAPER 523
Score = 56.5 bits (137), Expect = 8e-09
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 287 DEPTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYT--FNSVRKSMSTV- 343
P +G+ +E ALL F N +R+ P +V FNS K ++
Sbjct: 449 AVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFP-----KVCEIPFNSTNKFQLSIH 503
Query: 344 --IPRQGGGYRLFTKGASEIVLK 364
+ + L KGA E VL+
Sbjct: 504 TLEDPRDPRHVLVMKGAPERVLE 526
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 155 bits (393), Expect = 1e-41
Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 39/261 (14%)
Query: 38 KKEKSVLQAKLTKLAIQIGYAGSTIAVLTVVILVIQFCVKTFVIEDKSWKNTYANEFVRH 97
+ ++ + ++ I + V ++ +I SW
Sbjct: 283 EVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLIL---------GYSWLEA-------- 325
Query: 98 LIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 157
+I + ++V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICSDKTGT
Sbjct: 326 VIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGT 385
Query: 158 LTTNRMTVVQSYICE-------VLSKTTPKFSSLPSNVGNLIVQAISINSAYTSRIMPPD 210
LT NRMTV + +++ F + L A N A
Sbjct: 386 LTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRA---VFQAGQ 442
Query: 211 E--PTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYT--FNSVRKSMSTV 266
+ P G+ +E ALL + + Q RD P ++ FNS K ++
Sbjct: 443 DNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNP-----KIVEIPFNSTNKYQLSI 497
Query: 267 I---PRQGGGYRLFTKGASEI 284
Y L KGA E
Sbjct: 498 HENEKSSESRYLLVMKGAPER 518
Score = 54.6 bits (132), Expect = 3e-08
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 287 DEPTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYT--FNSVRKSMSTVI 344
+ P G+ +E ALL + + Q RD P ++ FNS K ++
Sbjct: 444 NVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNP-----KIVEIPFNSTNKYQLSIH 498
Query: 345 ---PRQGGGYRLFTKGASEIVLK 364
Y L KGA E +L
Sbjct: 499 ENEKSSESRYLLVMKGAPERILD 521
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 151 bits (383), Expect = 2e-40
Identities = 73/285 (25%), Positives = 121/285 (42%), Gaps = 45/285 (15%)
Query: 38 KKEKSVLQAKLTKLAIQIGYAGSTIAVLTVVILVIQFCVKTFVIEDKSWKNTYANEFVRH 97
+++K+ LQ KL + Q+ S I V +I + F D ++ + +
Sbjct: 244 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF-------NDPVHGGSWIRGAIYY 296
Query: 98 LIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 157
I V + V A+PEGLP +T LA ++M K N +VR L + ET+G + ICSDKTGT
Sbjct: 297 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGT 356
Query: 158 LTTNRMTVVQSYICEVLSKTTPKFSSLP------SNVGNLIVQAISINSAYTSRIMP--- 208
LTTN+M+V + +I + + + + G ++ I S ++
Sbjct: 357 LTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELAT 416
Query: 209 -----------PDEPTELPKQVGNKTECALLGFVLALG-----------KNYQTWRDDIP 246
+E + ++VG TE AL V + + +
Sbjct: 417 ICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 476
Query: 247 EEMLTRVYT--FNSVRKSMSTVI-----PRQGGGYRLFTKGASEI 284
+++ + +T F+ RKSMS R G ++F KGA E
Sbjct: 477 RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEG 521
Score = 51.1 bits (123), Expect = 4e-07
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 18/101 (17%)
Query: 282 SEIPPDEPTELPKQVGNKTECALLGFVLALG-----------KNYQTWRDDIPEEMLTRV 330
S + +E + ++VG TE AL V + + + +++ +
Sbjct: 424 SSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKE 483
Query: 331 YT--FNSVRKSMSTVI-----PRQGGGYRLFTKGASEIVLK 364
+T F+ RKSMS R G ++F KGA E V+
Sbjct: 484 FTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVID 524
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 133 bits (337), Expect = 2e-34
Identities = 40/249 (16%), Positives = 92/249 (36%), Gaps = 52/249 (20%)
Query: 38 KKEKSVLQAKLTKLAIQIGYAGSTIAVLTVVILVIQFCVKTFVIEDKSWKNTYANEFVRH 97
+ Q LT + G+ + +VI+ V + I+ + +++
