RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8075
(1074 letters)
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 424 bits (1092), Expect = e-138
Identities = 216/484 (44%), Positives = 330/484 (68%), Gaps = 27/484 (5%)
Query: 602 PRSKLK----SRIPRPYFPNVSVQVNGTIWTELDESKLYASMELEVVDKLFCAYQKNGVP 657
P + LK S++P ++ GT+WTE+D++K++ ++LE +++ F AYQ+
Sbjct: 11 PTNALKSFNWSKLPEN-------KLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDF 63
Query: 658 ADGSVEDLTKLGKIS-------KSKILSVIDGRRAQNCTILLSKLKMTDEEISKAILSMD 710
S + I K K LSVIDGRRAQNC ILLS+LK++++EI +AIL+MD
Sbjct: 64 FVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMD 123
Query: 711 SADQLPLDMLEQLLKFTPNTEEAALLEEHS--TETLARADRFLYEISKIPHYEQRLRCLH 768
+ LP DMLEQLLKF P + LLEEH + +A+ADRFL+E+S+I HY+QRL+ L+
Sbjct: 124 EQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLY 183
Query: 769 YKKRFHFWISDIEPKIKSVMEASREVTRSRRLRKLLELVLALGNYMNKGARGNASGFRLT 828
+KK+F +++++PK++++ S EV RS L++LLE+VLA GNYMNKG RGNA GF+++
Sbjct: 184 FKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQRGNAYGFKIS 243
Query: 829 SLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQ 888
SLNK+ DTKSS + +TLLHYL+ + E ++ VL L E+L + +A+KV+M EL+ +++
Sbjct: 244 SLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEIST 303
Query: 889 LRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVR 948
LR+ LK V E+E+Q+ QP PGD+F+ V+ +F+T A+ S++EDL + K F +AV+
Sbjct: 304 LRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVK 363
Query: 949 LFGEDNSSIQPEDFFVIFDTFLTTLNEAKLDNENMKRRREEEEKRARQDAEMKKRTTDRK 1008
FGE+ IQP++FF IFD FL ++EAK +NENM++++EEEE+RAR +A++K++ +
Sbjct: 364 HFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERER 423
Query: 1009 QGAKENGVVISNGSVKGEFDDLISALRTGDVFGEDSIAKIKRSRRSRHSPSSAREDTRER 1068
+ K N GEFDDL+SALR+G+VF +D +K+KR+R+ + + + +RER
Sbjct: 424 KMRKAK----ENSEESGEFDDLVSALRSGEVFDKDL-SKLKRNRKRITNQMT--DSSRER 476
Query: 1069 VIGK 1072
I K
Sbjct: 477 PITK 480
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 384 bits (989), Expect = e-123
Identities = 118/435 (27%), Positives = 210/435 (48%), Gaps = 8/435 (1%)
Query: 624 GTIWTELDESKLYASMELEVVDKLFCAYQKNGVP-ADGSVEDLTKLGKISKSKILSVIDG 682
WT++ E + + + F A K D + K + K K L V+D
Sbjct: 26 DCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKVLDS 85
Query: 683 RRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLEEHS-- 740
+ AQN +I L +M +EI IL ++ L M++ L+K P E+ +L E
Sbjct: 86 KTAQNLSIFLGSFRMPYQEIKNVILEVNE-AVLTESMIQNLIKQMPEPEQLKMLSELKEE 144
Query: 741 TETLARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTRSRRL 800
+ LA +++F + +P RL + +K +F + +I+P+I SV A E+ +S
Sbjct: 145 YDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENF 204
Query: 801 RKLLELVLALGNYMNKG-ARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFK 859
LLEL L +GNYMN G A GF ++ L KL DTKS+ + +TLLH+L EL E
Sbjct: 205 SSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSAD-QKMTLLHFLAELCENDHP 263
Query: 860 EVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMK 919
EVLK ++L HV++AS+VS + L+ + Q++ + +V R+++ D+F+ M
Sbjct: 264 EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFP-AATDEKDKFVEKMT 322
Query: 920 EFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEAKLD 979
F+ A + +++ + +M+T + F D + E+FF+ F +A +
Sbjct: 323 SFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKE 382
Query: 980 NENMKRRREEEEKRARQDAEMKKRTTDRKQGAKENGVVISNGSVKGEFDDLISALRTGDV 1039
N+ + E+ + + +K +++Q ++ + + G G D L+ AL++G
Sbjct: 383 NQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEALQSGAA 442
Query: 1040 FGEDSIAKIKRSRRS 1054
F + +R++
Sbjct: 443 FRRKR-GPRQVNRKA 456
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 339 bits (870), Expect = e-108
Identities = 106/340 (31%), Positives = 178/340 (52%), Gaps = 7/340 (2%)
Query: 673 KSKILSVIDGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEE 732
K K L V+D + AQN +I L +M +EI IL ++ L M++ L+K P E+
Sbjct: 5 KVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNE-AVLTESMIQNLIKQMPEPEQ 63
Query: 733 AALLEEHS--TETLARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEA 790
+L E + LA +++F + +P RL + +K +F + +I+P+I SV A
Sbjct: 64 LKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAA 123
Query: 791 SREVTRSRRLRKLLELVLALGNYMNKG-ARGNASGFRLTSLNKLVDTKSSSSRGVTLLHY 849
E+ +S LLEL L +GNYMN G A GF ++ L KL DTK S+ + +TLLH+
Sbjct: 124 CEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTK-SADQKMTLLHF 182
Query: 850 LVELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLV 909
L EL E EVLK ++L HV++AS+VS + L+ + Q++ + +V R+++
Sbjct: 183 LAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAAT-D 241
Query: 910 PGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTF 969
D+F+ M F+ A + +++ + +M+T + F D + E+FF+ F
Sbjct: 242 EKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNF 301
Query: 970 LTTLNEAKLDNENMKRRREEEEKRARQDAEMKKRTTDRKQ 1009
+A +N+ +R EE+ +RA+ E ++ KQ
Sbjct: 302 RNMFLQAVKENQK-RRETEEKMRRAKLAKEKAEKERLEKQ 340
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 307 bits (787), Expect = 6e-95
Identities = 84/428 (19%), Positives = 164/428 (38%), Gaps = 54/428 (12%)
Query: 602 PRSKLK----SRIPRPYFPNVSVQVNGTIWTELDESKLYASMELEVVDKLFCAYQKNGVP 657
P KLK ++ + GT E LY L ++K F A + +
Sbjct: 5 PHKKLKQLHWEKLD-----CTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLA 59
Query: 658 ADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILLSKLK-MTDEEISKAILSMDSADQLP 716
+ + + ++ + +Q I L ++ ++ K IL+ D D L
Sbjct: 60 S----------KRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDR-DFLQ 108
Query: 717 LDMLEQLL--------------KFTPNTEEAALLEEHST--------ETLARADRFLYE- 753
+ + L + P + + + L RAD+ +
Sbjct: 109 TPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQL 168
Query: 754 -ISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTRSRRLRKLLELVLALGN 812
++ ++ R+R L + +++ K++ V +A + S LR + ++LA+GN
Sbjct: 169 MVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGN 228
Query: 813 YMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEVLKLEEDLCHVK 872
+MN ++ A GF+L++L +L K ++ +T L+Y+ ++ + +L V
Sbjct: 229 FMNDTSK-QAQGFKLSTLQRLTFIK-DTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVL 286
Query: 873 EASKVSMKELENDMTQLRNNLKEVSREIEFQRVQP---LVPGDRFLPVMKEFLTSATCRL 929
+ KVS+++L ND ++ V R +E + P D+ L L A +
Sbjct: 287 DVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKG 346
Query: 930 SEIEDLFQDMKTRFDRAVRLFGEDNSS-IQPEDFFVIFDTFLTTLNEAKLDNENMKRRRE 988
+ED + F+ + +GED+ FF F F+ +A+ N E
Sbjct: 347 DLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNL---AAEE 403
Query: 989 EEEKRARQ 996
EE +
Sbjct: 404 EERLYIKH 411
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO
proteins, formins, armadillo repeat, G-protein, GTPase,
alternative splicing; HET: GNP; 2.70A {Mus musculus}
PDB: 1z2c_B*
Length = 383
Score = 265 bits (678), Expect = 5e-80
Identities = 94/400 (23%), Positives = 183/400 (45%), Gaps = 33/400 (8%)
Query: 38 TPTLPIPPTNELNTMFEELVEELDLTAPNKAAMLSLPDEKKWQIYCS---RKMDQTSTTD 94
+L ++ +FE+++ +++L + + K ++ + +
Sbjct: 4 AQSLQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKE 63
Query: 95 APDNPEQYIEQLRNFKSSPLTEHDDTEIKSRTRILDSLRTALRTQPHSFVLRFIECEGLL 154
+ + YI++LR+ L+SLR +L + P S+V F EGL
Sbjct: 64 SSRSAMMYIQELRSGLRDMHL----------LSCLESLRVSLTSHPVSWVQTF-GAEGLA 112
Query: 155 TLLEYLKNLDHYSGQTS------LHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLS 208
+LL+ LK L +TS II C+KA MNN G +L I ++ +++
Sbjct: 113 SLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD 172
Query: 209 TENIKTKIAVLEILGAVCLI---PGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGI 265
I ++L A+C++ +++VL+AM+ +E RFQ +++ L T
Sbjct: 173 PAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGT-- 229
Query: 266 YRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRTHENETLDR 325
+++K + +NA+++ L+FR+H+R E++ LG+ ++ +LR ENE +
Sbjct: 230 ---SIALKVGCLQLINALITPAE---ELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 283
Query: 326 HLDFFEMLRHEDESELARKYETDHIETKSATSMFNILRRKLGHTAAYPHFLSLLHHCILL 385
L F+ ED +L + + +E +F I+ + + A PHFLS+L H +L+
Sbjct: 284 QLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLV 343
Query: 386 PLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHILLKINV 425
++ PQ++ L++ Q+ L + G D D + +
Sbjct: 344 RNDYEARPQYYKLIEECVSQIVLH-KNGTDPDFKCRHLQI 382
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 239 bits (610), Expect = 2e-70
Identities = 103/404 (25%), Positives = 194/404 (48%), Gaps = 37/404 (9%)
Query: 94 DAPDNPEQYIEQLRNFKSSPLTEHDDTEIKSRTRILDSLRTALRTQPHSFVLRFIECEGL 153
++ + YI++LR+ L+SLR +L P S+V F EGL
Sbjct: 1 ESSRSAMMYIQELRSGLRDMHL----------LSCLESLRVSLNNNPVSWVQTF-GAEGL 49
Query: 154 LTLLEYLKNLDHYSGQTS------LHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSL 207
+LL+ LK L +TS II C+KA MNN G +L I ++ +++
Sbjct: 50 ASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM 109
Query: 208 STENIKTKIAVLEILGAVCLI---PGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTG 264
I ++L A+C++ +++VL+AM+ +E RFQ +++ L T
Sbjct: 110 DPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGT- 167
Query: 265 IYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRTHENETLD 324
+++K + +NA+++ L+FR+H+R E++ LG+ ++ +LR ENE +
Sbjct: 168 ----SIALKVGCLQLINALITPAE---ELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220
Query: 325 RHLDFFEMLRHEDESELARKYETDHIETKSATSMFNILRRKLGHTAAYPHFLSLLHHCIL 384
L F+ ED +L + + +E +F I+ + + A PHFLS+L H +L
Sbjct: 221 VQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLL 280
Query: 385 LPLEFGCHPQHWLLLDRLAQQLTLQTE-TGEDYDHILLKINVKKVVHLLAKEEEIVAAKK 443
+ ++ PQ++ L++ Q+ L T D+ L+I+++++V + + ++ ++
Sbjct: 281 VRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSEA 340
Query: 444 KADELE-------MENVDLSNRLAKKEQELDQKTQEKEDLDESL 480
KA ELE +L + K E + +QK Q+ + ++L
Sbjct: 341 KATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDAL 384
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein
complex, armadillo repeats, structural protein; 2.10A
{Mus musculus}
Length = 233
Score = 179 bits (454), Expect = 3e-51
Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 29/252 (11%)
Query: 99 PEQYIEQLRNFKSSPLTEHDDTEIKSRTRILDSLRTALRTQPHSFVLRFIECEGLLTLLE 158
YI++LR+ L+SLR +L P S+V F EGL +LL+
Sbjct: 2 AMMYIQELRSGLRDMHL----------LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLD 50
Query: 159 YLKNLDHYSGQTS------LHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENI 212
LK L +TS II C+KA MNN G +L I ++ +++
Sbjct: 51 ILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 110
Query: 213 KTKIAVLEILGAVCLIP---GGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTD 269
I ++L A+C++P +++VL+AM+ +E RFQ +++ L T
Sbjct: 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGT-----S 164
Query: 270 VSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRTHENETLDRHLDF 329
+++K + +NA+++ L+FR+H+R E++ LG+ ++ +LR ENE + L
Sbjct: 165 IALKVGCLQLINALITPAE---ELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCV 221
Query: 330 FEMLRHEDESEL 341
F+ ED +L
Sbjct: 222 FDEQGDEDFFDL 233
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding
domain, ubiquitin-superfold, armadillo repeats,
actin-binding, coiled coil; 2.30A {Homo sapiens}
Length = 339
Score = 109 bits (274), Expect = 5e-26
Identities = 47/311 (15%), Positives = 102/311 (32%), Gaps = 25/311 (8%)
Query: 39 PTLPIPPTNELNTMFEELVEELDLTAPNKAAMLSLPDEKKWQ-----IYCSRKMDQTSTT 93
PT + L + L + + L + + + R+M +
Sbjct: 41 PTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPSGYYLDTELSLEEQREMLEGFYE 100
Query: 94 DAPDNPEQYIE---QLRNFKSSPLTEHDDTEIKSRTRILDSLRTALRTQPHSFVLRFIEC 150
+ + + QL ++ L + + R L SL+ + V F+
Sbjct: 101 EISKGRKPTLILRTQLSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDK-DLVPEFVHS 159
Query: 151 EGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTE 210
EGL L+ DH + S I+ + LM G V+ + I + ++
Sbjct: 160 EGLSCLIRVGAAADH-----NYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASL 214
Query: 211 NIKTKIAVLEILGAVCL-IPGGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTD 269
+ L++L + A++ + +V+ L++ G D
Sbjct: 215 SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAP-PWANLVSILEEKNG---AD 270
Query: 270 VSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKL--RTHENETLDRHL 327
+ ++ +N L+ P Q + + + G++ ++ + + L L
Sbjct: 271 PELLVYTVTLINKTLAALPDQ---DSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327
Query: 328 DFFE-MLRHED 337
+E L+ ED
Sbjct: 328 VLYENALKLED 338
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 4e-11
Identities = 76/430 (17%), Positives = 144/430 (33%), Gaps = 114/430 (26%)
Query: 97 DNPEQYIEQLRNFK---SSPLTEHDDTEIKSRTRILD---SLRTALRTQPHS---FVLR- 146
++PE +E L+ T D + RI LR L+++P+ VL
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 147 ---------F-IECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGY 196
F + C+ LLT + + D S T+ H S+ L + +S +L Y
Sbjct: 253 VQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKY 310
Query: 197 PGAIDIIAQSLSTENIKTKIAVLEILGAVCLIPGGHKKVLDAMSHYQRF----CNERSR- 251
+D Q L E + T L I+ + D ++ + + C++ +
Sbjct: 311 ---LDCRPQDLPREVLTTNPRRLSIIAE---------SIRDGLATWDNWKHVNCDKLTTI 358
Query: 252 FQGIVNDLD--------KSTGIYRTDVSIKTALMSFL-NAVLSYGPGQ-------HSL-- 293
+ +N L+ ++ I T L+S + V+ +SL
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 294 ------EFRLHLRYEVIMLGI-------QPIIDKLRTHE----NETLDRHLD--FFEML- 333
+ Y + + + + I+D + ++ + +LD F+ +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 334 RHEDESELARKYE------TDHIETKSATSMFNILRRKLGHTA-AYPHFLSLLHHCILLP 386
H E + D F L +K+ H + A+ S+L+ L
Sbjct: 479 HHLKNIEHPERMTLFRMVFLD----------FRFLEQKIRHDSTAWNASGSILN--TLQQ 526
Query: 387 LEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHILLKINVKKVVH---------LLAKEEE 437
L+F + + D ++L L KI + L+A++E
Sbjct: 527 LKF--YKPYICDNDPKYERLV------NAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 438 IVA-AKKKAD 446
I A K+
Sbjct: 579 IFEEAHKQVQ 588
Score = 61.8 bits (149), Expect = 1e-09
Identities = 89/635 (14%), Positives = 185/635 (29%), Gaps = 177/635 (27%)
Query: 290 QHSLEF---RLHLRYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYE 346
H ++F +Y+ I+ + + D ++ + + K E
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVD---------N--FDCKDVQ--DMPKSILSKEE 50
Query: 347 TDHI-ETKSATS----MFNILRRKLGHTAAYPHFLSLLHHCILLPLEFGCHPQHWLLLDR 401
DHI +K A S +F L K F+ +L + + +L+
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKFVE-----EVLRINYK-----FLM-SP 97
Query: 402 LA---QQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELE-MENVDL-- 455
+ +Q ++ T + L N + +++ + + ++ EL +NV +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 456 ------SNRLAKKEQELDQKTQEKED-----LD-ESLSRIKDRLEKETAGHLEAKQKVAE 503
+ +A + L K Q K D L+ ++ + + LE +
Sbjct: 158 VLGSGKTW-VAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 504 LEDRISELKHRADFEQDERKRL---ENLINSGSVPDD-------------------TKAV 541
D S +K R Q E +RL + N V + T+
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 542 GLSRSGGREEPSSPR---------KPEAP---SSCIPPPPPPASLPP------P------ 577
++ + E + P LP P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSII 333
Query: 578 -----PPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPRPY------FP---NVSVQVN 623
+ ++ C + L + + L+ R FP ++ +
Sbjct: 334 AESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 624 GTIWTELDESKLYASMELEVVDKLFCAY---QKNGVPADGSVEDLT--KLGKISKSKIL- 677
IW ++ +S ++ VV Y +K + S+ + K+ L
Sbjct: 393 SLIWFDVIKS------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 678 -SVIDGRRAQ------NCTIL-------------LSKLKMTDEE------------ISKA 705
S++D + L ++ + + +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 706 ILSMDSADQLP---LDMLEQLLKFTPNTEEAALLEEHSTETLARADRFLYEISK-IPHYE 761
I +A L+ L+QL + + + + + +R + I +P E
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFY----------KPYICDNDPKYERLVNAILDFLPKIE 556
Query: 762 QRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTR 796
+ L C Y + + I EA ++V R
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAI--FEEAHKQVQR 589
Score = 61.0 bits (147), Expect = 2e-09
Identities = 39/278 (14%), Positives = 93/278 (33%), Gaps = 64/278 (23%)
Query: 49 LNTMFEELVEELDLTAPNKAAML--SLPDEK-KWQIYCSRKMDQTSTT-----DA--PDN 98
L+ ++L E+ T P + +++ S+ D W + D+ +T + P
