Query psy8075
Match_columns 1074
No_of_seqs 396 out of 1277
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 17:45:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924|consensus 100.0 1E-168 3E-173 1425.6 77.7 938 45-1052 84-1067(1102)
2 KOG1923|consensus 100.0 3.7E-86 8E-91 760.3 46.1 773 180-1049 1-813 (830)
3 smart00498 FH2 Formin Homology 100.0 3.6E-69 7.8E-74 633.4 41.4 413 612-1035 13-432 (432)
4 PF02181 FH2: Formin Homology 100.0 4.7E-62 1E-66 565.6 33.5 353 613-974 15-370 (370)
5 KOG1925|consensus 100.0 3.9E-46 8.4E-51 408.3 32.8 343 620-982 303-652 (817)
6 KOG1922|consensus 100.0 6E-41 1.3E-45 425.8 36.8 369 614-987 401-793 (833)
7 PF06371 Drf_GBD: Diaphanous G 100.0 1.3E-34 2.8E-39 304.1 14.0 173 42-227 1-187 (187)
8 PF06367 Drf_FH3: Diaphanous F 100.0 7E-33 1.5E-37 293.5 16.0 194 230-430 1-197 (197)
9 KOG1924|consensus 99.7 8.8E-14 1.9E-18 161.8 41.9 92 886-981 896-993 (1102)
10 KOG1923|consensus 97.6 0.0016 3.6E-08 78.3 18.0 15 620-634 369-383 (830)
11 PRK15319 AIDA autotransporter- 96.9 0.001 2.3E-08 86.8 6.2 6 625-630 1763-1768(2039)
12 PF06345 Drf_DAD: DRF Autoregu 96.8 0.00064 1.4E-08 39.0 1.4 15 1025-1039 1-15 (15)
13 PF11841 DUF3361: Domain of un 96.8 0.04 8.6E-07 55.9 15.0 148 141-311 1-153 (160)
14 KOG3671|consensus 96.3 0.015 3.2E-07 67.2 9.2 12 377-388 240-251 (569)
15 PHA03247 large tegument protei 95.3 0.075 1.6E-06 71.9 10.6 15 299-313 2114-2128(3151)
16 PHA03247 large tegument protei 95.1 0.087 1.9E-06 71.4 10.3 12 451-462 2371-2382(3151)
17 KOG1922|consensus 95.0 1.6 3.4E-05 56.9 21.9 69 912-980 666-737 (833)
18 COG5178 PRP8 U5 snRNP spliceos 94.6 0.021 4.5E-07 70.8 2.8 9 944-952 735-743 (2365)
19 PRK13729 conjugal transfer pil 94.3 0.78 1.7E-05 54.2 14.7 24 432-455 65-88 (475)
20 KOG4672|consensus 94.3 0.19 4E-06 57.0 9.1 10 697-706 470-479 (487)
21 KOG4672|consensus 93.2 0.4 8.7E-06 54.4 9.4 7 99-105 49-55 (487)
22 KOG2999|consensus 93.2 0.85 1.8E-05 54.0 12.1 164 96-286 78-243 (713)
23 KOG1830|consensus 92.8 0.49 1.1E-05 53.9 9.4 9 687-695 489-497 (518)
24 KOG4368|consensus 92.7 16 0.00035 43.8 21.3 27 358-386 142-168 (757)
25 KOG4199|consensus 91.7 1.6 3.4E-05 49.1 11.4 141 142-316 274-425 (461)
26 PF03276 Gag_spuma: Spumavirus 91.7 2.9 6.4E-05 49.7 14.1 12 501-512 163-174 (582)
27 PF05308 Mito_fiss_reg: Mitoch 91.3 0.69 1.5E-05 50.9 8.2 9 501-509 131-139 (253)
28 KOG1925|consensus 90.4 0.37 7.9E-06 55.8 5.2 34 822-855 472-505 (817)
29 KOG4849|consensus 90.2 1.4 3.1E-05 49.0 9.2 10 640-649 358-367 (498)
30 KOG2129|consensus 89.8 41 0.0009 38.9 20.3 32 475-506 289-320 (552)
31 KOG4849|consensus 89.7 1.5 3.3E-05 48.8 9.0 8 325-332 28-35 (498)
32 cd00020 ARM Armadillo/beta-cat 89.6 1.5 3.3E-05 41.4 8.2 82 140-226 38-119 (120)
33 cd00020 ARM Armadillo/beta-cat 89.1 4.5 9.9E-05 38.0 11.1 78 146-229 2-80 (120)
34 KOG0212|consensus 87.8 21 0.00045 43.1 16.9 31 358-388 562-592 (675)
35 PF10146 zf-C4H2: Zinc finger- 87.5 44 0.00095 36.5 18.3 8 503-510 92-99 (230)
36 PF05308 Mito_fiss_reg: Mitoch 86.4 2.8 6.1E-05 46.2 8.6 14 501-514 124-137 (253)
37 PF06637 PV-1: PV-1 protein (P 85.7 20 0.00043 41.0 14.7 10 97-106 19-28 (442)
38 KOG2675|consensus 85.6 0.89 1.9E-05 52.4 4.4 18 679-696 393-411 (480)
39 PF05518 Totivirus_coat: Totiv 85.5 2.1 4.6E-05 53.0 7.7 14 46-59 76-89 (759)
40 PRK13729 conjugal transfer pil 85.1 12 0.00027 44.5 13.4 37 423-462 52-88 (475)
41 KOG0132|consensus 84.7 4.3 9.4E-05 50.1 9.7 18 52-69 6-28 (894)
42 PRK14950 DNA polymerase III su 84.4 65 0.0014 40.3 20.4 16 293-308 182-197 (585)
43 PRK14950 DNA polymerase III su 84.2 57 0.0012 40.8 19.8 26 357-384 202-227 (585)
44 cd00256 VATPase_H VATPase_H, r 82.6 36 0.00078 40.6 16.0 141 169-332 157-304 (429)
45 PF09849 DUF2076: Uncharacteri 82.0 18 0.00039 39.8 12.4 17 494-510 57-73 (247)
46 KOG4590|consensus 80.9 2.5 5.4E-05 49.4 5.6 13 698-710 320-332 (409)
47 KOG0977|consensus 80.1 70 0.0015 39.1 17.4 54 293-360 34-91 (546)
48 KOG4590|consensus 79.6 3 6.5E-05 48.8 5.7 6 393-398 66-71 (409)
49 PF07462 MSP1_C: Merozoite sur 78.1 4.1 9E-05 48.5 6.3 48 845-895 455-505 (574)
50 KOG2160|consensus 77.6 66 0.0014 37.0 15.4 134 129-284 145-281 (342)
51 PF10508 Proteasom_PSMB: Prote 77.5 50 0.0011 40.5 15.7 63 173-235 94-156 (503)
52 KOG1962|consensus 77.1 36 0.00078 36.5 12.3 62 448-509 149-210 (216)
53 KOG2675|consensus 76.6 2.6 5.6E-05 48.8 3.9 12 742-753 455-466 (480)
54 KOG0946|consensus 75.4 1.6E+02 0.0036 37.3 18.6 202 47-286 22-242 (970)
55 PF03224 V-ATPase_H_N: V-ATPas 74.2 37 0.00081 38.7 12.8 138 170-328 164-306 (312)
56 PF05278 PEARLI-4: Arabidopsis 73.5 1.4E+02 0.0031 33.2 16.0 22 367-388 90-111 (269)
57 smart00498 FH2 Formin Homology 73.3 21 0.00046 42.8 10.8 109 868-979 315-430 (432)
58 PHA03378 EBNA-3B; Provisional 72.4 22 0.00049 43.4 10.3 50 176-228 241-291 (991)
59 PF05518 Totivirus_coat: Totiv 71.6 9.5 0.00021 47.6 7.3 12 99-110 80-91 (759)
60 PF11707 Npa1: Ribosome 60S bi 69.7 78 0.0017 36.5 14.1 134 172-332 42-184 (330)
61 smart00787 Spc7 Spc7 kinetocho 68.6 83 0.0018 36.0 13.6 50 456-505 210-259 (312)
62 KOG3895|consensus 68.0 28 0.0006 39.5 9.2 10 139-148 97-106 (488)
63 PF07462 MSP1_C: Merozoite sur 65.2 13 0.00028 44.6 6.3 6 799-804 416-421 (574)
64 PRK09039 hypothetical protein; 64.6 91 0.002 36.2 13.2 15 371-385 15-29 (343)
65 PF04111 APG6: Autophagy prote 64.2 1E+02 0.0022 35.4 13.3 75 439-513 60-134 (314)
66 KOG1984|consensus 64.1 27 0.00058 44.2 8.9 14 677-690 352-365 (1007)
67 PRK10884 SH3 domain-containing 63.4 60 0.0013 34.9 10.5 15 447-461 97-111 (206)
68 COG4026 Uncharacterized protei 63.2 48 0.001 35.3 9.3 45 439-483 138-182 (290)
69 KOG0566|consensus 60.8 18 0.00039 46.1 6.8 37 212-248 489-533 (1080)
70 PRK12270 kgd alpha-ketoglutara 60.7 29 0.00064 44.8 8.6 12 638-649 236-247 (1228)
71 PRK11637 AmiB activator; Provi 59.7 3.7E+02 0.0081 32.1 18.9 27 922-948 105-131 (428)
72 PF12325 TMF_TATA_bd: TATA ele 57.6 94 0.002 30.4 9.8 50 925-976 66-115 (120)
73 KOG0559|consensus 55.9 26 0.00057 39.9 6.4 16 636-651 257-272 (457)
74 PF10508 Proteasom_PSMB: Prote 54.7 2.8E+02 0.0062 34.0 15.9 153 128-313 97-249 (503)
75 PF05266 DUF724: Protein of un 54.1 3E+02 0.0064 29.2 15.7 11 423-433 86-96 (190)
76 PRK14948 DNA polymerase III su 53.9 39 0.00085 42.4 8.4 11 152-162 137-147 (620)
77 PHA03378 EBNA-3B; Provisional 53.7 68 0.0015 39.5 9.6 13 273-285 278-290 (991)
78 PRK12270 kgd alpha-ketoglutara 53.0 75 0.0016 41.3 10.3 25 953-978 763-790 (1228)
79 PF08569 Mo25: Mo25-like; Int 52.9 1.5E+02 0.0032 34.4 12.2 217 96-330 9-275 (335)
80 PHA03211 serine/threonine kina 52.0 13 0.00029 44.9 3.8 15 782-796 264-278 (461)
81 KOG4500|consensus 51.9 71 0.0015 37.6 9.1 110 143-262 348-457 (604)
82 KOG1062|consensus 50.6 4E+02 0.0086 34.1 15.7 90 170-286 291-380 (866)
83 KOG0391|consensus 50.0 55 0.0012 43.0 8.5 12 335-346 1312-1323(1958)
84 PF04111 APG6: Autophagy prote 49.1 1.7E+02 0.0038 33.5 12.0 46 439-484 46-91 (314)
85 KOG0301|consensus 48.7 74 0.0016 39.4 9.0 73 168-242 600-682 (745)
86 PRK14954 DNA polymerase III su 48.4 1.2E+02 0.0027 38.1 11.4 33 127-161 23-59 (620)
87 PF10234 Cluap1: Clusterin-ass 48.2 1.9E+02 0.0041 32.4 11.5 118 778-900 64-192 (267)
88 KOG0307|consensus 48.0 73 0.0016 41.5 9.3 11 320-330 450-460 (1049)
89 PF12325 TMF_TATA_bd: TATA ele 48.0 2.8E+02 0.006 27.2 12.8 31 436-466 30-60 (120)
90 KOG1832|consensus 47.3 60 0.0013 41.2 8.1 105 127-244 372-481 (1516)
91 KOG0559|consensus 47.1 61 0.0013 37.1 7.5 13 697-709 342-354 (457)
92 KOG0162|consensus 47.1 48 0.001 41.1 7.1 66 530-595 964-1049(1106)
93 KOG1984|consensus 46.4 79 0.0017 40.3 9.0 12 718-729 441-452 (1007)
94 KOG0307|consensus 46.2 1E+02 0.0022 40.3 10.1 19 791-809 1025-1043(1049)
95 TIGR01628 PABP-1234 polyadenyl 46.2 47 0.001 41.2 7.4 11 46-56 14-24 (562)
96 TIGR03687 pupylate_cterm ubiqu 45.9 17 0.00036 26.7 1.9 27 126-152 6-32 (33)
97 PF01213 CAP_N: Adenylate cycl 45.1 7.1 0.00015 44.4 0.0 7 369-375 127-133 (312)
98 PHA03369 capsid maturational p 44.9 3E+02 0.0065 33.9 13.1 10 279-288 177-186 (663)
99 KOG0163|consensus 44.8 2.3E+02 0.005 35.6 12.2 25 234-258 187-212 (1259)
100 TIGR01628 PABP-1234 polyadenyl 44.3 51 0.0011 40.9 7.3 8 697-704 535-542 (562)
101 KOG1077|consensus 43.9 7.9E+02 0.017 31.2 22.7 57 182-241 355-412 (938)
102 COG4026 Uncharacterized protei 43.8 3.2E+02 0.007 29.4 11.6 15 443-457 135-149 (290)
103 PF15290 Syntaphilin: Golgi-lo 43.1 1.8E+02 0.004 32.3 10.1 67 423-495 68-148 (305)
104 smart00787 Spc7 Spc7 kinetocho 42.8 4.3E+02 0.0093 30.3 13.8 45 435-479 203-247 (312)
105 PRK14954 DNA polymerase III su 42.8 1.8E+02 0.004 36.6 11.7 11 176-186 54-64 (620)
106 PF15290 Syntaphilin: Golgi-lo 42.7 2.7E+02 0.0059 31.0 11.3 30 457-486 75-104 (305)
107 KOG2002|consensus 42.6 9.3E+02 0.02 31.7 19.2 60 876-943 772-833 (1018)
108 PF10274 ParcG: Parkin co-regu 42.5 96 0.0021 32.6 7.8 52 176-228 58-110 (183)
109 PLN03200 cellulose synthase-in 41.4 62 0.0013 45.8 7.8 95 140-236 133-228 (2102)
110 KOG1103|consensus 40.9 6E+02 0.013 29.0 15.5 17 445-461 247-263 (561)
111 KOG2759|consensus 40.8 6.9E+02 0.015 29.7 19.4 161 153-332 154-317 (442)
112 KOG0163|consensus 40.5 3.1E+02 0.0068 34.6 12.4 20 931-950 893-912 (1259)
113 PF07888 CALCOCO1: Calcium bin 40.1 2.7E+02 0.0058 34.3 12.0 54 847-900 380-433 (546)
114 PF05278 PEARLI-4: Arabidopsis 39.7 4.9E+02 0.011 29.1 12.9 8 358-365 101-108 (269)
115 PRK14948 DNA polymerase III su 39.1 1.2E+02 0.0026 38.2 9.4 6 643-648 603-608 (620)
116 PF10211 Ax_dynein_light: Axon 38.8 5E+02 0.011 27.5 15.2 16 395-410 64-79 (189)
117 PF12238 MSA-2c: Merozoite sur 38.8 67 0.0014 34.3 6.0 16 351-366 42-57 (205)
118 KOG2160|consensus 38.5 6.9E+02 0.015 29.0 17.9 165 123-317 98-263 (342)
119 PF10473 CENP-F_leu_zip: Leuci 38.5 4.3E+02 0.0093 26.6 11.9 15 462-476 71-85 (140)
120 PF09304 Cortex-I_coil: Cortex 38.5 2.5E+02 0.0054 26.8 8.9 70 442-511 1-70 (107)
121 PF06005 DUF904: Protein of un 38.4 2.9E+02 0.0062 24.6 10.1 12 444-455 26-37 (72)
122 KOG0566|consensus 37.6 44 0.00096 42.8 5.1 21 274-296 672-692 (1080)
123 PF13870 DUF4201: Domain of un 37.5 4.9E+02 0.011 27.0 13.2 12 421-432 47-58 (177)
124 PF08045 CDC14: Cell division 36.9 99 0.0021 34.3 7.2 79 145-227 127-207 (257)
125 PF05536 Neurochondrin: Neuroc 36.7 1.4E+02 0.0029 37.1 9.2 56 171-228 114-169 (543)
126 TIGR02449 conserved hypothetic 36.5 2.9E+02 0.0063 24.1 8.5 16 444-459 15-30 (65)
127 KOG1785|consensus 36.2 77 0.0017 36.6 6.2 12 187-198 125-136 (563)
128 KOG4673|consensus 36.2 4.1E+02 0.0089 33.3 12.4 49 928-978 905-953 (961)
129 COG2433 Uncharacterized conser 35.1 2.9E+02 0.0063 34.2 11.1 17 319-335 343-359 (652)
130 KOG0119|consensus 35.1 1.4E+02 0.0031 35.6 8.3 15 271-285 216-230 (554)
131 KOG4001|consensus 34.6 5.7E+02 0.012 27.2 11.6 27 440-466 189-215 (259)
132 KOG2264|consensus 34.0 2.8E+02 0.006 33.8 10.4 26 487-512 123-148 (907)
133 PF07304 SRA1: Steroid recepto 33.8 14 0.0003 37.9 0.0 33 714-755 85-117 (157)
134 PF10487 Nup188: Nucleoporin s 33.8 4E+02 0.0086 35.4 13.2 131 150-286 519-670 (931)
135 PF14664 RICTOR_N: Rapamycin-i 33.5 1.4E+02 0.003 35.2 8.2 110 124-240 41-157 (371)
136 KOG0972|consensus 32.8 7.6E+02 0.016 27.8 16.0 20 173-192 57-76 (384)
137 PF12718 Tropomyosin_1: Tropom 32.5 4.1E+02 0.0089 26.8 10.3 32 438-469 23-54 (143)
138 PF04728 LPP: Lipoprotein leuc 32.2 3.1E+02 0.0067 23.2 7.9 25 879-903 5-29 (56)
139 PF08317 Spc7: Spc7 kinetochor 31.9 4.1E+02 0.0089 30.6 11.6 11 144-154 16-26 (325)
140 PF05804 KAP: Kinesin-associat 31.5 1.2E+03 0.027 29.9 17.9 150 172-332 386-560 (708)
141 PF03962 Mnd1: Mnd1 family; I 31.5 5.4E+02 0.012 27.2 11.5 10 398-407 31-40 (188)
142 PF04625 DEC-1_N: DEC-1 protei 31.4 83 0.0018 35.3 5.4 26 773-798 284-309 (407)
143 PHA03211 serine/threonine kina 31.4 53 0.0011 39.8 4.4 6 1028-1033 432-437 (461)
144 PF11932 DUF3450: Protein of u 31.3 5.5E+02 0.012 28.2 12.2 9 642-650 223-231 (251)
145 PF04625 DEC-1_N: DEC-1 protei 31.2 1.3E+02 0.0028 33.9 6.8 10 843-852 325-334 (407)
146 TIGR03185 DNA_S_dndD DNA sulfu 31.1 3.2E+02 0.0069 34.7 11.5 45 441-485 207-251 (650)
147 KOG3564|consensus 30.8 4.8E+02 0.01 31.4 11.5 64 445-508 37-100 (604)
148 PF03224 V-ATPase_H_N: V-ATPas 30.5 2.8E+02 0.006 31.6 9.9 99 126-227 168-269 (312)
149 PF06003 SMN: Survival motor n 30.3 17 0.00037 40.5 0.0 6 327-332 15-20 (264)
150 PLN02983 biotin carboxyl carri 30.1 81 0.0018 34.9 5.1 6 623-628 205-210 (274)
151 PF06003 SMN: Survival motor n 30.0 17 0.00037 40.5 0.0 8 395-402 68-75 (264)
152 PRK07764 DNA polymerase III su 29.8 1.4E+03 0.03 30.0 25.4 35 127-161 22-58 (824)
153 KOG0804|consensus 29.5 1.1E+03 0.023 28.4 14.6 17 495-511 431-447 (493)
154 KOG0161|consensus 29.5 1.3E+03 0.028 33.2 17.1 74 235-317 690-769 (1930)
155 COG4575 ElaB Uncharacterized c 29.2 2.4E+02 0.0052 26.8 7.2 73 880-955 11-84 (104)
156 TIGR02894 DNA_bind_RsfA transc 28.8 6.6E+02 0.014 25.9 10.9 8 325-332 28-35 (161)
157 PF06012 DUF908: Domain of Unk 28.6 6.2E+02 0.013 29.2 12.4 65 176-240 242-310 (329)
158 KOG3771|consensus 28.4 1.1E+03 0.024 28.4 16.7 17 458-474 158-174 (460)
159 PF10186 Atg14: UV radiation r 28.4 7.8E+02 0.017 27.3 13.1 12 685-696 265-276 (302)
160 PF07888 CALCOCO1: Calcium bin 28.2 1.2E+03 0.027 28.8 18.7 33 13-45 77-114 (546)
161 PF04849 HAP1_N: HAP1 N-termin 28.2 9.4E+02 0.02 27.5 14.4 106 359-484 162-268 (306)
162 PF07889 DUF1664: Protein of u 28.1 6E+02 0.013 25.1 11.0 31 480-510 91-121 (126)
163 PF09849 DUF2076: Uncharacteri 28.0 2E+02 0.0042 31.9 7.6 15 500-514 56-70 (247)
164 PF10165 Ric8: Guanine nucleot 28.0 1.8E+02 0.0039 35.1 8.1 97 128-227 1-108 (446)
165 KOG0946|consensus 28.0 1.3E+03 0.027 30.0 14.9 22 356-381 569-590 (970)
166 PF13764 E3_UbLigase_R4: E3 ub 27.8 1.5E+03 0.032 29.6 23.4 47 149-195 115-161 (802)
167 smart00185 ARM Armadillo/beta- 27.4 96 0.0021 23.0 3.8 34 145-183 6-39 (41)
168 PF12463 DUF3689: Protein of u 27.3 6.4E+02 0.014 28.8 11.7 103 150-259 91-198 (303)
169 PF08581 Tup_N: Tup N-terminal 27.2 4.7E+02 0.01 23.7 11.3 22 464-485 32-53 (79)
170 KOG4307|consensus 27.0 1.7E+02 0.0036 36.5 7.3 10 719-728 376-385 (944)
171 KOG4500|consensus 27.0 3.9E+02 0.0085 31.8 9.9 65 178-242 64-141 (604)
172 PF10211 Ax_dynein_light: Axon 26.6 7.8E+02 0.017 26.0 12.1 27 441-467 125-151 (189)
173 PF08389 Xpo1: Exportin 1-like 26.4 1.3E+02 0.0029 29.4 5.8 49 170-222 100-148 (148)
174 PF07200 Mod_r: Modifier of ru 26.4 5.9E+02 0.013 25.5 10.5 44 930-982 99-142 (150)
175 PF11214 Med2: Mediator comple 26.3 2.7E+02 0.0058 26.5 7.0 7 891-897 27-33 (105)
176 PLN03200 cellulose synthase-in 26.3 5.2E+02 0.011 37.2 12.7 98 126-229 422-519 (2102)
177 COG2433 Uncharacterized conser 26.2 6.8E+02 0.015 31.2 12.1 12 639-650 610-621 (652)
178 PF12777 MT: Microtubule-bindi 26.1 5.3E+02 0.012 29.9 11.3 38 443-480 8-45 (344)
179 KOG3753|consensus 26.1 2.8E+02 0.0061 35.6 9.1 9 358-366 466-474 (1114)
180 KOG0971|consensus 25.8 1.6E+03 0.035 29.4 17.8 25 296-320 368-392 (1243)
181 cd00280 TRFH Telomeric Repeat 25.7 4.8E+02 0.01 27.6 9.4 54 834-888 47-101 (200)
182 KOG3546|consensus 25.5 2.4E+02 0.0052 34.7 8.1 24 806-829 1111-1140(1167)
183 PRK10132 hypothetical protein; 25.5 2.2E+02 0.0048 27.3 6.6 44 912-955 44-87 (108)
184 PF11559 ADIP: Afadin- and alp 25.3 7E+02 0.015 25.0 11.6 24 439-462 76-99 (151)
185 KOG3397|consensus 25.1 85 0.0018 32.4 3.8 15 270-284 22-36 (225)
186 TIGR03752 conj_TIGR03752 integ 24.8 5.3E+02 0.011 31.2 10.8 24 438-461 68-91 (472)
187 TIGR03319 YmdA_YtgF conserved 24.6 5.3E+02 0.011 31.8 11.3 6 643-648 277-282 (514)
188 KOG0243|consensus 24.5 5.9E+02 0.013 33.8 11.9 16 278-296 328-343 (1041)
189 PF10498 IFT57: Intra-flagella 24.5 1.1E+03 0.024 27.7 13.3 16 392-407 192-208 (359)
190 KOG0213|consensus 24.4 2.6E+02 0.0056 35.4 8.3 79 147-227 503-582 (1172)
191 PRK04863 mukB cell division pr 24.0 1.6E+03 0.035 31.6 16.6 187 307-514 227-419 (1486)
192 PF06160 EzrA: Septation ring 23.9 6.4E+02 0.014 31.4 12.1 122 854-985 73-201 (560)
193 KOG0391|consensus 23.9 1.4E+02 0.003 39.6 6.1 12 48-59 1130-1141(1958)
194 PRK07764 DNA polymerase III su 23.9 1.7E+03 0.038 29.1 19.9 9 699-707 567-575 (824)
195 KOG0250|consensus 23.6 6.1E+02 0.013 33.7 11.7 80 433-512 334-414 (1074)
196 PF00514 Arm: Armadillo/beta-c 23.6 1E+02 0.0022 23.4 3.4 35 144-183 5-39 (41)
197 PF13646 HEAT_2: HEAT repeats; 23.6 1.8E+02 0.0039 25.6 5.5 57 154-225 2-58 (88)
198 PF01698 FLO_LFY: Floricaula / 23.5 27 0.00058 40.4 0.0 10 643-652 50-59 (386)
199 COG4942 Membrane-bound metallo 22.9 6.6E+02 0.014 30.0 11.0 39 445-483 68-106 (420)
200 KOG0994|consensus 22.9 2E+03 0.044 29.5 21.2 25 321-345 1453-1477(1758)
201 PF01698 FLO_LFY: Floricaula / 22.8 28 0.00061 40.2 0.0 10 843-852 245-254 (386)
202 KOG3080|consensus 22.7 5.7E+02 0.012 28.9 9.7 57 910-980 133-189 (328)
203 PF15358 TSKS: Testis-specific 22.3 1.3E+03 0.029 27.2 12.8 9 700-708 294-302 (558)
204 KOG4848|consensus 22.3 9.4E+02 0.02 25.4 11.5 18 936-953 166-183 (225)
205 PF07106 TBPIP: Tat binding pr 22.2 8.6E+02 0.019 24.9 13.0 104 400-513 4-137 (169)
206 KOG2264|consensus 22.0 5.4E+02 0.012 31.5 10.0 33 442-474 99-131 (907)
207 PF07304 SRA1: Steroid recepto 21.8 30 0.00066 35.4 0.0 8 688-695 74-81 (157)
208 PRK13182 racA polar chromosome 21.7 4.9E+02 0.011 27.2 8.8 17 444-460 93-109 (175)
209 COG3416 Uncharacterized protei 21.7 6.1E+02 0.013 27.2 9.3 17 496-512 59-75 (233)
210 PRK14849 putative lipoprotein/ 21.5 64 0.0014 44.6 2.8 12 230-241 1077-1088(1806)
211 PF12718 Tropomyosin_1: Tropom 21.4 8.4E+02 0.018 24.5 10.7 34 440-473 11-44 (143)
212 KOG0980|consensus 21.2 1.1E+03 0.023 30.9 12.7 11 249-259 225-235 (980)
213 PRK14849 putative lipoprotein/ 21.2 66 0.0014 44.5 2.8 7 624-630 1523-1529(1806)
214 PF05377 FlaC_arch: Flagella a 21.0 3.1E+02 0.0066 23.1 5.6 39 451-489 1-39 (55)
215 KOG1943|consensus 21.0 2.1E+03 0.046 29.0 16.1 66 214-286 90-155 (1133)
216 KOG0995|consensus 20.9 8.5E+02 0.018 30.1 11.5 32 152-183 104-137 (581)
217 KOG2072|consensus 20.8 9E+02 0.019 31.2 11.9 32 127-162 26-57 (988)
218 PRK09039 hypothetical protein; 20.8 6.3E+02 0.014 29.4 10.5 48 441-488 135-182 (343)
219 PF11221 Med21: Subunit 21 of 20.7 6.1E+02 0.013 25.5 9.1 57 927-983 3-88 (144)
220 COG5185 HEC1 Protein involved 20.7 1.5E+03 0.033 27.3 14.4 152 362-514 126-352 (622)
221 PF08657 DASH_Spc34: DASH comp 20.5 4.8E+02 0.01 29.1 9.0 52 423-474 157-211 (259)
222 KOG4603|consensus 20.5 9.7E+02 0.021 24.9 10.5 82 862-954 103-186 (201)
223 PF04420 CHD5: CHD5-like prote 20.4 3.8E+02 0.0082 27.5 7.7 65 880-949 36-102 (161)
224 PF14668 RICTOR_V: Rapamycin-i 20.2 3E+02 0.0066 24.4 5.9 60 175-235 6-66 (73)
225 KOG0980|consensus 20.2 1E+03 0.022 31.0 12.2 13 758-770 761-773 (980)
226 PF12765 Cohesin_HEAT: HEAT re 20.2 89 0.0019 24.5 2.3 31 192-222 12-42 (42)
No 1
>KOG1924|consensus
Probab=100.00 E-value=1.4e-168 Score=1425.58 Aligned_cols=938 Identities=28% Similarity=0.452 Sum_probs=757.5
Q ss_pred ChhhHHHHHHHHHHhcCCChhHHHhhcCCChHHHHHHHHhhcc----cccCCCCCCCChHHHHHHHhcccCCCCCCCChh
Q psy8075 45 PTNELNTMFEELVEELDLTAPNKAAMLSLPDEKKWQIYCSRKM----DQTSTTDAPDNPEQYIEQLRNFKSSPLTEHDDT 120 (1074)
Q Consensus 45 ~~~ei~~~F~~ll~~~nl~~~~~~~m~~~~~ekKw~li~~~~~----~~~~~~~~~~~P~~yi~~L~~~~~~~~~~~~~~ 120 (1074)
+++++...|+.|+++|||++++|++|++.+...|..||.+.-+ ...+.++++.++.+||++|++..
T Consensus 84 s~~e~~~~F~~~~~dmni~eekr~pll~K~~~ek~kmis~~l~~k~~~~~s~ne~~~~s~eyV~~l~~gl---------- 153 (1102)
T KOG1924|consen 84 SSNEVLELFELMGEDMNINEEKRKPLLDKDLPEKRKMISQYLQMKMMIRKSDNEAKGSSPEYVVELRSGL---------- 153 (1102)
T ss_pred cHHHHHHHHHHHhhhccccHhhhhhhhhcCchHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHHHccc----------
Confidence 5789999999999999999999999999888887766643321 11122345678899999998764
Q ss_pred hhhhHHHHHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhcccccC----CcchhHHHHHHHHHHhcChhhHHHhhcC
Q psy8075 121 EIKSRTRILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSG----QTSLHSSIIGCIKALMNNSTGRSHVLGY 196 (1074)
Q Consensus 121 ~~~~~~~~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~----~~~~~~~~l~ClkalmN~~~G~~~vl~~ 196 (1074)
+.....+||.+|||+|.+||||||.+|. ..|+..|+++|.++..... +..+++++|+||||+|||++|+..|+..
