BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8076
(737 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 335 bits (860), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 212/714 (29%), Positives = 339/714 (47%), Gaps = 113/714 (15%)
Query: 15 NKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFT---KWF 71
N + C N ++Y Y++SI P++FW + G + W + ++ + S P KW+
Sbjct: 12 NIADRCLINP-EQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
G +N N +DRH++ + A+I + T + ++Y EL V A +L +G+
Sbjct: 71 EDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCG 191
GD V IYMP++PEA V+MLA R+GA+HSV+FGGF+ + R+ + +++I A G
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 192 VEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL-SHR 250
V + + K +++AL+ + +I +R + + G D+ W D + + H+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310
+ A DPL+ILYTSG+TGK PKG+L GG++ A T +++
Sbjct: 250 PEAMNAEDPLFILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHP 297
Query: 311 DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFT 370
D++W +D+GWV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW-PTPARMCQVVDKHQVNILYT 356
Query: 371 APTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWW 427
APTA+R + E + G S SLR L AGE + E W K +++ WW
Sbjct: 357 APTAIRALMAEGDKAIEGTDRS--SLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWW 414
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
QTETG + P PG
Sbjct: 415 QTETGGFMIT------------------PLPG---------------------------- 428
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
+ G F V+ ++ N+G E G +V+ PG TL+ +RF +
Sbjct: 429 AIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQT 487
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
YF+ F Y + D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV
Sbjct: 488 YFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
+G+P KG+ + + E P+
Sbjct: 548 VGIPHAIKGQAIYA----------------YVTLNHGEEPSP------------------ 573
Query: 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
E+ E++ VR+ IGP+A + LP+TRSGK R+ + +A
Sbjct: 574 --------ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 211/714 (29%), Positives = 338/714 (47%), Gaps = 113/714 (15%)
Query: 15 NKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFT---KWF 71
N + C N ++Y Y++SI P++FW + G + W + ++ + S P KW+
Sbjct: 12 NIADRCLINP-EQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
G +N N +DRH++ + A+I + T + ++Y EL V A +L +G+
Sbjct: 71 EDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCG 191
GD V IYMP++PEA V+MLA R+GA+HSV+FGGF+ + R+ + +++I A G
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 192 VEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL-SHR 250
V + + K +++AL+ + +I +R + + G D+ W D + + H+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310
+ A DPL+ILYTSG+TGK PKG+L GG++ A T +++
Sbjct: 250 PEAMNAEDPLFILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHP 297
Query: 311 DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFT 370
D++W +D+GWV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW-PTPARMCQVVDKHQVNILYT 356
Query: 371 APTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWW 427
APTA+R + E + G S SLR L GE + E W K +++ WW
Sbjct: 357 APTAIRALMAEGDKAIEGTDRS--SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 414
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
QTETG + P PG
Sbjct: 415 QTETGGFMIT------------------PLPG---------------------------- 428
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
+ G F V+ ++ N+G E G +V+ PG TL+ +RF +
Sbjct: 429 AIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQT 487
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
YF+ F Y + D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV
Sbjct: 488 YFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
+G+P KG+ + + E P+
Sbjct: 548 VGIPHAIKGQAIYA----------------YVTLNHGEEPSP------------------ 573
Query: 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
E+ E++ VR+ IGP+A + LP+TRSGK R+ + +A
Sbjct: 574 --------ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 211/714 (29%), Positives = 337/714 (47%), Gaps = 113/714 (15%)
Query: 15 NKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFT---KWF 71
N + C N ++Y Y++SI P++FW + G + W + ++ + S P KW+
Sbjct: 12 NIADRCLINP-EQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
G +N N +DRH++ + A+I + T + ++Y EL V A +L +G+
Sbjct: 71 EDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCG 191
GD V IYMP++PEA V+MLA R+GA+HSV+FGGF+ + R+ + +++I A G
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 192 VEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL-SHR 250
V + K +++AL+ + +I +R + + G D+ W D + + H+
Sbjct: 190 VRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310
+ A DPL+ILYTSG+TGK PKG+L GG++ A T +++
Sbjct: 250 PEAMNAEDPLFILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHP 297
Query: 311 DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFT 370
D++W +D+GWV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW-PTPARMCQVVDKHQVNILYT 356
Query: 371 APTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWW 427
APTA+R + E + G S SLR L GE + E W K +++ WW
Sbjct: 357 APTAIRALMAEGDKAIEGTDRS--SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 414
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
QTETG + P PG
Sbjct: 415 QTETGGFMIT------------------PLPG---------------------------- 428
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
+ G F V+ ++ N+G E G +V+ PG TL+ +RF +
Sbjct: 429 AIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQT 487