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 99 PEQYIEQLRNF-KSSPLTEH-------DDTEIKSRTRILDSL--RTALRTQPHSFVLRFI 148
+ ++L F S+ + D + +++ L + + QP +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSLVEKQPKESTIS-- 427
Query: 149 ECEGLLTLLEYLKNLDHYSGQTSLHSSIIGC---IKALMNNSTGRSHVLGYPGAIDI--- 202
+ ++ YL+ + +LH SI+ K ++ ++ Y
Sbjct: 428 ----IPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-----FYSH 476
Query: 203 IAQSLSTENIKTKIAVLEIL--------------GAVCLIPGGHKKVLDAMSHYQRF-CN 247
I L ++ + ++ G L + Y+ + C+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 248 ERSRFQGIVNDLDK-----STGIYR---TDVSIKTALM 277
+++ +VN + + TD+ ++ ALM
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDL-LRIALM 573
Score = 59.5 bits (143), Expect = 5e-09
Identities = 91/643 (14%), Positives = 184/643 (28%), Gaps = 191/643 (29%)
Query: 237 DAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFR 296
D +S ++ V++ D DV ++LS E
Sbjct: 20 DILSVFE---------DAFVDNFDCK------DVQ------DMPKSILS------KEEID 52
Query: 297 LHLRYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSAT 356
+ + + G + L + + E + + F E + + L +T+ + T
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQK---FVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 357 SMFNILRRKLGHTAAY--PHFLSLLHHCILLPLEFGCHPQHWLLLDRLAQQLTLQ----- 409
M+ R +L + + +S L + L + LL R A+ + +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--------RQALLELRPAKNVLIDGVLGS 161
Query: 410 ------TETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADE-LEMENVDLSNRLAKK 462
+ Y + K++ K + L + + LEM L ++
Sbjct: 162 GKTWVALDVCLSYK-VQCKMDFK--IFWLN-----LKNCNSPETVLEMLQ-KLLYQIDPN 212
Query: 463 -EQELDQKT---QEKEDLDESLSR-IKDRLEKE---------TAGHLEA---KQKV---- 501
D + + L R +K + + A A K+
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 502 --AELEDRISELKHRADFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSSPRKPE 559
++ D +S L PD+ K++ L + PR E
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLT--------PDEVKSL-LLKYLDCRPQDLPR--E 321
Query: 560 APS------SCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPRP 613
+ S I S+ + ++ C + L + + L+ R
Sbjct: 322 VLTTNPRRLSIIA-----ESIRDGL--ATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRK 373
Query: 614 Y------FP---NVSVQVNGTIWTELDESKLYASMELEVVDKLFCAY---QKNGVPADGS 661
FP ++ + IW ++ +S ++ VV Y +K + S
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKS------DVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 662 VEDLT--KLGKISKSKIL--SVIDGRRAQ------NCTIL-------------LSKLKMT 698
+ + K+ L S++D + L ++
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 699 DEE------------ISKAILSMDSADQLP---LDMLEQL-------------------- 723
+ + + I +A L+ L+QL
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 724 -LKFTPNTEEAALLEEHSTETLARADRFLYEISKIPHYEQRLR 765
L F P EE + ++ T+ L A + E I +E+ +
Sbjct: 548 ILDFLPKIEENLICSKY-TDLLRIA--LMAEDEAI--FEEAHK 585
Score = 59.5 bits (143), Expect = 6e-09
Identities = 77/526 (14%), Positives = 157/526 (29%), Gaps = 160/526 (30%)
Query: 89 QTSTTDAPDNPEQYIEQLRNFKSS--PLTEHDDTEIKSRTRILDSLRTALRT-QPHSFV- 144
+T YIEQ + +++ SR + LR AL +P V
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQALLELRPAKNVL 154
Query: 145 --------------------------------LRFIECEGLLTLLEYLKNLDHYSGQTSL 172
L C T+LE L+ L
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--------- 205
Query: 173 HSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLST--ENIKTKIAVLEILGAVCLIPG 230
+ N ++ H I I L ++ + +L +L V
Sbjct: 206 ------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQ---- 254
Query: 231 GHKKVLDAMSHYQRFCNER----SRFQGIVNDLDKSTGIYRTDVSIKTALMSF-----LN 281
+ K +A + C + +RF+ + + L T +S+ M+ +
Sbjct: 255 -NAKAWNAFNLS---C--KILLTTRFKQVTDFLS---AATTTHISLDHHSMTLTPDEVKS 305
Query: 282 AVLSYGPGQHSLEFRLH-LRYEVIMLGIQP-----IIDKLRTH-------ENETLDRHLD 328
+L Y L+ R L E +L P I + +R ++ D+
Sbjct: 306 LLLKY------LDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 329 FFEM-LRHEDESELARKYETDHIETKSATSMF----NILRRKLGHTAAYPHFLSLLHHCI 383
E L + +E + ++ S+F +I P LL +
Sbjct: 358 IIESSLNVLEPAEYRKMFD--------RLSVFPPSAHI-----------P--TILL--SL 394
Query: 384 L-------LPLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEE 436
+ + + L+++ ++ T+ I L++ K+ + A
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------IPSIYLELK-VKLENEYALHR 447
Query: 437 EIVAA-----KKKADELEMENVD------LSNRLAKKEQELDQKTQEKEDLDESLSRIKD 485
IV +D+L +D + + L E ++ + ++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH--PERMTLFRMVFLDFRFLEQ 505
Query: 486 RLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
++ ++ A + + + +LK + D + E L+N+
Sbjct: 506 KIRHDST----AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Score = 53.7 bits (128), Expect = 3e-07
Identities = 103/622 (16%), Positives = 195/622 (31%), Gaps = 148/622 (23%)
Query: 404 QQLTLQTETGEDYDHILLKINVKKVVH-----LLAKEEEIVAAKKKADELEMENVD-LSN 457
Q + + E+ DHI++ + LL+K+EE+V +K +E+ N L +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMS 96
Query: 458 RLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADF 517
+ E Q + E R+ + + ++ Q +L
Sbjct: 97 PIKT---EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL------------- 140
Query: 518 EQDERKRLENLINSGSVPDDTKAV-GLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPP 576
R+ L L + +V + G+ SG K + + L
Sbjct: 141 ----RQALLELRPAKNV-----LIDGVLGSG---------K-----TWVALD---VCLSY 174
Query: 577 PPPPRRSSDLPYLTCPRPLVRCRQP-----PRSKLKSRIPRPYFPNVSVQVNGTIWTELD 631
+ + +L L C P KL +I + N +
Sbjct: 175 KVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 632 ESKLYASMELEVVDKLFCAYQKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTIL 691
+++L +L + L L + +K + + C IL
Sbjct: 231 QAEL---------RRLLKSKPYE--------NCLLVLLNVQNAKAWNAFNLS----CKIL 269
Query: 692 LSKLKMT-DEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLE---EHSTETLAR- 746
L+ T ++++ LS + + LD + TP E +LL + + L R
Sbjct: 270 LT----TRFKQVT-DFLSAATTTHISLD--HHSMTLTP-DEVKSLLLKYLDCRPQDLPRE 321
Query: 747 -ADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTRSRRLRKLLE 805
+S I + +R + W K+ +++E+S V RK+ +
Sbjct: 322 VLTTNPRRLSIIA---ESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 806 LVLALGNYMNKGARGNASGFRLTSL-NKLVDTKSSSSRGVTLLHYLVELAEKRFKEVLKL 864
L++ A + L+ + ++ + V LH L EK+ KE
Sbjct: 377 R-LSV---FPPSA--HIPTILLSLIWFDVIKSDVMVV--VNKLHKY-SLVEKQPKE---- 423
Query: 865 EEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREI--EFQRVQPLVPGDRFLPVMKEFL 922
S +S+ + ++ N + R I + + D P + ++
Sbjct: 424 ----------STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 923 TS------ATCRLSEIEDLF----QDMKTRF-DRAVRLFGEDNSSIQPEDFFVIFDTFLT 971
S E LF D RF ++ +R ++ I +T L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGS-----ILNT-LQ 525
Query: 972 TLNEAK---LDNENMKRRREEE 990
L K DN+ R
Sbjct: 526 QLKFYKPYICDNDPKYERLVNA 547
Score = 50.2 bits (119), Expect = 4e-06
Identities = 40/275 (14%), Positives = 87/275 (31%), Gaps = 79/275 (28%)
Query: 752 YEISKIPHYEQRLRCLHYKKRF--HFWISDIEPKIKSVMEASREV----------TRSRR 799
+E + + + + ++ F +F D++ KS++ + E+ + + R
Sbjct: 9 FETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSGTLR 66
Query: 800 LRKLLELVLALGNYMNKGARGNASGFRLTSLNK----LVDTKSSSSRGVTLLHYLVELAE 855
L L +K F L L+ + R +++
Sbjct: 67 LFWTLL---------SKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMM-------T 109
Query: 856 KRFKEVL-KLEEDLCHVKEASK--VSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGD 912
+ + E +L D + +K VS + +LR L E+ + V L+ G
Sbjct: 110 RMYIEQRDRLYND---NQVFAKYNVSRLQP---YLKLRQALLELRPA---KNV--LIDG- 157
Query: 913 RFLPVM----KEFLTSATCRLSEIEDLFQD----MKTRFDRAVRLFGEDNSSIQPEDFFV 964
+ K ++ C +++ + NS PE
Sbjct: 158 -----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---------LKNCNS---PETVLE 200
Query: 965 IFDTFLTTLN---EAKLDN-ENMKRRREEEEKRAR 995
+ L ++ ++ D+ N+K R + R
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.7 bits (157), Expect = 2e-10
Identities = 102/662 (15%), Positives = 183/662 (27%), Gaps = 257/662 (38%)
Query: 493 GHLEAKQKV-AELEDRISELKHRADFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREE 551
G LE V S+L + F + +P+ T+ +E
Sbjct: 14 GSLEHVLLVPTASFFIASQL--QEQFNK-------------ILPEPTEGFAAD-----DE 53
Query: 552 PSSPRKPE--AP-----SSCIPPPPPP---------------------------ASLPPP 577
P++P E SS + P A L
Sbjct: 54 PTTP--AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 578 PPPRRSSDLPYLTC--------PRPLVRCRQPPRSKLKSRIPRPYFPNVSVQVNGTIWTE 629
+ RP + S L F V G
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDK---KSNSAL--------FRAVG---EG----- 152
Query: 630 LDESKLYASMELEVVDKLFCAYQKNGVPADGSVED----LTKLGKISKSKILSVIDGRRA 685
++L A +F G G+ +D L L + + +I
Sbjct: 153 --NAQLVA---------IF-----GG---QGNTDDYFEELRDLYQTYHVLVGDLIK---- 189
Query: 686 QNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAALLEEHSTETLA 745
LS+L T + K L+ + + L+ P+ + L
Sbjct: 190 -FSAETLSELIRTTLDAEKVF-------TQGLN-ILEWLE-NPSNT-------PDKDYLL 232
Query: 746 RADRFLYEISKIP--------HYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREV--- 794
IS P HY + L + ++ +K S+ +
Sbjct: 233 SI-----PIS-CPLIGVIQLAHYVVTAKLLGFTP------GELRSYLKGATGHSQGLVTA 280
Query: 795 -----TRS-----RRLRKLLELVLALGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGV 844
T S +RK + ++ +G R + + TSL + + S
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIG------VRCYEA-YPNTSLPPSI-LEDSLENNE 332
Query: 845 TLLHYLVELAEKRFKEVLK-LEEDLCHVKEASKVSMKELEN------------DMTQLRN 891
+ ++ ++ ++V + + H+ +V + L N + L
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNL 391
Query: 892 NLKEV--------SREIEF-QRVQPLVPGDRFLPVMKEF----LTSATCRLSEIEDLFQD 938
L++ SR I F +R L +RFLPV F L A+ + + +D
Sbjct: 392 TLRKAKAPSGLDQSR-IPFSER--KLKFSNRFLPVASPFHSHLLVPAS------DLINKD 442
Query: 939 MKTRFDRAVRLFGEDNSSIQPEDFFV-IFDTFLTTLNEAKLDNENMKRRREEEEKR-ARQ 996
+ ++N S +D + ++DTF D +++ +R
Sbjct: 443 LV-----------KNNVSFNAKDIQIPVYDTF---------DGSDLRVLSGSISERIVDC 482
Query: 997 --------DAEMKKRTT-----------------DR-KQGAKENGV-VISNGSVKGEFDD 1029
+ + + T R K G GV VI G++ DD
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT---GVRVIVAGTLDINPDD 539
Query: 1030 LI 1031
Sbjct: 540 DY 541
Score = 64.3 bits (156), Expect = 2e-10
Identities = 91/556 (16%), Positives = 156/556 (28%), Gaps = 210/556 (37%)
Query: 283 VLSYGPGQHSLEF--RLHLRYEVIMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESE 340
LS+G +H L L+ + F + E
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQ-----------LQ-----------EQFNKILPEPTEG 47
Query: 341 LARKYETDHIETKSATSMFNILRRKLGHTAAY--PHFLSLLHHCILLPL-EFGCHPQHWL 397
A E T+ ++ + LG+ ++ P + + L L EF
Sbjct: 48 FAADDEP--------TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-------- 91
Query: 398 LLDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKK-------KADELEM 450
+ L+ G D H L LL + + + K A
Sbjct: 92 ------ENCYLE---GNDI-HAL-------AAKLLQENDTTLVKTKELIKNYITARI--- 131
Query: 451 ENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAEL------ 504
++ R K+ S + G+ A+L
Sbjct: 132 ----MAKRPFDKKSN---------------SAL---FRAVGEGN-------AQLVAIFGG 162
Query: 505 ----EDRISELKHR--------ADFEQDERKRLENLINSGSVPDDTKAV---GLSRSGGR 549
+D EL+ D + + L LI + D + V GL+
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT---TLDAEKVFTQGLNILEWL 219
Query: 550 EEPSSPRKPEAP--SSCIPPPPPPASLPPPPPPRRSSDLPYLT-CPRPLVRCRQ---PPR 603
E PS+ P+ S P S P L + +V + P
Sbjct: 220 ENPSN--TPDKDYLLSI------PISCP----------LIGVIQLAHYVVTAKLLGFTP- 260
Query: 604 SKLKSRIPRPYFPNVSVQVNGTI----------WTELDESKLYASMELEVVDKLF----- 648
+L R Y + G + W S + V LF
Sbjct: 261 GEL-----RSYLKGATGHSQGLVTAVAIAETDSWESFFVS---VRKAITV---LFFIGVR 309
Query: 649 C--AYQKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILLSKLKMTDEEI--SK 704
C AY +P +ED + + S +LS+ + + Q + + T+ + K
Sbjct: 310 CYEAYPNTSLPPS-ILEDSLENNEGVPSPMLSISNLTQEQ----VQDYVNKTNSHLPAGK 364
Query: 705 AI-LSM-DSADQL-----PLDMLEQLLKFTPNTEEAALLEEHSTETLARADRFLYEISKI 757
+ +S+ + A L P L L L + + L + S+I
Sbjct: 365 QVEISLVNGAKNLVVSGPPQS-LYGL--------NLTLRKAKAPSGL--------DQSRI 407
Query: 758 PHYEQRLRCLHYKKRF 773
P E++L+ + RF
Sbjct: 408 PFSERKLKFSN---RF 420
Score = 61.6 bits (149), Expect = 1e-09
Identities = 101/530 (19%), Positives = 163/530 (30%), Gaps = 200/530 (37%)
Query: 14 QDDEP---PE-----ITYCM--VDNAGTP--------ALVTFTPT-LPIPPTNELNTMFE 54
DDEP E + Y V+ + L F L N+++ +
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE---GNDIHALAA 106
Query: 55 ELVEELDLTAPNKAAMLSLPDEKKWQIY------CSRKMDQTST----TDAPD------- 97
+L++E D T ++ + Y R D+ S +
Sbjct: 107 KLLQENDTTLVKTKELI--------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 98 ------NPEQYIEQLRN-FKSSP----------------LTEHDDTEIKSRTRILDS--- 131
N + Y E+LR+ +++ L K T+ L+
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 132 LRTA--------LRTQPHSFVLRFIECEGLLTLLEYL---KNLDHYSGQTSLHSSIIGCI 180
L L + P S L I G++ L Y+ K L G+ L S + G
Sbjct: 219 LENPSNTPDKDYLLSIPISCPL--I---GVIQLAHYVVTAKLLGFTPGE--LRSYLKG-- 269
Query: 181 KALMNNSTGRSHVLGYPGAIDIIAQSLS----TENIKTKIAVLEILGAVC--------LI 228
+TG H G A+ IA++ S +++ I VL +G C L
Sbjct: 270 ------ATG--HSQGLVTAV-AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 229 PGGHKKVLDAMSHYQRFCNERSRFQGI------VNDLDKS---TGIYRT--------DVS 271
P + D++ + NE G+ +++L + + +T V
Sbjct: 321 P---SILEDSLEN-----NE-----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 272 IKTALM-SFLNAVLSYGPGQHSLE-FRLHLRYEVIMLGIQPIIDKLRTHENETLDRHLDF 329
I +L+ N V+S GP Q SL L LR +D+ R +E R L F
Sbjct: 368 I--SLVNGAKNLVVS-GPPQ-SLYGLNLTLR----KAKAPSGLDQSRIPFSE---RKLKF 416
Query: 330 ---FEMLR-----HEDESELARKYETDHIETKSATSMFNILRRKLG----HT-------A 370
F L H S L +D I + + + + T
Sbjct: 417 SNRF--LPVASPFH---SHLLVPA-SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 371 AYPHFLSLLHHCILLPLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHIL 420
+ CI+ P W + T T HIL
Sbjct: 471 LSGSISERIVDCII------RLPVKW-------ETTTQFKAT-----HIL 502
Score = 58.1 bits (140), Expect = 2e-08
Identities = 70/505 (13%), Positives = 133/505 (26%), Gaps = 177/505 (35%)
Query: 36 TFTPTLPIPPTNELNTMFEELVEELDLTAPNKAAMLSLPDEKKWQI-YCSRKMDQTSTTD 94
+ L +P + +L E+ + P + DE + + S+
Sbjct: 15 SLEHVLLVPTASFFI--ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 95 APDNPEQYIEQLRN----FKS------------SPLTEHDDTEIKSRTRILDS------- 131
P Q+ + L F++ + L + +DT + ++ +
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 132 LRTALRTQPHSFVLRFIECEGLLTL----------LEYLKNL----DHYSGQ-TSLHSSI 176
+ + +S + R + EG L +Y + L Y L
Sbjct: 133 AKRPFDKKSNSALFRAVG-EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 177 IGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENIKTKIAVLEILGAVC-LIPGGHKKV 235
+ L+ + V + ++I+ + L + L + C LI
Sbjct: 192 AETLSELIRTTLDAEKV--FTQGLNIL-EWLENPSNTPDKDYLLSIPISCPLI------G 242
Query: 236 LDAMSHYQRFCNE--------RSRFQGIVNDLDKSTGIYRTDVSIKTALM--------SF 279
+ ++HY RS +G +TG + + TA+ SF
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKG-------ATGHSQ---GLVTAVAIAETDSWESF 292
Query: 280 LNAVLSYGPGQHSLEF------RLHLRYEVI--------------------MLGI----- 308
+V + R + Y ML I
Sbjct: 293 FVSVRKA------ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 309 ---QPIIDKLRTHENETLDRHL--------DFF------EMLRHEDESELARKYETDHIE 351
Q ++K +H + + + L L +
Sbjct: 347 EQVQDYVNKTNSHLPA--GKQVEISLVNGAKNLVVSGPPQSLYG-----LNL-----TLR 394
Query: 352 TKSATSMFNILR-----RKLGHTAAY-----PHFLSLLHHCILLPLEFGCHP-QHWLLLD 400
A S + R RKL + + P F H LL P + D
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-F-----HSHLL------VPASDLINKD 442
Query: 401 RLAQQLTLQ----------TETGED 415
+ ++ T G D
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSD 467
Score = 57.8 bits (139), Expect = 2e-08
Identities = 97/578 (16%), Positives = 165/578 (28%), Gaps = 223/578 (38%)
Query: 250 SRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQ--HSLEFRLHLRYEVIMLG 307
+F G V+ L + + + + D + L F N L G H+L +L + ++
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE---GNDIHALAAKLLQENDTTLVK 118
Query: 308 IQPIIDKLRT--HENETLDRHLDFFEMLRHEDESELARKYETDHIETKSAT--SMF---- 359
+ +I + R D + S L R + +A ++F
Sbjct: 119 TKELI---KNYITARIMAKRPFD------KKSNSALFR-----AVGEGNAQLVAIFGGQG 164
Query: 360 NILR-----RKLGHTAAYPHFLSLL---HHCILLPL-----------EFGCHPQHWLL-- 398
N R L T Y + L L L G + WL
Sbjct: 165 NTDDYFEELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 399 -----LDRLAQ-----------QL--------TLQTETGEDYDHIL-LKINVKKVVHLLA 433