T Consensus 154 ~t~~l~~CleslRVsL~~npVSwvn~Fg-vegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrClka~mNn~~Gl~~vL~~ 232 (1102)
T KOG1924|consen 154 STKKLLECLESLRVSLTSNPVSWVNKFG-VEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRCLKAFMNNKFGLVLVLRR 232 (1102)
T ss_pred ccccHHHHHHHHhhhhcCCccHHHHHhh-hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccccceeeeecC
Confidence 2346789999999999999999999999 7999999999999754332 3456899999999999999999999999
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHHhccC--CchhHHHHHHhhHHHHcccccchHHHHHHhhhccCCccchhHHHH
Q psy8075 197 PGAIDIIAQSLSTENIKTKIAVLEILGAVCLIP--GGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKT 274 (1074)
Q Consensus 197 ~~~i~~la~sL~s~~~~tr~~v~elLaavc~~~--~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~ 274 (1074)
...+..+|++||...+.+++.|+.+|+|+|+|. +|.++||+||+...+. ....||++||++|+.. +...+.+
T Consensus 233 e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~-~~veRF~piv~gl~~~-----e~~~l~v 306 (1102)
T KOG1924|consen 233 ERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEA-KPVERFRPIVEGLDFL-----EKQQLQV 306 (1102)
T ss_pred CccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhh-cchhhhhhHHHHHhcc-----chHHHHH
Confidence 999999999999999999999999999999995 6999999999998754 7789999999999764 4688999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHhccCchHHHHHHHHHHHhHHhhHHHHHhhhcCCccCCCC
Q psy8075 275 ALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKS 354 (1074)
Q Consensus 275 a~m~lIN~lv~~~~~~~dl~~R~~lR~Ef~~~GL~~~l~~Lr~~~~~~L~~qi~~fe~~~~eDe~el~~~~~~~~~d~~~ 354 (1074)
+||+|||+++++ +.||+||+|||+||+++||+++|++|+..+|+.|+.|+++|++++++|.+||.+|++++..++++
T Consensus 307 acmq~INal~t~---p~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkvfdE~~e~Dl~el~~rledir~emDd 383 (1102)
T KOG1924|consen 307 ACMQFINALVTS---PSDLDFRLHLRSEFMRDGLHKYLPDLTEINNDILDVQLKVFDEHKEDDLEELSGRLEDIRAEMDD 383 (1102)
T ss_pred HHHHHHHHhcCC---HHHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHHHhhhhhhhHHHHHhHHHhhhhhhcc
Confidence 999999999997 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHhccCCccCCCchhHHHHHHHHHHHHhhhcccCCCccchh---hhhhHHHHHHH
Q psy8075 355 ATSMFNILRRKLGHTAAYPHFLSLLHHCILLPLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHIL---LKINVKKVVHL 431 (1074)
Q Consensus 355 ~~~v~~~l~~~~~~t~a~~~~lSiLQhLLli~~~~~~~~~~~~lld~~v~qivl~~~~g~d~d~~~---l~~~v~~li~~ 431 (1074)
.++||+.|++.+++|.+++||||||||||+|++|+..+++||+||++||+||||| ++|.||||.+ |++++..+||.
T Consensus 384 ~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlH-r~~~DPdf~yr~~l~id~~~liD~ 462 (1102)
T KOG1924|consen 384 ANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLH-RTGMDPDFKYRFRLDIDLTELIDK 462 (1102)
T ss_pred HHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh-cCCCCCCcchhhcccCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 8999999976 66999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy8075 432 LAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISEL 511 (1074)
Q Consensus 432 l~~~~e~~~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l 511 (1074)
+++++.+++.++++.+++++.... +.+...+..++. ...+.+..++.....+
T Consensus 463 ~vdkak~eeseqkA~e~~kk~~ke----------~ta~qe~qael~------------------k~e~Ki~~l~ae~~al 514 (1102)
T KOG1924|consen 463 MVDKAKAEESEQKAAELEKKFDKE----------LTARQEAQAELQ------------------KHEEKIKLLEAEKQAL 514 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHH------------------HhhhhcccCchhhhhc
Confidence 999888777777776666654332 111111111111 1112233344433344
Q ss_pred hhccchhhhhhhhhcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC---CCCCCCCCCCCCCC
Q psy8075 512 KHRADFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPP--PPPPA---SLPPPPPPRRSSDL 586 (1074)
Q Consensus 512 ~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~ppppppppp~~~~ppp--pp~pg---~pPPPPpppp~~~~ 586 (1074)
.+... ..|..++.||||+.+ + +|++++ +|||||||.|++++||| ||.|| +||||||||++|||
T Consensus 515 ~s~~~---------~~~~~~~iP~PP~~p-p-~gG~g~-pppPppPPlpggag~PPPPpplPg~aG~PPpPppppg~~gp 582 (1102)
T KOG1924|consen 515 SSPSQ---------LLPIDGGIPPPPPLP-P-TGGTGP-PPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGP 582 (1102)
T ss_pred cCccc---------CCCCCCCCCCCCCCC-C-CCCCCC-CCCCCCCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCC
Confidence 33221 111111211111110 0 111111 11111111121111111 11111 12222222222222
Q ss_pred CCCCCCCCC-------------CCCCC-CCCCCCCCCCCCCCCCCcc---------cCcCCCcccccCccchhccCCHHH
Q psy8075 587 PYLTCPRPL-------------VRCRQ-PPRSKLKSRIPRPYFPNVS---------VQVNGTIWTELDESKLYASMELEV 643 (1074)
Q Consensus 587 pppp~~~~~-------------~~~p~-~~~~~~~k~~~~p~~~lk~---------~~i~~TiW~~~~~~~~~~~ld~~~ 643 (1074)
||||||++. +.+|. +.++ +.|++|+|.++|+. .-.+++||.++++.++.+.--|..
T Consensus 583 pPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gL-kpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfak 661 (1102)
T KOG1924|consen 583 PPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGL-KPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAK 661 (1102)
T ss_pred CCcCCCCCCCCCCCCCCCCCcccccccCCCCC-CccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHH
Confidence 222221111 11111 1123 55778999999987 345799999999999876666899
Q ss_pred HHHHhhhhccCCCCCCCCccccccccccccCccccccchhhhhhHHHHhccCCCCHHHHHHHHHcCCCCCCCCHHHHHHH
Q psy8075 644 VDKLFCAYQKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQL 723 (1074)
Q Consensus 644 lE~lF~~~~~~~~~~~~~~~~~~~~~k~kk~k~isvLD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~~L~~e~l~~L 723 (1074)
+.-.||++.+...... .+++.++.. +||++++.|||+|.|||++|+|++|+||+++|+.+|+++|+. .|++.+|++|
T Consensus 662 L~~~Fatq~k~~k~~e-~~eekkt~~-kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~-vLse~~iqnL 738 (1102)
T KOG1924|consen 662 LALKFATQPKVKKEQE-GGEEKKTGT-KKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNED-VLSESMIQNL 738 (1102)
T ss_pred HHHHhhcccccccccc-ccccccchh-hhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHH-HHHHHHHHHH
Confidence 9999998765443222 223322222 378889999999999999999999999999999999999995 9999999999
Q ss_pred HhcCCCHHHHHHHhhccC--CCCChHHHHHHHHhCCCchHHHHHHHHHHHhhHhhHHhhhHhHHHHHHHHHHHhhcHhHH
Q psy8075 724 LKFTPNTEEAALLEEHST--ETLARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTRSRRLR 801 (1074)
Q Consensus 724 lk~lPt~eE~~~l~~~~~--~~L~~aeqF~~~l~~ip~~~~RL~~l~fk~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~ 801 (1074)
++++|..|.+..|.+++. +.|.+.|||...|+.|+++..||.+++||.+|.+.+++|+|.|.+|++||++|++|++|.
T Consensus 739 ik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs 818 (1102)
T KOG1924|consen 739 IKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFS 818 (1102)
T ss_pred HHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCC-CCccceeccccccccccccCCCCCcchHHHHHHHHHHhhhhccchhhhhhhHHHhhcCCHH
Q psy8075 802 KLLELVLALGNYMNKGAR-GNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEVLKLEEDLCHVKEASKVSMK 880 (1074)
Q Consensus 802 ~lL~~IL~iGNymN~g~r-g~A~GFkL~sL~KL~dtKs~~d~k~TLLhylv~~v~~~~p~ll~f~~eL~~v~~Aakvs~~ 880 (1074)
++|++||++|||||+|+| .+||||.|++|+||.||||+ |+++||||||+++|+++||++++|++||.||++|+|||.+
T Consensus 819 ~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsa-Dqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad 897 (1102)
T KOG1924|consen 819 KLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSA-DQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNAD 897 (1102)
T ss_pred HHHHHHHHHhcccccccccchhhccchHHHHhhcccccc-chhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHH
Confidence 999999999999999965 79999999999999999996 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChh
Q psy8075 881 ELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPE 960 (1074)
Q Consensus 881 ~l~~d~~~l~~~l~~~~~el~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfGEd~~~~~~~ 960 (1074)
.|.+.+.++...++.++..+..... .....|+|.++|..|.+.|..++..|..++.+|++.|+++.+||..|+++++.+
T Consensus 898 ~ikK~~~~m~~~ik~Le~dlk~~~~-~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmE 976 (1102)
T KOG1924|consen 898 EIKKNLQQMENQIKKLERDLKNFKI-AGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSME 976 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHH
Confidence 9999999999999999999876543 346789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--CCCCcccHHHHHHHHhcCC
Q psy8075 961 DFFVIFDTFLTTLNEAKLDNENMKRRREEEEKRARQDAEMKKRTTDRKQGAKENGVVIS--NGSVKGEFDDLISALRTGD 1038 (1074)
Q Consensus 961 eFF~~~~~F~~~f~~a~~en~~~~~~~e~eekr~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~D~Ll~~Lr~G~ 1038 (1074)
|||+.+.+|.+.|..|..||++. ++++|.++|++.+.++++++..++++ +..+.++. .++++||||+||+||+||+
T Consensus 977 EFFaDi~tFrnaf~ea~~en~kr-Ree~Ek~rr~k~a~eqseqEr~erQq-rk~alIdm~a~~de~GVmDslLeaLqsga 1054 (1102)
T KOG1924|consen 977 EFFADIRTFRNAFLEAVAENEKR-REEEEKERRAKLAKEQSEQERLERQQ-RKKALIDMNAEGDETGVMDSLLEALQSGA 1054 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHhccccccchhhhHHHHHHHHHhhc
Confidence 99999999999999999988753 23344467777777776554445543 34444443 4899999999999999999
Q ss_pred CCCchhhhhhhhcc
Q psy8075 1039 VFGEDSIAKIKRSR 1052 (1074)
Q Consensus 1039 ~f~~~~~~~~~~~~ 1052 (1074)
+|+.+ =++..|++
T Consensus 1055 afr~r-rk~~prq~ 1067 (1102)
T KOG1924|consen 1055 AFRTR-RKRLPRQT 1067 (1102)
T ss_pred cccCc-ccccCCCC
Confidence 99977 23344433
No 2
>KOG1923|consensus
Probab=100.00 E-value=3.7e-86 Score=760.31 Aligned_cols=773 Identities=25% Similarity=0.364 Sum_probs=521.1
Q ss_pred HHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHHhccCCchhHHHHHHhhHHHHcccccchHHHHHHh
Q psy8075 180 IKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQRFCNERSRFQGIVNDL 259 (1074)
Q Consensus 180 lkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l 259 (1074)
|+|+|||.+|+..|+.||.+++.||.|+.+.|.+|+++|+++|++||++-|||+.+|.|++.|+.+|+|..||++++..+
T Consensus 1 laas~~~~~g~~~v~s~p~A~~~ia~S~~~~n~rtktsvl~~lasic~v~gg~E~~~~a~~~f~~v~qe~~rf~~lm~~~ 80 (830)
T KOG1923|consen 1 LAASMNNKAGFGQVGSVPPAIACIANSSKHTNLRTKTSVLGSLASICYVIGGSEQSWPAAPVFSKVNQEPRRFNTLMYVH 80 (830)
T ss_pred CCcccccccccCCCCCCchHHHHhhHhhccCCcchHHHHHHHHHHHHHHhcCceeecccCcchhhhhcCccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHhccCchHHHHHHHHHHHhHHhhHH
Q psy8075 260 DKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDES 339 (1074)
Q Consensus 260 ~~~~~~~~~~~~~~~a~m~lIN~lv~~~~~~~dl~~R~~lR~Ef~~~GL~~~l~~Lr~~~~~~L~~qi~~fe~~~~eDe~ 339 (1074)
... ...++++++|+|+|+|.+++ ++|++||+|+++||..+||+.+|+.++..+.+.+..|+..|-+.-.+-
T Consensus 81 s~~---~~fn~df~~a~lQf~~ifv~----v~d~n~rvhlQye~t~lgld~yi~~~~e~ese~l~~Q~~sy~dn~~dv-- 151 (830)
T KOG1923|consen 81 SLP---PFFNADFSAAKLQFYDVFVG----VPDENFRVHLQYEATHLGLDKYIDAPPENESEELQRQFQSYTDNLTDV-- 151 (830)
T ss_pred cCc---cccChHHHHHHHHHHHHHhc----chhhhhHHHhhhHHHHHhhhhhhhcchhhhhHHHHHHHHHHhhhHHHH--
Confidence 532 12478999999999999997 478999999999999999999999999999999999998875421100
Q ss_pred HHHhhhcCCccCCCCHHHHHHHHHHHhcCCCChhhHHHHHHHhccCCccCCCchhHHHHHHHHHHHHhhhcccCCCccch
Q psy8075 340 ELARKYETDHIETKSATSMFNILRRKLGHTAAYPHFLSLLHHCILLPLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHI 419 (1074)
Q Consensus 340 el~~~~~~~~~d~~~~~~v~~~l~~~~~~t~a~~~~lSiLQhLLli~~~~~~~~~~~~lld~~v~qivl~~~~g~d~d~~ 419 (1074)
.-++.+-.+ ...+.+++.+... .+.+-++.+.-..++. ..-++++
T Consensus 152 ---------~all~ds~~-k~~~le~v~~~~~--------------------~isher~~~v~~~~~s-----~~A~l~~ 196 (830)
T KOG1923|consen 152 ---------RALLRDSFQ-KTFVLEFVETPAD--------------------QISHERLQAVEMAQAS-----APAPLPG 196 (830)
T ss_pred ---------HHhcccchh-hhHHHHhhcchhh--------------------hhhHHHHHHHHHHHhc-----CcccCch
Confidence 000000000 0111222211100 0000111111111110 0011110
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy8075 420 LLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQ 499 (1074)
Q Consensus 420 ~l~~~v~~li~~l~~~~e~~~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~~~~~~~~~~~~ 499 (1074)
.+ ++...- .+.... ....+..+..-|+.-..+.++.+.+. ....+.
T Consensus 197 ~s-~sl~~e------r~~~~~---~~~~~~dels~m~k~~~~~e~~lk~~------------------------~~~l~~ 242 (830)
T KOG1923|consen 197 AS-SSLNKE------REPQSY---QRKALLDELSCMQKLSIEKERSLKAI------------------------ARLLET 242 (830)
T ss_pred hh-hhhhhh------hhHHHH---HHHHhcchhHHHHHHHHHHHHHHHHH------------------------HHhccC
Confidence 00 000000 000000 00000001111110000000000000 000011
Q ss_pred HHHHHHHHHHHhhhccchhh-----hhhhhhcccCCCCCCCCCcccCCCCC-CCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q psy8075 500 KVAELEDRISELKHRADFEQ-----DERKRLENLINSGSVPDDTKAVGLSR-SGGREEPSSPR-KPEAPSSCIPPPPPPA 572 (1074)
Q Consensus 500 ~~~~l~~~l~~l~~~~~~~~-----~~~~~~~~p~~~~~~p~~~~~~~~~~-~~~~~~ppppp-pppp~~~~ppppp~pg 572 (1074)
.+.+|+..-. ...++...+ ...+.+...+++|+.|+|+++.+... ..++++|||++ +|||+++.||+++.++
T Consensus 243 ki~emq~~ss-~~~~~~~~~~la~gs~asA~~s~~~S~s~ppppap~p~~~~~~a~p~p~~~~~~pPppp~~ppv~~ln~ 321 (830)
T KOG1923|consen 243 KIGEMQLASS-AKGQGIRAQILALGSLASACDSQPGSGSGPPPPAPLPHTAQSDAAPSPLRLRCSPPPPPPFPPVGPLNS 321 (830)
T ss_pred Cccccccccc-ccCCCCccchhhhhhhhhhcccCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 1111110000 000000000 00000111111222111111111100 11111111111 1111111111111121
Q ss_pred ----CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC-CCCCCC------CC-CCCCCCcccCcCCCcccccCccchhccC
Q psy8075 573 ----SLPPPPPPRR-SSDLPYLTCPRPLVRCRQPPR-SKLKSR------IP-RPYFPNVSVQVNGTIWTELDESKLYASM 639 (1074)
Q Consensus 573 ----~pPPPPpppp-~~~~pppp~~~~~~~~p~~~~-~~~~k~------~~-~p~~~lk~~~i~~TiW~~~~~~~~~~~l 639 (1074)
++|+||++|+ .+.+++|+||++.+-.|.+.. ..-+++ .| -||.++|+.++++|+|++++|+++.+.+
T Consensus 322 ~~s~~~p~pp~~p~l~~~~espvpp~~~~~~~a~~~a~~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~l 401 (830)
T KOG1923|consen 322 NLSSGAPQPPGVPFLLTFPESPVPPPQRLMIPAELFAATIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEAL 401 (830)
T ss_pred CCcCCCCCCCCCCcccCCCCCCCCCCcccccchHhHHHhhcCCCcccccCCCccccccCccccccchhhhhhHHHHHHhh
Confidence 2233333333 232222222211111111110 011122 22 2799999999999999999999999999
Q ss_pred CHHHHHHHhhhhccCCCCCCCCccccccccccccCccccccchhhhhhHHHHhccCCCCHHHHHHHHHcCCCCCCCCHHH
Q psy8075 640 ELEVVDKLFCAYQKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDM 719 (1074)
Q Consensus 640 d~~~lE~lF~~~~~~~~~~~~~~~~~~~~~k~kk~k~isvLD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~~L~~e~ 719 (1074)
|+++||+.|..-...+..-..+....+... |...+++++|.+|++|++|.++ ..+..++|+.||..+|.. .|+.+.
T Consensus 402 D~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~--ka~qk~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk-~L~~~~ 477 (830)
T KOG1923|consen 402 DFSRFEEQFKILKSNGQILDESSAVSKAMT--KAPQKRTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLK-ALSLEP 477 (830)
T ss_pred hHHHHHHHHHhhhcccchhhhHHHHHHHhh--hhhhhhhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhcccc-ccCCcH
Confidence 999999999973332211001100011111 4567899999999999999999 999999999999999996 999999
Q ss_pred HHHHHhcCCCHHHHHHHhhccC-----CCCChHHHHHHHHhCCCchHHHHHHHHHHHhhHhhHHhhhHhHHHHHHHHHHH
Q psy8075 720 LEQLLKFTPNTEEAALLEEHST-----ETLARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREV 794 (1074)
Q Consensus 720 l~~Llk~lPt~eE~~~l~~~~~-----~~L~~aeqF~~~l~~ip~~~~RL~~l~fk~~f~~~~~~l~~~l~~v~~A~~~l 794 (1074)
++.|.+++||++|...+++|.. +.|+..|+|++.++.|+|+.+|+..|-|+.+|.+.+..+.|++..++.|+..+
T Consensus 478 ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~ 557 (830)
T KOG1923|consen 478 VELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSL 557 (830)
T ss_pred HHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhH
Confidence 9999999999999999998865 78999999999999999999999999999999999999999999999999999
Q ss_pred hhcHhHHHHHHHHHHhccccCCCCCCCccceeccccccccccccCCCCCcchHHHHHHHHHHhhhhccchhhhhhhHHHh
Q psy8075 795 TRSRRLRKLLELVLALGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEVLKLEEDLCHVKEA 874 (1074)
Q Consensus 795 ~~S~~l~~lL~~IL~iGNymN~g~rg~A~GFkL~sL~KL~dtKs~~d~k~TLLhylv~~v~~~~p~ll~f~~eL~~v~~A 874 (1074)
++|.+|+.||++||+||||||++.||.||||+|++|.-|.+|||+ |.++|||||++-.++++||.+..|.+||..+++|
T Consensus 558 k~sr~lr~VleiILA~gNymns~kRg~ayGFklqslD~ll~tkSt-Dr~~tLlh~iv~~i~eklp~l~~F~~el~~~eKa 636 (830)
T KOG1923|consen 558 KESRKLRPVLEIILAFGNYMNSSKRGAAYGFKLQSLDSLLDTKST-DRSMTLLHYIVLTIAEKLPALQLFFSELDFVEKA 636 (830)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcccccccceeccccHHHhhccCC-ccceeeeehhhHHHHHhhHHHHhhHHHhhccchh
Confidence 999999999999999999999999999999999999999999995 9999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy8075 875 SKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDN 954 (1074)
Q Consensus 875 akvs~~~l~~d~~~l~~~l~~~~~el~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfGEd~ 954 (1074)
+.|+++.+..|+.+|.+|+...++|.+..-. | .+|++|+..+..++++|++.++.++..|+.++.||||.|
T Consensus 637 ~av~lesV~~Dv~eL~~g~~l~~kE~e~~~~------~---~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gesp 707 (830)
T KOG1923|consen 637 TAVQLESVLADVKELNAGMTLAEKETEREGL------D---VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESP 707 (830)
T ss_pred hhhhhhccchhHHHHHhHHHHHHHHHhhhcc------c---hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCC
Confidence 9999999999999999999999999876422 2 689999999999999999999999999999999999999
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----H-----HHH-----HHHHhhcccccccccc
Q psy8075 955 SSIQPEDFFVIFDTFLTTLNEAKLDNENMKRRR-EEEEKRARQDAE----M-----KKR-----TTDRKQGAKENGVVIS 1019 (1074)
Q Consensus 955 ~~~~~~eFF~~~~~F~~~f~~a~~en~~~~~~~-e~eekr~~~e~~----~-----~~~-----~~~~~~~~~~~~~~~~ 1019 (1074)
++.+|..||..|..|+..|+++..+|+..++.+ ...+++...++. + +.+ ++.+|++.+......
T Consensus 708 k~tppt~ff~~f~~F~~~~k~~~~ene~k~~le~A~qe~~~~k~~~~~~~ks~a~~~~~q~~li~El~r~q~~~~~~l~- 786 (830)
T KOG1923|consen 708 KTTPPTVFFQLFVRFVRAYKMARQENEQKKKLEAALQEARAEKEAEREAAKSSAHPKLQQAALIRELKRRQIKETSNLA- 786 (830)
T ss_pred CCCCCCccHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhccccccccccCCCchhhhHHHHHHHHHHhccccccccc-
Confidence 999999999999999999999999998765422 222232211111 0 000 122222333333332
Q ss_pred CCCCcccHHHHHHHHhcCCCCCchhhhhhh
Q psy8075 1020 NGSVKGEFDDLISALRTGDVFGEDSIAKIK 1049 (1074)
Q Consensus 1020 ~~~~~g~~D~Ll~~Lr~G~~f~~~~~~~~~ 1049 (1074)
.++.|.|+|++..|++|---+.| ++++
T Consensus 787 -~~~~g~~edi~~glk~~P~~R~~--s~r~ 813 (830)
T KOG1923|consen 787 -SDDHGAFEDIITGLKSGPYRRAD--SKRR 813 (830)
T ss_pred -ccccccHHHHhhchhcCcchhhh--ccCc
Confidence 23889999999999999543333 4444
No 3
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=3.6e-69 Score=633.37 Aligned_cols=413 Identities=36% Similarity=0.583 Sum_probs=351.3
Q ss_pred CCCCCCcccCcCCCcccccCccchhccCCHHHHHHHhhhhccCCCCCCCCccccccccccccCccccccchhhhhhHHHH
Q psy8075 612 RPYFPNVSVQVNGTIWTELDESKLYASMELEVVDKLFCAYQKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTIL 691 (1074)
Q Consensus 612 ~p~~~lk~~~i~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~~~~~k~kk~k~isvLD~kraqNi~I~ 691 (1074)
-.|.++...++.+|||+++++.. .+|+++||++|+++......+. ..++.....++++++.++|||+||||||+|+
T Consensus 13 l~W~ki~~~~~~~tvW~~i~~~~---~~d~~~lE~lF~~k~~~~~~~~-~~~~~~~~~~~~~~~~v~ild~krs~ni~I~ 88 (432)
T smart00498 13 LHWDKLNPLDPRGTVWDKIDENS---EGDLDELEELFAAKEKTKSASK-DVSEKKSILKKKVSQEFKILDPKRSQNLAIL 88 (432)
T ss_pred cCceeCCCccccCChhhhcCccc---ccCHHHHHHHhCcCccccCccc-cccccccccccccccceEeechhHHhhHHHH
Confidence 35788888889999999999873 7899999999998654332111 1111111111245677999999999999999
Q ss_pred hccCCCCHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCCHHHHHHHhhccC---CCCChHHHHHHHHhCCCchHHHHHHHH
Q psy8075 692 LSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLEEHST---ETLARADRFLYEISKIPHYEQRLRCLH 768 (1074)
Q Consensus 692 L~~lk~~~~ei~~aI~~~D~~~~L~~e~l~~Llk~lPt~eE~~~l~~~~~---~~L~~aeqF~~~l~~ip~~~~RL~~l~ 768 (1074)
|++|++++++|++||++||.. .|+.+.|+.|++++||.||+..|++|.+ +.|++||||++.|+.||++.+||+||+
T Consensus 89 L~~l~~~~~ei~~ai~~~d~~-~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~Rl~~~~ 167 (432)
T smart00498 89 LRKLHMSYEEICEAILEGDED-VLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEERLNALL 167 (432)
T ss_pred HHhcCCCHHHHHHHHHhcChh-hCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999994 9999999999999999999999999987 689999999999999999999999999
Q ss_pred HHHhhHhhHHhhhHhHHHHHHHHHHHhhcHhHHHHHHHHHHhccccCCC-CCCCccceeccccccccccccCCCCCcchH
Q psy8075 769 YKKRFHFWISDIEPKIKSVMEASREVTRSRRLRKLLELVLALGNYMNKG-ARGNASGFRLTSLNKLVDTKSSSSRGVTLL 847 (1074)
Q Consensus 769 fk~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~IL~iGNymN~g-~rg~A~GFkL~sL~KL~dtKs~~d~k~TLL 847 (1074)
|+.+|++.++++.+.+..+..||++|++|++|+.||++||++|||||+| .||+|+||+|+||.||.||||+ |+++|||
T Consensus 168 f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~-d~k~tLL 246 (432)
T smart00498 168 FKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSA-DNKTTLL 246 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhcc-CCCccHH
Confidence 9999999999999999999999999999999999999999999999999 7899999999999999999997 8999999
Q ss_pred HHHHHHHHHhhhhccchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHH
Q psy8075 848 HYLVELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATC 927 (1074)
Q Consensus 848 hylv~~v~~~~p~ll~f~~eL~~v~~Aakvs~~~l~~d~~~l~~~l~~~~~el~~~~~~~~~~~D~f~~~m~~F~~~a~~ 927 (1074)
|||+++|++++|+++.|.+||++|..|++|| ++|.+++++|.++++.++.++..... +.+.+|.|..+|.+|+..|..
T Consensus 247 hylv~~i~~~~p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~-~~~~~d~f~~~m~~F~~~a~~ 324 (432)
T smart00498 247 HFLVKIIRKKYPDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSD-PENLDDKFIEVMKPFLKAAKE 324 (432)
T ss_pred HHHHHHHHHhChhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC-CCCccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999877654433 224469999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy8075 928 RLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEAKLDNENMKRRREEEEKRARQDAEMKKRTT-D 1006 (1074)
Q Consensus 928 ~~~~L~~~~~~~~~~~~~l~~yfGEd~~~~~~~eFF~~~~~F~~~f~~a~~en~~~~~~~e~eekr~~~e~~~~~~~~-~ 1006 (1074)
++..|+..+.++...|.+++.||||++++.++++||++|.+|+..|.+|+++|.+ +++++++++++..++..+... .