Sbjct: 230 TNQVGHFQKVLTAI-------GNFCICSIAIGMVIEIIV-MYPIQRRKYRDG-------- 273
Query: 98 LIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 157
+ + +L+ +P +P +++++A ++ + + + + A E M +CSDKTGT
Sbjct: 274 IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGT 333
Query: 158 LTTNRMTVVQSYICEVLSKTTPKFSSLPSNVGNLIVQAISINSAYTSRIMPPDEPTELPK 217
LT N+++V ++ + + ++ ++ S
Sbjct: 334 LTLNKLSVDKNLVEVFCKGVEK----------DQVLLFAAMASRV--------------- 368
Query: 218 QVGNKTECALLGFVLALGKNYQTWR--DDIPEEMLTRVYTFNSVRKSMSTVIPRQGGGYR 275
+ + + A++G + + R +P FN V K + G +
Sbjct: 369 ENQDAIDAAMVGMLADPKEARAGIREVHFLP---------FNPVDKRTALTYIDGSGNWH 419
Query: 276 LFTKGASEI 284
+KGA E
Sbjct: 420 RVSKGAPEQ 428
Score = 51.5 bits (124), Expect = 2e-07
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 295 QVGNKTECALLGFVLALGKNYQTWR--DDIPEEMLTRVYTFNSVRKSMSTVIPRQGGGYR 352
+ + + A++G + + R +P FN V K + G +
Sbjct: 369 ENQDAIDAAMVGMLADPKEARAGIREVHFLP---------FNPVDKRTALTYIDGSGNWH 419
Query: 353 LFTKGASEIVLK 364
+KGA E +L+
Sbjct: 420 RVSKGAPEQILE 431
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 128 bits (324), Expect = 1e-32
Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 47/247 (19%)
Query: 38 KKEKSVLQAKLTKLAIQIGYAGSTIAVLTVVILVIQFCVKTFVIEDKSWKNTYANEFVRH 97
L + G+ + +L + L+I +
Sbjct: 280 SGGSGHFTEVLNGI-------GTILLILVIFTLLIVWVSS--FYRSNPIVQI-------- 322
Query: 98 LIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 157
L + + ++ VP GLP VT ++A + K +V+ L A E++ +CSDKTGT
Sbjct: 323 LEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGT 382
Query: 158 LTTNRMTVVQSYICEVLSKTTPKFSSLPSNVGNLIVQAISINSAYTSRIMPPDEPTELPK 217
LT N++++ Y + ++ + ++ K
Sbjct: 383 LTKNKLSLHDPYTVAGVDP-------------EDLMLTACLAASRK-------------K 416
Query: 218 QVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVIPRQGGGYRLF 277
+ + + A L + K Y + + + + + + F+ V K + V+ G
Sbjct: 417 KGIDAIDKAFLKSL----KYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITC 472
Query: 278 TKGASEI 284
KGA
Sbjct: 473 VKGAPLF 479
Score = 48.5 bits (116), Expect = 3e-06
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 294 KQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVIPRQGGGYRL 353
K+ + + A L + K Y + + + + + + F+ V K + V+ G
Sbjct: 416 KKGIDAIDKAFLKSL----KYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERIT 471
Query: 354 FTKGASEIVLK 364
KGA VLK
Sbjct: 472 CVKGAPLFVLK 482
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 56.1 bits (136), Expect = 1e-09
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 296 VGNKTECALLGFVLALGKNY--QTWR--DDIPEEMLTRVYTFNSVRKSMSTVIPRQGGGY 351
+ N + A+L W+ D+IP F+ R+ MS V+ +
Sbjct: 32 LKNLLDTAVLEGTDEESARSLASRWQKIDEIP---------FDFERRRMSVVVAENTEHH 82
Query: 352 RLFTKGASEIVLK 364
+L KGA + +L
Sbjct: 83 QLVCKGALQEILN 95
Score = 51.4 bits (124), Expect = 4e-08
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 219 VGNKTECALLGFVLALGKNY--QTWR--DDIPEEMLTRVYTFNSVRKSMSTVIPRQGGGY 274
+ N + A+L W+ D+IP F+ R+ MS V+ +
Sbjct: 32 LKNLLDTAVLEGTDEESARSLASRWQKIDEIP---------FDFERRRMSVVVAENTEHH 82
Query: 275 RLFTKGASE 283
+L KGA +
Sbjct: 83 QLVCKGALQ 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 3e-08
Identities = 56/320 (17%), Positives = 101/320 (31%), Gaps = 121/320 (37%)
Query: 58 AGSTIAVLTVVILVIQFCVKTFVIEDKSWKNTYAN--EFVRHL-IIGV----TVLVVAVP 110
G+T +V + E SW++ + + + + L IGV ++P
Sbjct: 268 KGATGHSQGLV-------TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 111 -----------EGLP---LAVT-LSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKT 155
EG+P L+++ L+ V+ + N HL A G I
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQE-QVQDYVNKTN--SHLPA----GKQVEI----- 368
Query: 156 GTLTTN--RMTVV------------------------QSYICEVLSKTTPKFSS--LPSN 187
+L N + VV QS I S+ KFS+ LP