D L QL L GE ++ + + +V A
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV--TA 280
Query: 434 KEEEIVAAKKKADELEMENVDLSNRLA----KKEQE------LDQKT-QEKEDLDE---- 478
+A + +V + + + E L ++ + +E
Sbjct: 281 V---AIAETDSWESFF-VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 479 ---SLSRI-KDRLEK---ETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLIN- 530
S+S + +++++ +T HL A ++V IS L+N
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-----IS------------------LVNG 373
Query: 531 ------SGSVPDD----------TKAV-GLSRSGGREEPSSPRKPE---------AP--S 562
SG P KA GL +S P S RK + +P S
Sbjct: 374 AKNLVVSGP-PQSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSNRFLPVASPFHS 429
Query: 563 SCIPPPPP--PASLPPPPPPRRSSDL--P-YLT------------CPRPLVRCRQPPRSK 605
+ P L + D+ P Y T +V C
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC------- 482
Query: 606 LKSRIPRPYFPNVSVQVNGTIWTELDESKLYASMELEVVDKLFCAYQKNGVPADGSVEDL 665
I + + V W + K A+ ++D F G P G L
Sbjct: 483 ----I-------IRLPVK---WETTTQFK--AT---HILD--F------G-P--GGASGL 512
Query: 666 TKLGKISKSKILSVIDGRRAQNCTILLSKLKM-TDEEI 702
L ++K DG + I+ L + D++
Sbjct: 513 GVL--THRNK-----DGTGVR--VIVAGTLDINPDDDY 541
Score = 46.2 bits (109), Expect = 7e-05
Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 76/214 (35%)
Query: 86 KMDQTSTTDAPDNPEQYIEQLRNFKSSPLTEHDDTEIKSRTRILDSLRTALRTQPHSFV- 144
M + D E+ +++ N S+ T + + S T+ TQP +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEI-NEHSTSYTFRSEKGLLSATQF---------TQPALTLM 1739
Query: 145 ----LRFIECEGLLTL--------L-EY---------------LKNLDHYSGQTSLHSSI 176
++ +GL+ L EY ++ + Y G T
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE-VVFYRGMTMQV--- 1795
Query: 177 IGCIKALMNNSTGRSHVLGY---PGAIDIIAQSLSTENIKT---KIA-----VLEILGA- 224
A+ + GRS+ PG + A S S E ++ ++ ++EI
Sbjct: 1796 -----AVPRDELGRSNYGMIAINPGRV---AASFSQEALQYVVERVGKRTGWLVEI--VN 1845
Query: 225 --------VCLIPGGHKKVLDAMSHYQRFCNERS 250
V G + LD +++ F +
Sbjct: 1846 YNVENQQYVA---AGDLRALDTVTNVLNFIKLQK 1876
Score = 37.3 bits (86), Expect = 0.035
Identities = 59/341 (17%), Positives = 105/341 (30%), Gaps = 106/341 (31%)
Query: 751 LYEISKIPHYEQRLRCL------HYKKRFHFWISDI---EPKIKSVMEASREVTRSRRLR 801
LY+ SK + + H+K + F I DI P ++ + +R+R
Sbjct: 1635 LYKTSKA------AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE---KGKRIR 1685
Query: 802 KLLELVLALGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEV 861
+ NY + +VD K + EK FKE+
Sbjct: 1686 E---------NYS-----------AMI-FETIVDGKLKT--------------EKIFKEI 1710
Query: 862 LKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQP--LVPGDRF----- 914
+ + K + + TQ L + + F+ ++ L+P D
Sbjct: 1711 NEHSTSYTF--RSEKGLLSATQF--TQPA--LTLMEKAA-FEDLKSKGLIPADATFAGHS 1763
Query: 915 LPVMKEFLTSATCRLSE---IEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLT 971
L E+ +A L++ IE L V G P D + +
Sbjct: 1764 L---GEY--AALASLADVMSIESLV--------EVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 972 TLNEAKLDNENMKRRREEEEKRARQDAEMKKRTTDRKQGAKEN--G--VVISNGSVKGEF 1027
+N + + +E + + + KRT + N V + G+
Sbjct: 1811 AINPGR-----VAASFSQEALQYVVE-RVGKRTGWLVEIVNYNVENQQYVAA-----GD- 1858
Query: 1028 DDLISALRT-GDVFGEDSIAKIKRSRRSRHSPSSAREDTRE 1067
+ AL T +V + KI + S S E+
Sbjct: 1859 ---LRALDTVTNVLNFIKLQKID-IIELQKSLSL--EEVEG 1893
Score = 36.2 bits (83), Expect = 0.068
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 50/169 (29%)
Query: 412 TGEDYDHILLKI---N-VKKVVHL-LAKEEEIVAAKKKADELEMEN-VDLSNRLAKKEQE 465
+ Y +L I N V +H K + I ++ + E VD + K +E
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRI---RENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 466 LDQKTQ------EKEDLDE-----------SLSRIKDRLEKET--------AGH------ 494
+++ + EK L + +D L+ + AGH
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED-LKSKGLIPADATFAGHSLGEYA 1768
Query: 495 -LEAKQKVAELEDRISELKHRADFEQDERKRLENL--------INSGSV 534
L + V +E + + +R Q R E IN G V
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 57.2 bits (138), Expect = 3e-08
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 399 LDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADE-------LEME 451
L+ LT E+ L K+ K + E + +K E LE E
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Query: 452 NVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISEL 511
+ DL ++A+ + ++ + + +E L RLE ET+ A +K+ ELE IS+L
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Query: 512 KHRADFEQDERKRLE 526
+ + E+ R + E
Sbjct: 1129 QEDLESEKAARNKAE 1143
Score = 56.0 bits (135), Expect = 7e-08
Identities = 24/101 (23%), Positives = 47/101 (46%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
+L E++ K+ LE DL+ LA++E++ T+ K + +S ++ RL+KE
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
E ++ +LE S+L + Q + L+ +
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Score = 51.0 bits (122), Expect = 2e-06
Identities = 20/101 (19%), Positives = 48/101 (47%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
+ +EE + + +++ + +DL +L ++E + EK D + +++D +
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
+ + ++ LE+R+S+L E+++ K L L N
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Score = 50.2 bits (120), Expect = 4e-06
Identities = 19/97 (19%), Positives = 45/97 (46%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
EE V K ELE ++ R+ ++E+ Q EK+ + + + ++++LE+E
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
A + + + + +I +++ +D+ +L
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Score = 49.1 bits (117), Expect = 9e-06
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKED--------------LDESL 480
E E ++ EL+ + +L +LAKKE+EL ED L+ +
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI 1125
Query: 481 SRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
S +++ LE E A +A+++ +L + + LK + D + L S
Sbjct: 1126 SDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Score = 47.5 bits (113), Expect = 2e-05
Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 399 LDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNR 458
L+ + ++ + E E+ L K +L EE++ + +L++E V +
Sbjct: 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Query: 459 LAKKEQELDQK-------TQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISEL 511
+ K E ++ T+E++ L+E +S + L +E + + E ISEL
Sbjct: 985 IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Query: 512 KHRADFEQDERKRLENL 528
+ R E+ R+ LE +
Sbjct: 1045 EVRLKKEEKSRQELEKI 1061
Score = 47.5 bits (113), Expect = 3e-05
Identities = 19/108 (17%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 421 LKINVKKVVHLLAK-EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDES 479
L+ +++ K + E V A K ++E + + + ++ K +E + DL +
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Query: 480 LSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
L+ +++ + T + + ++ELE R+ + + + +++LE
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Score = 46.8 bits (111), Expect = 4e-05
Identities = 14/99 (14%), Positives = 45/99 (45%)
Query: 433 AKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETA 492
+ E +++ +LE + + K + E + + +++ + ++D+ K T
Sbjct: 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Query: 493 GHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
+++V++L ++E + +A + + E++I+
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Score = 46.4 bits (110), Expect = 5e-05
Identities = 21/102 (20%), Positives = 45/102 (44%)
Query: 430 HLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEK 489
+L +EE+ K ++ E +L RL K+E+ + + K L+ S + +++ +
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Query: 490 ETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
A E K ++A+ E+ + R + E ++ I
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Score = 46.0 bits (109), Expect = 8e-05
Identities = 28/142 (19%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 395 HWLLLDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEE-EIVAAKKKADELEMENV 453
HW + L T ++ + +++ K E E+ ++K +L E
Sbjct: 836 HWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN 895
Query: 454 DLSNRL-------AKKEQELDQKTQEKEDLDESLSRIKDRLEKET--AGHLEAKQKVAEL 504
L +L A+ E+ + +K++L+E L ++ R+E+E + L+A++K ++
Sbjct: 896 LLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK--KM 953
Query: 505 EDRISELKHRADFEQDERKRLE 526
+ ++ +L+ + + E+ R++L+
Sbjct: 954 QQQMLDLEEQLEEEEAARQKLQ 975
Score = 42.5 bits (100), Expect = 0.001
Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
E++I+ + + ++L E L R++ L E+E+ ++L+++K++ E +
Sbjct: 989 EDDILIMEDQNNKLTKERKLLEERVSDLTTNL----AEEEEKAKNLTKLKNKHESMIS-- 1042
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
E + ++ + E EL+ + E L I
Sbjct: 1043 -ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Score = 41.7 bits (98), Expect = 0.002
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 401 RLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLA 460
L ++L +TE + + + +++ KK EE + + + +E E + L
Sbjct: 896 LLQEKLQAETELYAEAEEMRVRLAAKKQEL----EEILHEMEARIEEEEERSQQLQAEKK 951
Query: 461 KKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQD 520
K +Q++ +E L+E + +L+ E + A K+ ++ED I ++ + +
Sbjct: 952 KMQQQMLD---LEEQLEE-EEAARQKLQLE---KVTADGKIKKMEDDILIMEDQNNKLTK 1004
Query: 521 ERKRLENLIN 530
ERK LE ++
Sbjct: 1005 ERKLLEERVS 1014
Score = 39.8 bits (93), Expect = 0.006
Identities = 17/76 (22%), Positives = 28/76 (36%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
+ A KK ELE DL L ++ ++ ++K DL E L +K LE
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167
Query: 495 LEAKQKVAELEDRISE 510
++ +
Sbjct: 1168 ATQQELRGSDYKDDDD 1183
Score = 39.4 bits (92), Expect = 0.008
Identities = 22/107 (20%), Positives = 52/107 (48%)
Query: 421 LKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESL 480
L ++ + AK+EE+ K++ + E E +L + + +E + ++ + E
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 481 SRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
+ ++ + A E ++ + E+E RI E + R+ Q E+K+++
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 54.0 bits (130), Expect = 3e-07
Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
L + + KK LE + + L ++ ++ +E ++ +L+ + S ++L +
Sbjct: 909 LKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
Query: 491 TAGHL-------EAKQKVAELEDRISELKHRADFEQDERKRLENLIN 530
A +V L++ I++L+ Q E+K +E +
Sbjct: 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015
Score = 50.5 bits (121), Expect = 3e-06
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 426 KKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKD 485
V L EEE A + L+ E L L + + E + + ++
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 486 RLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
L+++ K + EL RI + +++ E
Sbjct: 1027 ELKEQNT---LLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065
Score = 48.2 bits (115), Expect = 1e-05
Identities = 14/101 (13%), Positives = 41/101 (40%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
+ + +E + +K + LE+ + +L + L +E ++ + +++ + K
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
+ + + +E+ + KH + E K L+ +
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037
Score = 46.3 bits (110), Expect = 5e-05
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 426 KKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKD 485
+L+ +EEI +K+ + + E + K + E +Q E ++ + L K+
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040
Query: 486 RLEKETAGHLEAKQKVAELEDRISELKHRADFE-QDERKRLE 526
L + +AK+ +E ++ E + + + DER R +
Sbjct: 1041 ELNRRIHD--QAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 37.0 bits (86), Expect = 0.037
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 421 LKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESL 480
++ + LL + E + + R + + L
Sbjct: 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897
Query: 481 SRIKDRLE----KETAGHLEAKQKV-AELEDRISELKHRADFEQDERKRLENLINS 531
R+ + E K A +E +K+ LE++I +L+ + D + E K L +N+
Sbjct: 898 RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Score = 29.7 bits (67), Expect = 7.7
Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 20/159 (12%)
Query: 853 LAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGD 912
+A++ K+ LK+E E K LEN + QL+ + E ++E + +
Sbjct: 901 MAKRELKK-LKIEARSV---ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK------ 950
Query: 913 RFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTT 972
M + + ++ + ++ + A N + ++ L
Sbjct: 951 -----MNNLEITYSTETEKLRSDVERLRMSEEEAKNA---TNRVLSLQEEIAKLRKELHQ 1002
Query: 973 LNEAK--LDNENMKRRREEEEKRARQDAEMKKRTTDRKQ 1009
K ++ K + E E+ + + T++++
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 44.1 bits (104), Expect = 2e-05
Identities = 15/97 (15%), Positives = 46/97 (47%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
+ + +EE K+ ++ E +L ++ QE + + + ++L+ ++R ++
Sbjct: 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
++ + KV E+ R+ + + ++++LE+
Sbjct: 75 IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111
Score = 31.0 bits (70), Expect = 0.85
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
L EE K +LE + +++ RL +E+ + T +K L++ S +K ++
Sbjct: 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123
Query: 491 TA 492
Sbjct: 124 EL 125
Score = 28.7 bits (64), Expect = 5.4
Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 400 DRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRL 459
+ L Q+ + + D + ++ K+ E ++ K+ ++ E N +L+ +
Sbjct: 51 NDLQLQVQAEQDNLADAEERCDQLIKNKI----QLEAKVKEMNKRLEDEEEMNAELTAKK 106
Query: 460 AKKEQELDQKTQEKEDLDESLSR 482
K E E + ++ +DL+ +L++
Sbjct: 107 RKLEDECSELKRDIDDLELTLAK 129
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 46.2 bits (109), Expect = 3e-05
Identities = 19/97 (19%), Positives = 45/97 (46%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
E+E+V+ +KK E E S L +++L+ ++ D + ++ + R++
Sbjct: 36 SKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF 95
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
A++++A ++ E + AD + K +E+
Sbjct: 96 EEELDRAQERLATALQKLEEAEKAADESERGMKVIES 132
Score = 42.3 bits (99), Expect = 5e-04
Identities = 20/92 (21%), Positives = 40/92 (43%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
E + AA+ ++ +LE E V L +L E ELD+ ++ +D E L + + A
Sbjct: 26 EADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADV 85
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLE 526
+++ E+ + + R + + E
Sbjct: 86 ASLNRRIQLFEEELDRAQERLATALQKLEEAE 117
Score = 42.3 bits (99), Expect = 6e-04
Identities = 21/98 (21%), Positives = 49/98 (50%)
Query: 434 KEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAG 493
EE ++ K ELE E ++N L E + ++ +Q+++ +E + + D+L++
Sbjct: 179 AEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETR 238
Query: 494 HLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
A++ V +LE I +L+ ++ + K + ++
Sbjct: 239 AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276
Score = 41.6 bits (97), Expect = 0.001
Identities = 17/97 (17%), Positives = 41/97 (42%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
L A E+E+ + + + + + E ++ + + +E L R ++RL
Sbjct: 50 LKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATA 109
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
EA++ E E + ++ RA ++++ + E
Sbjct: 110 LQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Score = 41.2 bits (96), Expect = 0.001
Identities = 18/97 (18%), Positives = 41/97 (42%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
+ + + A +ADE E + +R + E EL ++ + ++ L + + L+
Sbjct: 8 MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA 67
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
A++K + E ++ L R ++E R +
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQE 104
Score = 39.6 bits (92), Expect = 0.004
Identities = 19/102 (18%), Positives = 39/102 (38%)
Query: 430 HLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEK 489
L +E + A +K +E E + + E + ++ E + L K E
Sbjct: 98 ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 157
Query: 490 ETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
+ E +K+ +E + + RA+ + + LE I +
Sbjct: 158 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKT 199
Score = 37.7 bits (87), Expect = 0.016
Identities = 13/91 (14%), Positives = 39/91 (42%)
Query: 440 AAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQ 499