T Consensus 325 ~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~--~~~~e~~~~~~~~~~~~~~~~~~ 402 (432)
T smart00498 325 KYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIK--KEEEEEERRKQLVKETTEYEQSS 402 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999989999999999999999999998753 344444444433333321111 0
Q ss_pred Hhhccccccccc--cCCCCcccHHHHHHHHh
Q psy8075 1007 RKQGAKENGVVI--SNGSVKGEFDDLISALR 1035 (1074)
Q Consensus 1007 ~~~~~~~~~~~~--~~~~~~g~~D~Ll~~Lr 1035 (1074)
.++ +..+...+ ...+..|+||+++.+++
T Consensus 403 ~~~-~~~~~~~~~~~~~d~~~~~d~~~~~~~ 432 (432)
T smart00498 403 SRQ-KERNPSMDFEVERDFLGVLDSLLEELG 432 (432)
T ss_pred hhh-hhccchhhhhhhhhhhhhHHHHHHhhC
Confidence 111 11112111 23678899999998874
No 4
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=4.7e-62 Score=565.55 Aligned_cols=353 Identities=37% Similarity=0.672 Sum_probs=314.1
Q ss_pred CCCCCcccCcCCCcccccCccchhccCCHHHHHHHhhhhccCCCCCCCCccccccccccccCccccccchhhhhhHHHHh
Q psy8075 613 PYFPNVSVQVNGTIWTELDESKLYASMELEVVDKLFCAYQKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILL 692 (1074)
Q Consensus 613 p~~~lk~~~i~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~~~~~k~kk~k~isvLD~kraqNi~I~L 692 (1074)
.|.++...++.+|||+++++......+|++++|++|+.+........ ......++++.++|||++|+|||+|+|
T Consensus 15 ~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~------~~~~~~~~~~~~~iLd~kr~~ni~I~L 88 (370)
T PF02181_consen 15 HWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKK------KQASKKKKKKKISILDPKRSQNIGIVL 88 (370)
T ss_dssp ---EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH----------HCCCCTTCCESSS-HHHHHHHHHHH
T ss_pred CceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccc------cccccccccccccccchHHHHHHHHHh
Confidence 46777778999999999998876668999999999997644321100 011223677889999999999999999
Q ss_pred ccCCCCHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCCHHHHHHHhhccC--CCCChHHHHHHHHhCCCchHHHHHHHHHH
Q psy8075 693 SKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLEEHST--ETLARADRFLYEISKIPHYEQRLRCLHYK 770 (1074)
Q Consensus 693 ~~lk~~~~ei~~aI~~~D~~~~L~~e~l~~Llk~lPt~eE~~~l~~~~~--~~L~~aeqF~~~l~~ip~~~~RL~~l~fk 770 (1074)
++|++++++|+++|.+||. ..|+.|.|+.|++++||+||++.+++|.+ +.|++||+|++.|+.||++..||+||+|+
T Consensus 89 ~~~~~~~~~l~~ai~~~d~-~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~~rl~~~~~~ 167 (370)
T PF02181_consen 89 KKFKLSPEELIQAILNLDE-EVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRLKERLEALLFK 167 (370)
T ss_dssp HHHTS-HHHHHHHHHTTTT-CCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHccCc-cccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 49999999999999999999999999988 99999999999999999999999999999
Q ss_pred HhhHhhHHhhhHhHHHHHHHHHHHhhcHhHHHHHHHHHHhccccCCC-CCCCccceeccccccccccccCCCCCcchHHH
Q psy8075 771 KRFHFWISDIEPKIKSVMEASREVTRSRRLRKLLELVLALGNYMNKG-ARGNASGFRLTSLNKLVDTKSSSSRGVTLLHY 849 (1074)
Q Consensus 771 ~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~IL~iGNymN~g-~rg~A~GFkL~sL~KL~dtKs~~d~k~TLLhy 849 (1074)
.+|++.++++.+.+..+..||++|++|++|+.+|++||++|||||+| .||+|+||+|++|.||.+|||+ |+++|||||
T Consensus 168 ~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~-d~~~tLL~~ 246 (370)
T PF02181_consen 168 SEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSN-DNKTTLLHY 246 (370)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-S-TTTSBHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccc-cCCchHHHH
Confidence 99999999999999999999999999999999999999999999999 6799999999999999999997 899999999
Q ss_pred HHHHHHHhhhhccchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHH
Q psy8075 850 LVELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRL 929 (1074)
Q Consensus 850 lv~~v~~~~p~ll~f~~eL~~v~~Aakvs~~~l~~d~~~l~~~l~~~~~el~~~~~~~~~~~D~f~~~m~~F~~~a~~~~ 929 (1074)
|++++.+++|+++.|.+||++|..|++++++++.+++.+|++++..++.+++.... ..+.+|.|...|.+|+..+..++
T Consensus 247 l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~-~~~~~~~f~~~~~~f~~~~~~~~ 325 (370)
T PF02181_consen 247 LVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEK-DEEDDDKFKEKMKEFLEEAETKL 325 (370)
T ss_dssp HHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT-TSSTT-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-cccchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987654 33678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHHHHHH
Q psy8075 930 SEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLN 974 (1074)
Q Consensus 930 ~~L~~~~~~~~~~~~~l~~yfGEd~~~~~~~eFF~~~~~F~~~f~ 974 (1074)
..|+..+.++++.|++++.|||||++++++++||++|.+|+..|+
T Consensus 326 ~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 326 DELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999985
No 5
>KOG1925|consensus
Probab=100.00 E-value=3.9e-46 Score=408.34 Aligned_cols=343 Identities=21% Similarity=0.347 Sum_probs=302.4
Q ss_pred cCcCCCcccccCccchhccCCHHHHHHHhhhhccCCCCCCCCccccccccccccCccccccchhhhhhHHHHhccCCCCH
Q psy8075 620 VQVNGTIWTELDESKLYASMELEVVDKLFCAYQKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILLSKLKMTD 699 (1074)
Q Consensus 620 ~~i~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~~~~~k~kk~k~isvLD~kraqNi~I~L~~lk~~~ 699 (1074)
.+-.+|+|+.+|... +|...|+.+|..+.++..+.++.++ -|....+|||.||+|.|+|-|.++. +.
T Consensus 303 ~r~~~t~W~s~D~~~----~D~~r~~~LFEsr~~~~~P~KK~~E--------~r~~~~tVL~~KRt~AINIGLT~LP-Pv 369 (817)
T KOG1925|consen 303 SRPCATLWASLDPVS----VDTARLEHLFESRAKEVLPSKKAGE--------GRRTMTTVLDPKRTNAINIGLTTLP-PV 369 (817)
T ss_pred ccccchhhhccCcce----ecHHHHHHHHHHhhhhhccchhhcc--------cceeeeeecCcccccceeeccccCC-ch
Confidence 455789999998764 6899999999876443322111111 2445689999999999999999987 56
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHhcCCCHHHHHHHhhccC----CCCChHHHHHHHHhCCCchHHHHHHHHHHHhhHh
Q psy8075 700 EEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLEEHST----ETLARADRFLYEISKIPHYEQRLRCLHYKKRFHF 775 (1074)
Q Consensus 700 ~ei~~aI~~~D~~~~L~~e~l~~Llk~lPt~eE~~~l~~~~~----~~L~~aeqF~~~l~~ip~~~~RL~~l~fk~~f~~ 775 (1074)
.-|..||+++|+- .++.|-|+.|++++||++|++.|+...- -.|+.||||++.|++|+.+..||+.|.|+..|+.
T Consensus 370 ~VI~AA~~~FD~~-~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~L~aRL~LWaFklDY~~ 448 (817)
T KOG1925|consen 370 HVIKAALLNFDEF-AVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGGLAARLQLWAFKLDYDS 448 (817)
T ss_pred hhhHHHHhcchhh-hcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHHHHHHHHHHhhhcccch
Confidence 7899999999995 8999999999999999999999986543 6899999999999999999999999999999999
Q ss_pred hHHhhhHhHHHHHHHHHHHhhcHhHHHHHHHHHHhccccCCCCCCCccceeccccccccccccCCCCCcchHHHHHHHHH
Q psy8075 776 WISDIEPKIKSVMEASREVTRSRRLRKLLELVLALGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAE 855 (1074)
Q Consensus 776 ~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~IL~iGNymN~g~rg~A~GFkL~sL~KL~dtKs~~d~k~TLLhylv~~v~ 855 (1074)
.-.+|-..+-.+..|.+++.+|..|+-+|.++|+||||+|+. ++.||.|+.|.|..++|+++ .|+||||+++.++-
T Consensus 449 ~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT---~~KgFeLsYLeKvsEVKDtV-~KqsLlhHlc~~vV 524 (817)
T KOG1925|consen 449 MEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT---QSKGFELSYLEKVSEVKDTV-RKQSLLHHLCSLVV 524 (817)
T ss_pred hhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc---cccceehHhhhhchhhcchH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985 69999999999999999974 78999999999999
Q ss_pred HhhhhccchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy8075 856 KRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRLSEIEDL 935 (1074)
Q Consensus 856 ~~~p~ll~f~~eL~~v~~Aakvs~~~l~~d~~~l~~~l~~~~~el~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~ 935 (1074)
++||+-.+++.|+..|...++|+++++...+.+|.+.++.-...|....+.. -.......|..|+.++..++..|...
T Consensus 525 E~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe--~~p~l~~r~~~fl~~cA~RI~~LKiv 602 (817)
T KOG1925|consen 525 ETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHE--LAPALRARLTHFLDQCARRIAMLKIV 602 (817)
T ss_pred HhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988887776654321 12235678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCC---CChhhhHHHHHHHHHHHHHHHHHHHH
Q psy8075 936 FQDMKTRFDRAVRLFGEDNSS---IQPEDFFVIFDTFLTTLNEAKLDNEN 982 (1074)
Q Consensus 936 ~~~~~~~~~~l~~yfGEd~~~---~~~~eFF~~~~~F~~~f~~a~~en~~ 982 (1074)
+..+.+.|.+.+.|||..+.. ..+++||.++..|.-.|+..+..+.+
T Consensus 603 hrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFaLEYRTTRervLQ 652 (817)
T KOG1925|consen 603 HRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFALEYRTTRERVLQ 652 (817)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999998764 57899999999999999998875544
No 6
>KOG1922|consensus
Probab=100.00 E-value=6e-41 Score=425.78 Aligned_cols=369 Identities=34% Similarity=0.547 Sum_probs=314.9
Q ss_pred CCCCcccCcCCCcccccCccchhccC-CHHHHHHHhhhhccCCCCCCCCc-cccccccccccCccccccchhhhhhHHHH
Q psy8075 614 YFPNVSVQVNGTIWTELDESKLYASM-ELEVVDKLFCAYQKNGVPADGSV-EDLTKLGKISKSKILSVIDGRRAQNCTIL 691 (1074)
Q Consensus 614 ~~~lk~~~i~~TiW~~~~~~~~~~~l-d~~~lE~lF~~~~~~~~~~~~~~-~~~~~~~k~kk~k~isvLD~kraqNi~I~ 691 (1074)
|..++.......+|+.+++...+... ..+..|.+|...........++. ...... -..+.++|+|++++||++|+
T Consensus 401 wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~r~~~n~~il 477 (833)
T KOG1922|consen 401 WDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTA---VEKKRLKVLDPRRPQNIAIL 477 (833)
T ss_pred ccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccc---cccccccccCCCCccceeee
Confidence 44455577789999999887654222 22778888876532221110000 000111 12256899999999999999
Q ss_pred hccCCCCHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCCHHHHHHHhhccC--CCCChHHHHHHH-HhCCCchHHHHHHHH
Q psy8075 692 LSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLEEHST--ETLARADRFLYE-ISKIPHYEQRLRCLH 768 (1074)
Q Consensus 692 L~~lk~~~~ei~~aI~~~D~~~~L~~e~l~~Llk~lPt~eE~~~l~~~~~--~~L~~aeqF~~~-l~~ip~~~~RL~~l~ 768 (1074)
|+.++++.+++..+|+.+|+. .+..+.|+.|.++.|+++|...++.|.+ ..|+.+|+|+.+ +..||.+..|++++.
T Consensus 478 l~sl~~~~~~~~~a~~~~~~~-~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~~~~~~~~ 556 (833)
T KOG1922|consen 478 LSSLNMPTEDIPQALLELDDS-VLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFEERLQALS 556 (833)
T ss_pred hhhcCCchHHHHHHHhccCcc-ccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHHHHHHHhh
Confidence 999999999999999999995 8999999999999999999999999988 599999999887 677999999999999
Q ss_pred HHHhhHhhHHhhhHhHHHHHHHHHHHhhcHhHHHHHHHHHHhccccCCC-CCCCccceeccccccccccccCCCCCcch-
Q psy8075 769 YKKRFHFWISDIEPKIKSVMEASREVTRSRRLRKLLELVLALGNYMNKG-ARGNASGFRLTSLNKLVDTKSSSSRGVTL- 846 (1074)
Q Consensus 769 fk~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~IL~iGNymN~g-~rg~A~GFkL~sL~KL~dtKs~~d~k~TL- 846 (1074)
|+..|...+..+.+.+..+..||.+++++.+|.+++++||..|||||.| .||+|+||+|++|.||.|+|+. ++++++
T Consensus 557 f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~-~~~~~~l 635 (833)
T KOG1922|consen 557 FRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSS-DGKTTLL 635 (833)
T ss_pred hhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhcc-cccchhh
Confidence 9999999999999999999999999999999999999999999999999 8899999999999999999996 677655
Q ss_pred HHHHHHHHHHhh---------------hhccchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCC
Q psy8075 847 LHYLVELAEKRF---------------KEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIE-FQRVQPLVP 910 (1074)
Q Consensus 847 Lhylv~~v~~~~---------------p~ll~f~~eL~~v~~Aakvs~~~l~~d~~~l~~~l~~~~~el~-~~~~~~~~~ 910 (1074)
+||+.++++... |.+.+|.+||..|..|++++++.+.+++.+|.+++..+.+.+. .......+.
T Consensus 636 ~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 715 (833)
T KOG1922|consen 636 HFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTASKNESLPP 715 (833)
T ss_pred hhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Confidence 455556666554 4779999999999999999999999999999999999999995 433333457
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 911 GDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDN-SSIQPEDFFVIFDTFLTTLNEAKLDNENMKRRR 987 (1074)
Q Consensus 911 ~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfGEd~-~~~~~~eFF~~~~~F~~~f~~a~~en~~~~~~~ 987 (1074)
.|.|..+|.+|+..|..++..+...+..+...+.++++|||+++ ...++.+||.++..|+..|+++++|+..+.+++
T Consensus 716 ~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~~~~~~~~e~~~~~~k~ 793 (833)
T KOG1922|consen 716 GDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLRTFDKAHEENKKAEEKE 793 (833)
T ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999 578899999999999999999999987765443
No 7
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=100.00 E-value=1.3e-34 Score=304.09 Aligned_cols=173 Identities=41% Similarity=0.690 Sum_probs=138.4
Q ss_pred CCCChhhHHHHHHHHHHhcCCChhHHHhhcCCChHHHHHHHHhhcccccCC----------CCCCCChHHHHHHHhcccC
Q psy8075 42 PIPPTNELNTMFEELVEELDLTAPNKAAMLSLPDEKKWQIYCSRKMDQTST----------TDAPDNPEQYIEQLRNFKS 111 (1074)
Q Consensus 42 ~~P~~~ei~~~F~~ll~~~nl~~~~~~~m~~~~~ekKw~li~~~~~~~~~~----------~~~~~~P~~yi~~L~~~~~ 111 (1074)
|||++++||++|++||++||+++++|+.|+++|.++||+||++++..+... .....+|++||++|++..
T Consensus 1 ~~p~~~~v~~~F~~ll~~~~~~~~~r~~l~~~~~ekKw~li~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~L~~~~- 79 (187)
T PF06371_consen 1 PMPSEEEVDEMFEELLEELNLPEEKRKELRNLPPEKKWQLIQQHRQKQAKHSSSSSKSKSKASAKSSPEWYIKKLKSRP- 79 (187)
T ss_dssp --------HHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHHHHHHH-----------------CHHHHHHHHHHTTT--
T ss_pred CCCCHHHHHHHHHHHHHhcCCCHHHHHHHHCCCHHHHHHHHHhHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHccC-
Confidence 689999999999999999999999999999999999999999987644321 134578999999998633
Q ss_pred CCCCCCChhhhhhHHHHHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhcccccC----CcchhHHHHHHHHHHhcCh
Q psy8075 112 SPLTEHDDTEIKSRTRILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSG----QTSLHSSIIGCIKALMNNS 187 (1074)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~----~~~~~~~~l~ClkalmN~~ 187 (1074)
...+.|.+|+|+|||++++||++|++.+|+.+|+++|..+..... +..++++||+|||||||++
T Consensus 80 ------------~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~ 147 (187)
T PF06371_consen 80 ------------STSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK 147 (187)
T ss_dssp -------------HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH
T ss_pred ------------ccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH
Confidence 123899999999999999999999999999999999998875443 3367999999999999999
Q ss_pred hhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHHhc
Q psy8075 188 TGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCL 227 (1074)
Q Consensus 188 ~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~ 227 (1074)
+|+..|+.++++|..|+.||++++++||.+|+|||+++|+
T Consensus 148 ~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 148 YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALCL 187 (187)
T ss_dssp HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999996
No 8
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=100.00 E-value=7e-33 Score=293.46 Aligned_cols=194 Identities=34% Similarity=0.606 Sum_probs=168.2
Q ss_pred CchhHHHHHHhhHHHHcccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCcH
Q psy8075 230 GGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQ 309 (1074)
Q Consensus 230 ~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~~~~~~dl~~R~~lR~Ef~~~GL~ 309 (1074)
|||.+||+||++|+..++|+.||++||+.|... ....++|+++||.|||+||++ ++|+++|+|||+||.++||.
T Consensus 1 ~G~~~vl~a~~~~~~~~~e~~RF~~lv~~l~~~---~~~~~e~~~~~l~~IN~li~~---~~d~~~R~~lr~e~~~~GL~ 74 (197)
T PF06367_consen 1 GGHEKVLEAFDNFKEVKGERGRFQSLVGALESV---DSSDIEYKTACLQFINSLINS---PEDLNFRVHLRNEFERLGLL 74 (197)
T ss_dssp -HHHHHHHHHHHHHHHHT-S-TTHHHHHHCS-----TTS-HHHHHHHHHHHHHHHTT----SSHHHHHHHHHHHHHTTHH
T ss_pred ChHHHHHHHHHHHHHHhCCcccHHHHHHHHHcc---ccCcHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCcH
Confidence 699999999999999999999999999999752 124689999999999999997 57999999999999999999
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhHHhhHHHHHhhhcCCccCCCCHHHHHHHHHHHhcCCCChhhHHHHHHHhccCCccC
Q psy8075 310 PIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMFNILRRKLGHTAAYPHFLSLLHHCILLPLEF 389 (1074)
Q Consensus 310 ~~l~~Lr~~~~~~L~~qi~~fe~~~~eDe~el~~~~~~~~~d~~~~~~v~~~l~~~~~~t~a~~~~lSiLQhLLli~~~~ 389 (1074)
+++++|+..+++.|+.||++|++..++|++++.++++...+++++|.+||+.|..++++|+++.+|+|+|||||+++.+.
T Consensus 75 ~il~~l~~~~~~~L~~Qi~~f~~~~~~D~~el~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~siLq~ll~i~~~~ 154 (197)
T PF06367_consen 75 DILEKLRNLEDDDLQEQIDIFEENEEEDEEELLERFDSKTVDLSDPQELFEALLEKLKDTEAEDYFLSILQHLLLIRQDE 154 (197)
T ss_dssp HHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHTTSTTHHHHHHHHHHHTTS-TTT
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999998888
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCCccch---hhhhhHHHHHH
Q psy8075 390 GCHPQHWLLLDRLAQQLTLQTETGEDYDHI---LLKINVKKVVH 430 (1074)
Q Consensus 390 ~~~~~~~~lld~~v~qivl~~~~g~d~d~~---~l~~~v~~li~ 430 (1074)
..+.++|++||++++||+++ +.+.|+|+. .++++|+.++|
T Consensus 155 ~~~~~~~~lie~~v~~i~~~-~~~~~~~~~~~~~l~~~i~~L~d 197 (197)
T PF06367_consen 155 EERSKYWQLIESLVSQIVLD-RKGIDPDDDEQSSLEIDINRLLD 197 (197)
T ss_dssp TTHHHHHHHHHHHHHHHHSS-GGGS-S-TTSS-EEEEEHSCSHH
T ss_pred hHHHHHHHHHHHHHHHHHHh-ccccCchHHHhhhHHHHHHHhcC
Confidence 88999999999999999998 566677542 35566665543
No 9
>KOG1924|consensus
Probab=99.72 E-value=8.8e-14 Score=161.76 Aligned_cols=92 Identities=14% Similarity=0.242 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCCCCCChhhh
Q psy8075 886 MTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRLSEIEDLFQD---MKTRFDRAVRLFGEDNSSIQPEDF 962 (1074)
Q Consensus 886 ~~~l~~~l~~~~~el~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~---~~~~~~~l~~yfGEd~~~~~~~eF 962 (1074)
+..+++.+..++..+......... .--+-..=..|.+....-.+...++|.. |....+++-+-.||--. +++..+
T Consensus 896 ad~ikK~~~~m~~~ik~Le~dlk~-~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYya-Fd~kky 973 (1102)
T KOG1924|consen 896 ADEIKKNLQQMENQIKKLERDLKN-FKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYA-FDPKKY 973 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHee-cCcccC
Confidence 445666666666665544322110 0000001123554444444444444433 33333333333444321 233221
Q ss_pred HHHHHHH---HHHHHHHHHHHH
Q psy8075 963 FVIFDTF---LTTLNEAKLDNE 981 (1074)
Q Consensus 963 F~~~~~F---~~~f~~a~~en~ 981 (1074)
.+..| +..|+.|..+..
T Consensus 974 --smEEFFaDi~tFrnaf~ea~ 993 (1102)
T KOG1924|consen 974 --SMEEFFADIRTFRNAFLEAV 993 (1102)
T ss_pred --cHHHHHHHHHHHHHHHHHHH
Confidence 23444 566777777544
No 10
>KOG1923|consensus
Probab=97.64 E-value=0.0016 Score=78.33 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=9.5
Q ss_pred cCcCCCcccccCccc
Q psy8075 620 VQVNGTIWTELDESK 634 (1074)
Q Consensus 620 ~~i~~TiW~~~~~~~ 634 (1074)
.+..-.-|..+....
T Consensus 369 ~~~p~lnW~alKP~q 383 (830)
T KOG1923|consen 369 TKSPSLNWLALKPIQ 383 (830)
T ss_pred ccCCCccccccCccc
Confidence 445567788876544
No 11
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=96.93 E-value=0.001 Score=86.79 Aligned_cols=6 Identities=17% Similarity=1.210 Sum_probs=3.0
Q ss_pred Cccccc
Q psy8075 625 TIWTEL 630 (1074)
Q Consensus 625 TiW~~~ 630 (1074)
.+|..+
T Consensus 1763 s~W~Ri 1768 (2039)
T PRK15319 1763 SVWARF 1768 (2039)
T ss_pred CeEEEE
Confidence 455544
No 12
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=96.83 E-value=0.00064 Score=39.04 Aligned_cols=15 Identities=47% Similarity=0.802 Sum_probs=13.1
Q ss_pred ccHHHHHHHHhcCCC
Q psy8075 1025 GEFDDLISALRTGDV 1039 (1074)
Q Consensus 1025 g~~D~Ll~~Lr~G~~ 1039 (1074)
||||+||+||++|.+
T Consensus 1 gvmdsllealqtg~a 15 (15)
T PF06345_consen 1 GVMDSLLEALQTGSA 15 (15)
T ss_dssp -HHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHccCC
Confidence 799999999999974
No 13
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.80 E-value=0.04 Score=55.90 Aligned_cols=148 Identities=17% Similarity=0.218 Sum_probs=97.4
Q ss_pred hhhHHHhhhcCcHHHHHHHHHhccc-ccCCcchhHHHHHHHHHHhcChh-hHHHhhcCccHHHHHHHhhcCCC--hhhHH
Q psy8075 141 HSFVLRFIECEGLLTLLEYLKNLDH-YSGQTSLHSSIIGCIKALMNNST-GRSHVLGYPGAIDIIAQSLSTEN--IKTKI 216 (1074)
Q Consensus 141 ~~Wv~~Fi~~~Gl~~L~~~L~~~~~-~~~~~~~~~~~l~ClkalmN~~~-G~~~vl~~~~~i~~la~sL~s~~--~~tr~ 216 (1074)
+.|-.||+..+|+..|+.+++.-.. ......+...++.|+--||.... |-+ . -.+.+|..+|.-++.+. ..+-.
T Consensus 1 ~TFA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~-l~~~FI~Kia~~Vn~~~~d~~i~q 78 (160)
T PF11841_consen 1 VTFAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-T-LSDSFIKKIASYVNSSAMDASILQ 78 (160)
T ss_pred CchHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-h-ccHHHHHHHHHHHccccccchHHH
Confidence 4678999999999999999876332 11122344557899999998533 333 2 24557888888777554 55666
Q ss_pred HHHHHHHHHhcc-CCchhHHHHHHhhHHHHcccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHH
Q psy8075 217 AVLEILGAVCLI-PGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEF 295 (1074)
Q Consensus 217 ~v~elLaavc~~-~~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~~~~~~dl~~ 295 (1074)
.++.||=-+++. +.+|..|-+ .-.+..++..|..+ +.++++.+|.|||+|.--+ ++ +-
T Consensus 79 ~sLaILEs~Vl~S~~ly~~V~~-----------evt~~~Li~hLq~~------~~~iq~naiaLinAL~~kA---~~-~~ 137 (160)
T PF11841_consen 79 RSLAILESIVLNSPKLYQLVEQ-----------EVTLESLIRHLQVS------NQEIQTNAIALINALFLKA---DD-SK 137 (160)
T ss_pred HHHHHHHHHHhCCHHHHHHHhc-----------cCCHHHHHHHHHcC------CHHHHHHHHHHHHHHHhcC---Ch-HH
Confidence 677777544443 344555533 33478899998753 5678899999999999752 22 45
Q ss_pred HHHHHHHHHHhCcHHH
Q psy8075 296 RLHLRYEVIMLGIQPI 311 (1074)
Q Consensus 296 R~~lR~Ef~~~GL~~~ 311 (1074)
|-.+..-|..-.+..+
T Consensus 138 r~~i~~~l~~k~~R~~ 153 (160)
T PF11841_consen 138 RKEIAETLSQKQIRQV 153 (160)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6556655555555443
No 14
>KOG3671|consensus
Probab=96.30 E-value=0.015 Score=67.16 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=6.8
Q ss_pred HHHHHhccCCcc
Q psy8075 377 SLLHHCILLPLE 388 (1074)
Q Consensus 377 SiLQhLLli~~~ 388 (1074)
++++|+-.+.-+
T Consensus 240 tnf~h~~hVgwd 251 (569)
T KOG3671|consen 240 TNFPHIPHVGWD 251 (569)
T ss_pred CCCccccccCCC
Confidence 355666665544
No 15
>PHA03247 large tegument protein UL36; Provisional
Probab=95.28 E-value=0.075 Score=71.94 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=8.6
Q ss_pred HHHHHHHhCcHHHHH
Q psy8075 299 LRYEVIMLGIQPIID 313 (1074)
Q Consensus 299 lR~Ef~~~GL~~~l~ 313 (1074)
.++|+|..=|..+++
T Consensus 2114 ~QhEYM~kTL~~a~~ 2128 (3151)
T PHA03247 2114 LQHEYMHLTLPAAWE 2128 (3151)
T ss_pred HHHHHHHHhHHHHHH
Confidence 456666665555554
No 16
>PHA03247 large tegument protein UL36; Provisional
Probab=95.07 E-value=0.087 Score=71.37 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q psy8075 451 ENVDLSNRLAKK 462 (1074)
Q Consensus 451 e~~eL~~kl~~~ 462 (1074)
|+..|..||+++
T Consensus 2371 ENACL~~QLe~L 2382 (3151)
T PHA03247 2371 ENACLAAQLPAL 2382 (3151)
T ss_pred HHHHHHHHHHHH
Confidence 345555566554
No 17
>KOG1922|consensus
Probab=95.03 E-value=1.6 Score=56.89 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=49.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCC--CChhhhHHHHHHHHHHHHHHHHHH
Q psy8075 912 DRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFG-EDNSS--IQPEDFFVIFDTFLTTLNEAKLDN 980 (1074)
Q Consensus 912 D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfG-Ed~~~--~~~~eFF~~~~~F~~~f~~a~~en 980 (1074)
..|...+......|.-.++.+......+.+.+..+..+|+ ..... ...+.|...+..|+.....-.+.+
T Consensus 666 ~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l 737 (833)
T KOG1922|consen 666 LKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLL 737 (833)
T ss_pred hcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHH
Confidence 3455566666677777888888888888889999988886 22211 134789999999988776655543
No 18
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.57 E-value=0.021 Score=70.84 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=4.3
Q ss_pred HHHHHHhCC
Q psy8075 944 DRAVRLFGE 952 (1074)
Q Consensus 944 ~~l~~yfGE 952 (1074)
+.++.+|||
T Consensus 735 rtiLQHlsE 743 (2365)
T COG5178 735 RTILQHLSE 743 (2365)
T ss_pred HHHHHHHHH
Confidence 344455544
No 19
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.31 E-value=0.78 Score=54.17 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=10.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q psy8075 432 LAKEEEIVAAKKKADELEMENVDL 455 (1074)
Q Consensus 432 l~~~~e~~~~~~~~eel~~e~~eL 455 (1074)
.+++..+.+.+.++++++++++.+
T Consensus 65 kVnqSALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 65 KVRQHATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 20
>KOG4672|consensus
Probab=94.30 E-value=0.19 Score=57.03 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=4.2
Q ss_pred CCHHHHHHHH
Q psy8075 697 MTDEEISKAI 706 (1074)
Q Consensus 697 ~~~~ei~~aI 706 (1074)
.+.++...++
T Consensus 470 vtkDDaY~~F 479 (487)
T KOG4672|consen 470 VTKDDAYNAF 479 (487)
T ss_pred CcchHHHHHH
Confidence 3444444433
No 21
>KOG4672|consensus
Probab=93.25 E-value=0.4 Score=54.43 Aligned_cols=7 Identities=29% Similarity=0.638 Sum_probs=2.7
Q ss_pred hHHHHHH
Q psy8075 99 PEQYIEQ 105 (1074)
Q Consensus 99 P~~yi~~ 105 (1074)
|+..++.
T Consensus 49 p~qi~~~ 55 (487)
T KOG4672|consen 49 PDQITSK 55 (487)
T ss_pred HHHHHHH
Confidence 4433333
No 22
>KOG2999|consensus
Probab=93.16 E-value=0.85 Score=54.04 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=84.6
Q ss_pred CCChHHHHHHHhcccCCCCCCCChhhhhhHHHHHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhcccccCCcchhHH
Q psy8075 96 PDNPEQYIEQLRNFKSSPLTEHDDTEIKSRTRILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSS 175 (1074)
Q Consensus 96 ~~~P~~yi~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~ 175 (1074)
..+|+.|...+.+..+. +...+-....+.|.+|. ..+.+.++|+.+.|+..|+.....-..- ..+.+...
T Consensus 78 ~~sp~~~a~~i~e~l~~----~~~~~~~~a~k~l~sls-----~d~~fa~efi~~~gl~~L~~liedg~~~-~~~~~L~~ 147 (713)
T KOG2999|consen 78 CASPSHYAKRIMEILTE----GNNISKMEALKELDSLS-----LDPTFAEEFIRCSGLELLFSLIEDGRVC-MSSELLST 147 (713)
T ss_pred ecCchHHHHHHHHHHhC----CCcHHHHHHHHHHhhcc-----ccHHHHHHHHhcchHHHHHHHHHcCccc-hHHHHHHH
Confidence 47899999999876542 21001011234444443 3578999999999999999987643221 12222333
Q ss_pred HHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCC--ChhhHHHHHHHHHHHhccCCchhHHHHHHhhHHHHcccccchH
Q psy8075 176 IIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTE--NIKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQRFCNERSRFQ 253 (1074)
Q Consensus 176 ~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~--~~~tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~~~~e~~RF~ 253 (1074)
||+.+--+|....--=..+.++ +|..++.-..-+ ...|-..++.+|-. .|+.+-+.+. +..|.-..+
T Consensus 148 ~L~af~elmehgvvsW~~~~~~-fV~~~a~~V~~~~~~a~~~~~AL~~LE~---------~vl~s~~~~~-~v~eev~i~ 216 (713)
T KOG2999|consen 148 SLRAFSELMEHGVVSWESVSND-FVVSMASYVNAKREDANTLLAALQMLES---------LVLGSDTLRQ-LVAEEVPIE 216 (713)
T ss_pred HHHHHHHHHhhceeeeeecccH-HHHHHHHHHhhhhhcccchHHHHHHHHH---------HHhCChHHHH-HHHhcCcHH
Confidence 4444444444322000011111 222222222111 12233334444432 3333333333 334555678
Q ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhcC
Q psy8075 254 GIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSY 286 (1074)
Q Consensus 254 ~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~ 286 (1074)
.++..+..+ +...++.++++||+++.-
T Consensus 217 ~li~hlq~~------n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 217 TLIRHLQVS------NQRIQTCAIALLNALFRK 243 (713)
T ss_pred HHHHHHHhc------chHHHHHHHHHHHHHHhh
Confidence 888888754 345667789999999975
No 23
>KOG1830|consensus
Probab=92.84 E-value=0.49 Score=53.94 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=4.2
Q ss_pred hHHHHhccC
Q psy8075 687 NCTILLSKL 695 (1074)
Q Consensus 687 Ni~I~L~~l 695 (1074)
+.+|+.+++
T Consensus 489 vatiLsRRi 497 (518)
T KOG1830|consen 489 VATILSRRI 497 (518)
T ss_pred HHHHHHHHH
Confidence 344555443
No 24
>KOG4368|consensus
Probab=92.65 E-value=16 Score=43.80 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHhccCC
Q psy8075 358 MFNILRRKLGHTAAYPHFLSLLHHCILLP 386 (1074)
Q Consensus 358 v~~~l~~~~~~t~a~~~~lSiLQhLLli~ 386 (1074)
|...|+++|+...+.-+| -|+-|.||.
