BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8075
(1074 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 353 bits (905), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 190/441 (43%), Positives = 286/441 (64%), Gaps = 20/441 (4%)
Query: 621 QVNGTIWTELDESKLYASMELEVVDKLFCAYQK--------NGVPADGSVEDXXXXXXXX 672
++ GT+WTE+D++K++ ++LE +++ F AYQ+ N + D
Sbjct: 27 KLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAID-DTLSSKL 85
Query: 673 XXXXXXXXDGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEE 732
DGRRAQNC ILLS+LK++++EI +AIL+MD + LP DMLEQLLKF P +
Sbjct: 86 KVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSD 145
Query: 733 AALLEEHSTET--LARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEA 790
LLEEH E +A+ADRFL+E+S+I HY+QRL+ L++KK+F +++++PK++++
Sbjct: 146 IDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSG 205
Query: 791 SREVTXXXXXXXXXXXXXXXGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYL 850
S EV GNYMNKG RGNA GF+++SLNK+ DTKSS + +TLLHYL
Sbjct: 206 SEEVFRSGALKQLLEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITLLHYL 265
Query: 851 VELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVP 910
+ + E ++ VL L E+L + +A+KV+M EL+ +++ LR+ LK V E+E+Q+ QP P
Sbjct: 266 ITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQP 325
Query: 911 GDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFL 970
GD+F+ V+ +F+T A+ S++EDL + K F +AV+ FGE+ IQP++FF IFD FL
Sbjct: 326 GDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFL 385
Query: 971 TTLNEAKLDNENMXXXXXXXXXXARQDAEMK-KRTTDRK-QGAKENGVVISNGSVKGEFD 1028
++EAK +NENM AR +A++K +R +RK + AKE N GEFD
Sbjct: 386 QAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKE------NSEESGEFD 439
Query: 1029 DLISALRTGDVFGEDSIAKIK 1049
DL+SALR+G+VF +D ++K+K
Sbjct: 440 DLVSALRSGEVFDKD-LSKLK 459
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 328 bits (842), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 162/372 (43%), Positives = 245/372 (65%), Gaps = 11/372 (2%)
Query: 621 QVNGTIWTELDESKLYASMELEVVDKLFCAYQK--------NGVPADGSVEDXXXXXXXX 672
++ GT+WTE+D++K++ ++LE +++ F AYQ+ N + D
Sbjct: 29 KLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAID-DTLSSKL 87
Query: 673 XXXXXXXXDGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEE 732
DGRRAQNC ILLS+LK++++EI +AIL+MD + LP DMLEQLLKF P +
Sbjct: 88 KVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSD 147
Query: 733 AALLEEHSTET--LARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEA 790
LLEEH E +A+ADRFL+E+S+I HY+QRL+ L++KK+F +++++PK++++
Sbjct: 148 IDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSG 207
Query: 791 SREVTXXXXXXXXXXXXXXXGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYL 850
S EV GNYMNKG RGNA GF+++SLNK+ DTKSS + +TLLHYL
Sbjct: 208 SEEVFRSGALKQLLEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITLLHYL 267
Query: 851 VELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVP 910
+ + E ++ VL L E+L + +A+KV+M EL+ +++ LR+ LK V E+E+Q+ QP P
Sbjct: 268 ITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQP 327
Query: 911 GDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFL 970
GD+F+ V+ +F+T A+ S++EDL + K F +AV+ FGE+ IQP++FF IFD FL
Sbjct: 328 GDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFL 387
Query: 971 TTLNEAKLDNEN 982
++EAK +NEN
Sbjct: 388 QAVSEAKQENEN 399
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 194/397 (48%), Gaps = 33/397 (8%)
Query: 596 VRCRQPPRSKLKSRIPRPYFPNVSV---QVNGTIWTELDESKLYASMELEVVDKLFCAYQ 652
+R ++P ++K + P F ++ Q+NGT+++ELD+ K+ ++L+ ++LF
Sbjct: 7 IRIKKPIKTKFRL----PVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELF---- 58
Query: 653 KNGVPADGSVED---XXXXXXXXXXXXXXXXDGRRAQNCTILLSKLKMTDEEISKAILSM 709
A G D + RA+N I L K + EEI +AI +
Sbjct: 59 --KTKAQGPALDLICSKNKTAQKAASKVTLLEANRAKNLAITLRKAGRSAEEICRAIHTF 116
Query: 710 DSADQLPLDMLEQLLKFTPNTEEAALL-----EEHSTETLARADRFLYEISKIPHYEQRL 764
D LP+D +E L++F P E LL E E LA DRF+ SK+ QR+
Sbjct: 117 D-LQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQRM 175
Query: 765 RCLHYKKRFHFWISDIEPKIKSVMEASREVTXXXXXXXXXXXXXXXGNYMNKGARGNASG 824
+ + F + + P++ +++ AS V GNYMN RG G
Sbjct: 176 AGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSSKRGAVYG 235
Query: 825 FRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEVLKLEEDLCHVKEASKVSMKELEN 884