A KKK L+++ + +R + E + + L++ L ++ +L+ + +
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62
Query: 500 KVAELEDRISELKHRADFEQDERKRLENLIN 530
+ + ++++ + +A + + L I
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQ 93
Score = 37.3 bits (86), Expect = 0.017
Identities = 12/94 (12%), Positives = 39/94 (41%)
Query: 433 AKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETA 492
+ I +++ D + +L + E+ D+ + + ++ + ++++E +
Sbjct: 87 SLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Query: 493 GHLEAKQKVAELEDRISELKHRADFEQDERKRLE 526
EAK + + + E+ + + + +R E
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Score = 35.8 bits (82), Expect = 0.052
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 430 HLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEK 489
EEEI LE + S + K E+E+ + + ++ + + + K
Sbjct: 189 KCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTK 248
Query: 490 ETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
++ + +LED + K + +E N + S
Sbjct: 249 -------LEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283
Score = 35.4 bits (81), Expect = 0.090
Identities = 16/96 (16%), Positives = 36/96 (37%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
L E+ +++ +E ++ +E +L + ED D + +L
Sbjct: 113 LEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII 172
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLE 526
+ A+++ E + +EL+ + K LE
Sbjct: 173 ESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLE 208
Score = 35.0 bits (80), Expect = 0.11
Identities = 13/93 (13%), Positives = 39/93 (41%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
E ++ + ++ E E RLA Q+L++ + ++ + + I+ R +K+
Sbjct: 82 EADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM 141
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
+ ++ E + + + + + +E+
Sbjct: 142 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 174
Score = 32.3 bits (73), Expect = 0.70
Identities = 11/94 (11%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
E ++K + E++ + + +++ ++ ++ ++ L R ++R E
Sbjct: 131 ESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKC 190
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLENL 528
E ++ E++ + LK + ++ +
Sbjct: 191 AELEE---EIKTVTNNLKSLEAQAEKYSQKEDKY 221
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 43.4 bits (102), Expect = 8e-05
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 401 RLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLA 460
R+ Q E H+ ++ K L EE ++ K+ ELE E ++N L
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKK-LLERAEERAELSEGKSAELEEELKTVTNNLK 59
Query: 461 KKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQD 520
E + ++ +Q+++ +E + + D+L++ A++ V +LE I +L+ ++
Sbjct: 60 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119
Query: 521 ERKRLEN 527
+ K +
Sbjct: 120 KYKAISE 126
Score = 37.3 bits (86), Expect = 0.007
Identities = 18/78 (23%), Positives = 28/78 (35%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
EEEI K E E + K E+ +D E I + +++
Sbjct: 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV 135
Query: 495 LEAKQKVAELEDRISELK 512
E K LE+ ++ LK
Sbjct: 136 EELLSKNYHLENEVARLK 153
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 43.2 bits (101), Expect = 1e-04
Identities = 15/97 (15%), Positives = 37/97 (38%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
L + + V +K E+ L + + ++ K D+ +++ LE E
Sbjct: 22 LRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE 81
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLEN 527
+ + +L+ RI+ L+ + +++E
Sbjct: 82 RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEG 118
Score = 33.9 bits (77), Expect = 0.13
Identities = 19/140 (13%), Positives = 47/140 (33%), Gaps = 18/140 (12%)
Query: 399 LDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNR 458
L+ L +++T L K + + + E +++ LE
Sbjct: 15 LEEANDLLRTESDTAVR----LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKD 70
Query: 459 LAKKEQELDQKTQEK--------------EDLDESLSRIKDRLEKETAGHLEAKQKVAEL 504
+ + L+ + +++ L E + +K LEK EA+ +
Sbjct: 71 YYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130
Query: 505 EDRISELKHRADFEQDERKR 524
E + L+ +++ ++
Sbjct: 131 EKEKNNLEIDLNYKLKSLQQ 150
Score = 30.9 bits (69), Expect = 1.3
Identities = 10/97 (10%), Positives = 34/97 (35%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
E++ +K+ +E S+ + + + ++ L+ +++R
Sbjct: 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSK 64
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
+ + +L+ + + + + L+ I S
Sbjct: 65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITS 101
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.1 bits (93), Expect = 0.001
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 432 LAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKET 491
L +E E + ++ ++ +D +++ EQE + + K+DL+E R +++EK
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASK--VMEQEW--REKAKKDLEEWNQRQSEQVEKNK 135
Query: 492 AGHLEA-KQKVAELEDRI 508
+ A K + + I
Sbjct: 136 INNRIADKAFYQQPDADI 153
Score = 39.8 bits (92), Expect = 0.002
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 981 ENMKRRREEEEKR-ARQDAEMKKRTTDRKQGAKEN 1014
E++++ REE+ KR DA K + ++ AK++
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD 119
Score = 37.1 bits (85), Expect = 0.015
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 465 ELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKR 524
+ D+ TQE E + + + RL++ L+A KV E E R K ++ Q + ++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQE-----LDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 525 LENLINS 531
+E +
Sbjct: 131 VEKNKIN 137
Score = 35.1 bits (80), Expect = 0.057
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 439 VAAKKKADELEMENVDLSNRLAKKEQ--ELDQK-TQEKEDLDESLSRIKDRLEKETAGHL 495
+A + + E E++ R ++EQ L + K E + K LE+
Sbjct: 74 IAQADRLTQ-EPESI----RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 496 EAKQKVAELEDRISELKHRADFEQD 520
E +K +RI++ + D
Sbjct: 129 EQVEKNKI-NNRIADKAFYQQPDAD 152
Score = 31.3 bits (70), Expect = 1.3
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 976 AKLDNENMKRRREEEEKRARQD-AEMKKRTTDRKQGAKENGVVISNGSVKGEF-----DD 1029
+LD K +E ++A++D E +R +++ + K N N F D
Sbjct: 99 QELDAA-SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN-----NRIADKAFYQQPDAD 152
Query: 1030 LI 1031
+I
Sbjct: 153 II 154
Score = 29.0 bits (64), Expect = 6.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 975 EAKLDNENMKRRREEE-EK-----RARQDAEMKKRTTD 1006
+AK D E +R+ E+ EK R A ++ D
Sbjct: 115 KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 38.3 bits (89), Expect = 0.001
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 425 VKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIK 484
+KK + +L ++E A +A++ E + R + E ++ Q ++ ++S ++
Sbjct: 7 IKKKMQMLKLDKE--NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVL 64
Query: 485 DRLEKETAGHLEAKQKVAELEDRISELKHR 514
+ L K L A++ A+ E ++ L R
Sbjct: 65 EELHKSEDSLLFAEENAAKAESEVASLNRR 94
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 40.5 bits (94), Expect = 0.002
Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 420 LLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDES 479
+L K+ L+ I+ + ++ + ++ Q ++
Sbjct: 114 ILCPKAKRTSRFLSG---IINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMK 170
Query: 480 LSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERK 523
L R++ ++++T + + VA+L ++S+++ + E K
Sbjct: 171 LERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEYECEPGMVK 214
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 36.4 bits (84), Expect = 0.007
Identities = 15/90 (16%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 425 VKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIK 484
+KK + +L ++E A +A++ E + +R + E+E ++ + ++ + +
Sbjct: 7 IKKKMQMLKLDKE--NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64
Query: 485 DRLEKETAGHLEAKQKVAELEDRISELKHR 514
+ +++ +A++K + E ++ L R
Sbjct: 65 ESVKEAQEKLEQAEKKATDAEAEVASLNRR 94
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 38.2 bits (89), Expect = 0.008
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 432 LAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKET 491
+ + E+ V + DE E E + E+E E+ +E+ + E
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60
Query: 492 AGHLEAK-----QKVAELEDRISELKHRADFEQDERKRLE 526
+A+ K++E+E R L+ ADFE + R+R
Sbjct: 61 LAAAKAQIAELEAKLSEMEHRY--LRLYADFE-NFRRRTR 97
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding,
cytoplasm, acetylation, cytoskeleton, actin-binding;
1.1A {Mus musculus}
Length = 26
Score = 33.9 bits (77), Expect = 0.010
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 565 IPPPPP---PASLPPPPP 579
IPPPPP AS+PPPPP
Sbjct: 1 IPPPPPLPGVASIPPPPP 18
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo
sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Length = 121
Score = 35.6 bits (81), Expect = 0.020
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 433 AKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETA 492
A E + E L L + ++ + + ++ + L+ E A
Sbjct: 8 ANSEAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA 67
Query: 493 GHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINSGSV 534
+ KV ELE I+ L H+ E +RL SV
Sbjct: 68 QGQK---KVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 35.2 bits (80), Expect = 0.029
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 551 EPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRP 594
PS+P P C PPP PPPP P PY+
Sbjct: 94 SPSAPAAPVPTPICPTTTPPP---PPPPSPEAHVPPPYVEPTTT 134
Score = 32.2 bits (72), Expect = 0.40
Identities = 11/45 (24%), Positives = 12/45 (26%)
Query: 557 KPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQP 601
K + S P P P PP P P P V
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
Score = 30.6 bits (68), Expect = 1.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLP 587
+ SP P AP P P + PPPPPP + +P
Sbjct: 90 KNQVSPSAPAAPVP--TPICPTTTPPPPPPPSPEAHVP 125
Score = 30.6 bits (68), Expect = 1.1
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 14/58 (24%)
Query: 565 IPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPRPYFPNVSVQV 622
+ P P A +P P P + PP ++ +P PY + Q
Sbjct: 93 VSPSAPAAPVPTPICPTTTPP--------------PPPPPSPEAHVPPPYVEPTTTQC 136
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 36.5 bits (84), Expect = 0.029
Identities = 12/63 (19%), Positives = 19/63 (30%)
Query: 555 PRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPRPY 614
+ P+ P P PP R S L L + + + K + P+
Sbjct: 10 YGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKT 69
Query: 615 FPN 617
P
Sbjct: 70 PPP 72
Score = 31.9 bits (72), Expect = 0.98
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 555 PRKPEAPSSCIPPPPPPASLPPPPPPRRSS--DLPYLTCPRPLVRCRQPPRSKLKSRIPR 612
P + P P PP P ++ L + ++P ++
Sbjct: 18 PVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKT 77
Query: 613 P 613
Sbjct: 78 Q 78
Score = 29.2 bits (65), Expect = 6.7
Identities = 7/65 (10%), Positives = 17/65 (26%)
Query: 549 REEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKS 608
R P+ ++ PP + L + R ++ P+
Sbjct: 13 RWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPP 72
Query: 609 RIPRP 613
+ +
Sbjct: 73 KPKKT 77
Score = 29.2 bits (65), Expect = 7.2
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 14/78 (17%)
Query: 549 REEPSSPRKPEAPSSCIPPPPPPAS-------------LPPPPPPRRSSDLPYLTCPRPL 595
R P P+ P S L P +R+ P T P
Sbjct: 15 RPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKP 74
Query: 596 VRCRQPPRSKLKSRIPRP 613
+ ++P + K + +P
Sbjct: 75 KKTQKPKKPTQKKK-SKP 91
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense,
immune system, GPI anchor; 1.60A {Mus musculus}
Length = 99
Score = 34.5 bits (78), Expect = 0.029
Identities = 14/83 (16%), Positives = 39/83 (46%)
Query: 446 DELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELE 505
E L +L + + L Q + + ++ +++ LEK+ + LE + ++ ELE
Sbjct: 14 AECRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELE 73
Query: 506 DRISELKHRADFEQDERKRLENL 528
+ +++L + + +++ +
Sbjct: 74 NEVTKLNQELENLRIQKETSSTV 96
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 36.6 bits (84), Expect = 0.029
Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 426 KKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKD 485
K+++ + ++EI + + E + N K + + +EK L +S+ +
Sbjct: 8 KQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQ 67
Query: 486 RLEKETAGHLEAKQKVAELEDRISELKHRADFEQ 519
L+ + K+A ++ ++SE+K +
Sbjct: 68 TLQ-------DTNAKIASIQKKMSEIKSERELRS 94
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication
inhibitor, phosphoprotein, UBL conjugation, DNA-binding,
polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A*
Length = 546
Score = 36.6 bits (83), Expect = 0.041
Identities = 66/523 (12%), Positives = 144/523 (27%), Gaps = 37/523 (7%)
Query: 548 GREEPSSPRKPEAPSSCIPPPPP-PASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKL 606
R P PR +C P P PA P S + R P R +L
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70
Query: 607 KSRIPRPYFPNVSVQVNGTIWTELDESKLYASMELEVVDKLFCAYQKNGVPADGSVEDLT 666
+ + P+ + + + +
Sbjct: 71 RLSVDEVSSPSTPEAPDIPACPSPGQKIK---------------------KSTPAAGQPP 109
Query: 667 KLGKISKSKILSVIDGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKF 726
L +S + + + + A+ P + +
Sbjct: 110 HLTSAQDQDTISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCG---EK 166
Query: 727 TPNTEEAALLEEHSTETLARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKS 786
P + L + L ++ + + LH + + + ++ ++
Sbjct: 167 APAYQRFHALAQPGLPGLVLPYKYQVLAEMFRSMDTIVGMLHNRSETPTF-AKVQRGVQD 225
Query: 787 VMEASREVTRSRRLRKLLELVLALGNYMNKGARGNAS---GFRLTSLNKLVDTKSSSSRG 843
+M E +++ + + + + ++LT + L++ ++ +
Sbjct: 226 MMRRRFEERNVGQIKTVYPASYRFRQERSVPTFKDGTRRSDYQLT-IEPLLEQEADGAAP 284
Query: 844 VTLLHYLVELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQ 903
L++ + F + L + HVKE K + L M + L
Sbjct: 285 QLTASRLLQRRQI-FSQKL-----VEHVKEHHKAFLASLSPAMVVPEDQLTRWHPRFNVD 338
Query: 904 RVQPLVPGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFF 963
V + P P E LT+A L+ +L + + L SS
Sbjct: 339 EVPDIEPAALPQPPATEKLTTAQEVLARARNLISPRMEKALSQLALRSAAPSSPGSPR-P 397
Query: 964 VIFDTFLTTLNEAKLDNENMKRRREEEEKRARQDAEMKKRTTDRKQGAKENGVVISNGSV 1023
+ T T A + E RA++ + + T + + + +
Sbjct: 398 ALPATPPATPPAASPSALKGVSQDLLERIRAKEAQKQLAQMTRCPEQEQRLQRLERLPEL 457
Query: 1024 KGEFDDLISALRTGDVFGEDSIAKIKRSRRSRHSPSSAREDTR 1066
+ + R + E + A++ S + SP +
Sbjct: 458 ARVLRSVFVSERKPALSMEVACARMVGSCCTIMSPGEMEKHLL 500
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 33.7 bits (77), Expect = 0.047
Identities = 15/94 (15%), Positives = 38/94 (40%)
Query: 433 AKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETA 492
+ +++ EL +E L L E+ + E + R+ +
Sbjct: 1 GPGSDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR 60
Query: 493 GHLEAKQKVAELEDRISELKHRADFEQDERKRLE 526
+ E K++ EL+D + ++++ + Q + +L+
Sbjct: 61 EYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 35.8 bits (82), Expect = 0.048
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 547 GGREEPSSPRKPEAPSSCIPPPP-PPASLPPPPPPRRSSDLPYLTCPRPLVR--CRQPPR 603
GR ++ S P PP PPPP R + P + P P +R P
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Query: 604 SKLKSRIPRPYFP 616
P P
Sbjct: 205 IPPGRGTPMGMPP 217
Score = 32.7 bits (74), Expect = 0.46
Identities = 9/58 (15%), Positives = 12/58 (20%), Gaps = 4/58 (6%)
Query: 545 RSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPP 602
R G + AS+ P P P + PP
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGG----PPPPMGRGAPP 185
Score = 31.2 bits (70), Expect = 1.6
Identities = 15/99 (15%), Positives = 23/99 (23%)
Query: 518 EQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPP 577
+D L + P +A G G P +P P + P P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 578 PPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPRPYFP 616
++ P R + R P
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP 185
Score = 30.8 bits (69), Expect = 2.1
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 545 RSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRR 582
G P P P P PP + PPPP R
Sbjct: 191 PPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMR 228