T Consensus 142 ~~~~l~n~~~~~~~~~~l--rlh~~ylin 168 (757)
T KOG4368|consen 142 MAGHLRNRITADGAHFEL--RLHLIYLIN 168 (757)
T ss_pred HHHHHHhhhcccccchhh--hhhhHHHHH
Confidence 455677888777765444 243334443
No 25
>KOG4199|consensus
Probab=91.74 E-value=1.6 Score=49.08 Aligned_cols=141 Identities=21% Similarity=0.296 Sum_probs=95.8
Q ss_pred hhHHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcC-CChhhHHHHHH
Q psy8075 142 SFVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLST-ENIKTKIAVLE 220 (1074)
Q Consensus 142 ~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s-~~~~tr~~v~e 220 (1074)
.++++-.+.||++.|+..+...+..... .+--.|+.=|+||--+..--..+......=..++..+.+ .++.+-..++-
T Consensus 274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r-~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 274 EICKSIAESGGLDTLLRCIDDSNEQGNR-TLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHccCHHHHHHHHhhhchhhHH-HHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence 4677777899999999999875533211 244578888999999888777777766655555555543 36778888888
Q ss_pred HHHHHhcc-C---------CchhHHHHHHhhHHHHcccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcCCCCC
Q psy8075 221 ILGAVCLI-P---------GGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQ 290 (1074)
Q Consensus 221 lLaavc~~-~---------~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~~~~~ 290 (1074)
+++.+|+- | ||...+++||..+-... .| -+.+||..=|.++.+.
T Consensus 353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a--------~v---------------Qrnac~~IRNiv~rs~--- 406 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAA--------QV---------------QRNACNMIRNIVVRSA--- 406 (461)
T ss_pred HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHH--------HH---------------HHHHHHHHHHHHHhhh---
Confidence 88889983 4 45566677776542211 11 1478999999999862
Q ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHh
Q psy8075 291 HSLEFRLHLRYEVIMLGIQPIIDKLR 316 (1074)
Q Consensus 291 ~dl~~R~~lR~Ef~~~GL~~~l~~Lr 316 (1074)
+ + |.-+...|++.+|..-+
T Consensus 407 ~---~----~~~~l~~GiE~Li~~A~ 425 (461)
T KOG4199|consen 407 E---N----RTILLANGIEKLIRTAK 425 (461)
T ss_pred h---c----cchHHhccHHHHHHHHH
Confidence 2 2 34467888887776433
No 26
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=91.66 E-value=2.9 Score=49.65 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhh
Q psy8075 501 VAELEDRISELK 512 (1074)
Q Consensus 501 ~~~l~~~l~~l~ 512 (1074)
+..|..++.++.
T Consensus 163 ir~Lr~~~~~l~ 174 (582)
T PF03276_consen 163 IRDLRETIQRLQ 174 (582)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 27
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=91.28 E-value=0.69 Score=50.88 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy8075 501 VAELEDRIS 509 (1074)
Q Consensus 501 ~~~l~~~l~ 509 (1074)
+..|.+||+
T Consensus 131 Ls~LRaQIA 139 (253)
T PF05308_consen 131 LSRLRAQIA 139 (253)
T ss_pred HHHHHHHHH
Confidence 333444443
No 28
>KOG1925|consensus
Probab=90.43 E-value=0.37 Score=55.83 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=21.6
Q ss_pred ccceeccccccccccccCCCCCcchHHHHHHHHH
Q psy8075 822 ASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAE 855 (1074)
Q Consensus 822 A~GFkL~sL~KL~dtKs~~d~k~TLLhylv~~v~ 855 (1074)
.+||-|+.|.-+.+.=+-+|-|---|.||.+.-+
T Consensus 472 Tf~~il~tLLAIGNfLnGT~~KgFeLsYLeKvsE 505 (817)
T KOG1925|consen 472 TFRCILATLLAIGNFLNGTQSKGFELSYLEKVSE 505 (817)
T ss_pred hHHHHHHHHHHHhccccCccccceehHhhhhchh
Confidence 6777777777766654434555666777766544
No 29
>KOG4849|consensus
Probab=90.19 E-value=1.4 Score=49.03 Aligned_cols=10 Identities=0% Similarity=0.092 Sum_probs=5.7
Q ss_pred CHHHHHHHhh
Q psy8075 640 ELEVVDKLFC 649 (1074)
Q Consensus 640 d~~~lE~lF~ 649 (1074)
--.+||+...
T Consensus 358 SeAEFEdiM~ 367 (498)
T KOG4849|consen 358 SEAEFEDIMT 367 (498)
T ss_pred hHHHHHHHHh
Confidence 3456666654
No 30
>KOG2129|consensus
Probab=89.84 E-value=41 Score=38.90 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy8075 475 DLDESLSRIKDRLEKETAGHLEAKQKVAELED 506 (1074)
Q Consensus 475 ~l~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~ 506 (1074)
++++....++.+|..+...+..+.+++.+-+.
T Consensus 289 ~~reen~rlQrkL~~e~erRealcr~lsEses 320 (552)
T KOG2129|consen 289 DHREENERLQRKLINELERREALCRMLSESES 320 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 45666666666776666665555555444333
No 31
>KOG4849|consensus
Probab=89.69 E-value=1.5 Score=48.78 Aligned_cols=8 Identities=13% Similarity=-0.031 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q psy8075 325 RHLDFFEM 332 (1074)
Q Consensus 325 ~qi~~fe~ 332 (1074)
.|++.||+
T Consensus 28 D~~eL~ee 35 (498)
T KOG4849|consen 28 DGKELKEE 35 (498)
T ss_pred cchhhhhc
Confidence 45555543
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.63 E-value=1.5 Score=41.35 Aligned_cols=82 Identities=13% Similarity=0.220 Sum_probs=67.7
Q ss_pred chhhHHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHH
Q psy8075 140 PHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVL 219 (1074)
Q Consensus 140 ~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~ 219 (1074)
.-.....|++.+|+..|+++|.. .+..+...++.||..|..+.......+.....+..|...|...+..++..++
T Consensus 38 ~~~~~~~~~~~~~i~~l~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~ 112 (120)
T cd00020 38 NNDNIQAVVEAGGLPALVQLLKS-----EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNAT 112 (120)
T ss_pred CHHHHHHHHHCCChHHHHHHHhC-----CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHH
Confidence 35778888988999999999874 2445667889999999887766666666677899999999999999999999
Q ss_pred HHHHHHh
Q psy8075 220 EILGAVC 226 (1074)
Q Consensus 220 elLaavc 226 (1074)
.+|..+|
T Consensus 113 ~~l~~l~ 119 (120)
T cd00020 113 GALSNLA 119 (120)
T ss_pred HHHHHhh
Confidence 9998877
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.13 E-value=4.5 Score=38.04 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=63.4
Q ss_pred HhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcC-hhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHH
Q psy8075 146 RFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNN-STGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGA 224 (1074)
Q Consensus 146 ~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~-~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaa 224 (1074)
+|++.+|+..|+++|..-+ ..+...++.||..+.-+ ..+...++. ..++..+...|.+++.+++..++-.|+-
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~ 75 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-----ENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRN 75 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-----HHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5788899999999987543 34567889999998877 555666654 5789999999999999999999999999
Q ss_pred HhccC
Q psy8075 225 VCLIP 229 (1074)
Q Consensus 225 vc~~~ 229 (1074)
+|..+
T Consensus 76 l~~~~ 80 (120)
T cd00020 76 LAAGP 80 (120)
T ss_pred HccCc
Confidence 98854
No 34
>KOG0212|consensus
Probab=87.79 E-value=21 Score=43.10 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHhccCCcc
Q psy8075 358 MFNILRRKLGHTAAYPHFLSLLHHCILLPLE 388 (1074)
Q Consensus 358 v~~~l~~~~~~t~a~~~~lSiLQhLLli~~~ 388 (1074)
||..++-.+-...-+||+...|=.||.+-+-
T Consensus 562 IFtylRLqLLe~~~~pyL~kaLyGlLMLLPQ 592 (675)
T KOG0212|consen 562 IFTYLRLQLLEPKNNPYLHKALYGLLMLLPQ 592 (675)
T ss_pred hHHHHHHHHhccccCchHHHHHHHHHHHccc
Confidence 5677777777777889999888888776543
No 35
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.47 E-value=44 Score=36.49 Aligned_cols=8 Identities=50% Similarity=0.762 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy8075 503 ELEDRISE 510 (1074)
Q Consensus 503 ~l~~~l~~ 510 (1074)
.|..++.+
T Consensus 92 ~Lk~~in~ 99 (230)
T PF10146_consen 92 PLKDEINE 99 (230)
T ss_pred HHHHHHHH
Confidence 33333333
No 36
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=86.38 E-value=2.8 Score=46.20 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhhc
Q psy8075 501 VAELEDRISELKHR 514 (1074)
Q Consensus 501 ~~~l~~~l~~l~~~ 514 (1074)
+..|++++..|+++
T Consensus 124 IsALEdELs~LRaQ 137 (253)
T PF05308_consen 124 ISALEDELSRLRAQ 137 (253)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 37
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=85.71 E-value=20 Score=41.04 Aligned_cols=10 Identities=10% Similarity=0.105 Sum_probs=6.1
Q ss_pred CChHHHHHHH
Q psy8075 97 DNPEQYIEQL 106 (1074)
Q Consensus 97 ~~P~~yi~~L 106 (1074)
....||++++
T Consensus 19 kgC~YYlryf 28 (442)
T PF06637_consen 19 KGCWYYLRYF 28 (442)
T ss_pred CChhHHHHHH
Confidence 3456777664
No 38
>KOG2675|consensus
Probab=85.59 E-value=0.89 Score=52.40 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=11.3
Q ss_pred ccchhhhhhHHH-HhccCC
Q psy8075 679 VIDGRRAQNCTI-LLSKLK 696 (1074)
Q Consensus 679 vLD~kraqNi~I-~L~~lk 696 (1074)
..|-=.+||++| +++++.
T Consensus 393 ~~eiinc~~v~iQv~g~~P 411 (480)
T KOG2675|consen 393 IVEIINCQDVQIQVMGSVP 411 (480)
T ss_pred eeEEeeccceeeEEcccCC
Confidence 334456778887 566665
No 39
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=85.48 E-value=2.1 Score=53.03 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHh
Q psy8075 46 TNELNTMFEELVEE 59 (1074)
Q Consensus 46 ~~ei~~~F~~ll~~ 59 (1074)
....-+-|+.|..+
T Consensus 76 ~a~~ae~f~glarK 89 (759)
T PF05518_consen 76 NAVLAENFEGLARK 89 (759)
T ss_pred chhhHHHHHHHHHH
Confidence 33444445554433
No 40
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=85.12 E-value=12 Score=44.48 Aligned_cols=37 Identities=8% Similarity=0.213 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 423 INVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKK 462 (1074)
Q Consensus 423 ~~v~~li~~l~~~~e~~~~~~~~eel~~e~~eL~~kl~~~ 462 (1074)
.|+..+++...++. ..+..+++.+....+|+++|+.+
T Consensus 52 ~~~~~vV~~~Fddk---VnqSALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 52 PDMTGVVDTTFDDK---VRQHATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred CCccceecchhHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777877666653 22334555555555555555544
No 41
>KOG0132|consensus
Probab=84.70 E-value=4.3 Score=50.06 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=9.0
Q ss_pred HHHHHHHhc----C-CChhHHHh
Q psy8075 52 MFEELVEEL----D-LTAPNKAA 69 (1074)
Q Consensus 52 ~F~~ll~~~----n-l~~~~~~~ 69 (1074)
.|..-|+++ + |+..|-..
T Consensus 6 ~Fn~eL~SL~DsK~~IS~sKi~~ 28 (894)
T KOG0132|consen 6 EFNGELDSLEDSKPGISGSKILK 28 (894)
T ss_pred HHHHHHHHhhccCCcccHHHHHH
Confidence 355444444 3 66655443
No 42
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.39 E-value=65 Score=40.31 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhCc
Q psy8075 293 LEFRLHLRYEVIMLGI 308 (1074)
Q Consensus 293 l~~R~~lR~Ef~~~GL 308 (1074)
-+..-+|+..+...|+
T Consensus 182 ~el~~~L~~~a~~egl 197 (585)
T PRK14950 182 ADMAAHLRKIAAAEGI 197 (585)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3455556666666665
No 43
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.19 E-value=57 Score=40.77 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHhcc
Q psy8075 357 SMFNILRRKLGHTAAYPHFLSLLHHCIL 384 (1074)
Q Consensus 357 ~v~~~l~~~~~~t~a~~~~lSiLQhLLl 384 (1074)
+..+.|.....++ ...+++.|+.|..
T Consensus 202 eal~~La~~s~Gd--lr~al~~LekL~~ 227 (585)
T PRK14950 202 GALEAIARAATGS--MRDAENLLQQLAT 227 (585)
T ss_pred HHHHHHHHHcCCC--HHHHHHHHHHHHH
Confidence 4555565555443 3355666666544
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=82.56 E-value=36 Score=40.62 Aligned_cols=141 Identities=16% Similarity=0.253 Sum_probs=80.4
Q ss_pred CcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHH--HHHhcc--C-CchhHHHHHHhhHH
Q psy8075 169 QTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEIL--GAVCLI--P-GGHKKVLDAMSHYQ 243 (1074)
Q Consensus 169 ~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elL--aavc~~--~-~Gh~~VL~Al~~~~ 243 (1074)
.....+.|+.||..|+..+.=+..+..+. ++..|...|.+.. ..++++ +.+|++ . .++ ..+.+..
T Consensus 157 ~~~~~~~~v~~L~~LL~~~~~R~~f~~~~-~v~~L~~~L~~~~-----~~~Ql~Y~~ll~lWlLSF~~~--~~~~~~~-- 226 (429)
T cd00256 157 NNDYVQTAARCLQMLLRVDEYRFAFVLAD-GVPTLVKLLSNAT-----LGFQLQYQSIFCIWLLTFNPH--AAEVLKR-- 226 (429)
T ss_pred CcchHHHHHHHHHHHhCCchHHHHHHHcc-CHHHHHHHHhhcc-----ccHHHHHHHHHHHHHHhccHH--HHHhhcc--
Confidence 34557789999999999886554444444 8888888775422 234444 233332 1 111 1111211
Q ss_pred HHcccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHhc--cCch
Q psy8075 244 RFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRT--HENE 321 (1074)
Q Consensus 244 ~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~~~~~~dl~~R~~lR~Ef~~~GL~~~l~~Lr~--~~~~ 321 (1074)
..=+..+++.+..+. . +--.+++++.|-|.+-.. .+.+.+.-.-..+..+|+..++..|.. +.++
T Consensus 227 -----~~~i~~l~~i~k~s~---K-EKvvRv~l~~l~Nll~~~----~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De 293 (429)
T cd00256 227 -----LSLIQDLSDILKEST---K-EKVIRIVLAIFRNLISKR----VDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE 293 (429)
T ss_pred -----ccHHHHHHHHHHhhh---h-HHHHHHHHHHHHHHhhcc----cccchhhhHHHHHHHcChHHHHHHHhcCCCCcH
Confidence 122334555554331 1 112467888899988643 122223334457778999999998854 6788
Q ss_pred HHHHHHHHHHH
Q psy8075 322 TLDRHLDFFEM 332 (1074)
Q Consensus 322 ~L~~qi~~fe~ 332 (1074)
+|-.-|+.-.+
T Consensus 294 dL~edl~~L~e 304 (429)
T cd00256 294 DLTDDLKFLTE 304 (429)
T ss_pred HHHHHHHHHHH
Confidence 88766654443
No 45
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=82.04 E-value=18 Score=39.82 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy8075 494 HLEAKQKVAELEDRISE 510 (1074)
Q Consensus 494 ~~~~~~~~~~l~~~l~~ 510 (1074)
++.+..+|.+|+.+|+.
T Consensus 57 L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 57 LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44556677777777654
No 46
>KOG4590|consensus
Probab=80.93 E-value=2.5 Score=49.42 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=5.6
Q ss_pred CHHHHHHHHHcCC
Q psy8075 698 TDEEISKAILSMD 710 (1074)
Q Consensus 698 ~~~ei~~aI~~~D 710 (1074)
+.+.....+..+.
T Consensus 320 a~~~~~~g~~~~s 332 (409)
T KOG4590|consen 320 APDSGRSGINTVS 332 (409)
T ss_pred CccccccccCCcc
Confidence 3444444444443
No 47
>KOG0977|consensus
Probab=80.06 E-value=70 Score=39.09 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhC--cHHHHHHHhccC--chHHHHHHHHHHHhHHhhHHHHHhhhcCCccCCCCHHHHHH
Q psy8075 293 LEFRLHLRYEVIMLG--IQPIIDKLRTHE--NETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMFN 360 (1074)
Q Consensus 293 l~~R~~lR~Ef~~~G--L~~~l~~Lr~~~--~~~L~~qi~~fe~~~~eDe~el~~~~~~~~~d~~~~~~v~~ 360 (1074)
-+-|..-+.|+..|. |..+|++.|.++ |-.|..+|+.+.. ..+.|..+...+|+
T Consensus 34 r~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~--------------~~~~~ts~ik~~ye 91 (546)
T KOG0977|consen 34 RDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG--------------VVGRETSGIKAKYE 91 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hccCCCcchhHHhh
Confidence 345766777777553 778999998765 7788888876653 34556666666665
No 48
>KOG4590|consensus
Probab=79.60 E-value=3 Score=48.79 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=3.0
Q ss_pred hhHHHH
Q psy8075 393 PQHWLL 398 (1074)
Q Consensus 393 ~~~~~l 398 (1074)
.|+|+.
T Consensus 66 FHqWR~ 71 (409)
T KOG4590|consen 66 FHQWRD 71 (409)
T ss_pred hhhhhh
Confidence 345654
No 49
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=78.12 E-value=4.1 Score=48.49 Aligned_cols=48 Identities=8% Similarity=0.245 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHhh---hhccchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHH
Q psy8075 845 TLLHYLVELAEKRF---KEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKE 895 (1074)
Q Consensus 845 TLLhylv~~v~~~~---p~ll~f~~eL~~v~~Aakvs~~~l~~d~~~l~~~l~~ 895 (1074)
.-..||...|.+.- -|-+.+.+-+.. --+-.++.|...|.++...+..
T Consensus 455 gsYkYI~~SIdkDi~tAnDGl~YynKM~e---lYK~~L~aVn~~Ik~ie~~~~~ 505 (574)
T PF07462_consen 455 GSYKYIGASIDKDIATANDGLAYYNKMGE---LYKKHLDAVNEQIKEIEDEIND 505 (574)
T ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhccccH
Confidence 34567777776521 122222222221 1233455555555555555444
No 50
>KOG2160|consensus
Probab=77.63 E-value=66 Score=37.00 Aligned_cols=134 Identities=22% Similarity=0.254 Sum_probs=80.1
Q ss_pred HHHHhhhhccCchhhHHHhh-hcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhh
Q psy8075 129 LDSLRTALRTQPHSFVLRFI-ECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSL 207 (1074)
Q Consensus 129 l~~L~v~Lrt~~~~Wv~~Fi-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL 207 (1074)
..=+-...++| -.+|+++ +.+|+..|+.+|..=+..+...... --|.|| |-|+++|...++.-.. ...|..+|
T Consensus 145 a~Vigt~~qNN--P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL-~AissL--IRn~~~g~~~fl~~~G-~~~L~~vl 218 (342)
T KOG2160|consen 145 ARVIGTAVQNN--PKSQEQVIELGALSKLLKILSSDDPNTVRTKAL-FAISSL--IRNNKPGQDEFLKLNG-YQVLRDVL 218 (342)
T ss_pred HHHHHHHHhcC--HHHHHHHHHcccHHHHHHHHccCCCchHHHHHH-HHHHHH--HhcCcHHHHHHHhcCC-HHHHHHHH
Confidence 33444556677 4567776 8889999999988322111111111 123332 5689999999998776 56778888
Q ss_pred cC--CChhhHHHHHHHHHHHhccCCchhHHHHHHhhHHHHcccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Q psy8075 208 ST--ENIKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVL 284 (1074)
Q Consensus 208 ~s--~~~~tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv 284 (1074)
-+ ...+.+.-|+.|++.+..- +..+.+ ..+ ...|+..+..+..+ ...+..-+++..++.++
T Consensus 219 ~~~~~~~~lkrK~~~Ll~~Ll~~---~~s~~d---~~~-----~~~f~~~~~~l~~~-----l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 219 QSNNTSVKLKRKALFLLSLLLQE---DKSDED---IAS-----SLGFQRVLENLISS-----LDFEVNEAALTALLSLL 281 (342)
T ss_pred HcCCcchHHHHHHHHHHHHHHHh---hhhhhh---HHH-----HhhhhHHHHHHhhc-----cchhhhHHHHHHHHHHH
Confidence 87 4678888888888766653 222222 001 23466666665443 22344455666666666
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=77.51 E-value=50 Score=40.50 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHHhccCCchhHH
Q psy8075 173 HSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIPGGHKKV 235 (1074)
Q Consensus 173 ~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~~~~Gh~~V 235 (1074)
...+++.|..+.++..|.-.++.+.+.+..|..+|..++..+...+..+|..++-.+.|.+.|
T Consensus 94 r~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 94 RRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 334555566666777888888999999999999999999999999999999999877776655
No 52
>KOG1962|consensus
Probab=77.09 E-value=36 Score=36.51 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy8075 448 LEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRIS 509 (1074)
Q Consensus 448 l~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 509 (1074)
++++++.+.+.+..++.+++.+.++++........++++.+.-..+.+.+-++...|+++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44556667777777777777777777777777766776666666666655555555665554
No 53
>KOG2675|consensus
Probab=76.62 E-value=2.6 Score=48.82 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=7.4
Q ss_pred CCCChHHHHHHH
Q psy8075 742 ETLARADRFLYE 753 (1074)
Q Consensus 742 ~~L~~aeqF~~~ 753 (1074)
.+..-+|||.-.
T Consensus 455 ~EfpvPEQfkt~ 466 (480)
T KOG2675|consen 455 VEFPVPEQFKTK 466 (480)
T ss_pred ccccChHHHhhh
Confidence 456677777543
No 54
>KOG0946|consensus
Probab=75.42 E-value=1.6e+02 Score=37.29 Aligned_cols=202 Identities=15% Similarity=0.184 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHhcCCChhHHHhhcCCC-hHHHHHHHHhhcccccCCCCCCCChHHHHHHHhcccCCCCCCCChhhhhhH
Q psy8075 47 NELNTMFEELVEELDLTAPNKAAMLSLP-DEKKWQIYCSRKMDQTSTTDAPDNPEQYIEQLRNFKSSPLTEHDDTEIKSR 125 (1074)
Q Consensus 47 ~ei~~~F~~ll~~~nl~~~~~~~m~~~~-~ekKw~li~~~~~~~~~~~~~~~~P~~yi~~L~~~~~~~~~~~~~~~~~~~ 125 (1074)
+.|..+-+++ +.=-|.++-|.+.+.+. ..+|+.+-.--+. -..+|+-|.+... ++ +..
T Consensus 22 ETI~kLcDRv-essTL~eDRR~A~rgLKa~srkYR~~Vga~G-----------mk~li~vL~~D~~----D~-----E~i 80 (970)
T KOG0946|consen 22 ETIEKLCDRV-ESSTLLEDRRDAVRGLKAFSRKYREEVGAQG-----------MKPLIQVLQRDYM----DP-----EII 80 (970)
T ss_pred hHHHHHHHHH-hhccchhhHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHhhccC----CH-----HHH
Confidence 4454444443 33468888888888865 6677754322221 1234444443211 01 112
Q ss_pred HHHHHHHhhhhccCc--------------hhhH-HHhhh-cCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChh-
Q psy8075 126 TRILDSLRTALRTQP--------------HSFV-LRFIE-CEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNST- 188 (1074)
Q Consensus 126 ~~~l~~L~v~Lrt~~--------------~~Wv-~~Fi~-~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~- 188 (1074)
.-.|.-+-+.+++.. -.|+ ..|+. .+-+.+|+.++...+..- ....|.=|-|||.+..
T Consensus 81 k~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~V-----R~~aIqLlsalls~r~~ 155 (970)
T KOG0946|consen 81 KYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHV-----RLYAIQLLSALLSCRPT 155 (970)
T ss_pred HHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhh-----hhHHHHHHHHHHhcCCH
Confidence 223333333333331 1355 45774 456788888888655432 2334555666666653
Q ss_pred -hHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHHhccCCchhHHHHHHhhHHHHcccccchHHHHHHhhhccCCcc
Q psy8075 189 -GRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYR 267 (1074)
Q Consensus 189 -G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~ 267 (1074)
--+.++.+|.+|..|.--|+..+-..|..++=+|.++.-- ++|-.=|=||++. |..|++.+...+|..
T Consensus 156 e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~-n~~IQKlVAFENa---------FerLfsIIeeEGg~d- 224 (970)
T KOG0946|consen 156 ELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD-NSSIQKLVAFENA---------FERLFSIIEEEGGLD- 224 (970)
T ss_pred HHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc-CchHHHHHHHHHH---------HHHHHHHHHhcCCCC-
Confidence 3456889999999999999988888999988777766543 3565556688764 667777776554321
Q ss_pred chhHHHHHHHHHHHHHhcC
Q psy8075 268 TDVSIKTALMSFLNAVLSY 286 (1074)
Q Consensus 268 ~~~~~~~a~m~lIN~lv~~ 286 (1074)
.--..--||.|+|-|+..
T Consensus 225 -GgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 225 -GGIVVEDCLILLNNLLKN 242 (970)
T ss_pred -CcchHHHHHHHHHHHHhh
Confidence 101235699999999964
No 55
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=74.21 E-value=37 Score=38.72 Aligned_cols=138 Identities=13% Similarity=0.229 Sum_probs=75.9
Q ss_pred cchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHH--HHHhccC-CchhHHHHHHhhHHHHc
Q psy8075 170 TSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEIL--GAVCLIP-GGHKKVLDAMSHYQRFC 246 (1074)
Q Consensus 170 ~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elL--aavc~~~-~Gh~~VL~Al~~~~~~~ 246 (1074)
...++.|+.||..|+.++.=+ .++-+..++..|...|...........++++ +.+|++- .-...+.+.|.+.
T Consensus 164 ~~~~~~av~~L~~LL~~~~~R-~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~---- 238 (312)
T PF03224_consen 164 SELQYIAVQCLQNLLRSKEYR-QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKK---- 238 (312)
T ss_dssp H---HHHHHHHHHHHTSHHHH-HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTT----
T ss_pred cchHHHHHHHHHHHhCcchhH-HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhcc----
Confidence 345688999999999887544 4444588888888877322222333344444 2333320 1233344444321
Q ss_pred ccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHhc--cCchHHH
Q psy8075 247 NERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRT--HENETLD 324 (1074)
Q Consensus 247 ~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~~~~~~dl~~R~~lR~Ef~~~GL~~~l~~Lr~--~~~~~L~ 324 (1074)
+=+..+++.+..+. -+-=.+++.+.|-|.+-.. ... .-..+..+|+..++..|.. +.+++|.
T Consensus 239 ---~~i~~L~~i~~~~~----KEKvvRv~la~l~Nl~~~~---~~~------~~~~mv~~~~l~~l~~L~~rk~~Dedl~ 302 (312)
T PF03224_consen 239 ---YLIPLLADILKDSI----KEKVVRVSLAILRNLLSKA---PKS------NIELMVLCGLLKTLQNLSERKWSDEDLT 302 (312)
T ss_dssp ---SHHHHHHHHHHH------SHHHHHHHHHHHHHTTSSS---STT------HHHHHHHH-HHHHHHHHHSS--SSHHHH
T ss_pred ---chHHHHHHHHHhcc----cchHHHHHHHHHHHHHhcc---HHH------HHHHHHHccHHHHHHHHhcCCCCCHHHH
Confidence 13445555554431 1122467888899988653 232 6677889999999998854 6688886
Q ss_pred HHHH
Q psy8075 325 RHLD 328 (1074)
Q Consensus 325 ~qi~ 328 (1074)
.-|+
T Consensus 303 edl~ 306 (312)
T PF03224_consen 303 EDLE 306 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 56
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=73.50 E-value=1.4e+02 Score=33.20 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=12.7
Q ss_pred cCCCChhhHHHHHHHhccCCcc
Q psy8075 367 GHTAAYPHFLSLLHHCILLPLE 388 (1074)
Q Consensus 367 ~~t~a~~~~lSiLQhLLli~~~ 388 (1074)
.+-...+.|.+|||.++.=..|
T Consensus 90 ngY~Vk~S~~silq~If~KHGD 111 (269)
T PF05278_consen 90 NGYQVKPSQVSILQKIFEKHGD 111 (269)
T ss_pred CCEEEcHhHHHHHHHHHHhCcc
Confidence 3444555666777766654444
No 57
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=73.30 E-value=21 Score=42.80 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=77.0
Q ss_pred hhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCC----CchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 868 LCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLV-PGD----RFLPVMKEFLTSATCRLSEIEDLFQDMKTR 942 (1074)
Q Consensus 868 L~~v~~Aakvs~~~l~~d~~~l~~~l~~~~~el~~~~~~~~~-~~D----~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~ 942 (1074)
+.....++...++.+...+..+...+..+..-+. ..+.. .-+ .|...+..|...+.+.....+..-......
T Consensus 315 m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfg---e~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~ 391 (432)
T smart00498 315 MKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYG---EDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQL 391 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667788888888888888888877765432 22221 113 344556666676777777777777788888
Q ss_pred HHHHHHHhCCCC--CCCChhhhHHHHHHHHHHHHHHHHH
Q psy8075 943 FDRAVRLFGEDN--SSIQPEDFFVIFDTFLTTLNEAKLD 979 (1074)
Q Consensus 943 ~~~l~~yfGEd~--~~~~~~eFF~~~~~F~~~f~~a~~e 979 (1074)
.+++..||...+ +...+..+|.+..+|...++..+++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~ 430 (432)
T smart00498 392 VKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEE 430 (432)
T ss_pred HHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHh
Confidence 889999998754 2346778899999999999888764
No 58
>PHA03378 EBNA-3B; Provisional
Probab=72.44 E-value=22 Score=43.39 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=23.8
Q ss_pred HHHHHHHHhcChhhH-HHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHHhcc
Q psy8075 176 IIGCIKALMNNSTGR-SHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLI 228 (1074)
Q Consensus 176 ~l~ClkalmN~~~G~-~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~~ 228 (1074)
|++-++.+.+-.|-+ -..++.-.+++.|=..+.+++ |..-+|.|+++|--
T Consensus 241 ~Ar~lRs~s~rRYrlFFDlvss~rSL~~IWi~vLt~n---RVaFveFmG~L~k~ 291 (991)
T PHA03378 241 MARRARSLSAERYTLFFDLVSSGNTLYAIWIGLGTRN---RVAFVEFVGWLCKK 291 (991)
T ss_pred HHHHHHhhcccchhhhhhHHhhcccHHHHHhcccchh---hhHHHHHHHHHhcc
Confidence 445555555544421 112233334444444444433 55556666666653
No 59
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=71.63 E-value=9.5 Score=47.57 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=6.9
Q ss_pred hHHHHHHHhccc
Q psy8075 99 PEQYIEQLRNFK 110 (1074)
Q Consensus 99 P~~yi~~L~~~~ 110 (1074)
++.|+...+.+.