Sbjct: 369 -SLV-NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI--PFSERKLKFSNRFLP-- 422
Query: 188 VGNLIVQAISINSAYTSRIMPPDEPTELPKQVGNKTECALLGFVLAL-------GKNYQT 240
+ S + S ++ P ++L + K + + + G + +
Sbjct: 423 ----------VASPFHSHLLVP--ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 241 WRDDIPE---EMLTR--VYTFNSVRKSMSTVI---P-------------RQGGGYRLFTK 279
I E + + R V + + + ++ P + G G R+
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 280 GASEIPPDEPTELPKQVGNK 299
G +I PD+ G K
Sbjct: 531 GTLDINPDD------DYGFK 544
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 46.0 bits (110), Expect = 2e-05
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 68 VILVIQFCVKTFVIEDKSWKNTYANEFVRHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKK 127
+ V+ + F+ W + + VLVVA P LA +L + K
Sbjct: 251 IPTVLLVAISAFIY----WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGK 306
Query: 128 MMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVV 166
+ L+++ DA E TA+ DKTGTLT + V
Sbjct: 307 GAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT 345
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 46.0 bits (110), Expect = 2e-05
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 71 VIQFCVKTFVIEDKSWKNTYANEFVRHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMK 130
V+ + F+ W + + VLVVA P LA +L + K +
Sbjct: 332 VLLVAISAFIY----WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAE 387
Query: 131 DNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVV 166
L+++ DA E TA+ DKTGTLT + V
Sbjct: 388 LGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT 423
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 42.5 bits (101), Expect = 2e-04
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 68 VILVIQFCVKTFVIEDKSWKNT-YANEFVRHLIIGVTVLVVAVPEGLPLAVTLSLAYSVK 126
V VI V +F++ W LI V+VL++A P L LA +S+ V
Sbjct: 344 VPAVILVAVLSFIV----WALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVG 399
Query: 127 KMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVV 166
K + L+++ +A E M + DKTGTLT +
Sbjct: 400 KGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLT 439
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 51/384 (13%), Positives = 104/384 (27%), Gaps = 126/384 (32%)
Query: 29 EKPDREDDHKKEKSVLQAKLTKLAIQIGYAGSTIAVLTVVIL-------VIQ-F---CVK 77
+ D + K +QA+L +L Y + +L F C K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL------VLLNVQNAKAWNAFNLSC-K 267
Query: 78 TFVI-EDKSWKN-----TYANEFVRHLIIGVT----------VLVVAV---PE----GLP 114
+ K + T + + H + +T L P P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 115 LAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSYI-CEV 173
+++ +A S++ + + +H++ C+ + + L + + V
Sbjct: 328 RRLSI-IAESIRDGLATWDNWKHVN-CDKLTTIIESSLNV---LEPAEYR--KMFDRLSV 380
Query: 174 LSKTTPKFSSLPSNV-----GNLIVQ----------------------AISINSAYTSRI 206
P + +P+ + ++I ISI S Y
Sbjct: 381 F----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 207 MPPDEPTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTV 266
+ + L + + + + K + + D IP + Y ++ +
Sbjct: 437 VKLENEYALHRSIVDH---------YNIPKTFDSD-DLIPPYL--DQYFYSHI------- 477
Query: 267 IPRQGGGYRLFTKGASEIPPDEPTELPKQ------VGNK-----TECALLGFVLALG--- 312
G+ L E T + K T G +L
Sbjct: 478 ------GHHLKNIEHPE----RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 313 ---KNYQTWRDDIPEEMLTRVYTF 333
K Y D E ++ + F
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDF 551
Score = 36.8 bits (84), Expect = 0.014
Identities = 60/372 (16%), Positives = 112/372 (30%), Gaps = 110/372 (29%)
Query: 9 TGNSHLANIPVVHEEREPAAEKPDREDDHKKEKSVLQAKLTKLAIQIGYAGSTIAVLTVV 68
TG ++ + + D +D KS+L + I A S L
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 69 ILVIQF-CVKTFVIE----DKSW-KNTYANEF------VRHLIIGVTVLVVAVPEGLPLA 116