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 36.0 bits (82), Expect = 0.059
Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 27/202 (13%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
I + + + D + + + + + D + +I + L
Sbjct: 66 TSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIE-- 123
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLENLI-----------------------NS 531
++KV E RI+ L+ + + KRLE I
Sbjct: 124 -ILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYK 182
Query: 532 GSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTC 591
+ + ++ R+ P + + P P S P + L
Sbjct: 183 NQQKQLEQVIAINLLPSRDIQYLPILKMSTIT-GPVPREFKSQLQEAPLEWKALLEMQQT 241
Query: 592 PRPLVRCRQPPRSKLKSRIPRP 613
L ++ S
Sbjct: 242 KMVLETFGGDGHARGDSVSQGT 263
Score = 29.8 bits (66), Expect = 5.7
Identities = 8/35 (22%), Positives = 8/35 (22%), Gaps = 2/35 (5%)
Query: 548 GREEPSSP--RKPEAPSSCIPPPPPPASLPPPPPP 580
GR EP S P P S
Sbjct: 336 GRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFR 370
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR LMU
LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E*
2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 34.6 bits (78), Expect = 0.061
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 545 RSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPP--PRRSS 584
R+ P+S ++P++ P A+ P PPP P+R S
Sbjct: 44 RAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPIGPKRGS 85
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 34.1 bits (77), Expect = 0.083
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 434 KEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESL-SRIKDRLEKETA 492
+ E+ + L + + K E+E D+ +E EDL SL + +
Sbjct: 37 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARM 96
Query: 493 GHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
+ L +++ E D + K L+ +++S
Sbjct: 97 EKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVMHS 135
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 34.1 bits (78), Expect = 0.085
Identities = 8/74 (10%), Positives = 13/74 (17%)
Query: 531 SGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLT 590
S + + R + +P P P P
Sbjct: 3 SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYG 62
Query: 591 CPRPLVRCRQPPRS 604
V + S
Sbjct: 63 SAGTSVTLQLDDGS 76
Score = 29.9 bits (67), Expect = 2.6
Identities = 4/57 (7%), Positives = 6/57 (10%)
Query: 548 GREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRS 604
G + P P +P
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQ 58
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 33.9 bits (77), Expect = 0.091
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKE-------DLDESLSRIKDRL 487
E ++ AK A++ + + +++ +L E +L++ + E +L+E L + + L
Sbjct: 58 EIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117
Query: 488 EKETAGHLEAKQKVAELEDRISELKHR 514
+ E K LE+ ++ LK
Sbjct: 118 KSLEDKVEELLSKNYHLENEVARLKKL 144
Score = 30.8 bits (69), Expect = 0.98
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 399 LDRLAQQLTLQTETGEDYDHILLKINVKKVV---HLLAKEEEIVAAKKKADELEMENVDL 455
++ QL ED D ++ K V+ L EE ++ K ELE E +
Sbjct: 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTV 113
Query: 456 SNRLAKKEQELDQKTQEKEDLDESLSRIKDRLE 488
+N L E ++++ + L+ ++R+K +
Sbjct: 114 TNNLKSLEDKVEELLSKNYHLENEVARLKKLVG 146
Score = 29.3 bits (65), Expect = 4.0
Identities = 14/77 (18%), Positives = 34/77 (44%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
E + + +A + E + +L + + + ++ E++ L I+ LE+
Sbjct: 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 96
Query: 495 LEAKQKVAELEDRISEL 511
++ K AELE+ + +
Sbjct: 97 ELSEGKCAELEEELKTV 113
Score = 28.1 bits (62), Expect = 9.4
Identities = 12/95 (12%), Positives = 42/95 (44%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
E ++K + E++ + + +++ ++ ++ ++ L R ++R E
Sbjct: 44 ESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKC 103
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLENLI 529
E ++++ + + + L+ + + + LEN +
Sbjct: 104 AELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 35.6 bits (81), Expect = 0.098
Identities = 11/63 (17%), Positives = 19/63 (30%)
Query: 522 RKRLENLINSGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPR 581
R+RL + ++P+ PS+ P S ++ P P
Sbjct: 6 RRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPA 65
Query: 582 RSS 584
S
Sbjct: 66 APS 68
Score = 32.1 bits (72), Expect = 1.2
Identities = 10/65 (15%), Positives = 13/65 (20%), Gaps = 5/65 (7%)
Query: 547 GGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKL 606
G +P P P R S+ P + P P S
Sbjct: 20 NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAP-----SPGSSGG 74
Query: 607 KSRIP 611
Sbjct: 75 GGFFS 79
Score = 31.0 bits (69), Expect = 2.3
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 4/74 (5%)
Query: 543 LSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPP 602
LS S + + PPPPP A+ P P ++ P
Sbjct: 9 LSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAE----RASTAAPVASP 64
Query: 603 RSKLKSRIPRPYFP 616
+ F
Sbjct: 65 AAPSPGSSGGGGFF 78
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 34.6 bits (78), Expect = 0.098
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 548 GREEPSSPRKPEAPSS-CIPPPPPPASLPPPPPPRRSSDLPYLTCPRP 594
E P S + S + PP +L PP R S R
Sbjct: 154 TWEPPVSSDDEASSQSKPLATQPPVLALSNAPPRRVSPTRGRRRHTRL 201
Score = 31.5 bits (70), Expect = 0.94
Identities = 11/59 (18%), Positives = 14/59 (23%)
Query: 545 RSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPR 603
R +S +P S PP S+ P P R R
Sbjct: 144 RDLRPANTTSTWEPPVSSDDEASSQSKPLATQPPVLALSNAPPRRVSPTRGRRRHTRLR 202
Score = 29.2 bits (64), Expect = 5.5
Identities = 11/62 (17%), Positives = 16/62 (25%)
Query: 536 DDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPL 595
+ + + + EP EA S P P L P R
Sbjct: 141 VGRRDLRPANTTSTWEPPVSSDDEASSQSKPLATQPPVLALSNAPPRRVSPTRGRRRHTR 200
Query: 596 VR 597
+R
Sbjct: 201 LR 202
Score = 28.8 bits (63), Expect = 7.7
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 539 KAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRC 598
+ VG S+ P + P + PP + P
Sbjct: 139 RCVGRRDLRPANTTSTWEPPVSSDDEASSQSKPLATQPPVLALSN--------APP---- 186
Query: 599 RQPPRSKLKSRIPRP 613
R+ ++ + R R
Sbjct: 187 RRVSPTRGRRRHTRL 201
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 34.3 bits (78), Expect = 0.14
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSR 609
+ P + P P P +P PP P+P + + P K++ +
Sbjct: 44 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK----PKPKPKPKPKPVKKVQEQ 99
Query: 610 IPRP 613
R
Sbjct: 100 PKRD 103
Score = 32.8 bits (74), Expect = 0.43
Identities = 12/64 (18%), Positives = 18/64 (28%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSR 609
E P+ + PP ++ PPP P + P P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 610 IPRP 613
P+P
Sbjct: 87 KPKP 90
Score = 32.0 bits (72), Expect = 0.82
Identities = 12/63 (19%), Positives = 16/63 (25%), Gaps = 3/63 (4%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQP--PRSKLK 607
+ P + S P + + PR L R QP P
Sbjct: 101 KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSR-NQPQYPARAQA 159
Query: 608 SRI 610
RI
Sbjct: 160 LRI 162
Score = 31.6 bits (71), Expect = 1.1
Identities = 10/32 (31%), Positives = 10/32 (31%)
Query: 549 REEPSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
EP EAP P P P P P
Sbjct: 64 EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 95
Score = 31.2 bits (70), Expect = 1.3
Identities = 11/63 (17%), Positives = 19/63 (30%)
Query: 551 EPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRI 610
+ P P P P P P+P+ + ++ P+ +K
Sbjct: 49 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 108
Query: 611 PRP 613
RP
Sbjct: 109 SRP 111
Score = 31.2 bits (70), Expect = 1.3
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 549 REEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLP 587
EP +P + + P P P P P ++ + P
Sbjct: 62 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 100
Score = 30.8 bits (69), Expect = 1.7
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 549 REEPSSPRKPEAPSSCIPPPPPPASLPPPPPPR 581
+E P KP+ P P P +
Sbjct: 73 KEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVK 105
Score = 30.8 bits (69), Expect = 2.1
Identities = 12/63 (19%), Positives = 19/63 (30%)
Query: 551 EPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRI 610
+P S P P P P +P P+V + P+ K K +
Sbjct: 33 QPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 92
Query: 611 PRP 613
+
Sbjct: 93 VKK 95
Score = 29.3 bits (65), Expect = 6.5
Identities = 11/62 (17%), Positives = 17/62 (27%)
Query: 552 PSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIP 611
+ P PPP + P P P P + + + P+ K K
Sbjct: 36 SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 95
Query: 612 RP 613
Sbjct: 96 VQ 97
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 34.9 bits (79), Expect = 0.16
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 553 SSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLT 590
S P+ +S I P PA +P P + T
Sbjct: 6 SIQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYT 43
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 32.5 bits (73), Expect = 0.16
Identities = 13/46 (28%), Positives = 13/46 (28%), Gaps = 4/46 (8%)
Query: 546 SGGREEPSSPRKPEAPSSCIPPPPPPASLPPP----PPPRRSSDLP 587
G P P A PP S PPP PP P
Sbjct: 58 PGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPP 103
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 33.3 bits (75), Expect = 0.19
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 433 AKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESL-SRIKDRLEKET 491
+ E+ + L + + K E+E D+ +E EDL SL + +
Sbjct: 48 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 107
Query: 492 AGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLI 529
+ L +++ E D + K L+ ++
Sbjct: 108 KEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 33.6 bits (76), Expect = 0.19
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKET--- 491
+E + K+ E E V+ + E EL+ + + E + L RL+ E
Sbjct: 16 KELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEAL 75
Query: 492 -----AGHLEAKQKVAELEDRISELKHRADFEQDERKRLE 526
+ ++ ++V+ LED +S+ + + + LE
Sbjct: 76 KEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 115
Score = 31.6 bits (71), Expect = 0.95
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 446 DELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELE 505
L+ E K +Q + E + E ++ LE + +A+Q+ +L+
Sbjct: 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLV---QAEQRNRDLQ 62
Query: 506 DRISELKHRADFEQDERKRLENLINS 531
LK+ + +++ +
Sbjct: 63 ADNQRLKYEVEALKEKLEHQYAQSYK 88
Score = 29.7 bits (66), Expect = 3.9
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
+++ + + L + + EQ D + K SL + RL +
Sbjct: 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQ----- 141
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLENL 528
A ++ A LE + E + Q + +L
Sbjct: 142 --AIERNAFLESELDEKESLLVSVQRLKDEARDL 173
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle; HET:
ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Length = 430
Score = 34.3 bits (79), Expect = 0.23
Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 38/212 (17%)
Query: 878 SMKELENDMTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKE----------------F 921
+K+L N + E F +
Sbjct: 61 ILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYK 120
Query: 922 LTSATCRLSEIEDLFQD--MKTRFDRAVRLFGEDNSSIQ--PEDFFVIFD------TFLT 971
+ T + ++ + + + G+ P + +F+ +
Sbjct: 121 IDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKK 180
Query: 972 TLNEAKLDNENMKRRREEEEKRARQDAEMKKRTTDRKQGAKENGVVISN--------GSV 1023
E K E + + E K R+ K G S +
Sbjct: 181 EYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVI 240
Query: 1024 KGEFDDLISALRTGDVFGEDSIAKIKRSRRSR 1055
E + L + + + KIK+ R+
Sbjct: 241 NNETEQLKAEEKK----ILNQFLKIKKKRKEL 268
Score = 32.0 bits (73), Expect = 1.2
Identities = 13/114 (11%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 414 EDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEK 473
D + I + ++ + + + KK+ +EL+ + LS + + + E
Sbjct: 152 GDVEQIAAQSP-VELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGEL 210
Query: 474 EDLDESLS-------------RIKDRLEKETAGHLEAKQKVAELEDRISELKHR 514
+ + R E + K + ++ ++ ++K +
Sbjct: 211 KTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKK 264
>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A
{Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3
Length = 754
Score = 34.3 bits (78), Expect = 0.26
Identities = 28/155 (18%), Positives = 43/155 (27%), Gaps = 13/155 (8%)
Query: 45 PTNEL-NTMFEELVEELDLTAPNKAAMLSLPDE--KKWQIYCSRKMDQTSTTDAPDNPEQ 101
TN L + +E L + A L + DE KWQ +M D
Sbjct: 497 DTNMLAQWTLKYTLEILGKVDQDTAKQLDVSDEEKTKWQ-DIVDRMYL-----PYDKDLN 550
Query: 102 YIEQLRNFKSSPLTEHDDTEIKSRTRILD-SLRTALRTQPHS---FVLRFIECEGLLTLL 157
Q F + R + S LR+ + + T
Sbjct: 551 IFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILRSPYIKQGDVLQGIWDFIDDYTPE 610
Query: 158 EYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSH 192
+ N D Y T SS+ I +++
Sbjct: 611 QKKANFDFYEPLTVHESSLSPAIHSVLAADLHYED 645
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 34.2 bits (78), Expect = 0.27
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 551 EPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRI 610
P+SP P ++ PA+ PP + P + +
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDP----------KPKKNKKPKNPTP 53
Query: 611 PRPYFPNVSVQVNGTIWTE 629
PRP N +V E
Sbjct: 54 PRPAGDNATVAAGHATLRE 72
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 33.3 bits (75), Expect = 0.28
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 547 GGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
G ++ P S P P PP
Sbjct: 1 GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQG 34
Score = 32.1 bits (72), Expect = 0.72
Identities = 8/36 (22%), Positives = 9/36 (25%)
Query: 545 RSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
+ GG R P S PP P
Sbjct: 7 KPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPH 42
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 33.2 bits (76), Expect = 0.31
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVR 597
++ P PS P P P S+P + L+ P R
Sbjct: 92 KDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLS---PAAR 136
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 33.8 bits (76), Expect = 0.34
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 547 GGREEPSSPRKPEAPSSCIPPPPPPASLPPPP----PPRRSSDLPYLTCPRPLVRC--RQ 600
G P + P + +PPP +LPPPP P R +R
Sbjct: 13 GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNA 72
Query: 601 PPRSKL---KSRIP 611
P++ KS++P
Sbjct: 73 VPKNSSLLKKSKLP 86
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 33.4 bits (77), Expect = 0.38
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 654 NGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILLSKLKMTDEEISKA-----ILS 708
+ D S D K+ +++ K + I+GR A +L ++ + +
Sbjct: 128 DRSLPDVSATDFEKV-DLTQFKWI-HIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVE 185
Query: 709 MDSADQLPLDMLEQLLKFTPNTEEAALLEEHSTETLARA 747
++ + + + + A L S E R
Sbjct: 186 VEKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRG 224
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural
protein, kinetochore, mRNA transport, nucleus,
phosphoprotein, translocation; 3.53A {Homo sapiens}
Length = 644
Score = 33.7 bits (76), Expect = 0.38
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 17/137 (12%)
Query: 850 LVELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLV 909
L+ LA + K + L K A+ S + L+ ++E++ + F Q +
Sbjct: 441 LLGLANMETRYFAKKKTLLGLSKLAALAS----DFSEDMLQEKIEEMAEQERFLLHQETL 496
Query: 910 PGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTF 969
P ++ L + + L E+N DF D
Sbjct: 497 PEQLL---AEKQLNLSAMPVLTAPQLIG----------LYICEENRRANEYDFKKALDLL 543
Query: 970 LTTLNEAKLDNENMKRR 986
E ++ ++K
Sbjct: 544 EYIDEEEDININDLKLE 560
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 33.4 bits (76), Expect = 0.42
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 552 PSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTC 591
P + A S PP L P R+ + +TC
Sbjct: 205 QGDPLRGTANLSETIRVPPT--LEVTQQPVRAENQVNVTC 242