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
YF+ F Y + D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV
Sbjct: 488 YFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
+G+P KG+ + + E P+
Sbjct: 548 VGIPHAIKGQAIYA----------------YVTLNHGEEPSP------------------ 573
Query: 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
E+ E++ VR+ IGP+A + LP+TRSGK R+ + +A
Sbjct: 574 --------ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 332 bits (851), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 210/714 (29%), Positives = 337/714 (47%), Gaps = 113/714 (15%)
Query: 15 NKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFT---KWF 71
N + C N ++Y Y++SI P++FW + G + W + ++ + S P KW+
Sbjct: 12 NIADRCLINP-EQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
G +N N +DRH++ + A+I + T + ++Y EL V A +L +G+
Sbjct: 71 EDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCG 191
GD V IYMP++PEA V+MLA R+GA+HSV+FGGF+ + R+ + +++I A G
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 192 VEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL-SHR 250
V + + K +++AL+ + +I +R + + G D+ W D + + H+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310
+ A DPL+ILYTSG+TGK PKG+L GG++ A T +++
Sbjct: 250 PEAMNAEDPLFILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHP 297
Query: 311 DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFT 370
D++W +D+GWV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW-PTPARMCQVVDKHQVNILYT 356
Query: 371 APTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWW 427
APTA+R + E + G S SLR L GE + E W K +++ WW
Sbjct: 357 APTAIRALMAEGDKAIEGTDRS--SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 414
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
QTETG + P PG
Sbjct: 415 QTETGGFMIT------------------PLPG---------------------------- 428
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
+ G F V+ ++ N+G E G +V+ PG TL+ +RF +
Sbjct: 429 AIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQT 487
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
YF+ F Y + D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV
Sbjct: 488 YFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
+G+P KG+ + + E P+
Sbjct: 548 VGIPHAIKGQAIYA----------------YVTLNHGEEPSP------------------ 573
Query: 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
E+ E++ V + IGP+A + LP+TRSGK R+ + +A
Sbjct: 574 --------ELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 332 bits (850), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 210/714 (29%), Positives = 337/714 (47%), Gaps = 113/714 (15%)
Query: 15 NKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFT---KWF 71
N + C N ++Y Y++SI P++FW + G + W + ++ + S P KW+
Sbjct: 12 NIADRCLINP-EQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
G +N N +DRH++ + A+I + T + ++Y EL V A +L +G+
Sbjct: 71 EDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCG 191
GD V IYMP++PEA V+MLA R+GA+HSV+FGGF+ + R+ + +++I A G
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 192 VEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL-SHR 250
V + + K +++AL+ + +I +R + + G D+ W D + + H+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310
+ A DPL+ILYTSG+TGK PKG+L GG++ A T +++
Sbjct: 250 PEAMNAEDPLFILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHP 297
Query: 311 DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFT 370
D++W +D+GWV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW-PTPARMCQVVDKHQVNILYT 356
Query: 371 APTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWW 427
APTA+R + E + G S SLR L GE + E W K +++ WW
Sbjct: 357 APTAIRALMAEGDKAIEGTDRS--SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 414
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
QTETG + P PG
Sbjct: 415 QTETGGFMIT------------------PLPG---------------------------- 428
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
+ G F V+ ++ N+G E G +V+ PG TL+ +RF +
Sbjct: 429 AIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQT 487
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
YF+ F Y + D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV
Sbjct: 488 YFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
+G+P KG+ + + E P+
Sbjct: 548 VGIPHAIKGQAIYA----------------YVTLNHGEEPSP------------------ 573
Query: 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
E+ E++ VR+ IGP+A + LP+TRSG R+ + +A
Sbjct: 574 --------ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILRKIA 619
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 331 bits (849), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 210/714 (29%), Positives = 337/714 (47%), Gaps = 113/714 (15%)
Query: 15 NKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFT---KWF 71
N + C N ++Y Y++SI P++FW + G + W + ++ + S P KW+
Sbjct: 12 NIADRCLINP-EQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
G +N N +DRH++ + A+I + T + ++Y EL V A +L +G+
Sbjct: 71 EDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCG 191
GD V IYMP++PEA V+MLA R+GA+HSV+FGGF+ + R+ + +++I A G
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 192 VEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL-SHR 250
V + + K +++AL+ + +I +R + + G D+ W D + + H+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310
+ A DPL+ILYTSG+TGK PKG+L GG++ A T +++
Sbjct: 250 PEAMNAEDPLFILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHP 297
Query: 311 DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFT 370
D++W +D+GWV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW-PTPARMCQVVDKHQVNILYT 356