F+L SL+ L+DTK S+ R +TLLH++ ++++ E+ ++L V++A+ VS LEN
Sbjct: 236 FKLQSLDLLLDTK-STDRKMTLLHFIALTVKEKYPELANFWQELHFVEKAAAVS---LEN 291
Query: 885 DMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFD 944
+ ++KE+ R +E R + + + V++ FL++ +L +++ + + ++
Sbjct: 292 VLL----DVKELGRGMELIRRECSIHDN---SVLRNFLSTNEGKLDKLQRDAKTAEEAYN 344
Query: 945 RAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEAKLDNE 981
VR FGE + P FF +F F+ + EA+ +NE
Sbjct: 345 AVVRYFGESPKTTPPSVFFPVFVRFIRSYKEAEQENE 381
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 176/363 (48%), Gaps = 6/363 (1%)
Query: 681 DGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLEEHS 740
D + AQN +I L +M +EI IL ++ A L M++ L+K P E+ +L E
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEA-VLTESMIQNLIKQMPEPEQLKMLSELK 161
Query: 741 TET--LARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTXXX 798
E LA +++F + +P RL + +K +F + +I+P+I SV A E+
Sbjct: 162 EEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 221
Query: 799 XXXXXXXXXXXXGNYMNKGAR-GNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKR 857
GNYMN G+R A GF ++ L KL DTKS+ + +TLLH+L EL E
Sbjct: 222 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQK-MTLLHFLAELCEND 280
Query: 858 FKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPV 917
EVLK ++L HV++AS+VS + L+ + Q++ + +V R+++ D+F+
Sbjct: 281 HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQ-NFPAATDEKDKFVEK 339
Query: 918 MKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEAK 977
M F+ A + +++ + +M+T + F D + E+FF+ F +A
Sbjct: 340 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAV 399
Query: 978 LDNENMXXXXXXXXXXARQDAEMKKRTTDRKQGAKENGVVISNGSVKGEFDDLISALRTG 1037
+N+ + +K +++Q ++ + + G G D L+ AL++G
Sbjct: 400 KENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEALQSG 459
Query: 1038 DVF 1040
F
Sbjct: 460 AAF 462
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 176/363 (48%), Gaps = 6/363 (1%)
Query: 681 DGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLEEHS 740
D + AQN +I L +M +EI IL ++ A L M++ L+K P E+ +L E
Sbjct: 84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEA-VLTESMIQNLIKQMPEPEQLKMLSELK 142
Query: 741 TET--LARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTXXX 798
E LA +++F + +P RL + +K +F + +I+P+I SV A E+
Sbjct: 143 EEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 202
Query: 799 XXXXXXXXXXXXGNYMNKGAR-GNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKR 857
GNYMN G+R A GF ++ L KL DTKS+ + +TLLH+L EL E
Sbjct: 203 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQK-MTLLHFLAELCEND 261
Query: 858 FKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPV 917
EVLK ++L HV++AS+VS + L+ + Q++ + +V R+++ D+F+
Sbjct: 262 HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQ-NFPAATDEKDKFVEK 320
Query: 918 MKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEAK 977
M F+ A + +++ + +M+T + F D + E+FF+ F +A
Sbjct: 321 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAV 380
Query: 978 LDNENMXXXXXXXXXXARQDAEMKKRTTDRKQGAKENGVVISNGSVKGEFDDLISALRTG 1037
+N+ + +K +++Q ++ + + G G D L+ AL++G
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEALQSG 440
Query: 1038 DVF 1040
F
Sbjct: 441 AAF 443
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 8/305 (2%)
Query: 681 DGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLEEHS 740
D + AQN +I L +M +EI IL ++ A L M++ L+K P E+ +L E
Sbjct: 13 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEA-VLTESMIQNLIKQMPEPEQLKMLSELK 71
Query: 741 TET--LARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTXXX 798
E LA +++F + +P RL + +K +F + +I+P+I SV A E+
Sbjct: 72 EEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 131
Query: 799 XXXXXXXXXXXXGNYMNKGAR-GNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKR 857
GNYMN G+R A GF ++ L KL DTKS+ + +TLLH+L EL E
Sbjct: 132 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQK-MTLLHFLAELCEND 190
Query: 858 FKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIE-FQRVQPLVPGDRFLP 916
EVLK ++L HV++AS+VS + L+ + Q++ + +V R+++ F D+F+
Sbjct: 191 HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATD--EKDKFVE 248
Query: 917 VMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEA 976
M F+ A + +++ + +M+T + F D + E+FF+ F +A