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 33.4 bits (77), Expect = 0.43
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 478 ESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLI 529
++ +K+++ K+K+ + E + EL E+ R+ L N +
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 33.0 bits (74), Expect = 0.49
Identities = 14/81 (17%), Positives = 23/81 (28%)
Query: 537 DTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLV 596
D ++ + R SP K + S+P P R+ +
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298
Query: 597 RCRQPPRSKLKSRIPRPYFPN 617
+ +KS PY N
Sbjct: 299 PASVEYHAGMKSLNKAPYSSN 319
Score = 29.5 bits (65), Expect = 6.3
Identities = 5/79 (6%), Positives = 14/79 (17%), Gaps = 1/79 (1%)
Query: 516 DFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLP 575
+++ L+ +V + ++ S P
Sbjct: 230 NWDLSLFY-LDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRS 288
Query: 576 PPPPPRRSSDLPYLTCPRP 594
S +
Sbjct: 289 ETESVNPVSTPASVEYHAG 307
Score = 29.5 bits (65), Expect = 6.8
Identities = 11/70 (15%), Positives = 17/70 (24%)
Query: 515 ADFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASL 574
+ F DER +I + S S P + + S+
Sbjct: 234 SLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESV 293
Query: 575 PPPPPPRRSS 584
P P
Sbjct: 294 NPVSTPASVE 303
Score = 29.1 bits (64), Expect = 7.8
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 548 GREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRS 583
R + P + + + SL P S
Sbjct: 285 TRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSNS 320
Score = 29.1 bits (64), Expect = 8.4
Identities = 5/71 (7%), Positives = 9/71 (12%)
Query: 549 REEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKS 608
R + P P ++ + P R
Sbjct: 234 SLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESV 293
Query: 609 RIPRPYFPNVS 619
Sbjct: 294 NPVSTPASVEY 304
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 32.7 bits (74), Expect = 0.55
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 517 FEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSSPR------KPEAPSSCIPPPPP 570
++ R L+ I + +D + P +P P+ P++ P P
Sbjct: 198 INENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNN--PDNPD 255
Query: 571 PASLPPPPPPRRS 583
P +
Sbjct: 256 NGDNNNSDNPDAA 268
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 33.1 bits (76), Expect = 0.57
Identities = 11/101 (10%), Positives = 28/101 (27%), Gaps = 8/101 (7%)
Query: 426 KKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKD 485
L E+E A + + + + L + + ++L+ K +
Sbjct: 858 STWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKS--------VYL 909
Query: 486 RLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLE 526
+ + K+ LE E + + +
Sbjct: 910 GSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 950
Score = 30.8 bits (70), Expect = 3.5
Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 13/134 (9%)
Query: 394 QHWLLLDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENV 453
++ +L +L T ++ + + + AK + + + +E
Sbjct: 890 KYNRILKKLENWATTKSVY------LGSNETGDSITAVQAKLKNL--EAFDGECQSLE-- 939
Query: 454 DLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKH 513
+ L Q T+ + L+ KD + ++ ++EL+
Sbjct: 940 --GQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVK-SSAETYKNTLLAELER 996
Query: 514 RADFEQDERKRLEN 527
E +
Sbjct: 997 LQKIEDLHHHHHHH 1010
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 33.0 bits (75), Expect = 0.65
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 432 LAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKET 491
L + + + A+ + + D+ N+ ++ + + + R+ L+KE
Sbjct: 127 LEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQ------MRRLATALQKEI 180
Query: 492 AGHLEAKQK-VAELEDRISELKHRADFEQD 520
A+ V E D+I LK+ + E+D
Sbjct: 181 GERTHAETVMVKEYRDKIDALKNAIEVERD 210
Score = 29.2 bits (65), Expect = 8.9
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 23/126 (18%)
Query: 412 TGEDYDHILLKINVKKVVHL--LAKEEEIVAAKKKADELEMENVDLSNRLAKKEQE---- 465
TGE Y +VK+ V L L EEI D L + +L + E E
Sbjct: 61 TGESYGE-----SVKQAVLLNVLGSGEEIP------DPLSPGERGIQAKLKELEDEQRNE 109
Query: 466 ---LDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDER 522
L + KE + L + + + E +E +++ L ++ +E
Sbjct: 110 LVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKIL---TEED 166
Query: 523 KRLENL 528
++ L
Sbjct: 167 LQMRRL 172
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 32.5 bits (73), Expect = 0.71
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 442 KKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKV 501
+++A ++E +KK EL +K E + + + E+ + H++ K +
Sbjct: 32 QERA-DIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNL 90
Query: 502 AE-----LEDRISELKHRADFEQDERKRLENLI 529
++ E H + ERK LE+L
Sbjct: 91 CNDVNSQIKTWQKENYHHTLMQIKERKDLEDLF 123
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 33.0 bits (75), Expect = 0.73
Identities = 12/54 (22%), Positives = 18/54 (33%)
Query: 535 PDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPY 588
PD ++ E P+ AP+ P P A+ P +D P
Sbjct: 92 PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPV 145
Score = 29.6 bits (66), Expect = 8.0
Identities = 8/48 (16%), Positives = 11/48 (22%)
Query: 533 SVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
D K + + E + P PA P P
Sbjct: 80 CYSKDAKEIYYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAP 127
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 32.7 bits (75), Expect = 0.74
Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 5/110 (4%)
Query: 420 LLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDES 479
+ ++ + E+ +A +E++ L +K + +K +
Sbjct: 840 PAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSV 899
Query: 480 LSRIKDRLEKETAGHLEAKQKVAELEDRISELKH-RADFEQDERKRLENL 528
+ + T + K+ LE E + D L L
Sbjct: 900 YLGSNETGDSIT----AVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQL 945
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 32.7 bits (74), Expect = 0.75
Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 12/127 (9%)
Query: 523 KRLENLINSGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPP--ASLPPPPPP 580
+RLE ++ + +T + +SR GR + PE + P P L P
Sbjct: 240 ERLEEVLERSEIRLETPLLAISREDGRYRLKTDHGPEYADYVLLTIPHPQVVQLLPDAHL 299
Query: 581 RRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPRPYFPNVS-VQVNGTIWTE-------LDE 632
L V + L + + + D
Sbjct: 300 PELEQLTTH--STATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDH 357
Query: 633 SKLYASM 639
+ L A +
Sbjct: 358 TVLRAFV 364
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 32.8 bits (75), Expect = 0.75
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 146 RFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQ 205
+E G+ L +L + + C+ L N S + G G + + Q
Sbjct: 222 AIVEAGGMQALGLHLTDPSQ--------RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 273
Query: 206 SLSTENIKTKIAVLEILGAVC 226
L +++I IL +
Sbjct: 274 LLGSDDINVVTCAAGILSNLT 294
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 32.6 bits (74), Expect = 0.78
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 146 RFIECEGLLTLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQ 205
+E G+ L +L + + C+ L N S + G G + + Q
Sbjct: 219 AIVEAGGMQALGLHLTDPSQ--------RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 270
Query: 206 SLSTENIKTKIAVLEILGAVC 226
L +++I IL +
Sbjct: 271 LLGSDDINVVTCAAGILSNLT 291
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 32.6 bits (74), Expect = 0.90
Identities = 9/48 (18%), Positives = 13/48 (27%)
Query: 533 SVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
D K + +EP + + P P A P P
Sbjct: 80 CYCKDAKEIYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAP 127
Score = 31.8 bits (72), Expect = 1.5
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRS-SDLPY 588
+ AP++ P PA P P D P
Sbjct: 106 ASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPV 145
Score = 30.7 bits (69), Expect = 4.1
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLP 587
EP+ A ++ P PA+ P P +S P
Sbjct: 99 PEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGP 136
Score = 30.3 bits (68), Expect = 4.3
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLP 587
SS A + P P A P P ++ +
Sbjct: 104 AAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 32.2 bits (72), Expect = 0.91
Identities = 19/171 (11%), Positives = 46/171 (26%), Gaps = 19/171 (11%)
Query: 428 VVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQE--------KEDLDES 479
VV L ++ V + E + +L ++ +L + D
Sbjct: 305 VVFLNPDSKQGVKTMRMRLCPESR--KSARKLYERSHKLRKNNHHLFTTTINLNSMNDGW 362
Query: 480 LSRIKD---RLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINSGSVPD 536
+K+ + + + E K A +D + + +S D
Sbjct: 363 YGALKEAIQQQQNQLVWVSEGKADGATSDDLDLHDDRLSYLSAPGSEYSMYSTDSRHTSD 422
Query: 537 DTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLP 587
+ + ++ + + PP +++ P R
Sbjct: 423 ------YEDTDTEGGAYTDQELDETLNDEVGTPPESAITRSSEPVREDSSG 467
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa}
SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A*
1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E*
3utl_A
Length = 370
Score = 32.0 bits (73), Expect = 0.93
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 886 MTQLRNNLKEVSREIEFQRVQPLVPGDRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDR 945
LR NL + + +F + P ++ P +A E + + D +
Sbjct: 9 KKSLRQNLIKDGKLKDFLKTHKHNPASKYFP------EAAALIGDEPLENYLDTE----- 57
Query: 946 AVRLFGEDNSSIQPEDFFVIFDT 968
FG +DF VIFDT
Sbjct: 58 ---YFGTIGIGTPAQDFTVIFDT 77
>2p4r_T E3 ubiquitin-protein ligase itchy homolog; SH3 domain peptide
ligand complex; 2.00A {Rattus norvegicus}
Length = 26
Score = 28.1 bits (62), Expect = 0.94
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 566 PPPPPPASLPPPPPPRRSSDL 586
P PP S PPPP PRR + +
Sbjct: 5 PSRPPRPSRPPPPTPRRPASV 25
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 31.9 bits (72), Expect = 0.99
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 465 ELDQKTQE--KEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISE--LKHRADFEQD 520
D E + E+ + + + + E ++K AE +I L DF
Sbjct: 129 VYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPAS 188
Query: 521 ERKRLENLINSGSVPDDTK 539
E R+ LI + D K
Sbjct: 189 EMTRIARLIEKNKMSDGKK 207
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 31.1 bits (71), Expect = 1.00
Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 461 KKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQD 520
++ + ++ E + + +++RL+ A++++ L+D+ L+ ADF+ +
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLK-------AAEEELKGLKDKY--LRLLADFD-N 51
Query: 521 ERKRLE 526
RKR+E
Sbjct: 52 YRKRME 57
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 31.7 bits (71), Expect = 1.0
Identities = 12/76 (15%), Positives = 17/76 (22%), Gaps = 7/76 (9%)
Query: 542 GLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPY----LTCPRPLVR 597
G GR +P P P P + L L +
Sbjct: 4 GFFNMLGRRPFPAPTAMWRPRRRRQAAPMP---ARNGLASQIQQLTTAVSALVIGQATRP 60
Query: 598 CRQPPRSKLKSRIPRP 613
PR + + P
Sbjct: 61 QNPRPRPPPRQKKQAP 76
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 32.0 bits (72), Expect = 1.0
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 532 GSVPDDTKAV-GLSRSGGREEPSSPRKPEAPSSCI----PPPPPPASLPPPPPPRRSSDL 586
GS GL G S A S + PP P PPPPP + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 587 PYLTCPRPLVRCRQPPRSKLKSRIPRPYFP 616
P +++ + + P
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAPAVR 91
Score = 30.5 bits (68), Expect = 3.6
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 4/58 (6%)
Query: 552 PSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSR 609
+S P+ P P + PP + P P + + +
Sbjct: 83 TTSLA----PAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRIK 136
Score = 29.3 bits (65), Expect = 6.9
Identities = 10/94 (10%), Positives = 20/94 (21%), Gaps = 7/94 (7%)
Query: 530 NSGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLP-- 587
++ + + +P P AP++ PP R +
Sbjct: 25 SASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTT 84
Query: 588 -----YLTCPRPLVRCRQPPRSKLKSRIPRPYFP 616
+P +P Y
Sbjct: 85 SLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 31.9 bits (72), Expect = 1.3
Identities = 10/70 (14%), Positives = 20/70 (28%)
Query: 552 PSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIP 611
+ P S+ LP +D + PP L+
Sbjct: 12 QAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQT 71
Query: 612 RPYFPNVSVQ 621
+FP+ +++
Sbjct: 72 YGHFPSRAIK 81
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.3
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 12/33 (36%)
Query: 634 KLYASMELEVVDKLFCAYQKNGVPA---DGSVE 663
KL AS++L Y + PA ++E
Sbjct: 24 KLQASLKL---------YADDSAPALAIKATME 47
Score = 29.9 bits (66), Expect = 2.2
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 518 EQDERKRLENLINSGSV----PDDTKAVGLSRS 546
E+ K+L+ S+ D A+ + +
Sbjct: 18 EKQALKKLQA-----SLKLYADDSAPALAIKAT 45
Score = 28.4 bits (62), Expect = 8.5
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 48 ELNTMFEELVEELDLTAPNKAAMLSL 73
E + ++L L L A + A L++
Sbjct: 18 EKQAL-KKLQASLKLYADDSAPALAI 42
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 31.7 bits (71), Expect = 1.3
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 544 SRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRS 583
+ P P P+ P++ P P P +
Sbjct: 237 NNPDNPNNPDEPNNPDNPNN--PDNPDNGDNNNSDNPDAA 274
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 31.8 bits (73), Expect = 1.3
Identities = 7/54 (12%), Positives = 16/54 (29%)
Query: 476 LDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLI 529
+ + + + E + + + K + ERK L N +
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTV 54
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable
regulatory domain of potassium channel, membrane PR
transport protein; 2.20A {Mus musculus}
Length = 160
Score = 30.7 bits (70), Expect = 1.4
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 1018 ISNGSVKGEFDDLISA-LRTGDVFGEDSIAKIKRSRRSR 1055
+ +GS++ DD + A L GDVFG+ + ++
Sbjct: 74 VVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCA 112
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 31.9 bits (73), Expect = 1.5
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 438 IVAAKKKADELE-MENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHL- 495
I AK+KA ELE + + S E + E+E ++ + ++++ +
Sbjct: 841 IECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMS 900
Query: 496 --EAKQKVAELEDRISE 510
K+ +L+ +
Sbjct: 901 EENITIKLKQLKAEVIA 917
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport,
exportin, RAN GTPase, protein transport; HET: GTP; 2.0A
{Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A
2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 31.5 bits (71), Expect = 1.6
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 974 NEAKLDNENMKRRREEEE----KRARQDAEMKKR 1003
N+ + + ++RRR+ ++ K R +A K+R
Sbjct: 23 NKGRFSADELRRRRDTQQVELRKAKRDEALAKRR 56
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 29.4 bits (65), Expect = 1.6
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 548 GREEPSSPRKPEAPSSCIPPPPPPASLPPPPP 579
P+ R AP++ PP A PPP
Sbjct: 68 KMPLPTKLRPSAAPTA---PPTGAADSIRPPP 96
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 30.4 bits (68), Expect = 1.7
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 436 EEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHL 495
++ AKK AD L ++ + + + EL + E + + +K +
Sbjct: 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN------- 120
Query: 496 EAKQKVAELEDRISELK 512
+ ++ + +LE +++ K
Sbjct: 121 KYQKNIVKLETELNDSK 137
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 31.4 bits (69), Expect = 1.7
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 551 EPSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
P P P P+ P PA + P
Sbjct: 453 PPVKPTAPTKPTYETEKPLKPAPVAPNYEK 482
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 30.2 bits (68), Expect = 1.7
Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 22/109 (20%)
Query: 423 INVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSR 482
+N+ + +++ ++ LE E ++ L + E +L K ++
Sbjct: 9 VNMGSLF------QQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKK---------- 52
