RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8074
(376 letters)
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 96.3 bits (239), Expect = 1e-22
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 33 REDDHKKEKSVLQAKLTKLAIQIGYAGSTIAVLTVVILVIQFCVKTFVIEDKSWKNTYAN 92
+++K+ LQ KL + Q+ S I V +I + F + SW
Sbjct: 123 EPAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF---NDPVHGGSWIRG--- 176
Query: 93 EFVRHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICS 152
+ + I V + V A+PEGLP +T LA ++M K N +VR L + ET+G A
Sbjct: 177 -AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNM 235
Query: 153 DK--TGTLTTNRMTVVQSYICEVLSKTTP 179
+ +++N VV ++ L
Sbjct: 236 KQFIRYLISSNVGEVVCIFLTAALGLPEA 264
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 74.1 bits (181), Expect = 3e-15
Identities = 23/195 (11%), Positives = 53/195 (27%), Gaps = 21/195 (10%)
Query: 134 LVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSYICEVLSKTTPKFSSLPSNVGNLIV 193
+ L +G + I + + ++L+K K L SN +++
Sbjct: 26 VYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKL--KSLGLNSNW-DMLF 82
Query: 194 QAISINSAYTSRIMPPDEPTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRV 253
SI+ + K++ + A + + Q ++ +
Sbjct: 83 IVFSIHLID------------ILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLN- 129
Query: 254 YTFNSVRKSMSTVIPRQGGGYRLFTKGASEIPPDEPTELPKQVGNKTECALLGF-VLALG 312
+ + V + Y + A+ L G A + LG
Sbjct: 130 --EQLPLQFLDNVKVGKNNIYAALEEFATTELHVSDATLFSLKGALWTLAQEVYQEWYLG 187
Query: 313 KNYQTWRDDIPEEML 327
+ + D +
Sbjct: 188 --SKLYEDVEKKIAR 200
Score = 37.9 bits (87), Expect = 0.001
Identities = 6/78 (7%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 292 LPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVIPRQGGGY 351
+ K++ + A + + Q ++ + + + V + Y
Sbjct: 92 ILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLN---EQLPLQFLDNVKVGKNNIY 148
Query: 352 RLFTKGASEIVLKNYGNI 369
+ A+ + + +
Sbjct: 149 AALEEFATTELHVSDATL 166
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 64.5 bits (156), Expect = 1e-12
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 11/130 (8%)
Query: 163 MTVVQSYICE--VLSKTTPKFSSLPSNVGN----LIVQAISINSAYTSRIMPPDEPTELP 216
MTV + + TT S + + + + + + + +
Sbjct: 2 MTVAHMWFDNQIHEADTTEDQSGATFDKRSPTWTALSRIAGLCNRAVFKAGQENISVSKR 61
Query: 217 KQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVI--PRQGGGY 274
G+ +E ALL + + + RD P +FNS K ++ +
Sbjct: 62 DTAGDASESALLKCIELSCGSVRKMRDRNP---KVAEISFNSTNKYQLSIHEREDNPQSH 118
Query: 275 RLFTKGASEI 284
L KGA E
Sbjct: 119 VLVMKGAPER 128
Score = 59.5 bits (143), Expect = 6e-11
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 287 DEPTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTRVYTFNSVRKSMSTVI-- 344
+ G+ +E ALL + + + RD P +FNS K ++
Sbjct: 55 NISVSKRDTAGDASESALLKCIELSCGSVRKMRDRNP---KVAEISFNSTNKYQLSIHER 111
Query: 345 PRQGGGYRLFTKGASEIVLK 364
+ L KGA E +L
Sbjct: 112 EDNPQSHVLVMKGAPERILD 131
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 46.8 bits (110), Expect = 1e-06
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 282 SEIPPDEPTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTR------------ 329
S + +E + ++VG TE AL V + R+ E
Sbjct: 63 SSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKE 122
Query: 330 -VYTFNSVRKSMSTVIPRQGGG-----YRLFTKGASEIVLK 364
F+ RKSMS ++F KGA E V+
Sbjct: 123 FTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVID 163
Score = 41.4 bits (96), Expect = 8e-05
Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 18/94 (19%)
Query: 209 PDEPTELPKQVGNKTECALLGFVLALGKNYQTWRDDIPEEMLTR-------------VYT 255
+E + ++VG TE AL V + R+ E
Sbjct: 67 FNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLE 126
Query: 256 FNSVRKSMSTVIPRQGGG-----YRLFTKGASEI 284
F+ RKSMS ++F KGA E
Sbjct: 127 FSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEG 160
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 29.4 bits (66), Expect = 0.21
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 147 ATAICSDKTGTLTTNRMTVVQSYICEVLSKTTPKFSSLPSNVGNLIVQAISINSAYTSRI 206
AI LT N I ++K P + + N I +S+N +
Sbjct: 13 VQAITMAPDKQLTLNG-------IYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVP 65
Query: 207 MPPDEP 212
+EP
Sbjct: 66 RSQEEP 71
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 28.6 bits (64), Expect = 0.37
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 161 NRMTVVQSYICEVLSKTTPKFSSLPSNVGNLIVQAISINSAYTSRIMPPDEP 212
++T+ I + + P + N I +S+N + +P
Sbjct: 23 KKITLNG--IYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKP 72
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 28.3 bits (63), Expect = 0.47
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 147 ATAICSDKTGTLTTNRMTVVQSYICEVLSKTTPKFSSLPSNVGNLIVQAISINSAYTSRI 206
AI LT + ICE +S P + N I +S+N +
Sbjct: 12 TMAILQSPQKKLTLSG-------ICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIP 64
Query: 207 MPPDEP 212
P P
Sbjct: 65 REPGNP 70
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 176
Score = 28.8 bits (64), Expect = 0.85
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 16 NIPVVHEEREPAAE----------KPDREDDHKKEKSVLQAKLTKLAIQIGYAGSTIAVL 65
NIP+ H E + P D H K +LQA L+++ + T +L
Sbjct: 18 NIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEIL 77
Query: 66 TVVILVIQFCV 76
+ I +IQ CV
Sbjct: 78 SKAIRLIQACV 88
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 26.7 bits (59), Expect = 1.1
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 162 RMTVVQSYICEVLSKTTPKFSSLPSNVGNLIVQAISINSAY 202
++T+ + I ++T F + N + +S++ +
Sbjct: 22 QLTLNE--IYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCF 60
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 75
Score = 25.6 bits (56), Expect = 3.2
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 162 RMTVVQSYICEVLSKTTPKFSSLPSNVGNLIVQAISINSAYTSRIMPPDEPT 213
R+T+ + I E L P F + N + +S+N + + P P
Sbjct: 16 RLTL--AEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPW 65
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 26.3 bits (57), Expect = 4.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 241 WRDDIPEEMLTRVY 254
WR D +ML R+Y
Sbjct: 144 WRGDSNNKMLQRIY 157
Score = 26.3 bits (57), Expect = 4.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 318 WRDDIPEEMLTRVY 331
WR D +ML R+Y
Sbjct: 144 WRGDSNNKMLQRIY 157
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 25.5 bits (55), Expect = 9.1
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 150 ICSDKTGTLTTNRM 163
ICSDKTGTLTTN++
Sbjct: 5 ICSDKTGTLTTNQL 18
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.383
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,313,758
Number of extensions: 57529
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 17
Length of query: 376
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,213,086
Effective search space: 350581854
Effective search space used: 350581854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)