T Consensus 80 ae~f~glarKys 91 (759)
T PF05518_consen 80 AENFEGLARKYS 91 (759)
T ss_pred HHHHHHHHHHhc
Confidence 456666665544
No 60
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=69.67 E-value=78 Score=36.50 Aligned_cols=134 Identities=20% Similarity=0.313 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHHhccCCch--hHHHHHHhhHHHHcccc
Q psy8075 172 LHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIPGGH--KKVLDAMSHYQRFCNER 249 (1074)
Q Consensus 172 ~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~~~~Gh--~~VL~Al~~~~~~~~e~ 249 (1074)
++.....++|.|+++. +..|.++|.+.+......++.||++++.+.+|. ..|+++|+-- .
T Consensus 42 ~~~~g~~l~~~iL~~~------------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~------~ 103 (330)
T PF11707_consen 42 FQSYGLELIRSILQNH------------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFS------L 103 (330)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCc------h
Confidence 3444566777777764 677889999998877789999999999976552 3466766421 1
Q ss_pred cchHHHHHHhhhccCCccch-----hHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhC--cHHHHHHHhccCchH
Q psy8075 250 SRFQGIVNDLDKSTGIYRTD-----VSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLG--IQPIIDKLRTHENET 322 (1074)
Q Consensus 250 ~RF~~lv~~l~~~~~~~~~~-----~~~~~a~m~lIN~lv~~~~~~~dl~~R~~lR~Ef~~~G--L~~~l~~Lr~~~~~~ 322 (1074)
..|..++.-=... +..... ...+++.+.|+=+++..+ + -.+|.+++..+ +..++..|.....+.
T Consensus 104 ~~l~kll~~~~~~-~~~~~~~~~~~~siR~~fI~F~Lsfl~~~----~----~~~~~~lL~~~~~~~~l~k~l~~D~~~~ 174 (330)
T PF11707_consen 104 KSLPKLLTPRKKE-KEKDSESSKSKPSIRTNFIRFWLSFLSSG----D----PELKRDLLSQKKLMSALFKGLRKDPPET 174 (330)
T ss_pred hhHHHHhcccccc-ccccccccccCcCHHHHHHHHHHHHHccC----C----HHHHHHHHHcCchHHHHHhcccCCCHHH
Confidence 2233333211100 000000 267788888888888763 1 22555655333 444555555534445
Q ss_pred HHHHHHHHHH
Q psy8075 323 LDRHLDFFEM 332 (1074)
Q Consensus 323 L~~qi~~fe~ 332 (1074)
+..-++++.+
T Consensus 175 v~~iL~~l~~ 184 (330)
T PF11707_consen 175 VILILETLKD 184 (330)
T ss_pred HHHHHHHHHH
Confidence 5554555443
No 61
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.64 E-value=83 Score=36.04 Aligned_cols=50 Identities=30% Similarity=0.413 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy8075 456 SNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELE 505 (1074)
Q Consensus 456 ~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~l~ 505 (1074)
+.++.+...+++.+.++.+++.+++..+...++...........++.+++
T Consensus 210 k~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 210 KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333333333333333
No 62
>KOG3895|consensus
Probab=68.02 E-value=28 Score=39.55 Aligned_cols=10 Identities=10% Similarity=0.076 Sum_probs=5.7
Q ss_pred CchhhHHHhh
Q psy8075 139 QPHSFVLRFI 148 (1074)
Q Consensus 139 ~~~~Wv~~Fi 148 (1074)
.+.+|-+=|-
T Consensus 97 ~H~DWsKyFr 106 (488)
T KOG3895|consen 97 PHTDWSKYFR 106 (488)
T ss_pred CcccHHHHhc
Confidence 3456666664
No 63
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=65.21 E-value=13 Score=44.58 Aligned_cols=6 Identities=17% Similarity=0.240 Sum_probs=2.3
Q ss_pred hHHHHH
Q psy8075 799 RLRKLL 804 (1074)
Q Consensus 799 ~l~~lL 804 (1074)
-|-.||
T Consensus 416 yFL~VL 421 (574)
T PF07462_consen 416 YFLDVL 421 (574)
T ss_pred HHHHHH
Confidence 343333
No 64
>PRK09039 hypothetical protein; Validated
Probab=64.60 E-value=91 Score=36.22 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=8.5
Q ss_pred ChhhHHHHHHHhccC
Q psy8075 371 AYPHFLSLLHHCILL 385 (1074)
Q Consensus 371 a~~~~lSiLQhLLli 385 (1074)
.-|-|...|-.||++
T Consensus 15 ~wpg~vd~~~~ll~~ 29 (343)
T PRK09039 15 YWPGFVDALSTLLLV 29 (343)
T ss_pred CCchHHHHHHHHHHH
Confidence 445566666665554
No 65
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.17 E-value=1e+02 Score=35.43 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q psy8075 439 VAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKH 513 (1074)
Q Consensus 439 ~~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~ 513 (1074)
..+.+++++++++..++.+++..++.+.....++-+..-...+.+.-++.....++.....++.....++..|+.
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666655555444444444444555555555555556666666666666666554
No 66
>KOG1984|consensus
Probab=64.10 E-value=27 Score=44.19 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=8.0
Q ss_pred ccccchhhhhhHHH
Q psy8075 677 LSVIDGRRAQNCTI 690 (1074)
Q Consensus 677 isvLD~kraqNi~I 690 (1074)
+.++|+-|.--|+|
T Consensus 352 mqF~~~gr~f~Cn~ 365 (1007)
T KOG1984|consen 352 MQFIDGGRKFICNF 365 (1007)
T ss_pred eEEecCCceEEecC
Confidence 55666665555554
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.41 E-value=60 Score=34.86 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy8075 447 ELEMENVDLSNRLAK 461 (1074)
Q Consensus 447 el~~e~~eL~~kl~~ 461 (1074)
+++++..+++.++.+
T Consensus 97 ~le~el~~l~~~l~~ 111 (206)
T PRK10884 97 DLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 68
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.17 E-value=48 Score=35.27 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy8075 439 VAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRI 483 (1074)
Q Consensus 439 ~~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l 483 (1074)
..++++++++.++..+|..++.+++.+++..+..+..+......+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665555554444444444443333
No 69
>KOG0566|consensus
Probab=60.79 E-value=18 Score=46.06 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHH--------HhccCCchhHHHHHHhhHHHHccc
Q psy8075 212 IKTKIAVLEILGA--------VCLIPGGHKKVLDAMSHYQRFCNE 248 (1074)
Q Consensus 212 ~~tr~~v~elLaa--------vc~~~~Gh~~VL~Al~~~~~~~~e 248 (1074)
-+.|..++++|.. +.+++.-|+.|+..|..-.....+
T Consensus 489 D~~kQeaIdlLLg~l~~~q~~v~L~dpv~~yv~~~L~er~~eyt~ 533 (1080)
T KOG0566|consen 489 DKEKQEAIDLLLGRLPSAQSAVILYDPVHEYVLKELRERRSEYTE 533 (1080)
T ss_pred chhhHHHHHHHHhcCccccchhhhcCchhHHHHHHHHHhhhhhcc
Confidence 3455666666654 223334577787777654443333
No 70
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=60.68 E-value=29 Score=44.78 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=7.3
Q ss_pred cCCHHHHHHHhh
Q psy8075 638 SMELEVVDKLFC 649 (1074)
Q Consensus 638 ~ld~~~lE~lF~ 649 (1074)
.++|.+|...+.
T Consensus 236 ~l~f~ef~~ay~ 247 (1228)
T PRK12270 236 TMDFAQFWAAYE 247 (1228)
T ss_pred cCCHHHHHHHHH
Confidence 456766666654
No 71
>PRK11637 AmiB activator; Provisional
Probab=59.67 E-value=3.7e+02 Score=32.13 Aligned_cols=27 Identities=4% Similarity=0.132 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 922 LTSATCRLSEIEDLFQDMKTRFDRAVR 948 (1074)
Q Consensus 922 ~~~a~~~~~~L~~~~~~~~~~~~~l~~ 948 (1074)
+.....++..++..+....+.+...+.
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444
No 72
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=57.60 E-value=94 Score=30.40 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHHHHHHHH
Q psy8075 925 ATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEA 976 (1074)
Q Consensus 925 a~~~~~~L~~~~~~~~~~~~~l~~yfGEd~~~~~~~eFF~~~~~F~~~f~~a 976 (1074)
...++..|+..+..++..|..++..|||.. -..++.=..+.+....|+.-
T Consensus 66 ~~~~~~~L~~el~~l~~ry~t~LellGEK~--E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 66 LKKEVEELEQELEELQQRYQTLLELLGEKS--EEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999999964 34567777777777777543
No 73
>KOG0559|consensus
Probab=55.89 E-value=26 Score=39.90 Aligned_cols=16 Identities=6% Similarity=0.304 Sum_probs=10.2
Q ss_pred hccCCHHHHHHHhhhh
Q psy8075 636 YASMELEVVDKLFCAY 651 (1074)
Q Consensus 636 ~~~ld~~~lE~lF~~~ 651 (1074)
|+++|+..+-+|=+.+
T Consensus 257 FNEvDMS~lm~mRk~y 272 (457)
T KOG0559|consen 257 FNEVDMSNLMEMRKQY 272 (457)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 5677777766665544
No 74
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=54.68 E-value=2.8e+02 Score=33.97 Aligned_cols=153 Identities=15% Similarity=0.190 Sum_probs=90.8
Q ss_pred HHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhh
Q psy8075 128 ILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSL 207 (1074)
Q Consensus 128 ~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL 207 (1074)
++..|...++++.. =++-+.+.+-+..++..|. ..+..+...++++|+.|..+..|++.++...- +..|...+
T Consensus 97 ~l~~l~~~~~~~~~-~~~~~~~~~l~~~i~~~L~-----~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~ 169 (503)
T PF10508_consen 97 ALKQLGRIARHSEG-AAQLLVDNELLPLIIQCLR-----DPDLSVAKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLM 169 (503)
T ss_pred HHHHHHHHhcCCHH-HHHHhcCccHHHHHHHHHc-----CCcHHHHHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHH
Confidence 34445555554422 2333333333333333332 12334556789999999999999998875554 78888888
Q ss_pred cCCChhhHHHHHHHHHHHhccCCchhHHHHHHhhHHHHcccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcCC
Q psy8075 208 STENIKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYG 287 (1074)
Q Consensus 208 ~s~~~~tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~~ 287 (1074)
..++-.+|.-|+++++.+|-... ..+++. .+.+=|..++..|+. +++-++.+++-++--|..+
T Consensus 170 ~~~~~~vR~Rv~el~v~i~~~S~---~~~~~~-------~~sgll~~ll~eL~~------dDiLvqlnalell~~La~~- 232 (503)
T PF10508_consen 170 SQSSDIVRCRVYELLVEIASHSP---EAAEAV-------VNSGLLDLLLKELDS------DDILVQLNALELLSELAET- 232 (503)
T ss_pred hccCHHHHHHHHHHHHHHHhcCH---HHHHHH-------HhccHHHHHHHHhcC------ccHHHHHHHHHHHHHHHcC-
Confidence 88787788889999988886532 122222 223446677777753 3566677777777666653
Q ss_pred CCCCCHHHHHHHHHHHHHhCcHHHHH
Q psy8075 288 PGQHSLEFRLHLRYEVIMLGIQPIID 313 (1074)
Q Consensus 288 ~~~~dl~~R~~lR~Ef~~~GL~~~l~ 313 (1074)
.. -..-+.+.|+.+.|.
T Consensus 233 --~~-------g~~yL~~~gi~~~L~ 249 (503)
T PF10508_consen 233 --PH-------GLQYLEQQGIFDKLS 249 (503)
T ss_pred --hh-------HHHHHHhCCHHHHHH
Confidence 11 233445666655444
No 75
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=54.09 E-value=3e+02 Score=29.25 Aligned_cols=11 Identities=36% Similarity=0.280 Sum_probs=7.3
Q ss_pred hhHHHHHHHHh
Q psy8075 423 INVKKVVHLLA 433 (1074)
Q Consensus 423 ~~v~~li~~l~ 433 (1074)
|||..+..+|.
T Consensus 86 FnV~~l~~RL~ 96 (190)
T PF05266_consen 86 FNVKFLRSRLN 96 (190)
T ss_pred CccHHHHHHHH
Confidence 77777766554
No 76
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.90 E-value=39 Score=42.44 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=5.9
Q ss_pred cHHHHHHHHHh
Q psy8075 152 GLLTLLEYLKN 162 (1074)
Q Consensus 152 Gl~~L~~~L~~ 162 (1074)
+...|+.+|+.
T Consensus 137 a~naLLK~LEe 147 (620)
T PRK14948 137 AFNALLKTLEE 147 (620)
T ss_pred HHHHHHHHHhc
Confidence 44556665553
No 77
>PHA03378 EBNA-3B; Provisional
Probab=53.66 E-value=68 Score=39.50 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhc
Q psy8075 273 KTALMSFLNAVLS 285 (1074)
Q Consensus 273 ~~a~m~lIN~lv~ 285 (1074)
+++.|.|+..|-.
T Consensus 278 RVaFveFmG~L~k 290 (991)
T PHA03378 278 RVAFVEFVGWLCK 290 (991)
T ss_pred hhHHHHHHHHHhc
Confidence 5667777766654
No 78
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=53.02 E-value=75 Score=41.33 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=11.9
Q ss_pred CCCCCChhhhHHHHHHH---HHHHHHHHH
Q psy8075 953 DNSSIQPEDFFVIFDTF---LTTLNEAKL 978 (1074)
Q Consensus 953 d~~~~~~~eFF~~~~~F---~~~f~~a~~ 978 (1074)
||+-.+|. .+.++..- .+.|.++.-
T Consensus 763 dPSmtqP~-mY~~i~~~~svrk~yte~Li 790 (1228)
T PRK12270 763 DPSMTQPL-MYDLIDAKRSVRKLYTEALI 790 (1228)
T ss_pred CcccCCch-hhhhhhhcchHHHHHHHHHh
Confidence 45444554 55555432 344554443
No 79
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=52.94 E-value=1.5e+02 Score=34.35 Aligned_cols=217 Identities=17% Similarity=0.242 Sum_probs=105.9
Q ss_pred CCChHHHHHHHhcccCCC--CC-CCChhhhhhHHHHHHHHhhhhccC-chhhHHHhh--------hcCcHHHHHHHHHhc
Q psy8075 96 PDNPEQYIEQLRNFKSSP--LT-EHDDTEIKSRTRILDSLRTALRTQ-PHSFVLRFI--------ECEGLLTLLEYLKNL 163 (1074)
Q Consensus 96 ~~~P~~yi~~L~~~~~~~--~~-~~~~~~~~~~~~~l~~L~v~Lrt~-~~~Wv~~Fi--------~~~Gl~~L~~~L~~~ 163 (1074)
..+|.++|+.++.....- .. ++.....+...+.|..++..|=.. .-.|..+.+ ..+=+..|+..|..+
T Consensus 9 ~KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L 88 (335)
T PF08569_consen 9 PKTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKL 88 (335)
T ss_dssp ---HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS
T ss_pred CCCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhC
Confidence 357999999887643110 00 011113456778888888887655 345765543 334445566666666
Q ss_pred ccccCCcchhHHHHHHHHHHhcCh------hhHHHhhcC-ccHHHHHHHhhcCCChh--hHHHHH-----HHHHHHhcc-
Q psy8075 164 DHYSGQTSLHSSIIGCIKALMNNS------TGRSHVLGY-PGAIDIIAQSLSTENIK--TKIAVL-----EILGAVCLI- 228 (1074)
Q Consensus 164 ~~~~~~~~~~~~~l~ClkalmN~~------~G~~~vl~~-~~~i~~la~sL~s~~~~--tr~~v~-----elLaavc~~- 228 (1074)
+-+... .+..++.+++-.+ ...+++..| |+.+..|..+-..+.+- +=...- |-|+.+.+.
T Consensus 89 ~fEsrK-----dv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~ 163 (335)
T PF08569_consen 89 DFESRK-----DVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYS 163 (335)
T ss_dssp -HHHHH-----HHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTS
T ss_pred CCcccc-----cHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCc
Confidence 544322 2333344444333 357789999 99999999988877621 111111 222322222
Q ss_pred -----------CCchhHHHHHHhhHHHHccc------------ccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhc
Q psy8075 229 -----------PGGHKKVLDAMSHYQRFCNE------------RSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLS 285 (1074)
Q Consensus 229 -----------~~Gh~~VL~Al~~~~~~~~e------------~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~ 285 (1074)
....+..-+||..|+....- ..+|-.....|-.+ +|+--+.-.+-|++-|+-
T Consensus 164 ~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-----~NYvtkrqslkLL~elll 238 (335)
T PF08569_consen 164 ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-----SNYVTKRQSLKLLGELLL 238 (335)
T ss_dssp GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT------SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC-----CCeEeehhhHHHHHHHHH
Confidence 14577888888888764322 12333333333222 122223345667777774
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcHHHHHHHhccCchHHHHHHHHH
Q psy8075 286 YGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRTHENETLDRHLDFF 330 (1074)
Q Consensus 286 ~~~~~~dl~~R~~lR~Ef~~~GL~~~l~~Lr~~~~~~L~~qi~~f 330 (1074)
. .. ++.+..|+-=....|.-+|.-|++ ..=.+|++.|
T Consensus 239 d---r~--n~~vm~~yi~~~~nLkl~M~lL~d---~sk~Iq~eAF 275 (335)
T PF08569_consen 239 D---RS--NFNVMTRYISSPENLKLMMNLLRD---KSKNIQFEAF 275 (335)
T ss_dssp S---GG--GHHHHHHHTT-HHHHHHHHHHTT----S-HHHHHHHH
T ss_pred c---hh--HHHHHHHHHCCHHHHHHHHHHhcC---cchhhhHHHH
Confidence 2 22 344445544344455555655553 2223566555
No 80
>PHA03211 serine/threonine kinase US3; Provisional
Probab=52.04 E-value=13 Score=44.90 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=7.5
Q ss_pred HhHHHHHHHHHHHhh
Q psy8075 782 PKIKSVMEASREVTR 796 (1074)
Q Consensus 782 ~~l~~v~~A~~~l~~ 796 (1074)
.-+..+..|+..|.+
T Consensus 264 ~i~~qi~~aL~yLH~ 278 (461)
T PHA03211 264 AVARQLLSAIDYIHG 278 (461)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555543
No 81
>KOG4500|consensus
Probab=51.89 E-value=71 Score=37.59 Aligned_cols=110 Identities=14% Similarity=0.258 Sum_probs=73.8
Q ss_pred hHHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHH
Q psy8075 143 FVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEIL 222 (1074)
Q Consensus 143 Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elL 222 (1074)
-+..|++.+=+..|++.|.+-+..+.+-..+|.|+..||.+|=-.....+++.- ..+..|-.-|-...+++ ++.+|
T Consensus 348 ~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~a-GvteaIL~~lk~~~ppv---~fkll 423 (604)
T KOG4500|consen 348 ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPA-GVTEAILLQLKLASPPV---TFKLL 423 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcccc-chHHHHHHHHHhcCCcc---hHHHH
Confidence 345566667778888888775556666778999999999999776666666432 23444444455545443 56677
Q ss_pred HHHhccCCchhHHHHHHhhHHHHcccccchHHHHHHhhhc
Q psy8075 223 GAVCLIPGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKS 262 (1074)
Q Consensus 223 aavc~~~~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~ 262 (1074)
+.+-+.-+|.+.+..-+ .+...+|+.+|+|-+.+
T Consensus 424 gTlrM~~d~qe~~a~eL------~kn~~l~ekLv~Wsks~ 457 (604)
T KOG4500|consen 424 GTLRMIRDSQEYIACEL------AKNPELFEKLVDWSKSP 457 (604)
T ss_pred HHHHHHHhchHHHHHHH------hcCHHHHHHHHHhhhCC
Confidence 77777666777553333 35578999999987654
No 82
>KOG1062|consensus
Probab=50.60 E-value=4e+02 Score=34.11 Aligned_cols=90 Identities=22% Similarity=0.262 Sum_probs=60.4
Q ss_pred cchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHHhccCCchhHHHHHHhhHHHHcccc
Q psy8075 170 TSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQRFCNER 249 (1074)
Q Consensus 170 ~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~~~~e~ 249 (1074)
..|.||||+||-.|--+. |+.-+ +|++|+.-|.++...+|=.++..|.-+.-.. +..|.+- +
T Consensus 291 nAILYE~V~TI~~I~~~~-~Lrvl-----ainiLgkFL~n~d~NirYvaLn~L~r~V~~d--~~avqrH----r------ 352 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRSNS-GLRVL-----AINILGKFLLNRDNNIRYVALNMLLRVVQQD--PTAVQRH----R------ 352 (866)
T ss_pred hHHHHHHHHHHHhccCCc-hHHHH-----HHHHHHHHhcCCccceeeeehhhHHhhhcCC--cHHHHHH----H------
Confidence 458999999988775554 66544 6899999999998889988888886544432 3333211 1
Q ss_pred cchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcC
Q psy8075 250 SRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSY 286 (1074)
Q Consensus 250 ~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~ 286 (1074)
.+|++.|+.. ++.++.-+|=|.=+|||.
T Consensus 353 ---~tIleCL~Dp------D~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 353 ---STILECLKDP------DVSIKRRALELSYALVNE 380 (866)
T ss_pred ---HHHHHHhcCC------cHHHHHHHHHHHHHHhcc
Confidence 1677777643 345555566777777763
No 83
>KOG0391|consensus
Probab=49.97 E-value=55 Score=42.97 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=7.4
Q ss_pred HhhHHHHHhhhc
Q psy8075 335 HEDESELARKYE 346 (1074)
Q Consensus 335 ~eDe~el~~~~~ 346 (1074)
-|+-++|.+|||
T Consensus 1312 vEqRQaLmerFN 1323 (1958)
T KOG0391|consen 1312 VEQRQALMERFN 1323 (1958)
T ss_pred HHHHHHHHHHhc
Confidence 356666666665
No 84
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=49.08 E-value=1.7e+02 Score=33.51 Aligned_cols=46 Identities=28% Similarity=0.428 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy8075 439 VAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIK 484 (1074)
Q Consensus 439 ~~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~ 484 (1074)
..+.++++.++++..++.+++.+++++.....+++..+..+...+.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666667777777777777766666666665555554443
No 85
>KOG0301|consensus
Probab=48.72 E-value=74 Score=39.38 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=46.2
Q ss_pred CCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHH---HhhcCCChhh--HHHHHHHHHHHhcc-----CCchhHHHH
Q psy8075 168 GQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIA---QSLSTENIKT--KIAVLEILGAVCLI-----PGGHKKVLD 237 (1074)
Q Consensus 168 ~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la---~sL~s~~~~t--r~~v~elLaavc~~-----~~Gh~~VL~ 237 (1074)
.+...+...+|||--+|++..|.+-+.++-+.+..-+ .++...++.. .++++- -++|+. -+|.+.++.
T Consensus 600 ~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln--~sv~l~~~~~~~~~~~~l~~ 677 (745)
T KOG0301|consen 600 ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALN--YSVLLIQDNEQLEGKEVLLS 677 (745)
T ss_pred cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHH--HHHHHHhcccccchHHHHHH
Confidence 4455677899999999999999999998876553322 2333333322 222222 255554 257777888
Q ss_pred HHhhH
Q psy8075 238 AMSHY 242 (1074)
Q Consensus 238 Al~~~ 242 (1074)
|+...
T Consensus 678 ai~~~ 682 (745)
T KOG0301|consen 678 AISTL 682 (745)
T ss_pred HHHhh
Confidence 87654
No 86
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.42 E-value=1.2e+02 Score=38.07 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=17.6
Q ss_pred HHHHHHhhhhccCch--hhHHHhhhcC--cHHHHHHHHH
Q psy8075 127 RILDSLRTALRTQPH--SFVLRFIECE--GLLTLLEYLK 161 (1074)
Q Consensus 127 ~~l~~L~v~Lrt~~~--~Wv~~Fi~~~--Gl~~L~~~L~ 161 (1074)
.++..|+.+++++.+ +|+ |.... |=..+..+|.
T Consensus 23 ~i~~~L~~~i~~~ri~ha~L--f~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 23 HITHTIQNSLRMDRVGHGYI--FSGLRGVGKTTAARVFA 59 (620)
T ss_pred HHHHHHHHHHHcCCCCeeEE--EECCCCCCHHHHHHHHH
Confidence 345567777777644 343 44333 4455555554
No 87
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=48.19 E-value=1.9e+02 Score=32.36 Aligned_cols=118 Identities=20% Similarity=0.298 Sum_probs=71.0
Q ss_pred HhhhHhHHHHHHHHHHHhhcHhHHHHHHHHHHhccccCCCCC--CCccceeccccccccccccC-------CCCCcchHH
Q psy8075 778 SDIEPKIKSVMEASREVTRSRRLRKLLELVLALGNYMNKGAR--GNASGFRLTSLNKLVDTKSS-------SSRGVTLLH 848 (1074)
Q Consensus 778 ~~l~~~l~~v~~A~~~l~~S~~l~~lL~~IL~iGNymN~g~r--g~A~GFkL~sL~KL~dtKs~-------~d~k~TLLh 848 (1074)
..|+=+...+..| +.-..+.+|.+.=.+=+.|+.... ....+|+++.=.|+.|+|.. ++.+.+|.+
T Consensus 64 a~IKLN~KkLY~A-----DGyAVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~Lyd 138 (267)
T PF10234_consen 64 ARIKLNPKKLYQA-----DGYAVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYD 138 (267)
T ss_pred hheeecHHHHHHh-----hHHHHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555443 233445566666666677776521 22355666665788888862 134567777
Q ss_pred HHHHHHHH--hhhhccchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 849 YLVELAEK--RFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREI 900 (1074)
Q Consensus 849 ylv~~v~~--~~p~ll~f~~eL~~v~~Aakvs~~~l~~d~~~l~~~l~~~~~el 900 (1074)
.|-+.+.. .....+.-.-|+..++.+-+-.+..+..++.++++.+..+..+-
T Consensus 139 lL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de 192 (267)
T PF10234_consen 139 LLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDE 192 (267)
T ss_pred HHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655432 22334445567777887777777777777777777777776553
No 88
>KOG0307|consensus
Probab=47.98 E-value=73 Score=41.52 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=4.6
Q ss_pred chHHHHHHHHH
Q psy8075 320 NETLDRHLDFF 330 (1074)
Q Consensus 320 ~~~L~~qi~~f 330 (1074)
.++++.+.+.+
T Consensus 450 k~~~e~~~~~~ 460 (1049)
T KOG0307|consen 450 KDDLEADQDKN 460 (1049)
T ss_pred ccchhhhhhhc
Confidence 34444444444
No 89
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.97 E-value=2.8e+02 Score=27.18 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 436 EEIVAAKKKADELEMENVDLSNRLAKKEQEL 466 (1074)
Q Consensus 436 ~e~~~~~~~~eel~~e~~eL~~kl~~~e~el 466 (1074)
.++..+++++..+..+++.+..++.++..+.
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666665555544433
No 90
>KOG1832|consensus
Probab=47.28 E-value=60 Score=41.22 Aligned_cols=105 Identities=14% Similarity=0.249 Sum_probs=70.5
Q ss_pred HHHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccH-----HH
Q psy8075 127 RILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGA-----ID 201 (1074)
Q Consensus 127 ~~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~-----i~ 201 (1074)
.++..|-..+-.+ -|.-.|++.+|+..|+.+=+- +.--|-+-.||-.|--++-.+++|..||.. |+
T Consensus 372 ~~~k~~~~l~~h~--kfa~~fv~~~gi~kll~vpr~-------s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~ 442 (1516)
T KOG1832|consen 372 DVMKLICALAAHR--KFAAMFVERRGILKLLAVPRV-------SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVK 442 (1516)
T ss_pred HHHHHHHHHHHhh--HHHHHHHHhhhhHHHhcCCCc-------hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHH
Confidence 3444444444444 788999999999998876221 111345667999999999889999999974 23
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHhccCCchhHHHHHHhhHHH
Q psy8075 202 IIAQSLSTENIKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQR 244 (1074)
Q Consensus 202 ~la~sL~s~~~~tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~ 244 (1074)
.-.-.|+..+-..+.-.. ++.++|++ ...||+||+.|..
T Consensus 443 ~~~~l~~cs~~~~~~~~~-~ff~~~f~---frail~~fd~~d~ 481 (1516)
T KOG1832|consen 443 LAIELLDCSQDQARKNSA-LFFAAAFV---FRAILDAFDAQDS 481 (1516)
T ss_pred HHHHHHhcchhhccchHH-HHHHHHHH---HHHHHHHHhhhhH
Confidence 333455666555554443 45677876 7889999998753
No 91
>KOG0559|consensus
Probab=47.06 E-value=61 Score=37.09 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHcC
Q psy8075 697 MTDEEISKAILSM 709 (1074)
Q Consensus 697 ~~~~ei~~aI~~~ 709 (1074)
|++.+|-..|..+
T Consensus 342 Mn~adIE~~i~~L 354 (457)
T KOG0559|consen 342 MNFADIEKTIAGL 354 (457)
T ss_pred ccHHHHHHHHHHH
Confidence 3444444444433
No 92
>KOG0162|consensus
Probab=47.06 E-value=48 Score=41.13 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCC------------CCCCCC----CCCCCCCC----CCCCCCCCCCCCCCCCC
Q psy8075 530 NSGSVPDDTKAVGLSRSGGREEPSSPRKP------------EAPSSC----IPPPPPPA----SLPPPPPPRRSSDLPYL 589 (1074)
Q Consensus 530 ~~~~~p~~~~~~~~~~~~~~~~ppppppp------------pp~~~~----ppppp~pg----~pPPPPpppp~~~~ppp 589 (1074)
++.+|.....+.+.+.+.......|||++ |++.+. -|+...+| +..|--||||.|.||||
T Consensus 964 ~~~~paA~~~p~p~~~~~~~~~~~~~p~~~s~~~s~~~~~~p~s~p~~~~~~~~~~~~~~~~~~s~~q~~pP~~g~P~Pp 1043 (1106)
T KOG0162|consen 964 NGVSPAAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQPSARPSSKPTVFTKVPDAGASGNGRKPSGPQRPPPPAGRPKPP 1043 (1106)
T ss_pred CCCCccccCCCCCCCCCCCccccCCCCCCcccccccccccCCCCCCccccccCcccCcccccCCCCCCCCCCCCCCCCcc
Q ss_pred CCCCCC
Q psy8075 590 TCPRPL 595 (1074)
Q Consensus 590 p~~~~~ 595 (1074)
||+.+.