Sbjct: 249 KMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQA 308
Query: 977 KLDNE 981
+N+
Sbjct: 309 VKENQ 313
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
pdb|2BNX|B Chain B, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
Length = 386
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 19/277 (6%)
Query: 129 LDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLH------SSIIGCIKA 182
L+SLR +L P S+V F EGL +LL+ LK L +TS + II C+KA
Sbjct: 26 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 84
Query: 183 LMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIP---GGHKKVLDAM 239
MNN G +L I ++ +++ I ++L A+C++P +++VL+AM
Sbjct: 85 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 144
Query: 240 SHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHL 299
+ +E RFQ +++ L T I ++K + +NA+++ P + L+FR+H+
Sbjct: 145 TERAEM-DEVERFQPLLDGLKSGTSI-----ALKVGCLQLINALIT--PAE-ELDFRVHI 195
Query: 300 RYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMF 359
R E++ LG+ ++ +LR ENE + L F+ ED +L + + +E +F
Sbjct: 196 RSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVF 255
Query: 360 NILRRKLGHTAAYPXXXXXXXXXXXXXXEFGCHPQHW 396
I+ + + A P ++ PQ++
Sbjct: 256 QIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQYY 292
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 19/277 (6%)
Query: 129 LDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLH------SSIIGCIKA 182
L+SLR +L P S+V F EGL +LL+ LK L +TS + II C+KA
Sbjct: 88 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146
Query: 183 LMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIP---GGHKKVLDAM 239
MNN G +L I ++ +++ I ++L A+C++P +++VL+AM
Sbjct: 147 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 206
Query: 240 SHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHL 299
+ +E RFQ +++ L T I ++K + +NA+++ P + L+FR+H+
Sbjct: 207 TERAEM-DEVERFQPLLDGLKSGTSI-----ALKVGCLQLINALIT--PAE-ELDFRVHI 257
Query: 300 RYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMF 359
R E++ LG+ ++ +LR ENE + L F+ ED +L + + +E +F
Sbjct: 258 RSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVF 317
Query: 360 NILRRKLGHTAAYPXXXXXXXXXXXXXXEFGCHPQHW 396
I+ + + A P ++ PQ++
Sbjct: 318 QIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQYY 354
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|D Chain D, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 383
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 19/277 (6%)
Query: 129 LDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLH------SSIIGCIKA 182
L+SLR +L + P S+V F EGL +LL+ LK L +TS + II C+KA
Sbjct: 88 LESLRVSLTSHPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146
Query: 183 LMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIP---GGHKKVLDAM 239
MNN G +L I ++ +++ I ++L A+C++P +++VL+AM
Sbjct: 147 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 206
Query: 240 SHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHL 299
+ +E RFQ +++ L T I ++K + +NA+++ P + L+FR+H+
Sbjct: 207 TERAEM-DEVERFQPLLDGLKSGTSI-----ALKVGCLQLINALIT--PAE-ELDFRVHI 257
Query: 300 RYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMF 359
R E++ LG+ ++ +LR ENE + L F+ ED +L + + +E +F
Sbjct: 258 RSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVF 317
Query: 360 NILRRKLGHTAAYPXXXXXXXXXXXXXXEFGCHPQHW 396
I+ + + A P ++ PQ++
Sbjct: 318 QIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQYY 354
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|B Chain B, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|C Chain C, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|D Chain D, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 330
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 19/277 (6%)
Query: 129 LDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLH------SSIIGCIKA 182
L+SLR +L P S+V F EGL +LL+ LK L +TS + II C+KA
Sbjct: 28 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 86
Query: 183 LMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIP---GGHKKVLDAM 239
MNN G +L I ++ +++ I ++L A+C++P +++VL+AM
Sbjct: 87 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 146
Query: 240 SHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHL 299
+ +E RFQ +++ L T I ++K + +NA+++ P + L+FR+H+
Sbjct: 147 TERAEM-DEVERFQPLLDGLKSGTSI-----ALKVGCLQLINALIT--PAE-ELDFRVHI 197