+L Q V+ FV E + + + E R I L
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 117 VT-----LSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSYIC 171
V+ L L ++ ++ N++ + S KT + + V SY
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLID-----GVLG-----SGKT-WVALD---VCLSY-- 174
Query: 172 EVLSK-------------TTPKFSSLPSNVGNLIVQAISINSAYTSRIMPPDEPTELPKQ 218
+V K +P+ ++ + L+ Q I+ +TSR D + + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPE--TVLEMLQKLLYQ---IDPNWTSR---SDHSSNIKLR 226
Query: 219 VGNKTECALLGFVLALGKNYQTWR-----DDI--PEE-----------MLTR---VYTF- 256
+ + + L + + K Y+ ++ + + TR V F
Sbjct: 227 I-HSIQAELRRLLKS--KPYE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 257 NSVRKSMSTVIPRQGGGYRLFTKGASEIPPDEPTELPKQVGNKTECALLGFVLALGKNYQ 316
++ + ++ T PDE L + L Q
Sbjct: 282 SAATTTHISLDHHSMT----LT-------PDEVKSL--------------LLKYLDCRPQ 316
Query: 317 TWRDDIPEEMLT 328
D+P E+LT
Sbjct: 317 ----DLPREVLT 324
Score = 34.8 bits (79), Expect = 0.052
Identities = 50/362 (13%), Positives = 101/362 (27%), Gaps = 132/362 (36%)
Query: 33 REDDHKKEKSVLQAKLTK---LAIQIGYAGSTIAVLTVVIL-----VIQFCVKTFVIEDK 84
R + K + L +L + I G GS + + + + K F
Sbjct: 133 RLQPYLKLRQALL-ELRPAKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIF----- 185
Query: 85 SWKN-TYANEFVRHLIIGVTVLVVAVPEGLPLA--------VTLSLAYSVKKMMKDNNLV 135
W N N L + +L P + S+ +++++K
Sbjct: 186 -WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 136 RHL----DACETMGNATAICSDKTGTLTTNRMTVVQSY-I-CEVLSKTTPKFSSLPSNVG 189
L + + ++ + C++L TT +F + +
Sbjct: 245 NCLLVLLNVQ-----------NAK---------AWNAFNLSCKILL-TT-RFKQVTDFLS 282
Query: 190 NLIVQAISINSAYTSRIMPPDEPTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEM 249
IS++ S + PDE L + L Q D+P E+
Sbjct: 283 AATTTHISLDH--HSMTLTPDEVKSL--------------LLKYLDCRPQ----DLPREV 322
Query: 250 LT-----------------------RVYTFNSVRKSMSTVI----P---RQGGGYRLFTK 279
LT + + + + + + P R+ + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLS- 379
Query: 280 GASEI-PPDEPTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYTFNSVRK 338
+ PP +P +L+L W D I +++ V +
Sbjct: 380 ----VFPPSAH--IPTI------------LLSL-----IWFDVIKSDVMVVVNKL--HKY 414
Query: 339 SM 340
S+
Sbjct: 415 SL 416
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 37.0 bits (87), Expect = 0.006
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 134 LVRHLDACETMGNATAICSDKTGTLTTNRMTVVQ 167
++++ + E + I +KTGTLT V Q
Sbjct: 15 IIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQ 48
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 36.7 bits (86), Expect = 0.009
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 134 LVRHLDACETMGNATAICSDKTGTLTTNRMTVV 166
L+++ DA E TA+ DKTGTLT + V
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT 51
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 34.4 bits (80), Expect = 0.048
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 135 VRHLDACETMGNATAICSDKTGTLTTNRMTVV 166
+R A E + A+ DKTGTLT R V
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVT 32
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.42
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 22 EEREPAAEKPDREDDHKKEKSVLQAK 47
EE+ ++ D +++ +AK
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAK 117
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 28.0 bits (62), Expect = 4.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 11 NSHLANIPVVHEEREPAAEKPDREDDHKKEKSVLQAKLTKL 51
S +I ++ E+E KP+ E KK+ S + K KL
Sbjct: 140 MSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.383
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,512,212
Number of extensions: 315942
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 28
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)