RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8075
(1074 letters)
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 332
Score = 279 bits (716), Expect = 2e-86
Identities = 106/336 (31%), Positives = 175/336 (52%), Gaps = 9/336 (2%)
Query: 675 KILSVIDGRRAQNCTILLSKLKMTDEEISKAILSMDSADQLPLDMLEQLLKFTPNTEEAA 734
K L V+D + AQN +I L +M +EI IL ++ L M++ L+K P E+
Sbjct: 2 KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNE-AVLTESMIQNLIKQMPEPEQLK 60
Query: 735 LLEEH--STETLARADRFLYEISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASR 792
+L E + LA +++F + +P RL + +K +F + +I+P+I SV A
Sbjct: 61 MLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACE 120
Query: 793 EVTRSRRLRKLLELVLALGNYMNKG-ARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLV 851
E+ +S LLEL L +GNYMN G A GF ++ L KL DTK S+ + +TLLH+L
Sbjct: 121 ELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTK-SADQKMTLLHFLA 179
Query: 852 ELAEKRFKEVLKLEEDLCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQPLVPG 911
EL E EVLK ++L HV++AS+VS + L+ + Q++ + +V R+++
Sbjct: 180 ELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQ-NFPAATDEK 238
Query: 912 DRFLPVMKEFLTSATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSSIQPEDFFVIFDTFLT 971
D+F+ M F+ A + +++ + +M+T + F D + E+FF+ F
Sbjct: 239 DKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRN 298
Query: 972 TLNEAKLDNENMKRRREEEEKRARQDAEMKKRTTDR 1007
+A +N+ +RRE EEK R +K +R
Sbjct: 299 MFLQAVKENQ---KRRETEEKMRRAKLAKEKAEKER 331
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 269 bits (688), Expect = 2e-81
Identities = 83/433 (19%), Positives = 164/433 (37%), Gaps = 52/433 (12%)
Query: 592 PRPLVRCRQPPRSKLKSRIPRPYFPNVSVQVNGTIWTELDESKLYASMELEVVDKLFCAY 651
PRP + +Q KL + GT E LY L ++K F A
Sbjct: 3 PRPHKKLKQLHWEKL---------DCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAR 53
Query: 652 QKNGVPADGSVEDLTKLGKISKSKILSVIDGRRAQNCTILLSKL-KMTDEEISKAILSMD 710
+ + + + + ++ + +Q I L ++ ++ K IL+ D
Sbjct: 54 EIKSLAS----------KRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCD 103
Query: 711 S-------------ADQLPLDMLEQLLKFTPNTEEAALLEEHST--------ETLARADR 749
++ + + P + + + L RAD+
Sbjct: 104 RDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQ 163
Query: 750 FLYE--ISKIPHYEQRLRCLHYKKRFHFWISDIEPKIKSVMEASREVTRSRRLRKLLELV 807
+ ++ ++ R+R L + +++ K++ V +A + S LR + ++
Sbjct: 164 IYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVI 223
Query: 808 LALGNYMNKGARGNASGFRLTSLNKLVDTKSSSSRGVTLLHYLVELAEKRFKEVLKLEED 867
LA+GN+MN ++ A GF+L++L +L K ++ +T L+Y+ ++ + +
Sbjct: 224 LAVGNFMNDTSK-QAQGFKLSTLQRLTFIK-DTTNSMTFLNYVEKIVRLNYPSFNDFLSE 281
Query: 868 LCHVKEASKVSMKELENDMTQLRNNLKEVSREIEFQRVQP---LVPGDRFLPVMKEFLTS 924
L V + KVS+++L ND ++ V R +E + P D+ L L
Sbjct: 282 LEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPE 341
Query: 925 ATCRLSEIEDLFQDMKTRFDRAVRLFGEDNSS-IQPEDFFVIFDTFLTTLNEAKLDNENM 983
A + +ED + F+ + +GED+ FF F F+ +A+ N
Sbjct: 342 ARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNL-- 399
Query: 984 KRRREEEEKRARQ 996
EEE +
Sbjct: 400 -AAEEEERLYIKH 411
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1
(Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 343