Query: 300 RYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMF 359
R E++ LG+ ++ +LR ENE + L F+ ED +L + + +E +F
Sbjct: 198 RSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVF 257
Query: 360 NILRRKLGHTAAYPXXXXXXXXXXXXXXEFGCHPQHW 396
I+ + + A P ++ PQ++
Sbjct: 258 QIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQYY 294
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|B Chain B, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|C Chain C, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|D Chain D, Autoinhibited Formin Mdia1 Structure
Length = 327
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 19/277 (6%)
Query: 129 LDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLH------SSIIGCIKA 182
L+SLR +L P S+V F EGL +LL+ LK L +TS + II C+KA
Sbjct: 26 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 84
Query: 183 LMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIP---GGHKKVLDAM 239
MNN G +L I ++ +++ I ++L A+C++P +++VL+AM
Sbjct: 85 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 144
Query: 240 SHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHL 299
+ +E RFQ +++ L T I ++K + +NA+++ P + L+FR+H+
Sbjct: 145 TERAEM-DEVERFQPLLDGLKSGTSI-----ALKVGCLQLINALIT--PAE-ELDFRVHI 195
Query: 300 RYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMF 359
R E++ LG+ ++ +LR ENE + L F+ ED +L + + +E +F
Sbjct: 196 RSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVF 255
Query: 360 NILRRKLGHTAAYPXXXXXXXXXXXXXXEFGCHPQHW 396
I+ + + A P ++ PQ++
Sbjct: 256 QIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQYY 292
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|A Chain A, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 317
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 19/277 (6%)
Query: 129 LDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLH------SSIIGCIKA 182
L+SLR +L P S+V F EGL +LL+ LK L +TS + II C+KA
Sbjct: 22 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 80
Query: 183 LMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIP---GGHKKVLDAM 239
MNN G +L I ++ +++ I ++L A+C++P +++VL+AM
Sbjct: 81 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 140
Query: 240 SHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHL 299
+ +E RFQ +++ L T I ++K + +NA+++ P + L+FR+H+
Sbjct: 141 TERAEM-DEVERFQPLLDGLKSGTSI-----ALKVGCLQLINALIT--PAE-ELDFRVHI 191
Query: 300 RYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMF 359
R E++ LG+ ++ +LR ENE + L F+ ED +L + + +E +F
Sbjct: 192 RSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVF 251
Query: 360 NILRRKLGHTAAYPXXXXXXXXXXXXXXEFGCHPQHW 396
I+ + + A P ++ PQ++
Sbjct: 252 QIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQYY 288
>pdb|2F31|A Chain A, Crystal Structure Of The Autoinhibitory Switch In Formin
Mdia1; The DidDAD COMPLEX
Length = 233
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 19/212 (8%)
Query: 129 LDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLH------SSIIGCIKA 182
L+SLR +L P S+V F EGL +LL+ LK L +TS + II C+KA
Sbjct: 22 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 80
Query: 183 LMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIP---GGHKKVLDAM 239
MNN G +L I ++ +++ I ++L A+C++P +++VL+AM
Sbjct: 81 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 140
Query: 240 SHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHL 299
+ +E RFQ +++ L T I ++K + +NA+++ P + L+FR+H+
Sbjct: 141 TERAEM-DEVERFQPLLDGLKSGTSI-----ALKVGCLQLINALIT--PAEE-LDFRVHI 191
Query: 300 RYEVIMLGIQPIIDKLRTHENETLDRHLDFFE 331
R E++ LG+ ++ +LR ENE + L F+
Sbjct: 192 RSELMRLGLHQVLQELREIENEDMKVQLCVFD 223
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 8/243 (3%)
Query: 744 LARADRFLYE--ISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTXXXXXX 801
L RAD+ + ++ ++ R+R L + +++ K++ V +A +
Sbjct: 181 LQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLR 240
Query: 802 XXXXXXXXXGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEV 861
GN+MN ++ A GF+L++L +L K +++ +T L+Y+ ++ +
Sbjct: 241 NVFNVILAVGNFMNDTSK-QAQGFKLSTLQRLTFIKDTTN-SMTFLNYVEKIVRLNYPSF 298
Query: 862 LKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRV---QPLVPGDRFLPVM 918
+L V + KVS+++L ND ++ V R +E + P D+ L
Sbjct: 299 NDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKT 358