T Consensus 1044 Pp~~~~ 1049 (1106)
T KOG0162|consen 1044 PPAKPP 1049 (1106)
T ss_pred CCCCCC
No 93
>KOG1984|consensus
Probab=46.35 E-value=79 Score=40.26 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=6.6
Q ss_pred HHHHHHHhcCCC
Q psy8075 718 DMLEQLLKFTPN 729 (1074)
Q Consensus 718 e~l~~Llk~lPt 729 (1074)
+.|+.++..+|-
T Consensus 441 e~ik~~l~~lp~ 452 (1007)
T KOG1984|consen 441 EAIKSVLEDLPR 452 (1007)
T ss_pred HHHHHHHhhcCc
Confidence 445555555664
No 94
>KOG0307|consensus
Probab=46.24 E-value=1e+02 Score=40.33 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=7.1
Q ss_pred HHHHhhcHhHHHHHHHHHH
Q psy8075 791 SREVTRSRRLRKLLELVLA 809 (1074)
Q Consensus 791 ~~~l~~S~~l~~lL~~IL~ 809 (1074)
|.+.-++..|--.|..+|.
T Consensus 1025 tt~~~E~s~wmp~lK~ll~ 1043 (1049)
T KOG0307|consen 1025 TTEFDECSSWMPGLKRLLQ 1043 (1049)
T ss_pred hcchhhhhhHHHHHHHHHH
Confidence 3333333333333333333
No 95
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=46.21 E-value=47 Score=41.23 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=5.8
Q ss_pred hhhHHHHHHHH
Q psy8075 46 TNELNTMFEEL 56 (1074)
Q Consensus 46 ~~ei~~~F~~l 56 (1074)
+++|...|.+.
T Consensus 14 e~~L~~~F~~~ 24 (562)
T TIGR01628 14 EAKLYDLFKPF 24 (562)
T ss_pred HHHHHHHHHhc
Confidence 45555555543
No 96
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=45.88 E-value=17 Score=26.71 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhccCchhhHHHhhhcCc
Q psy8075 126 TRILDSLRTALRTQPHSFVLRFIECEG 152 (1074)
Q Consensus 126 ~~~l~~L~v~Lrt~~~~Wv~~Fi~~~G 152 (1074)
-.+|..+.-.|.+|.-+||+.|+..+|
T Consensus 6 D~lLDeId~vLe~NAe~FV~~fVQKGG 32 (33)
T TIGR03687 6 DDLLDEIDGVLESNAEEFVRGFVQKGG 32 (33)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHccC
Confidence 357888888999999999999998777
No 97
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=45.09 E-value=7.1 Score=44.45 Aligned_cols=7 Identities=14% Similarity=0.524 Sum_probs=2.6
Q ss_pred CCChhhH
Q psy8075 369 TAAYPHF 375 (1074)
Q Consensus 369 t~a~~~~ 375 (1074)
++...||
T Consensus 127 s~~fNHL 133 (312)
T PF01213_consen 127 SKFFNHL 133 (312)
T ss_dssp STTHHHH
T ss_pred CchHHHH
Confidence 3333333
No 98
>PHA03369 capsid maturational protease; Provisional
Probab=44.90 E-value=3e+02 Score=33.90 Aligned_cols=10 Identities=20% Similarity=0.179 Sum_probs=6.7
Q ss_pred HHHHHhcCCC
Q psy8075 279 FLNAVLSYGP 288 (1074)
Q Consensus 279 lIN~lv~~~~ 288 (1074)
-+|+||..+.
T Consensus 177 ~VNaLv~I~n 186 (663)
T PHA03369 177 GVNALVGIDN 186 (663)
T ss_pred eeeeEEeecC
Confidence 5788886543
No 99
>KOG0163|consensus
Probab=44.80 E-value=2.3e+02 Score=35.65 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=18.4
Q ss_pred HHHHHHhhHHHHc-ccccchHHHHHH
Q psy8075 234 KVLDAMSHYQRFC-NERSRFQGIVND 258 (1074)
Q Consensus 234 ~VL~Al~~~~~~~-~e~~RF~~lv~~ 258 (1074)
-||+||-+.+... +...||-.+|+.
T Consensus 187 PiLEAFGNAKT~RNNNSSRFGKFvei 212 (1259)
T KOG0163|consen 187 PILEAFGNAKTLRNNNSSRFGKFVEI 212 (1259)
T ss_pred hHHHHhccchhhccCChhhccceEEE
Confidence 3788888876554 557899888874
No 100
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=44.28 E-value=51 Score=40.92 Aligned_cols=8 Identities=25% Similarity=0.484 Sum_probs=3.2
Q ss_pred CCHHHHHH
Q psy8075 697 MTDEEISK 704 (1074)
Q Consensus 697 ~~~~ei~~ 704 (1074)
|+..||..
T Consensus 535 ~~~~~~~~ 542 (562)
T TIGR01628 535 MDNSELLH 542 (562)
T ss_pred CCHHHHHH
Confidence 33444433
No 101
>KOG1077|consensus
Probab=43.87 E-value=7.9e+02 Score=31.23 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=39.7
Q ss_pred HHhcChhhHHHhhcCccHHHHHHHhhcC-CChhhHHHHHHHHHHHhccCCchhHHHHHHhh
Q psy8075 182 ALMNNSTGRSHVLGYPGAIDIIAQSLST-ENIKTKIAVLEILGAVCLIPGGHKKVLDAMSH 241 (1074)
Q Consensus 182 almN~~~G~~~vl~~~~~i~~la~sL~s-~~~~tr~~v~elLaavc~~~~Gh~~VL~Al~~ 241 (1074)
.|..+....+.|-.| ...|..||.+ +....|.-+++||-++|.+.+...+|-+-+.+
T Consensus 355 ~L~ss~~s~davK~h---~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqY 412 (938)
T KOG1077|consen 355 KLASSEFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQY 412 (938)
T ss_pred HHHhccchHHHHHHH---HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 344445555555555 4567788984 47999999999999999998766666444443
No 102
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.79 E-value=3.2e+02 Score=29.36 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy8075 443 KKADELEMENVDLSN 457 (1074)
Q Consensus 443 ~~~eel~~e~~eL~~ 457 (1074)
+..++++.+.++++.
T Consensus 135 e~~ee~kekl~E~~~ 149 (290)
T COG4026 135 EDYEELKEKLEELQK 149 (290)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 103
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.08 E-value=1.8e+02 Score=32.31 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH--HHHhhhHHHHHHHHHHHHHHHH
Q psy8075 423 INVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKK------------EQEL--DQKTQEKEDLDESLSRIKDRLE 488 (1074)
Q Consensus 423 ~~v~~li~~l~~~~e~~~~~~~~eel~~e~~eL~~kl~~~------------e~el--~~k~~e~e~l~~~l~~l~~~l~ 488 (1074)
+-|.+|-..|. +...++.+-+-|+.+|..+|.+. |.++ ...++|+..|++.+++++..|-
T Consensus 68 V~iRHLkakLk------es~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 68 VCIRHLKAKLK------ESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 55666644443 33334444444555555555433 2232 2334555567777777777665
Q ss_pred HHHhhhH
Q psy8075 489 KETAGHL 495 (1074)
Q Consensus 489 ~~~~~~~ 495 (1074)
..-+..+
T Consensus 142 ekDkGiQ 148 (305)
T PF15290_consen 142 EKDKGIQ 148 (305)
T ss_pred hhhhhHH
Confidence 4433333
No 104
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=42.82 E-value=4.3e+02 Score=30.31 Aligned_cols=45 Identities=29% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy8075 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDES 479 (1074)
Q Consensus 435 ~~e~~~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~ 479 (1074)
.+++..+++++.+...++.....++.+++.++......++.....
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~ 247 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666555555555544443333
No 105
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.76 E-value=1.8e+02 Score=36.59 Aligned_cols=11 Identities=9% Similarity=0.003 Sum_probs=4.7
Q ss_pred HHHHHHHHhcC
Q psy8075 176 IIGCIKALMNN 186 (1074)
Q Consensus 176 ~l~ClkalmN~ 186 (1074)
+.+||..-+|.
T Consensus 54 lA~~lAk~L~c 64 (620)
T PRK14954 54 AARVFAKAVNC 64 (620)
T ss_pred HHHHHHHHhCC
Confidence 44444444443
No 106
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.68 E-value=2.7e+02 Score=31.04 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy8075 457 NRLAKKEQELDQKTQEKEDLDESLSRIKDR 486 (1074)
Q Consensus 457 ~kl~~~e~el~~k~~e~e~l~~~l~~l~~~ 486 (1074)
.+|.+.+..+..+..|+++|+..|.+|++.
T Consensus 75 akLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444555556666666666666543
No 107
>KOG2002|consensus
Probab=42.60 E-value=9.3e+02 Score=31.71 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 876 KVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGD-RF-LPVMKEFLTSATCRLSEIEDLFQDMKTRF 943 (1074)
Q Consensus 876 kvs~~~l~~d~~~l~~~l~~~~~el~~~~~~~~~~~D-~f-~~~m~~F~~~a~~~~~~L~~~~~~~~~~~ 943 (1074)
+-.++++...+.+|+.+++..+. |... +| +| ..++..-+..+..-+........+++..+
T Consensus 772 k~t~eev~~a~~~le~a~r~F~~-ls~~-------~d~r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~ 833 (1018)
T KOG2002|consen 772 KRTLEEVLEAVKELEEARRLFTE-LSKN-------GDKRISKTVIAQEAQLCKDLLKQALEHVAQAQEED 833 (1018)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH-HHhc-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34566666666666666555543 2111 11 23 23555555555555555555555554444
No 108
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=42.52 E-value=96 Score=32.62 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=35.6
Q ss_pred HHHHHHHHhcChhhHHHhh-cCccHHHHHHHhhcCCChhhHHHHHHHHHHHhcc
Q psy8075 176 IIGCIKALMNNSTGRSHVL-GYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLI 228 (1074)
Q Consensus 176 ~l~ClkalmN~~~G~~~vl-~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~~ 228 (1074)
..++++-++.. -|-+.++ --|+.|..|-.+|++.+..+...++++|-.++..
T Consensus 58 A~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 58 ARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 34444444444 2222333 3356778888999999999999999999888664
No 109
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=41.45 E-value=62 Score=45.75 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=73.6
Q ss_pred chhhHHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHH
Q psy8075 140 PHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVL 219 (1074)
Q Consensus 140 ~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~ 219 (1074)
...|..-++..||+..|++.|..-+. .+..++...+.+|..|..+..+....+-+..+|..|+..|.+.++.++..++
T Consensus 133 D~~~~~I~v~~GaVp~Lv~lL~~gsk--~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa 210 (2102)
T PLN03200 133 DHVGSKIFSTEGVVPSLWDQLQPGNK--QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAA 210 (2102)
T ss_pred hhhhhhhhhhcCChHHHHHHHhCCch--hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 44688889999999999999886431 2233444567899999999998877665667999999999999999999999
Q ss_pred HHHHHHhcc-CCchhHHH
Q psy8075 220 EILGAVCLI-PGGHKKVL 236 (1074)
Q Consensus 220 elLaavc~~-~~Gh~~VL 236 (1074)
.+|+.+|.. +++...|+
T Consensus 211 ~aLa~Lass~ee~~~aVI 228 (2102)
T PLN03200 211 SLLARLMMAFESSISKVL 228 (2102)
T ss_pred HHHHHHHcCChHHHHHHH
Confidence 999888875 44444444
No 110
>KOG1103|consensus
Probab=40.94 E-value=6e+02 Score=29.05 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8075 445 ADELEMENVDLSNRLAK 461 (1074)
Q Consensus 445 ~eel~~e~~eL~~kl~~ 461 (1074)
++|+..++..|..+++.
T Consensus 247 i~EfdiEre~LRAel~r 263 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELER 263 (561)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 111
>KOG2759|consensus
Probab=40.83 E-value=6.9e+02 Score=29.72 Aligned_cols=161 Identities=12% Similarity=0.184 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHHhcc-CCc
Q psy8075 153 LLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLI-PGG 231 (1074)
Q Consensus 153 l~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~~-~~G 231 (1074)
++...++|...........--+.|++||-.++--+. ..+.+-..+++..+..+|.|...-+..+ .+++.++.+. =++
T Consensus 154 ~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQ-YqsifciWlLtFn~ 231 (442)
T KOG2759|consen 154 LDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQ-YQSIFCIWLLTFNP 231 (442)
T ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHH-HHHHHHHHHhhcCH
Confidence 555566665543332222234568899887776653 2333333445666666665333222222 1222222221 122
Q ss_pred hhHHHHHHhhHHHHcccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCcHHH
Q psy8075 232 HKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPI 311 (1074)
Q Consensus 232 h~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~~~~~~dl~~R~~lR~Ef~~~GL~~~ 311 (1074)
|-. +-+-. ..=|+.++..+..+. -+--+++.+..|.|.|=.. ++-+.+-.+-..+..+++...
T Consensus 232 ~~a--e~~~~-------~~li~~L~~Ivk~~~----KEKV~Rivlai~~Nll~k~----~~~~~~k~~~~~mv~~~v~k~ 294 (442)
T KOG2759|consen 232 HAA--EKLKR-------FDLIQDLSDIVKEST----KEKVTRIVLAIFRNLLDKG----PDRETKKDIASQMVLCKVLKT 294 (442)
T ss_pred HHH--HHHhh-------ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccC----chhhHHHHHHHHHHhcCchHH
Confidence 221 11111 122445555554331 0112456677789987642 345566666688999999999
Q ss_pred HHHHhc--cCchHHHHHHHHHHH
Q psy8075 312 IDKLRT--HENETLDRHLDFFEM 332 (1074)
Q Consensus 312 l~~Lr~--~~~~~L~~qi~~fe~ 332 (1074)
+..|.+ +++++|..-|+.-.+
T Consensus 295 l~~L~~rkysDEDL~~di~~L~e 317 (442)
T KOG2759|consen 295 LQSLEERKYSDEDLVDDIEFLTE 317 (442)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHH
Confidence 998854 678888777765543
No 112
>KOG0163|consensus
Probab=40.48 E-value=3.1e+02 Score=34.59 Aligned_cols=20 Identities=10% Similarity=0.351 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8075 931 EIEDLFQDMKTRFDRAVRLF 950 (1074)
Q Consensus 931 ~L~~~~~~~~~~~~~l~~yf 950 (1074)
++...|..+.+.|++++.-.
T Consensus 893 ~~~~~~d~~~~~~e~~~~~l 912 (1259)
T KOG0163|consen 893 EMNSEYDVAVKNYEKLVKRL 912 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666554
No 113
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=40.08 E-value=2.7e+02 Score=34.27 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhccchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 847 LHYLVELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREI 900 (1074)
Q Consensus 847 Lhylv~~v~~~~p~ll~f~~eL~~v~~Aakvs~~~l~~d~~~l~~~l~~~~~el 900 (1074)
++-+.+.+.+.+-+-..+.-+|..-.++.+|-+.+...++.+|+.+++.+++|-
T Consensus 380 l~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEK 433 (546)
T PF07888_consen 380 LQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEK 433 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555566666666666666777777777777777776666654
No 114
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.69 E-value=4.9e+02 Score=29.13 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy8075 358 MFNILRRK 365 (1074)
Q Consensus 358 v~~~l~~~ 365 (1074)
+.+.|..|
T Consensus 101 ilq~If~K 108 (269)
T PF05278_consen 101 ILQKIFEK 108 (269)
T ss_pred HHHHHHHh
Confidence 33344443
No 115
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.13 E-value=1.2e+02 Score=38.20 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.6
Q ss_pred HHHHHh
Q psy8075 643 VVDKLF 648 (1074)
Q Consensus 643 ~lE~lF 648 (1074)
.|.+.|
T Consensus 603 ~~a~~f 608 (620)
T PRK14948 603 NLADFF 608 (620)
T ss_pred HHHHHc
Confidence 344444
No 116
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.78 E-value=5e+02 Score=27.46 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhc
Q psy8075 395 HWLLLDRLAQQLTLQT 410 (1074)
Q Consensus 395 ~~~lld~~v~qivl~~ 410 (1074)
|-+.+|+++.||+++.
T Consensus 64 y~~~F~ELIRQVTi~C 79 (189)
T PF10211_consen 64 YSQCFDELIRQVTIDC 79 (189)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 4458899999998864
No 117
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=38.77 E-value=67 Score=34.27 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHHHHh
Q psy8075 351 ETKSATSMFNILRRKL 366 (1074)
Q Consensus 351 d~~~~~~v~~~l~~~~ 366 (1074)
+..+..++|++|..+|
T Consensus 42 s~q~~ee~F~~l~~sV 57 (205)
T PF12238_consen 42 SGQSDEEKFKSLFDSV 57 (205)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 3455666776666654
No 118
>KOG2160|consensus
Probab=38.49 E-value=6.9e+02 Score=29.01 Aligned_cols=165 Identities=21% Similarity=0.261 Sum_probs=96.6
Q ss_pred hhHHHHHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHH
Q psy8075 123 KSRTRILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDI 202 (1074)
Q Consensus 123 ~~~~~~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~ 202 (1074)
+.....|..|+-.. .+++=-..|+..+|+..|+.+|..-+..-+... ...+=. |+=||+.-=+.|+..- +...
T Consensus 98 e~ke~ald~Le~lv--e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~A-a~Vigt---~~qNNP~~Qe~v~E~~-~L~~ 170 (342)
T KOG2160|consen 98 EDKEDALDNLEELV--EDIDNANDLISLGGLVPLLGYLENSDAELRELA-ARVIGT---AVQNNPKSQEQVIELG-ALSK 170 (342)
T ss_pred HHHHHHHHHHHHHH--HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHH-HHHHHH---HHhcCHHHHHHHHHcc-cHHH
Confidence 34455666666655 456777889999999999998775432211000 111222 3457877777777666 7777
Q ss_pred HHHhhcCCC-hhhHHHHHHHHHHHhccCCchhHHHHHHhhHHHHcccccchHHHHHHhhhccCCccchhHHHHHHHHHHH
Q psy8075 203 IAQSLSTEN-IKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLN 281 (1074)
Q Consensus 203 la~sL~s~~-~~tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN 281 (1074)
|...|.+.. ..+|+.| |.|+|..=.-+..+...|.. ..| |+.|+..+... ..++.++.-++.||-
T Consensus 171 Ll~~ls~~~~~~~r~ka---L~AissLIRn~~~g~~~fl~---~~G----~~~L~~vl~~~----~~~~~lkrK~~~Ll~ 236 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKA---LFAISSLIRNNKPGQDEFLK---LNG----YQVLRDVLQSN----NTSVKLKRKALFLLS 236 (342)
T ss_pred HHHHHccCCCchHHHHH---HHHHHHHHhcCcHHHHHHHh---cCC----HHHHHHHHHcC----CcchHHHHHHHHHHH
Confidence 877777664 3333444 45555421112222233221 112 66777777643 135778888888998
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHhc
Q psy8075 282 AVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRT 317 (1074)
Q Consensus 282 ~lv~~~~~~~dl~~R~~lR~Ef~~~GL~~~l~~Lr~ 317 (1074)
.++.. +...+ .++...|+..++..+..
T Consensus 237 ~Ll~~-----~~s~~----d~~~~~~f~~~~~~l~~ 263 (342)
T KOG2160|consen 237 LLLQE-----DKSDE----DIASSLGFQRVLENLIS 263 (342)
T ss_pred HHHHh-----hhhhh----hHHHHhhhhHHHHHHhh
Confidence 88863 22222 26777788777766543
No 119
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.47 E-value=4.3e+02 Score=26.63 Aligned_cols=15 Identities=53% Similarity=0.594 Sum_probs=5.4
Q ss_pred HHHHHHHHhhhHHHH
Q psy8075 462 KEQELDQKTQEKEDL 476 (1074)
Q Consensus 462 ~e~el~~k~~e~e~l 476 (1074)
++.++...+.+.+.|
T Consensus 71 L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 71 LELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 120
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=38.45 E-value=2.5e+02 Score=26.82 Aligned_cols=70 Identities=27% Similarity=0.465 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy8075 442 KKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISEL 511 (1074)
Q Consensus 442 ~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l 511 (1074)
.+.-+.++....+++.++..++..++......+.|...-+.++..+..-........+.+.+|+.++.++
T Consensus 1 ~ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 1 KEEKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 121
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.37 E-value=2.9e+02 Score=24.55 Aligned_cols=12 Identities=33% Similarity=0.554 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy8075 444 KADELEMENVDL 455 (1074)
Q Consensus 444 ~~eel~~e~~eL 455 (1074)
+.+++++++..+
T Consensus 26 e~eeLke~n~~L 37 (72)
T PF06005_consen 26 ENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 333333333333
No 122
>KOG0566|consensus
Probab=37.55 E-value=44 Score=42.78 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHH
Q psy8075 274 TALMSFLNAVLSYGPGQHSLEFR 296 (1074)
Q Consensus 274 ~a~m~lIN~lv~~~~~~~dl~~R 296 (1074)
.+-++|||+=+. +|..+++.|
T Consensus 672 ~TsfCFv~SHlA--AG~snv~ER 692 (1080)
T KOG0566|consen 672 ATSFCFVCSHLA--AGQSNVEER 692 (1080)
T ss_pred cccEEEEecccc--cccchHhhh
Confidence 445566666553 344555555
No 123
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.50 E-value=4.9e+02 Score=26.98 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.0
Q ss_pred hhhhHHHHHHHH
Q psy8075 421 LKINVKKVVHLL 432 (1074)
Q Consensus 421 l~~~v~~li~~l 432 (1074)
+.++...+.+.+
T Consensus 47 Lkien~~l~~kI 58 (177)
T PF13870_consen 47 LKIENQQLNEKI 58 (177)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 124
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=36.94 E-value=99 Score=34.34 Aligned_cols=79 Identities=11% Similarity=0.192 Sum_probs=60.6
Q ss_pred HHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCC--ChhhHHHHHHHH
Q psy8075 145 LRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTE--NIKTKIAVLEIL 222 (1074)
Q Consensus 145 ~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~--~~~tr~~v~elL 222 (1074)
.-|....++.+|+++|... ....++..||.+|=++|=...--...+.+-+++..|+.-+.+. .-.+|.-++|.|
T Consensus 127 ~lF~r~~~m~lll~LL~~~----~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL 202 (257)
T PF08045_consen 127 KLFHREQNMELLLDLLSPS----NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFL 202 (257)
T ss_pred HHHhhhhhHHHHHHHhccC----CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHH
Confidence 3466778999999999322 2344677788877777666666667889999999999988766 467888899999
Q ss_pred HHHhc
Q psy8075 223 GAVCL 227 (1074)
Q Consensus 223 aavc~ 227 (1074)
.+++.
T Consensus 203 ~fyl~ 207 (257)
T PF08045_consen 203 YFYLM 207 (257)
T ss_pred HHHHc
Confidence 99987
No 125
>PF05536 Neurochondrin: Neurochondrin
Probab=36.67 E-value=1.4e+02 Score=37.12 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHHhcc
Q psy8075 171 SLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVCLI 228 (1074)
Q Consensus 171 ~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaavc~~ 228 (1074)
..--+|+.||-+|..++.|...++++ +.|..|+..+.+ +...+-.++.+|..+|..
T Consensus 114 ~~v~dalqcL~~Ias~~~G~~aLl~~-g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 114 ETVDDALQCLLAIASSPEGAKALLES-GAVPALCEIIPN-QSFQMEIALNLLLNLLSR 169 (543)
T ss_pred hHHHHHHHHHHHHHcCcHhHHHHHhc-CCHHHHHHHHHh-CcchHHHHHHHHHHHHHh
Confidence 34568999999999999999999886 677788877766 667788888888887774
No 126
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=36.46 E-value=2.9e+02 Score=24.07 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8075 444 KADELEMENVDLSNRL 459 (1074)
Q Consensus 444 ~~eel~~e~~eL~~kl 459 (1074)
..++++.++..|..+.
T Consensus 15 ~~~~L~~EN~~Lr~q~ 30 (65)
T TIGR02449 15 YLERLKSENRLLRAQE 30 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 127
>KOG1785|consensus
Probab=36.19 E-value=77 Score=36.58 Aligned_cols=12 Identities=0% Similarity=-0.028 Sum_probs=7.4
Q ss_pred hhhHHHhhcCcc
Q psy8075 187 STGRSHVLGYPG 198 (1074)
Q Consensus 187 ~~G~~~vl~~~~ 198 (1074)
+.|.+.++....
T Consensus 125 k~~~e~my~e~S 136 (563)
T KOG1785|consen 125 KESAERMYEEQS 136 (563)
T ss_pred HHhHHHHHhhcc
Confidence 567777765543
No 128
>KOG4673|consensus
Probab=36.18 E-value=4.1e+02 Score=33.26 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q psy8075 928 RLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEAKL 978 (1074)
Q Consensus 928 ~~~~L~~~~~~~~~~~~~l~~yfGEd~~~~~~~eFF~~~~~F~~~f~~a~~ 978 (1074)
.+..++..+..+...|..++..|||..- ..+++=-.+.+....|+.-.-
T Consensus 905 ~~p~~~~~ledL~qRy~a~LqmyGEk~E--e~EELrlDl~dlK~mYk~QId 953 (961)
T KOG4673|consen 905 RVPGIKAELEDLRQRYAAALQMYGEKDE--ELEELRLDLVDLKEMYKEQID 953 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHhhHHHHHHHHHHHHH
Confidence 3445667778888889999999999642 456766677777677765443
No 129
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.14 E-value=2.9e+02 Score=34.15 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=10.5
Q ss_pred CchHHHHHHHHHHHhHH
Q psy8075 319 ENETLDRHLDFFEMLRH 335 (1074)
Q Consensus 319 ~~~~L~~qi~~fe~~~~ 335 (1074)
+-+.|.--++.|...+.
T Consensus 343 ~RDALAAA~kAY~~yk~ 359 (652)
T COG2433 343 ERDALAAAYKAYLAYKP 359 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666777766544
No 130
>KOG0119|consensus
Probab=35.09 E-value=1.4e+02 Score=35.64 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhc
Q psy8075 271 SIKTALMSFLNAVLS 285 (1074)
Q Consensus 271 ~~~~a~m~lIN~lv~ 285 (1074)
.++.||=..=|.|..
T Consensus 216 ki~~Ai~vienli~~ 230 (554)
T KOG0119|consen 216 KIKKAIAVIENLIQS 230 (554)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455666555555554
No 131
>KOG4001|consensus
Probab=34.63 E-value=5.7e+02 Score=27.15 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 440 AAKKKADELEMENVDLSNRLAKKEQEL 466 (1074)
Q Consensus 440 ~~~~~~eel~~e~~eL~~kl~~~e~el 466 (1074)
.+..+|..++-+..+|..++++++..+
T Consensus 189 ~~~~~~k~le~~k~~Le~~ia~~k~K~ 215 (259)
T KOG4001|consen 189 RATTEWKVLEDKKKELELKIAQLKKKL 215 (259)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344555556555556655555544443
No 132
>KOG2264|consensus
Probab=33.97 E-value=2.8e+02 Score=33.79 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=11.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhh
Q psy8075 487 LEKETAGHLEAKQKVAELEDRISELK 512 (1074)
Q Consensus 487 l~~~~~~~~~~~~~~~~l~~~l~~l~ 512 (1074)
+.++..++.+++..+.+.+.+.+++.
T Consensus 123 i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 123 IPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 133
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=33.82 E-value=14 Score=37.93 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHhhccCCCCChHHHHHHHHh
Q psy8075 714 QLPLDMLEQLLKFTPNTEEAALLEEHSTETLARADRFLYEIS 755 (1074)
Q Consensus 714 ~L~~e~l~~Llk~lPt~eE~~~l~~~~~~~L~~aeqF~~~l~ 755 (1074)
.|+...+..|..+ .++|++ ..+..|++.-..|+
T Consensus 85 ~Ls~~v~~~L~~L------~~aL~~---~d~~~A~~Ih~~L~ 117 (157)
T PF07304_consen 85 KLSKPVVDKLHQL------AQALQA---RDYDAADEIHVDLM 117 (157)
T ss_dssp -S-HHHHHHHHHH------HHHHHH---T-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH------HHHHHc---CCHHHHHHHHHHHH
Confidence 3666666666444 223322 33556777666554
No 134
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=33.82 E-value=4e+02 Score=35.42 Aligned_cols=131 Identities=20% Similarity=0.259 Sum_probs=82.9
Q ss_pred cCcHHHHHHHHHhcccccC-----CcchhHHHHHHHHHHhcChhhHHHh----------hcCccHHHHHH----HhhcCC
Q psy8075 150 CEGLLTLLEYLKNLDHYSG-----QTSLHSSIIGCIKALMNNSTGRSHV----------LGYPGAIDIIA----QSLSTE 210 (1074)
Q Consensus 150 ~~Gl~~L~~~L~~~~~~~~-----~~~~~~~~l~ClkalmN~~~G~~~v----------l~~~~~i~~la----~sL~s~ 210 (1074)
..|+..|-.+|+.+..... ....-.++|.=+..++.+..|.+.. +.+++.|..|. ++|.++
T Consensus 519 ysgw~lLG~~Le~~~~~~~~~d~~~~~~v~~ii~Ll~~l~~~~~~~~~~~~iL~~~S~~l~~~DIisvI~~ile~~L~~~ 598 (931)
T PF10487_consen 519 YSGWALLGRWLENLLKSYSELDSLQDERVAEIIDLLASLLSSDNSIEDSKEILEEASAYLDHSDIISVIFDILERSLQSR 598 (931)
T ss_pred chHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHccCcchhHHHHHHHHHhhccccCcHHHHHHHHHHHHcccC
Confidence 5788888888876542211 1122345666677777555554432 23344444444 467788
Q ss_pred ChhhHHHHHHHHHHHhccCCchhHHHHHHhhHHHH--cccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcC
Q psy8075 211 NIKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQRF--CNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSY 286 (1074)
Q Consensus 211 ~~~tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~~--~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~ 286 (1074)
++..-..++..|+|++-+- -.+||..|.+-.-. .+..++...++..++...|.| ++..+|+.|.+++|+.
T Consensus 599 ~v~ll~scl~fL~aL~p~~--p~rVW~~L~rS~LL~~~g~~G~~s~ilgs~E~~~G~Y----~ftls~lkL~~~Lv~~ 670 (931)
T PF10487_consen 599 NVELLTSCLRFLTALLPIF--PGRVWSYLSRSSLLGSDGKGGLASVILGSIEMVSGRY----DFTLSLLKLFSALVDD 670 (931)
T ss_pred ChHHHHHHHHHHHHHhccC--hHHHHHHHhhCcCcccCCccchHHHhhhhhhccCCcc----hHHHHHHHHHHHHHHH
Confidence 8888888899998876531 25777777654322 233456667776777766644 6789999999999974
No 135
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=33.48 E-value=1.4e+02 Score=35.16 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=73.8
Q ss_pred hHHHHHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHH
Q psy8075 124 SRTRILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDII 203 (1074)
Q Consensus 124 ~~~~~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~l 203 (1074)
..+-.++=+|-.+.+. ..++.|...+.--.+.--|.+ +.....--...++.+|++|....|.+.+ ....++.|
T Consensus 41 vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~---~~~~~~ER~QALkliR~~l~~~~~~~~~--~~~vvral 113 (371)
T PF14664_consen 41 VRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDR---DNKNDVEREQALKLIRAFLEIKKGPKEI--PRGVVRAL 113 (371)
T ss_pred HHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcc---cCCChHHHHHHHHHHHHHHHhcCCcccC--CHHHHHHH
Confidence 4466677777777666 667777765544443334443 2111111135889999999998787665 34457788
Q ss_pred HHhhcCCChhhHHHHHHHHHHHhcc-------CCchhHHHHHHh
Q psy8075 204 AQSLSTENIKTKIAVLEILGAVCLI-------PGGHKKVLDAMS 240 (1074)
Q Consensus 204 a~sL~s~~~~tr~~v~elLaavc~~-------~~Gh~~VL~Al~ 240 (1074)
+....++.-+.|..++|.|+=+|+. .||...+++++-
T Consensus 114 vaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 114 VAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALI 157 (371)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHH
Confidence 8878888899999999999988875 267777766654
No 136
>KOG0972|consensus
Probab=32.83 E-value=7.6e+02 Score=27.80 Aligned_cols=20 Identities=10% Similarity=0.208 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhcChhhHHH
Q psy8075 173 HSSIIGCIKALMNNSTGRSH 192 (1074)
Q Consensus 173 ~~~~l~ClkalmN~~~G~~~ 192 (1074)
++..+..|+|.+-.+.|-+.