Query: 483 IKDRLEKETAGHLEAKQKVAELEDRISELKHRA-DFEQDERKRLENLIN 530
+ + + ++ + +A FEQD +R
Sbjct: 53 -----LQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERG 96
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 30.8 bits (68), Expect = 1.8
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 2/68 (2%)
Query: 553 SSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPR 612
SP + P PA P S P + P ++K
Sbjct: 2 GSPAATPEIR--VNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQIL 59
Query: 613 PYFPNVSV 620
F + V
Sbjct: 60 SLFEDTFV 67
Score = 29.7 bits (65), Expect = 4.6
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 552 PSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRP 594
+ P+ P P PPPP P + + P
Sbjct: 26 ATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVP 68
Score = 28.9 bits (63), Expect = 7.4
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 552 PSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
P P + +P P PP PP
Sbjct: 15 EPEPAGGATPGATLPKSPSQLRKGPPVPP 43
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate
biosynthesis, antibiotic resistance; 2.64A
{Mycobacterium tuberculosis}
Length = 318
Score = 31.0 bits (71), Expect = 1.8
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 558 PEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLV 596
P + PP S PP + + R L+
Sbjct: 6 PASAGRSTPPALAGHSTPPALAGHSTLCGRPVAGDRALI 44
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 29.8 bits (67), Expect = 1.8
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 549 REEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRS 583
R E + P P PP ++
Sbjct: 92 RGPEGFTTHLETTFTGDGTPKTIRVTQPLGPPTKA 126
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 31.4 bits (70), Expect = 1.9
Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 20/137 (14%)
Query: 392 HPQHWLLLDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEME 451
+ L QL Q ++ LL+ N++K L + E ++
Sbjct: 50 VSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNL---------QDNFQEDPIQ 100
Query: 452 NVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISEL 511
+ K+E+++ + Q + K EL+ ++ +
Sbjct: 101 MSMIIYSCLKEERKILENAQRFNQAQSGNIQ-----------STVMLDKQKELDSKVRNV 149
Query: 512 KHRADFEQDERKRLENL 528
K + + E K LE+L
Sbjct: 150 KDKVMCIEHEIKSLEDL 166
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 31.4 bits (70), Expect = 1.9
Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 467 DQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLE 526
+ ++ ++ES ++ + + A Q +L+ + +++ LE
Sbjct: 2 SELALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDLE 61
Query: 527 -NLINSGSVPDDTKAVG 542
L + P + K+
Sbjct: 62 QKLASGAENPGEKKSFS 78
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 30.4 bits (68), Expect = 1.9
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSS 554
L Q +A+ + + + ++R GS+P A ++++ G E +S
Sbjct: 79 LSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL---AYAVAKANGDEAAAS 135
Query: 555 PRKPEAPSS----CIPPPPPPASLPPPPPPRRSSD 585
+A +P ++ P + +
Sbjct: 136 AFLEQAEVDEQDVTLPDQMDASNFVQRPVISKPLE 170
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 31.4 bits (72), Expect = 2.0
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 424 NVKKVVHLLAKEEEIVAAKKKA-------DELEM---ENVDLSNRLAKKEQELDQKTQEK 473
+V L++ + + KA M +D+ ++E+ L +
Sbjct: 757 ENLEVFRFLSRADLLPERPAKALVKAMPRVTARMPLEGLLDVEEWRRRQEKRLKELLALA 816
Query: 474 EDLDESLSRIK-------DRLEKETAGHLEAKQKVAELEDRISEL 511
E L+ + +E E A E ++ + + +S++
Sbjct: 817 ERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 861
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 31.0 bits (70), Expect = 2.0
Identities = 18/119 (15%), Positives = 24/119 (20%), Gaps = 9/119 (7%)
Query: 512 KHRADFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSS---CIPPP 568
K R Q L +D K G ++P A +
Sbjct: 321 KFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQK 380
Query: 569 PPPASLPPPPPPRR--SSDLPYLTCP----RPLVRCRQPPRSKLKSRIPRPYFPNVSVQ 621
PP P P P Q + P+ P Q
Sbjct: 381 MQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQ 439
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled
coil, alanine, symmetry, axial stagger, BEND,
contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 28.6 bits (64), Expect = 2.0
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 425 VKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIK 484
+KK + +L ++E A +A++ E + R + E EL ++ + ++ L +
Sbjct: 4 IKKKMQMLKLDKE--NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61
Query: 485 DRLEKETAGHLEAKQKVAE 503
+ L+ A +K +
Sbjct: 62 ESLKDAQEKLELADKKATD 80
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 31.1 bits (69), Expect = 2.1
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Query: 544 SRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPR 603
+ ++ PS R+ + PPP P SS P + ++ P
Sbjct: 16 PPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVPT--IHFKESPF 73
Query: 604 SKLKSRIPRPYFPNVSVQVNGTI 626
K++ IP G
Sbjct: 74 YKIQRLIPELVMNVEVTGGRGMC 96
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO
structural genomics, JCSG, protein structure initiative,
PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 376
Score = 30.8 bits (70), Expect = 2.3
Identities = 11/73 (15%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 642 EVVDKLFCAYQKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILLSKLKMTDEE 701
+++++++ ++ G+P ++ ++ L +S ++ V + +N TI +T ++
Sbjct: 301 KMIEEVYSFCEEVGLPT--TLAEI-GLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKD 357
Query: 702 ISKAILSMDSADQ 714
+ A+ + D +
Sbjct: 358 VFFALKAADRYGR 370
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.4 bits (71), Expect = 2.3
Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 19/138 (13%)
Query: 441 AKKKADELEMENVDLSNRLAK-----------------KEQELDQKTQEKEDLDESLSRI 483
+K D+LE E + L+ L K K +ELD K ++ + + +
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967
Query: 484 KDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINSGSVPDDTKAVGL 543
+ E + E + ++ I+ K +A D K V A
Sbjct: 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKA--YADLEKAEPTGPLREEVEQLENAANE 2025
Query: 544 SRSGGREEPSSPRKPEAP 561
+ E ++ E
Sbjct: 2026 LKLKQDEIVATITALEKS 2043
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 31.1 bits (69), Expect = 2.4
Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 393 PQHWLLLDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMEN 452
Q +L + T+ D L + + V + E +AK +
Sbjct: 455 IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNE 514
Query: 453 VDLSNRL-----------AKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKV 501
+ + K E + Q +E+E + +++L KE +++
Sbjct: 515 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE-----GFQKES 569
Query: 502 AELEDRISELKHR 514
+++ I +L+ +
Sbjct: 570 RIMKNEIQDLQTK 582
>4hb1_A DHP1; designed helical bundle; 2.90A {Synthetic construct} SCOP:
k.8.1.1
Length = 108
Score = 29.4 bits (64), Expect = 2.4
Identities = 17/71 (23%), Positives = 38/71 (53%)
Query: 420 LLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDES 479
LLK +++ LL + +E+ +EL + + + +L ++ QEL +K +E L ++
Sbjct: 32 LLKQALQQAQQLLQQAQELAKKGGGGEELLKQALQQAQQLLQQAQELAKKGGGEELLKQA 91
Query: 480 LSRIKDRLEKE 490
L + + L++
Sbjct: 92 LQQAQQLLQQA 102
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding,
kinetoch replication-replication complex; 3.05A
{Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Length = 190
Score = 30.1 bits (67), Expect = 2.5
Identities = 16/96 (16%), Positives = 35/96 (36%)
Query: 446 DELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELE 505
D L + + ++ + + E L E L +++ +V EL+
Sbjct: 2 DPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61
Query: 506 DRISELKHRADFEQDERKRLENLINSGSVPDDTKAV 541
+ S+ ++ +D + L N+ S DD+
Sbjct: 62 TQTSQQAENSEVIKDLYEYLCNVRVHKSYEDDSGLW 97
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold
shock domain, ssDNA binding, DNA B protein; 2.80A {Homo
sapiens}
Length = 147
Score = 29.6 bits (66), Expect = 2.5
Identities = 11/57 (19%), Positives = 14/57 (24%), Gaps = 13/57 (22%)
Query: 561 PSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPRPYFPN 617
S PPP PP R R+ S L+ + P
Sbjct: 2 SSEPPPPPQPPTHQASVGLLDTP-------------RSRERSPSPLRGNVVPSPLPT 45
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 29.1 bits (65), Expect = 2.5
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 454 DLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISEL-K 512
S+ LAK +Q+ +K +E + L+ + L + + + K EL D + +L
Sbjct: 4 SYSSYLAKADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQT 63
Query: 513 HRADFEQDERK 523
+ DF + ++
Sbjct: 64 EKYDFAEQIKR 74
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 31.1 bits (69), Expect = 2.6
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 566 PPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRC--RQPPRSKL---KSRIP 611
P + P P ++DL L C RC P+++ K+++P
Sbjct: 13 ERNILPMTPVWAPVPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLP 63
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 30.9 bits (69), Expect = 2.6
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 433 AKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETA 492
A++ + +A + +E+ + A+ E + E L L L ET
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKA--QALAIETE 756
Query: 493 GHLEAKQKVAELEDRISELKHRADFEQDERKRLENL 528
LE +KV E+E + + + + E + ++L N+
Sbjct: 757 AELERVKKVREME--LIYARAQLELEVSKAQQLANV 790
Score = 30.5 bits (68), Expect = 3.3
Identities = 27/219 (12%), Positives = 72/219 (32%), Gaps = 16/219 (7%)
Query: 314 KLRTHENETLDRHLDF---FEMLRHEDESELARKYETDHIETKSATSMFNILRRKLGHTA 370
+ T ++ L L + FE+ D +E A+ + + ++ + +R +
Sbjct: 528 TIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVT 587
Query: 371 ---AYPHFLSLLHHCILLPLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHILLKINVKK 427
+ + ++ + FG D ++ ++V+
Sbjct: 588 FDDFHKNSARIIRMAV-----FGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQS 642
Query: 428 VVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRL 487
V ++ A +++ +L +E +N + Q+ +++ +I D+
Sbjct: 643 VE---PVDQRTRDALQRSVQLAIEIT--TNSQEAAAKHEAQRLEQEARGRLERQKILDQS 697
Query: 488 EKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLE 526
E E A + + + + + E R+E
Sbjct: 698 EAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIE 736
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 31.0 bits (71), Expect = 2.6
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 465 ELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKR 524
++L++ L ++ EK+ A + +K A L D L+ + + + K
Sbjct: 388 RSFTTPPNLKELEQKLDEVRK--EKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE 445
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 31.0 bits (71), Expect = 2.7
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 846 LLHYLVELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEV 896
+++YL E K F+ V K++E L + + S KE E +T + +K +
Sbjct: 468 MMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKAL 518
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.0 bits (71), Expect = 2.7
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 434 KEEEIVAAKKKADELEMENVDLSN--------RLAKKEQELDQKTQEKEDLDESLSRIKD 485
EEI A ++K +LE+E L RL E E+ L E +++++
Sbjct: 399 APEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEI-------AKLTEEIAKLRA 451
Query: 486 RLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERK 523
E+E + ++ L+ + R + E ER+
Sbjct: 452 EWEREREILRKLREAQHRLD------EVRREIELAERQ 483
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 164
Score = 30.0 bits (67), Expect = 2.8
Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 19/63 (30%)
Query: 566 PPPPPPASLPPPP-PPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPRPYFPNVSVQVNG 624
SLP PP + +PY R+ ++ + G
Sbjct: 6 SGHQQLNSLPTMEGPPTFNPPVPY------------------FGRLQGGLTARRTIIIKG 47
Query: 625 TIW 627
+
Sbjct: 48 YVP 50
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A
{Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A
1bug_A*
Length = 345
Score = 30.7 bits (68), Expect = 2.8
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 15/57 (26%)
Query: 560 APSSCIPPP------PPPASLPPPP------PPRRSSDLPYLTCPRPLVRCRQPPRS 604
AP I P PPA LPP PP S+ + Y ++ R +
Sbjct: 1 AP---IQAPEISKCVVPPADLPPGAVVDNCCPPVASNIVDYKLPAVTTMKVRPAAHT 54
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 30.2 bits (69), Expect = 2.9
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 20/98 (20%)
Query: 703 SKAILSMDSADQLPLDMLEQLLKF----TPNTEEAALL------EEHSTETLARADRFLY 752
+ D + QL++ PNT EAALL E + A +
Sbjct: 114 GQLYQGFDQDYV---AAMRQLIQQADVILPNTTEAALLTGAPYQVTPDLEVILPALQAQL 170
Query: 753 E------ISKIPHYEQRLRCLHYKKRFHFWIS-DIEPK 783
+ I+ + +Q + + P
Sbjct: 171 KTGAHAVITDVQRADQIGCAWLDEAGHVQYCGARRLPG 208
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular
trafficking, GTPase, vesicle recuitment, LCV, DRRA,
SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Length = 384
Score = 30.4 bits (67), Expect = 3.0
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 3/133 (2%)
Query: 399 LDRLAQQLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNR 458
LD+L +Q + + Y+ L EI + + + L +
Sbjct: 27 LDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEK 86
Query: 459 LAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHL---EAKQKVAELEDRISELKHRA 515
E+ + +E D+ L+ ++ + T E V+ L+D +
Sbjct: 87 HKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQ 146
Query: 516 DFEQDERKRLENL 528
+ + E +
Sbjct: 147 EVVEHEGQFYLLQ 159
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 30.3 bits (69), Expect = 3.4
Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
+++ +E+ +++ LE E + + + +++ L
Sbjct: 72 IISTWQELRQLREQIRSLEEE----KEAVTE---AVRALVVNQDNSQVQQDPQYQSLRAR 124
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINSGSVP--DDTKAVGLSRSG 547
E ++++ L + ++L+ + RL N + VP D+++A L G
Sbjct: 125 GR---EIRKQLTLLYPKEAQLEEQFY---LRALRLPNQTHP-DVPVGDESQARVLHVVG 176
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase,
RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A
{Homo sapiens} SCOP: h.1.27.1
Length = 71
Score = 27.8 bits (61), Expect = 3.5
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 442 KKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKV 501
K + L EN +L+ ++ K E+E + + E++ + + + E +A K+
Sbjct: 5 TKDIEILRRENEELTEKMKKAEEEYKLEKE--EEISNLKAAFEKNINTERTLKTQAVNKL 62
Query: 502 AELEDR 507
AE+ +R
Sbjct: 63 AEIMNR 68
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis
thaliana}
Length = 116
Score = 28.8 bits (64), Expect = 3.7
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 20/102 (19%)
Query: 421 LKINVKKVVHLLAKEE-----EIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQE--- 472
LKI ++ KE E+ K +++ + D K+++ + +++
Sbjct: 10 LKIKTSTCKRIV-KELHSYEKEVEREAAKTADMKDKGAD--PYDLKQQENVLGESRMMIP 66
Query: 473 ---------KEDLDESLSRIKDRLEKETAGHLEAKQKVAELE 505
DL +L+ +++ EKE +AK+ VA++E
Sbjct: 67 DCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVE 108
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone
methyltransferase, RRM fold, telomere, nuclear protein;
3.0A {Saccharomyces cerevisiae}
Length = 136
Score = 29.0 bits (64), Expect = 3.7
Identities = 10/74 (13%), Positives = 28/74 (37%)
Query: 936 FQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLTTLNEAKLDNENMKRRREEEEKRAR 995
+ + + A + + F++ F LN+ + N + + E K+ +
Sbjct: 55 YASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHSILNNIISKFVEINVKKLQ 114
Query: 996 QDAEMKKRTTDRKQ 1009
+ E K+ +++
Sbjct: 115 KLQENLKKAKEKEA 128
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 30.3 bits (69), Expect = 3.8
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 25/160 (15%)
Query: 422 KINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLS 481
VK V +L + E K+ + L E N++A E+ ++ ++ E +DE L+
Sbjct: 24 LEKVKWVDEILKLDTEWRTKLKEINRLRHE----RNKIAV---EIGKRRKKGEPVDELLA 76
Query: 482 RIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINSGSVP---DDT 538
+ + E +++ ELE+ + ELK + D RL N+ + SVP D+
Sbjct: 77 KSR-----------EIVKRIGELENEVEELKKKID---YYLWRLPNITHP-SVPVGKDEN 121
Query: 539 KAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPP 578
V + G + S P
Sbjct: 122 DNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKL 161