Query: 919 KEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNS-SIQPEDFFVIFDTFLTTLNEAK 977
L A + +ED + F+ + +GED+ FF F F+ +A+
Sbjct: 359 LPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQ 418
Query: 978 LDN 980
N
Sbjct: 419 AQN 421
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 8/243 (3%)
Query: 744 LARADRFLYE--ISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTXXXXXX 801
L RAD+ + ++ ++ R+R L + +++ K++ V +A +
Sbjct: 158 LQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLR 217
Query: 802 XXXXXXXXXGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEV 861
GN+MN ++ A GF+L++L +L K +++ +T L+Y+ ++ +
Sbjct: 218 NVFNVILAVGNFMNDTSK-QAQGFKLSTLQRLTFIKDTTN-SMTFLNYVEKIVRLNYPSF 275
Query: 862 LKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRV---QPLVPGDRFLPVM 918
+L V + KVS+++L ND ++ V R +E + P D+ L
Sbjct: 276 NDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKT 335
Query: 919 KEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNS-SIQPEDFFVIFDTFLTTLNEAK 977
L A + +ED + F+ + +GED+ FF F F+ +A+
Sbjct: 336 LPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQ 395
Query: 978 LDN 980
N
Sbjct: 396 AQN 398
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 8/243 (3%)
Query: 744 LARADRFLYE--ISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTXXXXXX 801
L RAD+ + ++ ++ R+R L + +++ K++ V +A +
Sbjct: 152 LQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLR 211
Query: 802 XXXXXXXXXGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEV 861
GN+MN ++ A GF+L++L +L K +++ +T L+Y+ ++ +
Sbjct: 212 NVFNVILAVGNFMNDTSK-QAQGFKLSTLQRLTFIKDTTN-SMTFLNYVEKIVRLNYPSF 269
Query: 862 LKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRV---QPLVPGDRFLPVM 918
+L V + KVS+++L ND ++ V R +E + P D+ L
Sbjct: 270 NDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKT 329
Query: 919 KEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNS-SIQPEDFFVIFDTFLTTLNEAK 977
L A + +ED + F+ + +GED+ FF F F+ +A+
Sbjct: 330 LPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQ 389
Query: 978 LDN 980
N
Sbjct: 390 AQN 392
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 908 LVPGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPE 960
+VP D FLP ++ + CR +++ + +++T F R +F D+ +++P+
Sbjct: 260 IVPADGFLPALQRW-----CRDNDVVFIADEVQTGFARTGAMFACDHENVEPD 307
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 908 LVPGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPE 960
+VP D FLP + ++ CR +++ + +++T F R +F ++ I P+
Sbjct: 243 IVPADGFLPTLLDW-----CRKNDVVFIADEVQTGFARTGAMFACEHEGIDPD 290
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 457 NRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRAD 516
+ LA E+ DQ + K L+ + + +RLE E + E K +LED SELK D
Sbjct: 906 DNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDID 965
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 457 NRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRAD 516
+ LA E+ DQ + K L+ + + +RLE E + E K +LED SELK D
Sbjct: 906 DNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDID 965
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 448 LEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDR 507
LE E+ DL ++A+ + ++ + + +E L RLE ET+ A +K+ ELE
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 508 ISELKHRADFEQDERKRLE 526
IS+L+ + E+ R + E
Sbjct: 1125 ISDLQEDLESEKAARNKAE 1143
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase
(T201a Mutant) Complexed With Mg And Biphosphonate
Inhibitor
Length = 376
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 451 ENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELED 506
EN+ + +Q D QEK+D + S+I L ++ GH E +A L++
Sbjct: 15 ENLYFQGHMMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKE 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,934,944
Number of Sequences: 62578
Number of extensions: 1009995
Number of successful extensions: 3148
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3050
Number of HSP's gapped (non-prelim): 88
length of query: 1074
length of database: 14,973,337
effective HSP length: 109
effective length of query: 965
effective length of database: 8,152,335
effective search space: 7867003275
effective search space used: 7867003275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)