T Consensus 57 qf~mftsLaawLikk~G~e~ 76 (384)
T KOG0972|consen 57 QFYMFTSLAAWLIKKSGQEG 76 (384)
T ss_pred HHHHHHHHHHHHHHhcCCcc
Confidence 44556667777777777655
No 137
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=32.48 E-value=4.1e+02 Score=26.77 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 438 IVAAKKKADELEMENVDLSNRLAKKEQELDQK 469 (1074)
Q Consensus 438 ~~~~~~~~eel~~e~~eL~~kl~~~e~el~~k 469 (1074)
++.+..+....+.++..|+.++..++.++...
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555444444433
No 138
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.23 E-value=3.1e+02 Score=23.16 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8075 879 MKELENDMTQLRNNLKEVSREIEFQ 903 (1074)
Q Consensus 879 ~~~l~~d~~~l~~~l~~~~~el~~~ 903 (1074)
++.|.++|+.|...+..+..++...
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888777543
No 139
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.92 E-value=4.1e+02 Score=30.58 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=5.7
Q ss_pred HHHhhhcCcHH
Q psy8075 144 VLRFIECEGLL 154 (1074)
Q Consensus 144 v~~Fi~~~Gl~ 154 (1074)
+++|++.=|+.
T Consensus 16 L~~FL~~~~I~ 26 (325)
T PF08317_consen 16 LQDFLNMTGIR 26 (325)
T ss_pred HHHHHHHhCce
Confidence 55666544443
No 140
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=31.54 E-value=1.2e+03 Score=29.88 Aligned_cols=150 Identities=13% Similarity=0.194 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcC-CChhhHHHHHHHHHHHhccC---------Cchh--------
Q psy8075 172 LHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLST-ENIKTKIAVLEILGAVCLIP---------GGHK-------- 233 (1074)
Q Consensus 172 ~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s-~~~~tr~~v~elLaavc~~~---------~Gh~-------- 233 (1074)
.+..|++.|..|--...+. .++...++|..|...|.+ +..++...++-++.-+|..+ +|-.
T Consensus 386 ~~~val~iLy~LS~dd~~r-~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~ 464 (708)
T PF05804_consen 386 FREVALKILYNLSMDDEAR-SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK 464 (708)
T ss_pred hHHHHHHHHHHhccCHhhH-HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh
Confidence 4556788888887776655 466777899888887654 44555444433333333322 2322
Q ss_pred ----HHHHHHhhHHHHc-ccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCc
Q psy8075 234 ----KVLDAMSHYQRFC-NERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGI 308 (1074)
Q Consensus 234 ----~VL~Al~~~~~~~-~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~~~~~~dl~~R~~lR~Ef~~~GL 308 (1074)
.++.-+.+.+.+- ..+..|..+|..|-..... .++.++.+-||..++-+-. .++++..-+ ...+|
T Consensus 465 ~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~-~~~ee~~vE~LGiLaNL~~-----~~ld~~~ll----~~~~l 534 (708)
T PF05804_consen 465 TRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS-GDSEEFVVECLGILANLTI-----PDLDWAQLL----QEYNL 534 (708)
T ss_pred cccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHhccc-----CCcCHHHHH----HhCCH
Confidence 2233334444443 3356688888765432111 2456788999988887764 233444333 34677
Q ss_pred HHHHHHHhc--cCchHHHHHHHHHHH
Q psy8075 309 QPIIDKLRT--HENETLDRHLDFFEM 332 (1074)
Q Consensus 309 ~~~l~~Lr~--~~~~~L~~qi~~fe~ 332 (1074)
.+.|.++-. ...+++.-++=+|-.
T Consensus 535 lp~L~~~L~~g~~~dDl~LE~Vi~~g 560 (708)
T PF05804_consen 535 LPWLKDLLKPGASEDDLLLEVVILLG 560 (708)
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHH
Confidence 776665432 223445444445544
No 141
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.50 E-value=5.4e+02 Score=27.19 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=5.4
Q ss_pred HHHHHHHHHh
Q psy8075 398 LLDRLAQQLT 407 (1074)
Q Consensus 398 lld~~v~qiv 407 (1074)
.+-.+++.+|
T Consensus 31 ~VKdvlq~Lv 40 (188)
T PF03962_consen 31 SVKDVLQSLV 40 (188)
T ss_pred hHHHHHHHHh
Confidence 4555555554
No 142
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=31.41 E-value=83 Score=35.32 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=13.6
Q ss_pred hHhhHHhhhHhHHHHHHHHHHHhhcH
Q psy8075 773 FHFWISDIEPKIKSVMEASREVTRSR 798 (1074)
Q Consensus 773 f~~~~~~l~~~l~~v~~A~~~l~~S~ 798 (1074)
|+..+-.-...+..|..-.++++.|-
T Consensus 284 FerQVI~EL~~LQqIEr~AkeMRasA 309 (407)
T PF04625_consen 284 FERQVIAELKMLQQIERMAKEMRASA 309 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444333344566666666666553
No 143
>PHA03211 serine/threonine kinase US3; Provisional
Probab=31.39 E-value=53 Score=39.79 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy8075 1028 DDLISA 1033 (1074)
Q Consensus 1028 D~Ll~~ 1033 (1074)
.+||..
T Consensus 432 ~dli~~ 437 (461)
T PHA03211 432 EYLVCR 437 (461)
T ss_pred HHHHHH
Confidence 334433
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.34 E-value=5.5e+02 Score=28.23 Aligned_cols=9 Identities=11% Similarity=0.050 Sum_probs=4.0
Q ss_pred HHHHHHhhh
Q psy8075 642 EVVDKLFCA 650 (1074)
Q Consensus 642 ~~lE~lF~~ 650 (1074)
.+|.+.|..
T Consensus 223 ~~i~~ai~i 231 (251)
T PF11932_consen 223 REIRKAIRI 231 (251)
T ss_pred HHHHHHHHH
Confidence 344444443
No 145
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=31.23 E-value=1.3e+02 Score=33.87 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=5.9
Q ss_pred CcchHHHHHH
Q psy8075 843 GVTLLHYLVE 852 (1074)
Q Consensus 843 k~TLLhylv~ 852 (1074)
+.|..|-|.+
T Consensus 325 srTPvHKITR 334 (407)
T PF04625_consen 325 SRTPVHKITR 334 (407)
T ss_pred cCCchhhhhH
Confidence 3566776653
No 146
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.07 E-value=3.2e+02 Score=34.71 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy8075 441 AKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKD 485 (1074)
Q Consensus 441 ~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~ 485 (1074)
+.+++++++++..++..+...++.++.....+.+.+...+..+++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444444444444444444433
No 147
>KOG3564|consensus
Probab=30.79 E-value=4.8e+02 Score=31.39 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy8075 445 ADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRI 508 (1074)
Q Consensus 445 ~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l 508 (1074)
+++.+++-..+..++.+.++.+.....+...+.-.+...+.++..++.+.++++.....++.++
T Consensus 37 fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i 100 (604)
T KOG3564|consen 37 FEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQI 100 (604)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333333333333344444444333333333333333333333344443333333333333333
No 148
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=30.49 E-value=2.8e+02 Score=31.60 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=66.9
Q ss_pred HHHHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhccc--ccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHH
Q psy8075 126 TRILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDH--YSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDII 203 (1074)
Q Consensus 126 ~~~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~~--~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~l 203 (1074)
.-++..|...||.. ..-.-|.+.+|+..|+++|..... ....-+++|+.+.|+=-|-=+..+...+..+. .|..+
T Consensus 168 ~~av~~L~~LL~~~--~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L 244 (312)
T PF03224_consen 168 YIAVQCLQNLLRSK--EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLL 244 (312)
T ss_dssp HHHHHHHHHHHTSH--HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhCcc--hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHH
Confidence 45677778888888 667778889999999999963322 23344578999999999988888888887777 77777
Q ss_pred HHhhc-CCChhhHHHHHHHHHHHhc
Q psy8075 204 AQSLS-TENIKTKIAVLEILGAVCL 227 (1074)
Q Consensus 204 a~sL~-s~~~~tr~~v~elLaavc~ 227 (1074)
+..+- +..-++-..++-+|--++-
T Consensus 245 ~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 245 ADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcccchHHHHHHHHHHHHHh
Confidence 76553 3345555555555544443
No 149
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=30.30 E-value=17 Score=40.54 Aligned_cols=6 Identities=0% Similarity=0.412 Sum_probs=3.4
Q ss_pred HHHHHH
Q psy8075 327 LDFFEM 332 (1074)
Q Consensus 327 i~~fe~ 332 (1074)
|+.|+.
T Consensus 15 IkaYdk 20 (264)
T PF06003_consen 15 IKAYDK 20 (264)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 556654
No 150
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=30.12 E-value=81 Score=34.93 Aligned_cols=6 Identities=33% Similarity=0.761 Sum_probs=2.8
Q ss_pred CCCccc
Q psy8075 623 NGTIWT 628 (1074)
Q Consensus 623 ~~TiW~ 628 (1074)
.|+||.
T Consensus 205 aGtf~r 210 (274)
T PLN02983 205 AGTFYR 210 (274)
T ss_pred CeEEEe
Confidence 345554
No 151
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=30.01 E-value=17 Score=40.48 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=1.5
Q ss_pred HHHHHHHH
Q psy8075 395 HWLLLDRL 402 (1074)
Q Consensus 395 ~~~lld~~ 402 (1074)
.|++=|.|
T Consensus 68 ~WkvGd~C 75 (264)
T PF06003_consen 68 KWKVGDKC 75 (264)
T ss_dssp ---TT-EE
T ss_pred CCCCCCEE
Confidence 34443333
No 152
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=29.83 E-value=1.4e+03 Score=29.99 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHhhhhccCchhhHHHhhhcC--cHHHHHHHHH
Q psy8075 127 RILDSLRTALRTQPHSFVLRFIECE--GLLTLLEYLK 161 (1074)
Q Consensus 127 ~~l~~L~v~Lrt~~~~Wv~~Fi~~~--Gl~~L~~~L~ 161 (1074)
.++..|+..++++.+.=.-=|..-. |=..+..+|.
T Consensus 22 ~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 22 HVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3556677777777554222244333 4455555554
No 153
>KOG0804|consensus
Probab=29.55 E-value=1.1e+03 Score=28.44 Aligned_cols=17 Identities=18% Similarity=0.519 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8075 495 LEAKQKVAELEDRISEL 511 (1074)
Q Consensus 495 ~~~~~~~~~l~~~l~~l 511 (1074)
.....++.+|++|+..+
T Consensus 431 ~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 34456677888887754
No 154
>KOG0161|consensus
Probab=29.46 E-value=1.3e+03 Score=33.25 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=46.0
Q ss_pred HHHHHhhHHHHcccccchHHHHH------HhhhccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCc
Q psy8075 235 VLDAMSHYQRFCNERSRFQGIVN------DLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGI 308 (1074)
Q Consensus 235 VL~Al~~~~~~~~e~~RF~~lv~------~l~~~~~~~~~~~~~~~a~m~lIN~lv~~~~~~~dl~~R~~lR~Ef~~~GL 308 (1074)
||+++..++.-+-.+-+|..+.. ...... .+.+ -+.+|...++.|... .++ +|+-.=.-|.++|.
T Consensus 690 VLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~-~~~d---~k~~~~~~~~~l~~d----~~l-yriG~tKvFfkaGv 760 (1930)
T KOG0161|consen 690 VLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKK-GFSD---GKKACEKILEELLLD----KNL-YRIGHTKVFFKAGV 760 (1930)
T ss_pred cHHHHHHHHhhCccccchHHHHHhHHhhhhhhccc-cccc---cchhHHHHHHHHhcc----cce-EeecceeeeehHHH
Confidence 67777777655444444444443 222222 2222 267888899999863 344 78777778888888
Q ss_pred HHHHHHHhc
Q psy8075 309 QPIIDKLRT 317 (1074)
Q Consensus 309 ~~~l~~Lr~ 317 (1074)
.--|+.+|.
T Consensus 761 la~LEe~Rd 769 (1930)
T KOG0161|consen 761 LAHLEEMRD 769 (1930)
T ss_pred HHHHHHHHH
Confidence 777777765
No 155
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=29.24 E-value=2.4e+02 Score=26.82 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCC
Q psy8075 880 KELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRLSEI-EDLFQDMKTRFDRAVRLFGEDNS 955 (1074)
Q Consensus 880 ~~l~~d~~~l~~~l~~~~~el~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L-~~~~~~~~~~~~~l~~yfGEd~~ 955 (1074)
+++.+|++.|-..++.+=+ ...+...+.-+........-+.+++.++... .......+..-..+=.|-+|+|=
T Consensus 11 ~~l~~el~~L~d~lEevL~---ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PW 84 (104)
T COG4575 11 DQLLAELQELLDTLEEVLK---SSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPW 84 (104)
T ss_pred HHHHHHHHHHHHHHHHHHH---hcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc
Confidence 7777888887776665532 2211111223345566677777777777777 44456677777777788899884
No 156
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.77 E-value=6.6e+02 Score=25.88 Aligned_cols=8 Identities=38% Similarity=0.492 Sum_probs=5.4
Q ss_pred HHHHHHHH
Q psy8075 325 RHLDFFEM 332 (1074)
Q Consensus 325 ~qi~~fe~ 332 (1074)
+|+..||+
T Consensus 28 TQL~AFeE 35 (161)
T TIGR02894 28 TQLSAFEE 35 (161)
T ss_pred HHHHHHHH
Confidence 67777765
No 157
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.63 E-value=6.2e+02 Score=29.16 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=45.1
Q ss_pred HHHHHHHHhcChhhHHHhh-cCccHHHHHHHhhcCCC---hhhHHHHHHHHHHHhccCCchhHHHHHHh
Q psy8075 176 IIGCIKALMNNSTGRSHVL-GYPGAIDIIAQSLSTEN---IKTKIAVLEILGAVCLIPGGHKKVLDAMS 240 (1074)
Q Consensus 176 ~l~ClkalmN~~~G~~~vl-~~~~~i~~la~sL~s~~---~~tr~~v~elLaavc~~~~Gh~~VL~Al~ 240 (1074)
.|-|+-.+..++.....++ .+|+.+..|+..|..+. ..+|..++..|.|++...-.+.-|+.|+.
T Consensus 242 Ai~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg 310 (329)
T PF06012_consen 242 AIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALG 310 (329)
T ss_pred HHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhc
Confidence 3444445556666777777 67778999999887653 67888899988888885444445666664
No 158
>KOG3771|consensus
Probab=28.40 E-value=1.1e+03 Score=28.37 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhHH
Q psy8075 458 RLAKKEQELDQKTQEKE 474 (1074)
Q Consensus 458 kl~~~e~el~~k~~e~e 474 (1074)
++.+.|.|++..++..|
T Consensus 158 k~~KAeeEl~~Aq~~fE 174 (460)
T KOG3771|consen 158 KLAKAEEELEKAQQVFE 174 (460)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 159
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.36 E-value=7.8e+02 Score=27.31 Aligned_cols=12 Identities=17% Similarity=-0.006 Sum_probs=6.1
Q ss_pred hhhHHHHhccCC
Q psy8075 685 AQNCTILLSKLK 696 (1074)
Q Consensus 685 aqNi~I~L~~lk 696 (1074)
.+||.-++...+
T Consensus 265 n~nI~~L~~~q~ 276 (302)
T PF10186_consen 265 NKNIAQLCFSQG 276 (302)
T ss_pred HHHHHHHHHHcC
Confidence 455555555333
No 160
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.23 E-value=1.2e+03 Score=28.81 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=15.4
Q ss_pred cCCCCCCc-----cccccccCCCCCccccCCCCCCCCC
Q psy8075 13 LQDDEPPE-----ITYCMVDNAGTPALVTFTPTLPIPP 45 (1074)
Q Consensus 13 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~P~ 45 (1074)
|.++..|. ...|-+++.|.-.-...+|.+.-|.
T Consensus 77 F~ayyLPk~~~e~YqfcYv~~~g~V~G~S~pFqf~~~~ 114 (546)
T PF07888_consen 77 FQAYYLPKDDDEFYQFCYVDQKGEVRGASTPFQFRAPK 114 (546)
T ss_pred ECcccCCCCCCCeEEEEEECCCccEEEecCCcccCCCC
Confidence 56666664 2334455433222334455555443
No 161
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=28.22 E-value=9.4e+02 Score=27.48 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCCChhh-HHHHHHHhccCCccCCCchhHHHHHHHHHHHHhhhcccCCCccchhhhhhHHHHHHHHhhHHH
Q psy8075 359 FNILRRKLGHTAAYPH-FLSLLHHCILLPLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEE 437 (1074)
Q Consensus 359 ~~~l~~~~~~t~a~~~-~lSiLQhLLli~~~~~~~~~~~~lld~~v~qivl~~~~g~d~d~~~l~~~v~~li~~l~~~~e 437 (1074)
++.|..|++...-+.. |-+=..||-.-...+ --+..+|+..||.|+.-- ...+..|-+-|.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~--EekEqqLv~dcv~QL~~A------------n~qia~LseELa---- 223 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTY--EEKEQQLVLDCVKQLSEA------------NQQIASLSEELA---- 223 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc--cHHHHHHHHHHHHHhhhc------------chhHHHHHHHHH----
Confidence 5666777666544332 222222222111112 234566788888886321 012222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy8075 438 IVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIK 484 (1074)
Q Consensus 438 ~~~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~ 484 (1074)
.-.+.....++++..|..++..++..+.+...|.+++.+.+...+
T Consensus 224 --~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 224 --RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 112223334455566666666666666666666666666655443
No 162
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.06 E-value=6e+02 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy8075 480 LSRIKDRLEKETAGHLEAKQKVAELEDRISE 510 (1074)
Q Consensus 480 l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 510 (1074)
+..++..+.....+.......+..|+..+.+
T Consensus 91 V~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 91 VTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444445544443
No 163
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=28.02 E-value=2e+02 Score=31.88 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhhc
Q psy8075 500 KVAELEDRISELKHR 514 (1074)
Q Consensus 500 ~~~~l~~~l~~l~~~ 514 (1074)
-|+.+..+|++|..+
T Consensus 56 AL~~a~~ri~eLe~q 70 (247)
T PF09849_consen 56 ALKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 164
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=27.99 E-value=1.8e+02 Score=35.10 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=58.3
Q ss_pred HHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhcc-----cccCCcchhHHHHHHHH-HHhcChhhHHHhhcCccHHH
Q psy8075 128 ILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLD-----HYSGQTSLHSSIIGCIK-ALMNNSTGRSHVLGYPGAID 201 (1074)
Q Consensus 128 ~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~-----~~~~~~~~~~~~l~Clk-almN~~~G~~~vl~~~~~i~ 201 (1074)
+|..||+..|.. .=...+...+|+..|+.+=.--. ....+...-.+-+|||- +|.|+..+. ..+.+..+..
T Consensus 1 ~L~~LRiLsRd~--~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR-~~~~~~~~~~ 77 (446)
T PF10165_consen 1 CLETLRILSRDP--TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSAR-QIFVDLGLAE 77 (446)
T ss_pred CHHHHHHHccCc--ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHH-HHHHHcCcHH
Confidence 467788888876 33444555566666665421100 12223445678899987 455555555 5556667777
Q ss_pred HHHHhhcCC-----ChhhHHHHHHHHHHHhc
Q psy8075 202 IIAQSLSTE-----NIKTKIAVLEILGAVCL 227 (1074)
Q Consensus 202 ~la~sL~s~-----~~~tr~~v~elLaavc~ 227 (1074)
.++..|... +.-.....+-||.-++.
T Consensus 78 ~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa 108 (446)
T PF10165_consen 78 KLCERLKNYSDSSQPSDVEFLDSRLLFLLTA 108 (446)
T ss_pred HHHHHHHcccccCCChhHHHHHHHHHHHHhc
Confidence 777777655 56667777777655544
No 165
>KOG0946|consensus
Probab=27.97 E-value=1.3e+03 Score=29.97 Aligned_cols=22 Identities=18% Similarity=0.689 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHH
Q psy8075 356 TSMFNILRRKLGHTAAYPHFLSLLHH 381 (1074)
Q Consensus 356 ~~v~~~l~~~~~~t~a~~~~lSiLQh 381 (1074)
.+++.+|..+|.. +.|+|-|+-
T Consensus 569 ~~~~~lItkrvGk----e~f~srL~~ 590 (970)
T KOG0946|consen 569 SDVYQLITKRVGK----ENFISRLQR 590 (970)
T ss_pred HHHHHHHHHHHhH----HHHHHHHHH
Confidence 6889888888754 367787774
No 166
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=27.77 E-value=1.5e+03 Score=29.63 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=35.0
Q ss_pred hcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhc
Q psy8075 149 ECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLG 195 (1074)
Q Consensus 149 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~ 195 (1074)
+++||++|+..|..+..-.+...+...+++=|+.+++.+.+++.++.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~ 161 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLE 161 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 57999999999999874333333334567777888888888888887
No 167
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=27.40 E-value=96 Score=22.99 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=23.5
Q ss_pred HHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q psy8075 145 LRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKAL 183 (1074)
Q Consensus 145 ~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~Clkal 183 (1074)
..+++.+|+..|+.+|. ..+..+...++.+|+.|
T Consensus 6 ~~i~~~g~i~~L~~ll~-----~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 6 QAVVDAGGLPALVELLK-----SEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHHHH
Confidence 35778899999999987 22344566666666654
No 168
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=27.28 E-value=6.4e+02 Score=28.83 Aligned_cols=103 Identities=15% Similarity=0.265 Sum_probs=64.0
Q ss_pred cCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhh--HHHhhcCccHHHHHHHhhcCCC---hhhHHHHHHHHHH
Q psy8075 150 CEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTG--RSHVLGYPGAIDIIAQSLSTEN---IKTKIAVLEILGA 224 (1074)
Q Consensus 150 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G--~~~vl~~~~~i~~la~sL~s~~---~~tr~~v~elLaa 224 (1074)
.++-..|..++..+..+..++....-+.+|+-|+|-...= .+..+.....+..|...+.++. ..+.-..++||+-
T Consensus 91 ~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGE 170 (303)
T PF12463_consen 91 KEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGE 170 (303)
T ss_pred cccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 3455666677777777777777777888999999876543 3445566666777776666554 2466677788876
Q ss_pred HhccCCchhHHHHHHhhHHHHcccccchHHHHHHh
Q psy8075 225 VCLIPGGHKKVLDAMSHYQRFCNERSRFQGIVNDL 259 (1074)
Q Consensus 225 vc~~~~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l 259 (1074)
++-.. ..++..+...+... .|+.+++.+
T Consensus 171 LiK~n------~~~f~~l~~~l~~~-kF~~fl~~v 198 (303)
T PF12463_consen 171 LIKFN------RDAFQRLNKYLNND-KFQRFLEVV 198 (303)
T ss_pred HHCCC------HHHHHHHHHHhcch-HHHHHHHHH
Confidence 66542 23444443333333 566666554
No 169
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=27.25 E-value=4.7e+02 Score=23.66 Aligned_cols=22 Identities=9% Similarity=0.388 Sum_probs=11.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q psy8075 464 QELDQKTQEKEDLDESLSRIKD 485 (1074)
Q Consensus 464 ~el~~k~~e~e~l~~~l~~l~~ 485 (1074)
..+.+..+|++.+++++..|..
T Consensus 32 ~ki~~Qi~Em~~ir~~v~eLE~ 53 (79)
T PF08581_consen 32 HKINSQIQEMQQIRQKVYELEQ 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666555543
No 170
>KOG4307|consensus
Probab=27.00 E-value=1.7e+02 Score=36.49 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=4.8
Q ss_pred HHHHHHhcCC
Q psy8075 719 MLEQLLKFTP 728 (1074)
Q Consensus 719 ~l~~Llk~lP 728 (1074)
++..+....|
T Consensus 376 ~~~R~~q~~P 385 (944)
T KOG4307|consen 376 DVNRPFQTGP 385 (944)
T ss_pred hhhcceeecC
Confidence 4444555554
No 171
>KOG4500|consensus
Probab=27.00 E-value=3.9e+02 Score=31.83 Aligned_cols=65 Identities=25% Similarity=0.502 Sum_probs=41.6
Q ss_pred HHHHHHhcChhhHHHhhcC---ccHHHHHHHhhcCCChhhHHHHHHHHHHHhccC----------CchhHHHHHHhhH
Q psy8075 178 GCIKALMNNSTGRSHVLGY---PGAIDIIAQSLSTENIKTKIAVLEILGAVCLIP----------GGHKKVLDAMSHY 242 (1074)
Q Consensus 178 ~ClkalmN~~~G~~~vl~~---~~~i~~la~sL~s~~~~tr~~v~elLaavc~~~----------~Gh~~VL~Al~~~ 242 (1074)
+|+.-+--+....+..... .+++..+.+...|+.-.+-.+.+--|+-+|+-. ||...|++-++.|
T Consensus 64 sC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~ 141 (604)
T KOG4500|consen 64 SCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPY 141 (604)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccc
Confidence 4555554555444444433 345666777777777778888888999999863 4555666655554
No 172
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=26.58 E-value=7.8e+02 Score=25.99 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 441 AKKKADELEMENVDLSNRLAKKEQELD 467 (1074)
Q Consensus 441 ~~~~~eel~~e~~eL~~kl~~~e~el~ 467 (1074)
...+..+++.+..+|..++..++..++
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444333
No 173
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.43 E-value=1.3e+02 Score=29.35 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=35.6
Q ss_pred cchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHH
Q psy8075 170 TSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEIL 222 (1074)
Q Consensus 170 ~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elL 222 (1074)
..+...+++|+++.+. ......+..++ .+..+...|.++.. +..++|.|
T Consensus 100 ~~~~~~~L~~l~s~i~-~~~~~~i~~~~-~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS-WIPIELIINSN-LLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTT-TS-HHHHHSSS-HHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hCCHHHhccHH-HHHHHHHHcCCHHH--HHHHHHhC
Confidence 3345679999999999 66788888755 88888888866554 66666644
No 174
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=26.39 E-value=5.9e+02 Score=25.47 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHH
Q psy8075 930 SEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEAKLDNEN 982 (1074)
Q Consensus 930 ~~L~~~~~~~~~~~~~l~~yfGEd~~~~~~~eFF~~~~~F~~~f~~a~~en~~ 982 (1074)
..|+....++++.-..++.=|.+.. ..+..|+..|...++....
T Consensus 99 ~~L~~~~~e~eeeSe~lae~fl~g~---------~d~~~Fl~~f~~~R~~yH~ 142 (150)
T PF07200_consen 99 ARLQAAASEAEEESEELAEEFLDGE---------IDVDDFLKQFKEKRKLYHL 142 (150)
T ss_dssp HHHHHHHHHHHHHHHHHC-S-SSSH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665431 3578899999888875543
No 175
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=26.33 E-value=2.7e+02 Score=26.54 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy8075 891 NNLKEVS 897 (1074)
Q Consensus 891 ~~l~~~~ 897 (1074)
..|+.++
T Consensus 27 eqik~~q 33 (105)
T PF11214_consen 27 EQIKNNQ 33 (105)
T ss_pred HHHHHHh
Confidence 3344443
No 176
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=26.26 E-value=5.2e+02 Score=37.22 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=69.4
Q ss_pred HHHHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHH
Q psy8075 126 TRILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQ 205 (1074)
Q Consensus 126 ~~~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~ 205 (1074)
.+....|+..... +.+-.+..++.+|+..|+++|..- +..++...+.+|+.|-....--..++.+..+|..|+.
T Consensus 422 ~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~-----s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 422 EELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLS-----SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 3444444443333 334456777889999999999852 2345677788888886533333345557789999999
Q ss_pred hhcCCChhhHHHHHHHHHHHhccC
Q psy8075 206 SLSTENIKTKIAVLEILGAVCLIP 229 (1074)
Q Consensus 206 sL~s~~~~tr~~v~elLaavc~~~ 229 (1074)
.|.+++.+++..++-.|+-+|..+
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~ 519 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS 519 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc
Confidence 999999999999999998888643
No 177
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.21 E-value=6.8e+02 Score=31.17 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=7.1
Q ss_pred CCHHHHHHHhhh
Q psy8075 639 MELEVVDKLFCA 650 (1074)
Q Consensus 639 ld~~~lE~lF~~ 650 (1074)
.|.++|+.....
T Consensus 610 v~~eelr~~~e~ 621 (652)
T COG2433 610 VDSEELRRAIEE 621 (652)
T ss_pred ecHHHHHHHHHH
Confidence 456666666544
No 178
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.13 E-value=5.3e+02 Score=29.89 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8075 443 KKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESL 480 (1074)
Q Consensus 443 ~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l 480 (1074)
.++.+...+..+|+.+|...+.++.++.++.+.+.+.+
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566655556665555555554444
No 179
>KOG3753|consensus
Probab=26.12 E-value=2.8e+02 Score=35.60 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q psy8075 358 MFNILRRKL 366 (1074)
Q Consensus 358 v~~~l~~~~ 366 (1074)
||+.|...|
T Consensus 466 I~edlLqpv 474 (1114)
T KOG3753|consen 466 IFEDLLQPV 474 (1114)
T ss_pred HHHHHhhhh
Confidence 333333333
No 180
>KOG0971|consensus
Probab=25.77 E-value=1.6e+03 Score=29.40 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCcHHHHHHHhccCc
Q psy8075 296 RLHLRYEVIMLGIQPIIDKLRTHEN 320 (1074)
Q Consensus 296 R~~lR~Ef~~~GL~~~l~~Lr~~~~ 320 (1074)
--..|-|-...-|.+.+.+||+...
T Consensus 368 ~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 368 YQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3345667777788899999998764
No 181
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.70 E-value=4.8e+02 Score=27.62 Aligned_cols=54 Identities=15% Similarity=0.355 Sum_probs=37.7
Q ss_pred cccccCCCCCcchHHHHHHHHHHhhhhcc-chhhhhhhHHHhhcCCHHHHHHHHHH
Q psy8075 834 VDTKSSSSRGVTLLHYLVELAEKRFKEVL-KLEEDLCHVKEASKVSMKELENDMTQ 888 (1074)
Q Consensus 834 ~dtKs~~d~k~TLLhylv~~v~~~~p~ll-~f~~eL~~v~~Aakvs~~~l~~d~~~ 888 (1074)
.+.++..+++..+++||.++-+-+.+|+. +-.+++..++.|-.| |+.|..+...