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 29.6 bits (67), Expect = 4.3
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 461 KKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAK--QKVAELEDRISELKHRADFE 518
E+ + + +E E ++ S + E +LEA+ + D I L+ +A+ E
Sbjct: 13 APEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGI--LRVKAEME 70
Query: 519 QDERKRLE 526
+ R+R E
Sbjct: 71 -NLRRRTE 77
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 28.0 bits (62), Expect = 4.4
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLE--KETA 492
EEE+ K+ D+++ + + E++ ++K DL S+ +++D++E
Sbjct: 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKN 72
Query: 493 GHLEAKQKVAELEDRISE 510
HLE + L+ + E
Sbjct: 73 YHLENEVA--RLKKLVGE 88
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: a.4.5.21
Length = 157
Score = 29.4 bits (65), Expect = 4.4
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 544 SRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPP--RRSSDLPYL 589
+ GR E + S PP P + SS Y+
Sbjct: 96 PMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYI 143
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase,
complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella
pneumoniae subsp} PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Length = 258
Score = 29.7 bits (66), Expect = 4.6
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 8/114 (7%)
Query: 261 KSTGIYRTDV-SIKTAL---MSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGI-QPIIDKL 315
++ G+ R D+ S + L ++A L++ E E+ I Q +D
Sbjct: 102 EAVGLSRDDLLSERHVLPGVRFAVDAYLNFARRACWQEAACSSLTELFAPQIHQSRLDSW 161
Query: 316 RTHENETLDRHLDFFEMLRHEDE--SELARKYETDHIETKSA-TSMFNILRRKL 366
H + FF + E + ++ M IL+ KL
Sbjct: 162 PQHYPWIKEEGYFFFRSRLSQANRDVEHGLALAKAYCDSAEKQNRMLEILQFKL 215
>2km6_A Nacht, LRR and PYD domains-containing protein 7; NLRP7, pyrin
domain, innate immune system, NALP, ATP-binding
mutation, leucine-rich repeat; NMR {Homo sapiens}
Length = 106
Score = 28.3 bits (63), Expect = 4.7
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 838 SSSSRGVTLLHYLVELAE---KRFKEVLK---LEEDLCH-----VKEASKVSMKEL 882
+S TL L +L E K FK +L LE+ L V+EA + E+
Sbjct: 4 TSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEADGKKLAEI 59
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane
targeting, GTPase, GAP, longin domain, SEDL, transport
protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4
PDB: 2go5_1
Length = 185
Score = 29.3 bits (65), Expect = 4.9
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 929 LSEIEDLFQDMKTRF----DRAVRLFGEDNSSIQPEDFFVIFDTFLTTL-NEAKLDNENM 983
L+ ++ L D+ F ++ + DF F L +K+
Sbjct: 85 LTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRAPTT 144
Query: 984 KRRREEEEKRARQDAEMKKRTTDRKQGAKENG 1015
++ E+ EK + M + ++ + +N
Sbjct: 145 MKKFEDSEKAKKPVRSMIETRGEKPKEKAKNS 176
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding,
transcription regulation, activator, nuclear protein,
phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo
sapiens} SCOP: b.1.18.1 b.2.5.3
Length = 365
Score = 29.8 bits (66), Expect = 5.0
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 553 SSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSR 609
P + + + P ++D PYL QP + + R
Sbjct: 8 GRPEQMFHLDPSLTHTIFNPEVFQPQMALPTADGPYLQI------LEQPKQRGFRFR 58
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 29.8 bits (67), Expect = 5.1
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 639 MELEVVDKLFCAYQKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILLSKLKMT 698
LE + L K +P ++E+L + ++ ++L V + +I K
Sbjct: 350 WPLEDFNNLASFMAKCHLPI--TLEEL-GIPNVTDEELLMVGRATLRPDESIHNMSKKFN 406
Query: 699 DEEISKAILSMDSADQ-------LPLDMLEQLLKFTP 728
+I+ AI ++DS Q + +P
Sbjct: 407 PSQIADAIKAVDSYSQKWQEQTGWTERFRLPPSRHSP 443
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 29.5 bits (67), Expect = 5.2
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 568 PPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPR 612
PP P P P + P +PP+ K+ PR
Sbjct: 5 PPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPR 49
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 29.9 bits (68), Expect = 5.2
Identities = 7/70 (10%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 433 AKEEEIVAAKKKADELEMENVDLSNRLAKKE-QELDQKTQEKEDLDESLSRIKDRLEKET 491
E + K D + + KE + L ++ +L + + + +
Sbjct: 194 GSTELLTELLLKKDLSGLNA-FIEKNNFSKELRGLLKEIFITNELSRLENLVTNTKDDVL 252
Query: 492 AGHLEAKQKV 501
+ ++
Sbjct: 253 ISSFDQLKEF 262
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 29.6 bits (67), Expect = 5.2
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 18/76 (23%)
Query: 465 ELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQD---- 520
E++ +DL E ++ L+ + K+++ E+ + + D +
Sbjct: 3 EINPVNNRIQDLTERSDVLRGYLDYDA-----KKERLEEVNAELEQ----PDVWNEPERA 53
Query: 521 -----ERKRLENLINS 531
ER LE ++++
Sbjct: 54 QALGKERSSLEAVVDT 69
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine
oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN;
2.45A {Emericella nidulans}
Length = 797
Score = 29.9 bits (66), Expect = 5.3
Identities = 11/39 (28%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 541 VGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPP 579
VG S S P E S C PP P
Sbjct: 30 VGRSNQHI-THQSRPYTNEYASPCQITPPQEIKAPKENV 67
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase,
actin-bindi protein binding, cytoskeleton regulator;
2.70A {Drosophila melanogaster}
Length = 190
Score = 29.2 bits (65), Expect = 5.4
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 398 LLDRLAQQL-TLQTE----TGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMEN 452
L+ L Q++ +L+ E + E + L ++ + + E + D +
Sbjct: 20 LIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNIT 79
Query: 453 ---VDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLE 488
+ LS RLA+ E L+ + QE+ L+ + +++E
Sbjct: 80 SLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQME 118
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 29.9 bits (68), Expect = 6.2
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 460 AKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQ 519
+K ++L++ L ++ EK+ A + +K A L D L+ + + +
Sbjct: 383 SKVRLRSFTTPPNLKELEQKLDEVRK--EKDAAVQSQEFEKAASLRDTEQRLREQVEDTK 440
Query: 520 DERKR 524
K
Sbjct: 441 KSWKE 445
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily
H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD,
C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B
3ukv_B
Length = 212
Score = 28.9 bits (65), Expect = 6.5
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1018 ISNGSVKGEFDDLISA-LRTGDVFGEDSIAKIKRSRRSR 1055
+ +GS++ D+ + A L GD+ G DS+ K + + +
Sbjct: 122 VCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTNA 160
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix,
dimeriza contractIle protein; 2.70A {Dictyostelium
discoideum} SCOP: h.1.10.1
Length = 101
Score = 28.0 bits (61), Expect = 6.5
Identities = 22/96 (22%), Positives = 44/96 (45%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKE 490
L E + + K ++L + L++ LA E E ++ + +L+ L LE E
Sbjct: 6 LAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELE 65
Query: 491 TAGHLEAKQKVAELEDRISELKHRADFEQDERKRLE 526
+E + ++A+ E + L+ + DE+ +LE
Sbjct: 66 KLARMELEARLAKTEKDRAILELKLAEAIDEKSKLE 101
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 29.7 bits (67), Expect = 6.5
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 7/64 (10%)
Query: 549 REEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKS 608
R++P +K ++ +S + + R P +
Sbjct: 256 RQQPLDAKKS-------AKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAAT 308
Query: 609 RIPR 612
RI R
Sbjct: 309 RIGR 312
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 29.5 bits (66), Expect = 6.6
Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 11/135 (8%)
Query: 97 DNPEQYIEQLRNFKSSP----LTEHDDTEIKSRTRILDSLRTALRTQPHSFVLRFIECEG 152
+ +E + + E + R L +P+ + I G
Sbjct: 7 EAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSA--TQKFRKLLSKEPNPPIDEVISTPG 64
Query: 153 LL-TLLEYLKNLDHYSGQTSLHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTEN 211
++ +E+LK +L + + + ++ ++ ++ GA+ I + LS+E
Sbjct: 65 VVARFVEFLKR----KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 212 IKTKIAVLEILGAVC 226
+ + LG +
Sbjct: 121 EDVQEQAVWALGNIA 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 29.1 bits (65), Expect = 7.0
Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 11/139 (7%)
Query: 401 RLAQ---QLTLQTETGEDYDHILLKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSN 457
L Q ++ E + +++ + AKKK E
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE------ 130
Query: 458 RLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADF 517
+ QE + + + R + ++ GH + A+ ++
Sbjct: 131 --RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188
Query: 518 EQDERKRLENLINSGSVPD 536
+ +++ +PD
Sbjct: 189 MDELFSQVDEKRKKRDIPD 207
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 29.6 bits (65), Expect = 7.1
Identities = 41/291 (14%), Positives = 89/291 (30%), Gaps = 32/291 (10%)
Query: 243 QRFCNERSRFQGIVNDLDKSTGIYRTDVSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYE 302
F N+ R+Q +N D + R + AL ++ S + L +
Sbjct: 413 NTFENDFLRYQPELNLFDFLSSGKRE--AFNAALQKAFEQYIT----DKSAAWTLTAEKD 466
Query: 303 V--IMLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMFN 360
+ + + N+ D+ + + + + + K A + +
Sbjct: 467 INAAFKELSRSASQYGASYNQITDQITEKLTGKDVKVHTTTTAEEDNSPGWAKWAMGLLS 526
Query: 361 ILRRKLGHTAAYPHFLSLLHHCILLPLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHIL 420
+ + L A + + G + L + L
Sbjct: 527 LSKGNLAGFALAGAGFDWKNILLNYFTVIGIGGIITAVTGILLGPIGF----------AL 576
Query: 421 LKINVKKVVHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESL 480
L + V + A+ E + AKK+ L L + E Q + E
Sbjct: 577 LGLGVGFLQADQARRELVKTAKKE----------LVKHLPQVAHEQSQVVYN--AVKECF 624
Query: 481 SRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
+ + K + +++ +EL++ + + + R + E RL+NL
Sbjct: 625 DSYEREVSKRINDDIVSRK--SELDNLVKQKQTREINRESEFNRLKNLQED 673
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 29.4 bits (65), Expect = 7.4
Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 119 DTEIKSRTRILDSLRTALRTQPHSFVLRFIECEGLLTLLEYLKNLDHYSGQTSL------ 172
+R +++ + + + R +E GL LL+ L+ Y ++++
Sbjct: 161 TISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSS 220
Query: 173 HSSIIGCIKALMNNSTGRSHVLGYPGAI-DIIAQSLSTENIKTKIAVLEILGAVCLIP 229
+ C+ + N + I + I L ++++K+ V + A+ P
Sbjct: 221 STIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGP 278
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 29.5 bits (67), Expect = 7.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 846 LLHYLVELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEV 896
+++YL E K F+ V K++E L + + S KE E +T + +K +
Sbjct: 468 MMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKAL 518
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break
repair, V(D)J recombination, protein-protein complex,
coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP:
b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Length = 213
Score = 29.0 bits (64), Expect = 7.7
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 436 EEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHL 495
+ I + K + L+ EN L + ++ KE L+ L ++
Sbjct: 132 DTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL------YKRFILVLN 185
Query: 496 EAKQKVAELEDRISELKHRADFEQDER 522
E K K+ L +++ + + +
Sbjct: 186 EKKTKIRSLHNKLLNAAQEREKDIKQE 212
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein,
kinesin motor homology domain, karyog mitosis,
microtubules; HET: ADP EBC; 2.30A {Saccharomyces
cerevisiae} PDB: 1u0i_A
Length = 333
Score = 29.1 bits (64), Expect = 8.2
Identities = 7/50 (14%), Positives = 22/50 (44%)
Query: 480 LSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLI 529
++ ++ + ++++++ E ++ + E +RLEN I
Sbjct: 5 IAALEKEIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSRRLENSI 54
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 29.1 bits (64), Expect = 8.5
Identities = 17/129 (13%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
EE++ + +ELE +L + + E+ + + E++ L++ +
Sbjct: 369 EEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAK----------Q 418
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSS 554
E + E+E + SE + + +D R++ + + + ++ +
Sbjct: 419 EEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHD 478
Query: 555 PRKPEAPSS 563
S
Sbjct: 479 NASDAGSES 487
Score = 29.1 bits (64), Expect = 8.8
Identities = 18/123 (14%), Positives = 39/123 (31%)
Query: 435 EEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGH 494
+ +++ +EL+ L + E + E E +SRI+ +E + +
Sbjct: 376 QAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSET 435
Query: 495 LEAKQKVAELEDRISELKHRADFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSS 554
+++V + + E + D + S SGG +
Sbjct: 436 RRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARG 495
Query: 555 PRK 557
P
Sbjct: 496 PDD 498
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 29.1 bits (65), Expect = 8.7
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 715 LPLDMLEQLLKFTPNTEEAALLEEHSTETLARADRFLYEI-SKIPHYEQRLRCLHYKKRF 773
PL +L+ + + T E +E L+ + + E LR Y++R
Sbjct: 179 YPL-LLQSIGQNTEEPTEREKVE----LAAECCREILHHVNQAVRDMEDLLRLKDYQRRL 233
Query: 774 HFWISDIEPKIKSVMEASREVTRSRRLRK 802
+ + E ++L
Sbjct: 234 DLS-HLRQSSDPMLSEFKNLDITKKKLVH 261
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3,
CD40-binding protein, apoptosis; 2.80A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Length = 228
Score = 28.9 bits (64), Expect = 8.8
Identities = 8/68 (11%), Positives = 19/68 (27%)
Query: 464 QELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELKHRADFEQDERK 523
++ ++ + ESL LE + + LE ++S
Sbjct: 1 RQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLA 60
Query: 524 RLENLINS 531
++
Sbjct: 61 DMDLRFQV 68
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 29.2 bits (64), Expect = 8.9
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 442 KKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKV 501
+++ + + + + + + L + + LDE+ + L + + KQ+V
Sbjct: 71 RQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRR---IVTLKQRV 127
Query: 502 AELEDRISELKHRADFEQDERKRLE 526
A +RI L++ + E KRLE
Sbjct: 128 ATQVNRIKALQNSIQEQVVEMKRLE 152
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil,
coiled coil, cytoplasm, disease mutation, ectodermal
dysplasia; 3.20A {Homo sapiens}
Length = 130
Score = 27.9 bits (61), Expect = 9.1
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
Query: 431 LLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQE----KEDLDESLSRIKDR 486
L + + AA K+ LE S + + E E + Q+ + L ++
Sbjct: 11 LQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAA 70
Query: 487 LEKETAGHLEAKQKVAELEDRISEL------KHRADFEQDERKRLENL 528
L E E K+K+A+L+ +L ++ ERKR L
Sbjct: 71 LRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQL 118
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 29.0 bits (66), Expect = 9.5
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 916 PVMKEFLTSATCRLS--------EIEDLFQDMKTRFDRAVRLFGEDNSSI 957
P+ + F S + R S EI+ Q ++ +R F +D+ ++
Sbjct: 375 PLHRLFDASGSARASLYFYNTKEEIDLFLQSLQ----ATIRFFSDDDFTV 420
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis,
CELL_cycle regulation, alternative splicing, cell cycle,
cell division; HET: MSE; 2.50A {Homo sapiens}
Length = 78
Score = 26.8 bits (59), Expect = 9.7
Identities = 9/58 (15%), Positives = 27/58 (46%)
Query: 455 LSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELK 512
+ + + + EL+ + +EDL + ++++ + + E + + L+ + EL
Sbjct: 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,341,404
Number of extensions: 1032219
Number of successful extensions: 5411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4821
Number of HSP's successfully gapped: 372
Length of query: 1074
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 970
Effective length of database: 3,798,009
Effective search space: 3684068730
Effective search space used: 3684068730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.7 bits)