Score = 264 bits (675), Expect = 2e-80
Identities = 98/361 (27%), Positives = 177/361 (49%), Gaps = 32/361 (8%)
Query: 99 PEQYIEQLRNFKSSPLTEHDDTEIKSRTRILDSLRTALRTQPHSFVLRFIECEGLLTLLE 158
YI++LR+ L+SLR +L P S+V F EGL +LL+
Sbjct: 4 AMMYIQELRS----------GLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLD 52
Query: 159 YLKNLDHYSGQTS------LHSSIIGCIKALMNNSTGRSHVLGYPGAIDIIAQSLSTENI 212
LK L +TS II C+KA MNN G +L I ++ +++
Sbjct: 53 ILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 112
Query: 213 KTKIAVLEILGAVCLIP---GGHKKVLDAMSHYQRFCNERSRFQGIVNDLDKSTGIYRTD 269
I ++L A+C++P +++VL+AM+ +E RFQ +++ L T I
Sbjct: 113 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSI---- 167
Query: 270 VSIKTALMSFLNAVLSYGPGQHSLEFRLHLRYEVIMLGIQPIIDKLRTHENETLDRHLDF 329
++K + +NA+++ L+FR+H+R E++ LG+ ++ +LR ENE + L
Sbjct: 168 -ALKVGCLQLINALITPAE---ELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCV 223
Query: 330 FEMLRHEDESELARKYETDHIETKSATSMFNILRRKLGHTAAYPHFLSLLHHCILLPLEF 389
F+ ED +L + + +E +F I+ + + A PHFLS+L H +L+ ++
Sbjct: 224 FDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDY 283
Query: 390 GCHPQHWLLLDRLAQQLTLQTETGEDYDHIL--LKINVKKVVHLLAKEEEIVAAKKKADE 447
PQ++ L++ Q+ L + G D D L+I+++++V + + ++ ++ KA E
Sbjct: 284 EARPQYYKLIEECVSQIVLH-KNGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSEAKATE 342
Query: 448 L 448
L
Sbjct: 343 L 343
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 34.1 bits (78), Expect = 0.028
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
+ S P+ P PP PP P
Sbjct: 92 QVSPSAPAAPVPTPICPTTTPPPPPPPSPEA 122
Score = 32.5 bits (74), Expect = 0.11
Identities = 11/40 (27%), Positives = 12/40 (30%)
Query: 557 KPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLV 596
K + S P P P PP P P P V
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYV 129
Score = 29.1 bits (65), Expect = 1.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 550 EEPSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
P++P + PPPPPP S PP
Sbjct: 96 SAPAAPVPTPICPTTTPPPPPPPSPEAHVPP 126
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 35.4 bits (81), Expect = 0.031
Identities = 11/96 (11%), Positives = 28/96 (29%)
Query: 433 AKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLEKETA 492
A+++ + + + E + + + DE+ E
Sbjct: 180 AQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERD 239
Query: 493 GHLEAKQKVAELEDRISELKHRADFEQDERKRLENL 528
+ + RI++L+ + E R +L
Sbjct: 240 RIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASL 275
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 75
Score = 32.0 bits (73), Expect = 0.038
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 459 LAKKEQELDQKTQEKEDLDESLSRIKDRLE-KETAGHLEAKQKVAELEDRISELKHR 514
+ Q+L+++ + ++ + L + + + + +G AKQ+ A +E RI L+
Sbjct: 10 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDI 66
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 32.4 bits (74), Expect = 0.094
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 548 GREEPSSPRKPEAPSSCIPPPPPPASLPPPPPP 580
G +SP +AP++ P + P P
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAP 45
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 32.0 bits (71), Expect = 0.47
Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 974 NEAKLDNENMKRRREEEE----KRARQDAEMKKR-----TTDRKQGAKENGVVISNGSVK 1024
N+ + + ++RRR+ ++ K R +A K+R T ++ V ++
Sbjct: 12 NKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFY 71
Query: 1025 GEFDDLISALRTGDVFGEDSIAKIKRSRRSRHSPSSAREDTRERVI 1070
+ + + + +D ++ + + R S + VI
Sbjct: 72 SQLQQELPQMTQQ-LNSDDMQEQLSATVKFRQILSREHRPPIDVVI 116
>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis
[TaxId: 38902]}
Length = 574
Score = 31.3 bits (70), Expect = 0.64
Identities = 21/149 (14%), Positives = 36/149 (24%), Gaps = 24/149 (16%)
Query: 455 LSNRLAKKEQELDQKTQE--KEDLDESLSRIKDRLEKETAGHLEAKQKVAELEDRISELK 512
LS+ K ++ + ++ L + DR E G ++ + + +
Sbjct: 107 LSSLYMKPVEQPNPNPGANISDNAYAQLGLVLDRSVLEAPGGVDRESASFMFGEDV---- 162
Query: 513 HRADFEQDERKRLENLINSGSVPDDTKAVG--LSRSGGREEPSSPRKPEAPSSCIPP--- 567
AD G P + P P P P
Sbjct: 163 --ADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNNPNGPKMPFRQYHA 220
Query: 568 -----------PPPPASLPPPPPPRRSSD 585
L PP R ++D
Sbjct: 221 PFYGKTTKRFATQSEHFLADPPGLRSNAD 249
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 325
Score = 30.7 bits (69), Expect = 0.86
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 15/89 (16%)
Query: 53 FEELVEELDLTAPNKAA-MLSLPDEKKWQIYCSRKMDQTSTTDAPDNPEQYIEQL----- 106
F+E +E L+ PN A + + W +Y + P+Q +E L
Sbjct: 126 FQEEIEFLNAIFPNGAGYCMGRMNSDCWYLYTL----DFPESRVISQPDQTLEILMSELD 181
Query: 107 -----RNFKSSPLTEHDDTEIKSRTRILD 130
+ + +T D T ++
Sbjct: 182 PAVMDQFYMKDGVTAKDVTRESGIRDLIP 210
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 180
Score = 29.8 bits (66), Expect = 1.1
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 429 VHLLAKEEEIVAAKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLSRIKDRLE 488
V LL EEEI A+K + +E LS ++ + + + K + +I E
Sbjct: 14 VPLLTLEEEIDLARKVEEGMEAIK-KLSEATGLDQELIREVVRAKILGTARIQKIPGLKE 72
Query: 489 KETAGHLEAKQKVAELEDRISELKHRADFEQDERKRLENLINS 531
K +E + +L+ ELK ++ ++LI +
Sbjct: 73 KPDPKTVE--EVDGKLKSLPKELKRYLHIAREGEAARQHLIEA 113
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 30.6 bits (68), Expect = 1.1
Identities = 23/230 (10%), Positives = 59/230 (25%), Gaps = 12/230 (5%)
Query: 305 MLGIQPIIDKLRTHENETLDRHLDFFEMLRHEDESELARKYETDHIETKSATSMFNILRR 364
I+P I + ++ + + + + + +
Sbjct: 505 NDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKL--ISPISLMNMVAFDP 562
Query: 365 KLGHTAAYPHFLSLLHHCILLPLEFGCHPQHWLLLDRLAQQLTLQTETGEDYDHILLKIN 424
G Y +L + LE+ + + ++L + E + I
Sbjct: 563 H-GKIKKYNSVNEILSEFYYVRLEYYQKRKDHMS-----ERLQWEVEKYSFQVKFIKMII 616
Query: 425 VKKVVHLLAKEEEIVA---AKKKADELEMENVDLSNRLAKKEQELDQKTQEKEDLDESLS 481
K++ I+ + + + ++++ D ++ S
Sbjct: 617 EKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEES 676
Query: 482 RIKDRLEKETAGHLEAKQKVAELEDRISEL-KHRADFEQDERKRLENLIN 530
+D L RI L K R +++ E +
Sbjct: 677 SHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELE 726
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 28.6 bits (64), Expect = 2.7
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 565 IPPPPPPASLPPPP----PPRRSSDLPYLTCPRPLVRC 598
+PPP +LPPPP P R +R
Sbjct: 15 LPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRS 52
>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha
constant domain 1, CH1-alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 27.4 bits (60), Expect = 3.5
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 568 PPPPASLPPPPPPRRSSDLPYLTC 591
P P PP SSD + C
Sbjct: 3 ARNPTIYPLTLPPALSSDPVIIGC 26
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II
FOLH1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 28.7 bits (63), Expect = 4.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 734 ALLEEHSTETLARADRFLYEISKIPHY 760
A L+E E +FLY ++IPH
Sbjct: 4 AFLDELKAE---NIKKFLYNFTQIPHL 27
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 26.2 bits (58), Expect = 4.8
Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 459 LAKKEQELDQ-KTQEKEDLDESLSRIKDR-LEKETAGHLEAKQKVAELEDRISELKHR 514
K +ELD K+ + ++ +++ ++ KE A + A+++ E RI +++ +
Sbjct: 10 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAK 67
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 27.6 bits (61), Expect = 4.8
Identities = 11/55 (20%), Positives = 17/55 (30%)
Query: 535 PDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYL 589
P+ ++ + S E SS PP P + SS Y+
Sbjct: 87 PEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYI 141
>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase
catalytic subunit alpha-1, AMPK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 153
Score = 27.7 bits (61), Expect = 4.8
Identities = 9/69 (13%), Positives = 17/69 (24%)
Query: 516 DFEQDERKRLENLINSGSVPDDTKAVGLSRSGGREEPSSPRKPEAPSSCIPPPPPPASLP 575
DF + + E + + + + + + S S P
Sbjct: 67 DFRSIDDEITEAKSGTATPQRSGSISNYRSCQRSDSDAEAQGKPSEVSLTSSVTSLDSSP 126
Query: 576 PPPPPRRSS 584
PR S
Sbjct: 127 VDVAPRPGS 135
>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon
constant domain 4, CH4-epsilon {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 27.0 bits (59), Expect = 4.9
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 566 PPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLK 607
P P P S D L C L++ P ++
Sbjct: 1 PRAAPEVYAFATPEWPGSRDKRTLAC---LIQNFMPEDISVQ 39
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 28.4 bits (63), Expect = 5.3
Identities = 25/162 (15%), Positives = 43/162 (26%), Gaps = 14/162 (8%)
Query: 555 PRKPEAPSSCIPPPPPPASLPPPPPPRRSSDLPYLTCPRPLVRCRQPPRSKLKSRIPRPY 614
++ S P + SD R ++
Sbjct: 288 IVSNDSSDSDDESHEPKGTENEDAGSDYQSDNQASWIHRMIMALVSDSALFNTREGRAGK 347
Query: 615 FPNVSVQVNGTIWTELDESKLYASMELEVVDKLFCAYQKNGVPADGSVEDLTKLGKISKS 674
N + +N L+ S + + F + + AD + KS
Sbjct: 348 VHNFMLGLN------LNTSYPLSPLSDFATQDSFDDDELDAAVADPDEFERIYEPLDVKS 401
Query: 675 KILSVIDGRRAQNCTI--LLSKLKMTDEEISKAILSMD-SAD 713
K + V+D N +L + D I+S D SA
Sbjct: 402 KKIHVVDSGLTFNLPYPLILRPQRGVD-----LIISFDFSAR 438
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,934,031
Number of extensions: 194358
Number of successful extensions: 842
Number of sequences better than 10.0: 1
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 52
Length of query: 1074
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 979
Effective length of database: 1,103,246
Effective search space: 1080077834
Effective search space used: 1080077834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.8 bits)