T Consensus 47 ~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v-~~~I~~E~~~ 101 (200)
T cd00280 47 LKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMV-LESIEKEFSL 101 (200)
T ss_pred ccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHH-HHHHHHhcCC
Confidence 34444445677899999998888888864 233457888888655 7777777665
No 182
>KOG3546|consensus
Probab=25.49 E-value=2.4e+02 Score=34.68 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=12.9
Q ss_pred HHHHhccccCCC------CCCCccceeccc
Q psy8075 806 LVLALGNYMNKG------ARGNASGFRLTS 829 (1074)
Q Consensus 806 ~IL~iGNymN~g------~rg~A~GFkL~s 829 (1074)
.|-..|||.-+- ..|-|+.|.+.+
T Consensus 1111 girlagsycegwrtvssggtgfasaldlgs 1140 (1167)
T KOG3546|consen 1111 GIRLAGSYCEGWRTVSSGGTGFASALDLGS 1140 (1167)
T ss_pred chhhhhccccceeEecCCcccccccccccc
Confidence 455568887653 123455565443
No 183
>PRK10132 hypothetical protein; Provisional
Probab=25.45 E-value=2.2e+02 Score=27.30 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=31.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy8075 912 DRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNS 955 (1074)
Q Consensus 912 D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfGEd~~ 955 (1074)
+.....+...+..++..+...+.....++.....+-.|-.++|=
T Consensus 44 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw 87 (108)
T PRK10132 44 EAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPW 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcH
Confidence 34456677778888888877777666667777777778888873
No 184
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.33 E-value=7e+02 Score=25.01 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 439 VAAKKKADELEMENVDLSNRLAKK 462 (1074)
Q Consensus 439 ~~~~~~~eel~~e~~eL~~kl~~~ 462 (1074)
..++.++++++++....+.+...+
T Consensus 76 ~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 76 ERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555444444443333
No 185
>KOG3397|consensus
Probab=25.08 E-value=85 Score=32.37 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHh
Q psy8075 270 VSIKTALMSFLNAVL 284 (1074)
Q Consensus 270 ~~~~~a~m~lIN~lv 284 (1074)
.+++-+|+.|||+=-
T Consensus 22 PELlk~~~~LIN~eW 36 (225)
T KOG3397|consen 22 PELLKESMTLINSEW 36 (225)
T ss_pred HHHHHHHHHHHhccC
Confidence 567788888988755
No 186
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.82 E-value=5.3e+02 Score=31.17 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 438 IVAAKKKADELEMENVDLSNRLAK 461 (1074)
Q Consensus 438 ~~~~~~~~eel~~e~~eL~~kl~~ 461 (1074)
+++.+.++..+.+++..|.++.++
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~ 91 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENER 91 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666555544443
No 187
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=24.57 E-value=5.3e+02 Score=31.78 Aligned_cols=6 Identities=0% Similarity=0.440 Sum_probs=2.3
Q ss_pred HHHHHh
Q psy8075 643 VVDKLF 648 (1074)
Q Consensus 643 ~lE~lF 648 (1074)
.+|+++
T Consensus 277 riee~~ 282 (514)
T TIGR03319 277 RIEEMV 282 (514)
T ss_pred HHHHHH
Confidence 333333
No 188
>KOG0243|consensus
Probab=24.50 E-value=5.9e+02 Score=33.78 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=10.3
Q ss_pred HHHHHHhcCCCCCCCHHHH
Q psy8075 278 SFLNAVLSYGPGQHSLEFR 296 (1074)
Q Consensus 278 ~lIN~lv~~~~~~~dl~~R 296 (1074)
-.||+||+-+. -+-||
T Consensus 328 RVInALVe~s~---HIPYR 343 (1041)
T KOG0243|consen 328 RVINALVEHSG---HIPYR 343 (1041)
T ss_pred HHHHHHHccCC---CCCch
Confidence 47999997532 34466
No 189
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.47 E-value=1.1e+03 Score=27.68 Aligned_cols=16 Identities=38% Similarity=0.848 Sum_probs=8.0
Q ss_pred chhHHHH-HHHHHHHHh
Q psy8075 392 HPQHWLL-LDRLAQQLT 407 (1074)
Q Consensus 392 ~~~~~~l-ld~~v~qiv 407 (1074)
-+.-|++ ++++..|+.
T Consensus 192 d~~eWklEvERV~PqLK 208 (359)
T PF10498_consen 192 DPAEWKLEVERVLPQLK 208 (359)
T ss_pred CHHHHHHHHHHHhhhhe
Confidence 3445554 455555543
No 190
>KOG0213|consensus
Probab=24.43 E-value=2.6e+02 Score=35.37 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=51.9
Q ss_pred hhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCcc-HHHHHHHhhcCCChhhHHHHHHHHHHH
Q psy8075 147 FIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPG-AIDIIAQSLSTENIKTKIAVLEILGAV 225 (1074)
Q Consensus 147 Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~-~i~~la~sL~s~~~~tr~~v~elLaav 225 (1074)
|++.=|+..|+-+|..+........-.|.||+|+..|.-- .|.. ++.|-. .+.+|..+|..++.++|+...--|+|+
T Consensus 503 vasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail-~Gcs-vlphl~~lv~ii~~gl~De~qkVR~itAlalsal 580 (1172)
T KOG0213|consen 503 VASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAIL-SGCS-VLPHLKPLVKIIEHGLKDEQQKVRTITALALSAL 580 (1172)
T ss_pred HHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHH-hcch-hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHH
Confidence 4456799999999987654432333346788887644321 2443 444444 578888899999989998776666665
Q ss_pred hc
Q psy8075 226 CL 227 (1074)
Q Consensus 226 c~ 227 (1074)
.-
T Consensus 581 ae 582 (1172)
T KOG0213|consen 581 AE 582 (1172)
T ss_pred HH
Confidence 54
No 191
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.03 E-value=1.6e+03 Score=31.61 Aligned_cols=187 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred CcHHHHHHHhccCchHHHHHHHHHHHhHHhhHHHHHhhhcCCccCCCCHHHHHHHHHHHhcCCCChhhH------HHHHH
Q psy8075 307 GIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMFNILRRKLGHTAAYPHF------LSLLH 380 (1074)
Q Consensus 307 GL~~~l~~Lr~~~~~~L~~qi~~fe~~~~eDe~el~~~~~~~~~d~~~~~~v~~~l~~~~~~t~a~~~~------lSiLQ 380 (1074)
|+..+++.|+. .+..|.+-.++ .-...+-.++|+.|..--.+.-+.+|+ ..++.
T Consensus 227 ~v~~~i~~m~~--------~l~~~r~t~~~------------~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liE 286 (1486)
T PRK04863 227 GVRKAFQDMEA--------ALRENRMTLEA------------IRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLE 286 (1486)
T ss_pred hhhHHHHHHHH--------HHHHHHHHHHH------------HHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHH
Q ss_pred HhccCCccCCCchhHHHHHHHHHHHHhhhcccCCCccchhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 381 HCILLPLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLA 460 (1074)
Q Consensus 381 hLLli~~~~~~~~~~~~lld~~v~qivl~~~~g~d~d~~~l~~~v~~li~~l~~~~e~~~~~~~~eel~~e~~eL~~kl~ 460 (1074)
-.+-++..-......+.-.+.-+..|.-. -....+....|+-+......-+....+......++..+.....++..++.
T Consensus 287 EAag~r~rk~eA~kkLe~tE~nL~rI~di-L~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Le 365 (1486)
T PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARE-LAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLE 365 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q psy8075 461 KKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHR 514 (1074)
Q Consensus 461 ~~e~el~~k~~e~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~ 514 (1074)
+.+..+.....+.+++...+..+.+++..-..++....+.+..++.++..+...
T Consensus 366 e~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~ 419 (1486)
T PRK04863 366 EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQA 419 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 192
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.95 E-value=6.4e+02 Score=31.42 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=69.6
Q ss_pred HHHhhhhccchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q psy8075 854 AEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRLSEIE 933 (1074)
Q Consensus 854 v~~~~p~ll~f~~eL~~v~~Aakvs~~~l~~d~~~l~~~l~~~~~el~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~ 933 (1074)
+..++|++.....|... .+.+..+-...+.+..+...+..++..+...... +..+..--...+..+..|.
T Consensus 73 ~~~~~~~ie~~L~~ae~--~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~--------l~~L~~~e~~nr~~i~~l~ 142 (560)
T PF06160_consen 73 VTKQLPEIEEQLFEAEE--YADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDE--------LDELLESEEKNREEIEELK 142 (560)
T ss_pred HHHhhHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 33456665544433322 2446666666666777776666666665443211 1233333455567778888
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCC-----ChhhhHHHHHHHHH--HHHHHHHHHHHHHH
Q psy8075 934 DLFQDMKTRFDRAVRLFGEDNSSI-----QPEDFFVIFDTFLT--TLNEAKLDNENMKR 985 (1074)
Q Consensus 934 ~~~~~~~~~~~~l~~yfGEd~~~~-----~~~eFF~~~~~F~~--~f~~a~~en~~~~~ 985 (1074)
+.|..+.+.+-.-..-||..-..+ ..+.=|..|.+... .|.+|..-...++.
T Consensus 143 ~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~ 201 (560)
T PF06160_consen 143 EKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKE 201 (560)
T ss_pred HHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888877777788754322 22344444444443 37777776665543
No 193
>KOG0391|consensus
Probab=23.89 E-value=1.4e+02 Score=39.62 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHh
Q psy8075 48 ELNTMFEELVEE 59 (1074)
Q Consensus 48 ei~~~F~~ll~~ 59 (1074)
+=-..|.+.|+.
T Consensus 1130 ~Rkrql~erl~r 1141 (1958)
T KOG0391|consen 1130 ERKRQLKERLDR 1141 (1958)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 194
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.86 E-value=1.7e+03 Score=29.12 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy8075 699 DEEISKAIL 707 (1074)
Q Consensus 699 ~~ei~~aI~ 707 (1074)
.+.|+.+|.
T Consensus 567 a~vl~~al~ 575 (824)
T PRK07764 567 AEVLVTALA 575 (824)
T ss_pred hHHHHHHHH
Confidence 334444444
No 195
>KOG0250|consensus
Probab=23.65 E-value=6.1e+02 Score=33.69 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHh
Q psy8075 433 AKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRL-EKETAGHLEAKQKVAELEDRISEL 511 (1074)
Q Consensus 433 ~~~~e~~~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l-~~~~~~~~~~~~~~~~l~~~l~~l 511 (1074)
+.+++...+.+.+..+.++..++..+....++...+...+.+.+.+++..+++++ +....++......+..|..+++.+
T Consensus 334 ~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 334 AQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKL 413 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q psy8075 512 K 512 (1074)
Q Consensus 512 ~ 512 (1074)
.
T Consensus 414 e 414 (1074)
T KOG0250|consen 414 E 414 (1074)
T ss_pred H
No 196
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=23.63 E-value=1e+02 Score=23.43 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=25.4
Q ss_pred HHHhhhcCcHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q psy8075 144 VLRFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKAL 183 (1074)
Q Consensus 144 v~~Fi~~~Gl~~L~~~L~~~~~~~~~~~~~~~~l~Clkal 183 (1074)
.+..++.||+..|+++|. ..+..++.+++.||.-|
T Consensus 5 ~~~i~~~g~i~~Lv~ll~-----~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLK-----SPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHTTHHHHHHHHTT-----SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHc-----CCCHHHHHHHHHHHHHH
Confidence 456778999999999988 23444666777777654
No 197
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=23.57 E-value=1.8e+02 Score=25.60 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=38.2
Q ss_pred HHHHHHHHhcccccCCcchhHHHHHHHHHHhcChhhHHHhhcCccHHHHHHHhhcCCChhhHHHHHHHHHHH
Q psy8075 154 LTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAV 225 (1074)
Q Consensus 154 ~~L~~~L~~~~~~~~~~~~~~~~l~ClkalmN~~~G~~~vl~~~~~i~~la~sL~s~~~~tr~~v~elLaav 225 (1074)
..|++.|.. ..+..+...++.||. .. .+++++..|...|.++++.+|..++.-|+.+
T Consensus 2 ~~L~~~l~~----~~~~~vr~~a~~~L~-----~~------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQN----DPDPQVRAEAARALG-----EL------GDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHT----SSSHHHHHHHHHHHH-----CC------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhc----CCCHHHHHHHHHHHH-----Hc------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 345555532 223345566777765 11 3456789999999999999999998888754
No 198
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=23.55 E-value=27 Score=40.39 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=0.0
Q ss_pred HHHHHhhhhc
Q psy8075 643 VVDKLFCAYQ 652 (1074)
Q Consensus 643 ~lE~lF~~~~ 652 (1074)
.||++|..+.
T Consensus 50 ~LEdLF~~YG 59 (386)
T PF01698_consen 50 GLEDLFQGYG 59 (386)
T ss_dssp ----------
T ss_pred hHHHHHhhcc
Confidence 5677887763
No 199
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.94 E-value=6.6e+02 Score=29.97 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy8075 445 ADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRI 483 (1074)
Q Consensus 445 ~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l 483 (1074)
+.+++.++..+..++.+.+..+....+.++++...++.+
T Consensus 68 lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 68 LKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 200
>KOG0994|consensus
Probab=22.90 E-value=2e+03 Score=29.49 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhHHhhHHHHHhhh
Q psy8075 321 ETLDRHLDFFEMLRHEDESELARKY 345 (1074)
Q Consensus 321 ~~L~~qi~~fe~~~~eDe~el~~~~ 345 (1074)
+.+..|-+.+...++++..|+..-+
T Consensus 1453 q~~~~~a~as~~q~~~s~~el~~Li 1477 (1758)
T KOG0994|consen 1453 QRALEQANASRSQMEESNRELRNLI 1477 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655443
No 201
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=22.77 E-value=28 Score=40.20 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=3.9
Q ss_pred CcchHHHHHH
Q psy8075 843 GVTLLHYLVE 852 (1074)
Q Consensus 843 k~TLLhylv~ 852 (1074)
|.+=|+||-.
T Consensus 245 KKNGLDYLFH 254 (386)
T PF01698_consen 245 KKNGLDYLFH 254 (386)
T ss_dssp S-B-HHHHHH
T ss_pred cccCcchHHH
Confidence 3344555543
No 202
>KOG3080|consensus
Probab=22.71 E-value=5.7e+02 Score=28.86 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=28.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q psy8075 910 PGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEAKLDN 980 (1074)
Q Consensus 910 ~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfGEd~~~~~~~eFF~~~~~F~~~f~~a~~en 980 (1074)
+.|.|...| .|+.+|..-+...-..+.++.-.|. -|.++|.-+..==....+.++.+
T Consensus 133 ~eDDf~REl-aFYkQa~~aVl~A~~rL~elgV~~~-------------RP~DYfAEMaKSD~HMqKVr~~L 189 (328)
T KOG3080|consen 133 PEDDFAREL-AFYKQALSAVLEAFPRLHELGVPFL-------------RPTDYFAEMAKSDEHMQKVRQRL 189 (328)
T ss_pred chhHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcc-------------CchHHHHHHhhhHHHHHHHHHHH
Confidence 346666555 5777665554444334444433333 45555555544444444444443
No 203
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=22.33 E-value=1.3e+03 Score=27.18 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=3.5
Q ss_pred HHHHHHHHc
Q psy8075 700 EEISKAILS 708 (1074)
Q Consensus 700 ~ei~~aI~~ 708 (1074)
++|++.+.+
T Consensus 294 EelRrevss 302 (558)
T PF15358_consen 294 EELRREVSS 302 (558)
T ss_pred HHHHHHHHH
Confidence 344443333
No 204
>KOG4848|consensus
Probab=22.25 E-value=9.4e+02 Score=25.40 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhCCC
Q psy8075 936 FQDMKTRFDRAVRLFGED 953 (1074)
Q Consensus 936 ~~~~~~~~~~l~~yfGEd 953 (1074)
.........++-+|||.-
T Consensus 166 ~~r~erli~eiqe~fGy~ 183 (225)
T KOG4848|consen 166 EVRLERLIREIQEYFGYW 183 (225)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 344455667788899974
No 205
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.17 E-value=8.6e+02 Score=24.91 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcccCCCccchhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH----------------------------HH
Q psy8075 400 DRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELE----------------------------ME 451 (1074)
Q Consensus 400 d~~v~qivl~~~~g~d~d~~~l~~~v~~li~~l~~~~e~~~~~~~~eel~----------------------------~e 451 (1074)
+.++.++.-+++. +++..|+++|+..=.-..+..-++.+- .+
T Consensus 4 ~~Il~y~~~qNRP----------ys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~ee 73 (169)
T PF07106_consen 4 DAILEYMKEQNRP----------YSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEE 73 (169)
T ss_pred HHHHHHHHHcCCC----------CcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchh
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHhhh
Q psy8075 452 NVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDR--LEKETAGHLEAKQKVAELEDRISELKH 513 (1074)
Q Consensus 452 ~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~--l~~~~~~~~~~~~~~~~l~~~l~~l~~ 513 (1074)
..++..++.++..++....++...+..++..+... .++-........+++..++.++..+..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 206
>KOG2264|consensus
Probab=22.04 E-value=5.4e+02 Score=31.48 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8075 442 KKKADELEMENVDLSNRLAKKEQELDQKTQEKE 474 (1074)
Q Consensus 442 ~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e 474 (1074)
+.+..++..++.++..+++++.+.+.+++.|++
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~~q~eL~ 131 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQKQLELS 131 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333334444444444444444444444444333
No 207
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=21.78 E-value=30 Score=35.42 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=4.6
Q ss_pred HHHHhccC
Q psy8075 688 CTILLSKL 695 (1074)
Q Consensus 688 i~I~L~~l 695 (1074)
|+|++.++
T Consensus 74 L~iLfd~l 81 (157)
T PF07304_consen 74 LNILFDHL 81 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55665555
No 208
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.68 E-value=4.9e+02 Score=27.20 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8075 444 KADELEMENVDLSNRLA 460 (1074)
Q Consensus 444 ~~eel~~e~~eL~~kl~ 460 (1074)
+.+.+.++..+|+..++
T Consensus 93 ~~~~l~~ri~eLe~~l~ 109 (175)
T PRK13182 93 QLNTITRRLDELERQLQ 109 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444443333
No 209
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.67 E-value=6.1e+02 Score=27.16 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8075 496 EAKQKVAELEDRISELK 512 (1074)
Q Consensus 496 ~~~~~~~~l~~~l~~l~ 512 (1074)
....++.+|+.++..+.
T Consensus 59 ~a~~~i~eLe~ri~~lq 75 (233)
T COG3416 59 KASTQIKELEKRIAILQ 75 (233)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34456666766666543
No 210
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=21.50 E-value=64 Score=44.59 Aligned_cols=12 Identities=8% Similarity=0.423 Sum_probs=7.4
Q ss_pred CchhHHHHHHhh
Q psy8075 230 GGHKKVLDAMSH 241 (1074)
Q Consensus 230 ~Gh~~VL~Al~~ 241 (1074)
+||...+.+|+.
T Consensus 1077 ng~~qtvg~l~~ 1088 (1806)
T PRK14849 1077 NGSTQTVETFTG 1088 (1806)
T ss_pred cCchhhhhhhcc
Confidence 466666666653
No 211
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.39 E-value=8.4e+02 Score=24.52 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8075 440 AAKKKADELEMENVDLSNRLAKKEQELDQKTQEK 473 (1074)
Q Consensus 440 ~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~ 473 (1074)
.+.+++++++.+..++..+..+.+.++.......
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~ 44 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKN 44 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544443333
No 212
>KOG0980|consensus
Probab=21.18 E-value=1.1e+03 Score=30.85 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=5.8
Q ss_pred ccchHHHHHHh
Q psy8075 249 RSRFQGIVNDL 259 (1074)
Q Consensus 249 ~~RF~~lv~~l 259 (1074)
+.||..+..-|
T Consensus 225 RdRf~~qf~rL 235 (980)
T KOG0980|consen 225 RDRFHTQFERL 235 (980)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 213
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=21.16 E-value=66 Score=44.50 Aligned_cols=7 Identities=14% Similarity=0.786 Sum_probs=3.3
Q ss_pred CCccccc
Q psy8075 624 GTIWTEL 630 (1074)
Q Consensus 624 ~TiW~~~ 630 (1074)
..+|..+
T Consensus 1523 ts~W~R~ 1529 (1806)
T PRK14849 1523 SSMWMRH 1529 (1806)
T ss_pred CceEEEE
Confidence 3455443
No 214
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.03 E-value=3.1e+02 Score=23.11 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy8075 451 ENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEK 489 (1074)
Q Consensus 451 e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~~ 489 (1074)
+..+++.++...+..+...+.+.+++...++++.+.+++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 215
>KOG1943|consensus
Probab=21.02 E-value=2.1e+03 Score=29.02 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHhhHHHHcccccchHHHHHHhhhccCCccchhHHHHHHHHHHHHHhcC
Q psy8075 214 TKIAVLEILGAVCLIPGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSY 286 (1074)
Q Consensus 214 tr~~v~elLaavc~~~~Gh~~VL~Al~~~~~~~~e~~RF~~lv~~l~~~~~~~~~~~~~~~a~m~lIN~lv~~ 286 (1074)
.-.+++|.|-.+|-+ .||+.|+.+|.|= -.+-..++..|+..+....++++.+.-.+.-.-.++.+
T Consensus 90 ~~~l~~e~ly~l~kv-rgyK~v~k~fPh~------V~~Le~il~lL~~~npss~~~~~~ryilLlWLsvllln 155 (1133)
T KOG1943|consen 90 ELHLAFEYLYILCKV-RGYKAVLKLFPHQ------VSDLEPILDLLERQNPSSFSDWETRYILLLWLSVLLLN 155 (1133)
T ss_pred hhHHHHHHHHHHHhh-ccchhhHHhCCcH------HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHcC
Confidence 336788899999999 4899999999863 24455777777632211123344444444455555554
No 216
>KOG0995|consensus
Probab=20.88 E-value=8.5e+02 Score=30.09 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=19.9
Q ss_pred cHHHHHHHHH-hcccccCC-cchhHHHHHHHHHH
Q psy8075 152 GLLTLLEYLK-NLDHYSGQ-TSLHSSIIGCIKAL 183 (1074)
Q Consensus 152 Gl~~L~~~L~-~~~~~~~~-~~~~~~~l~Clkal 183 (1074)
++...+.+|. +++..... ..++-+++.|||+|
T Consensus 104 dF~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK~L 137 (581)
T KOG0995|consen 104 DFIAIFKFLYGFLDPDYEFPERIEEEVVQILKNL 137 (581)
T ss_pred cHHHHHHHHHhccCCCcccchhHHHHHHHHHHhC
Confidence 4445666654 34443333 56778899999974
No 217
>KOG2072|consensus
Probab=20.80 E-value=9e+02 Score=31.23 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=16.9
Q ss_pred HHHHHHhhhhccCchhhHHHhhhcCcHHHHHHHHHh
Q psy8075 127 RILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKN 162 (1074)
Q Consensus 127 ~~l~~L~v~Lrt~~~~Wv~~Fi~~~Gl~~L~~~L~~ 162 (1074)
..|.+|.-..+.....|-+.|++ .+.+.+|.-
T Consensus 26 ~ALqsLhd~i~~kr~r~~q~~~E----pIMfKyleL 57 (988)
T KOG2072|consen 26 DALQSLHDTITAKRHRWWQTVLE----PIMFKYLEL 57 (988)
T ss_pred HHHHHHHHHHHHHHHhhhccchH----HHHHHHHHH
Confidence 34444444444445567676664 345555554
No 218
>PRK09039 hypothetical protein; Validated
Probab=20.76 E-value=6.3e+02 Score=29.36 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy8075 441 AKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLE 488 (1074)
Q Consensus 441 ~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~ 488 (1074)
...++.-++.++..|+.++..++.++........+....+..+..+|+
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445554444444443333334444444444433
No 219
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.74 E-value=6.1e+02 Score=25.47 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---------CCCC--------------------CCChhhhHHHHHHHHHHHHHHH
Q psy8075 927 CRLSEIEDLFQDMKTRFDRAVRLFG---------EDNS--------------------SIQPEDFFVIFDTFLTTLNEAK 977 (1074)
Q Consensus 927 ~~~~~L~~~~~~~~~~~~~l~~yfG---------Ed~~--------------------~~~~~eFF~~~~~F~~~f~~a~ 977 (1074)
+++..|++.+..+-..|...+.|.- .+.. ..++++|=.....|...+-...
T Consensus 3 DrlTQLQd~ldqL~~~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~ka 82 (144)
T PF11221_consen 3 DRLTQLQDCLDQLAEQFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIRKA 82 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888842 2220 0245788888888888888777
Q ss_pred HHHHHH
Q psy8075 978 LDNENM 983 (1074)
Q Consensus 978 ~en~~~ 983 (1074)
++++.+
T Consensus 83 kqIe~L 88 (144)
T PF11221_consen 83 KQIEYL 88 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 220
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.68 E-value=1.5e+03 Score=27.26 Aligned_cols=152 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHhcCCCChhhHHHHHHHhccCCccCCC--------------------------------chhHHHHHHHHHHHHhhh
Q psy8075 362 LRRKLGHTAAYPHFLSLLHHCILLPLEFGC--------------------------------HPQHWLLLDRLAQQLTLQ 409 (1074)
Q Consensus 362 l~~~~~~t~a~~~~lSiLQhLLli~~~~~~--------------------------------~~~~~~lld~~v~qivl~ 409 (1074)
|--+.-+-|...-|.+|+.||.+--+-.-. ++|.|-.|=.+++-+|-.
T Consensus 126 is~k~l~~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~l 205 (622)
T COG5185 126 ISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIENEVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRL 205 (622)
T ss_pred hhHHHhcCCccccHHHHHHHHHhccCCCCCcchhhHHHHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHH
Q ss_pred cccCCCccchhhh-hhHHHHHHHHhhH------------------------------------------HHHHHHHHHHH
Q psy8075 410 TETGEDYDHILLK-INVKKVVHLLAKE------------------------------------------EEIVAAKKKAD 446 (1074)
Q Consensus 410 ~~~g~d~d~~~l~-~~v~~li~~l~~~------------------------------------------~e~~~~~~~~e 446 (1074)
-...|.-++.+. ++-+..-+.+++. +..+.-.+.+.
T Consensus 206 -i~~~~~~~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~ 284 (622)
T COG5185 206 -IIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLY 284 (622)
T ss_pred -HHHHHHHHhhhchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q psy8075 447 ELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHR 514 (1074)
Q Consensus 447 el~~e~~eL~~kl~~~e~el~~k~~e~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~ 514 (1074)
+.-++..++.+....++....+.....-......+.|+.+.++......++...+..-+++++.|...
T Consensus 285 e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~ 352 (622)
T COG5185 285 EKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSN 352 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
No 221
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.52 E-value=4.8e+02 Score=29.10 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8075 423 INVKKVVHLLAKEEE---IVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKE 474 (1074)
Q Consensus 423 ~~v~~li~~l~~~~e---~~~~~~~~eel~~e~~eL~~kl~~~e~el~~k~~e~e 474 (1074)
++|+-|+..+..-.. +..+++++..++.+..++...++.+|.++.....+++
T Consensus 157 ~dvevLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~ 211 (259)
T PF08657_consen 157 VDVEVLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLE 211 (259)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655443222 1345566666666666666666655555544444433
No 222
>KOG4603|consensus
Probab=20.50 E-value=9.7e+02 Score=24.89 Aligned_cols=82 Identities=11% Similarity=0.212 Sum_probs=50.3
Q ss_pred cchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 862 LKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPL--VPGDRFLPVMKEFLTSATCRLSEIEDLFQDM 939 (1074)
Q Consensus 862 l~f~~eL~~v~~Aakvs~~~l~~d~~~l~~~l~~~~~el~~~~~~~~--~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~ 939 (1074)
.....||..+..| +++++++.++++|++.+...+.-|...+.... .|.|+ ..+....+.-..+....
T Consensus 103 s~veaEik~L~s~--Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk---------~~v~~~y~~~~~~wrk~ 171 (201)
T KOG4603|consen 103 SYVEAEIKELSSA--LTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDK---------EQVYREYQKYCKEWRKR 171 (201)
T ss_pred HHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH---------HHHHHHHHHHHHHHHHH
Confidence 3445667666655 88999999999999988888887776554321 22221 22223333344445555
Q ss_pred HHHHHHHHHHhCCCC
Q psy8075 940 KTRFDRAVRLFGEDN 954 (1074)
Q Consensus 940 ~~~~~~l~~yfGEd~ 954 (1074)
+..|.++..-+-|+.
T Consensus 172 krmf~ei~d~~~e~~ 186 (201)
T KOG4603|consen 172 KRMFREIIDKLLEGL 186 (201)
T ss_pred HHHHHHHHHHHHcCC
Confidence 556777766666664
No 223
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.36 E-value=3.8e+02 Score=27.54 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8075 880 KELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLP--VMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRL 949 (1074)
Q Consensus 880 ~~l~~d~~~l~~~l~~~~~el~~~~~~~~~~~D~f~~--~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~y 949 (1074)
.....+..+++..+..+++|+... ...|.|.+ ++..=++....+++.+.+.....+..|.....+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~i-----S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAI-----SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS------TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888887543 23566764 445556666666666666666666666665554
No 224
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=20.19 E-value=3e+02 Score=24.45 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcChhhHHHhhcCccHHHHHH-HhhcCCChhhHHHHHHHHHHHhccCCchhHH
Q psy8075 175 SIIGCIKALMNNSTGRSHVLGYPGAIDIIA-QSLSTENIKTKIAVLEILGAVCLIPGGHKKV 235 (1074)
Q Consensus 175 ~~l~ClkalmN~~~G~~~vl~~~~~i~~la-~sL~s~~~~tr~~v~elLaavc~~~~Gh~~V 235 (1074)
.++=|+-++--+++|+..+- +.+.|..|. .+-.++.+..|-.++=.|+-++-...|.+..
T Consensus 6 aaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L 66 (73)
T PF14668_consen 6 AALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEIL 66 (73)
T ss_pred HHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 46778999999999998886 445555554 4556888999999988888888877777654
No 225
>KOG0980|consensus
Probab=20.18 E-value=1e+03 Score=31.05 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=5.7
Q ss_pred CchHHHHHHHHHH
Q psy8075 758 PHYEQRLRCLHYK 770 (1074)
Q Consensus 758 p~~~~RL~~l~fk 770 (1074)
...-.||..|.-|
T Consensus 761 ~~A~~rie~~~~K 773 (980)
T KOG0980|consen 761 EDAVSRIEAIAAK 773 (980)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445444433
No 226
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=20.17 E-value=89 Score=24.49 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=25.8
Q ss_pred HhhcCccHHHHHHHhhcCCChhhHHHHHHHH
Q psy8075 192 HVLGYPGAIDIIAQSLSTENIKTKIAVLEIL 222 (1074)
Q Consensus 192 ~vl~~~~~i~~la~sL~s~~~~tr~~v~elL 222 (1074)
.++.++.....|...|.-+.+.+|..++++|
T Consensus 12 ~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 12 TLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred cccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4566677788888989989999999999875
Done!