Query: 371 APTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWW 427
APTA+R + E + G S SLR L GE + E W K +++ WW
Sbjct: 357 APTAIRALMAEGDKAIEGTDRS--SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 414
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
QTETG + P PG
Sbjct: 415 QTETGGFMIT------------------PLPG---------------------------- 428
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
+ G F V+ ++ N+G E G +V+ PG TL+ +RF +
Sbjct: 429 AIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQT 487
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
YF+ F Y + D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV
Sbjct: 488 YFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
+G+P KG+ + + E P+
Sbjct: 548 VGIPHAIKGQAIYA----------------YVTLNHGEEPSP------------------ 573
Query: 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
E+ E++ V + IGP+A + LP+TRSGK R+ + +A
Sbjct: 574 --------ELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 331 bits (848), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 210/714 (29%), Positives = 337/714 (47%), Gaps = 113/714 (15%)
Query: 15 NKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFT---KWF 71
N + C N ++Y Y++SI P++FW + G + W + ++ + S P KW+
Sbjct: 12 NIADRCLINP-EQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
G +N N +DRH++ + A+I + T + ++Y EL V A +L +G+
Sbjct: 71 EDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCG 191
GD V IYMP++PEA V+MLA R+GA+HSV+FGGF+ + + + +++I A G
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEG 189
Query: 192 VEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL-SHR 250
V + + K +++AL+ + +I +R + + G D+ W D + + H+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310
+ A DPL+ILYTSG+TGK PKG+L GG++ A T +++
Sbjct: 250 PEAMNAEDPLFILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHP 297
Query: 311 DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFT 370
D++W +D+GWV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW-PTPARMCQVVDKHQVNILYT 356
Query: 371 APTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWW 427
APTA+R + E + G S SLR L GE + E W K +++ WW
Sbjct: 357 APTAIRALMAEGDKAIEGTDRS--SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 414
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
QTETG + P PG
Sbjct: 415 QTETGGFMIT------------------PLPG---------------------------- 428
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
+ G F V+ ++ N+G E G +V+ PG TL+ +RF +
Sbjct: 429 AIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQT 487
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
YF+ F Y + D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV
Sbjct: 488 YFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
+G+P KG+ + + E P+
Sbjct: 548 VGIPHAIKGQAIYA----------------YVTLNHGEEPSP------------------ 573
Query: 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
E+ E++ VR+ IGP+A + LP+TRSGK R+ + +A
Sbjct: 574 --------ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 215/704 (30%), Positives = 331/704 (47%), Gaps = 116/704 (16%)
Query: 28 YYDAYRKSIEAPESFW-TDVGNMATWSKKWDRIL---DNSDQPFTK---WFVGGEINACY 80
Y +++SIE P F+ + WSK +D++ + +P + WF+ G++NACY
Sbjct: 26 YQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACY 85
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLA-AIGVSAGDRVLI 139
N +DRH + KK A+I + +TY EL E+V +A L ++GV GD V +
Sbjct: 86 NCVDRHALKTPNKK-AIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 144
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR 199
YMP++PEAI+++LA R+GAIHSVVF GF++ L R+ KV+I KV+
Sbjct: 145 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIE 204
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILW-DDALAQRLSHRCVPVEAND 258
K I+++AL + + +++++ D+ W + + + C PV++ D
Sbjct: 205 TKRIVDDALR-ETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSED 263
Query: 259 PLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318
PL++LYTSG+TG PKG+ G++ TM ++ Q+DV++TA
Sbjct: 264 PLFLLYTSGSTG------------APKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAG 311
Query: 319 DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378
D+GW+ GH+Y+ YGPL G ++++EG P P+ S+Y+ +I HKV + APTALR++
Sbjct: 312 DIGWITGHTYVVYGPLLYGCATLVFEGTP-AYPNYSRYWDIIDEHKVTQFYVAPTALRLL 370
Query: 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETGHSI 435
+R DS + +S SLR L GE E W + + +++ +WQTE+G +
Sbjct: 371 KRA-GDSYI-ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL 428
Query: 436 TAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495
G P S PF G D
Sbjct: 429 VTPLAGGVTPMKPG--SASFPFFGIDA--------------------------------- 453
Query: 496 NATHFTSVEVRIIRNDGSECE-PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554
V + N G E H G + VK P T++K R++ Y +PG
Sbjct: 454 ---------VVLDPNTGEELNTSHAEGVLAVKAAW-PSFARTIWKNHDRYLDTYLNPYPG 503
Query: 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT 614
YY T D D++GYI++ R DDV+NV+GHRLST+ +E ++ P V + AV+G +
Sbjct: 504 YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDL 563
Query: 615 KGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSD 674
G+ + K S + T +D
Sbjct: 564 TGQAVAAFVVLKN--------------------------------------KSSWSTATD 585
Query: 675 EE---IGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715
+E I K L VR+ IGP AA KL V LP+TRSGK R+
Sbjct: 586 DELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRR 629
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 140/616 (22%), Positives = 235/616 (38%), Gaps = 139/616 (22%)
Query: 111 TYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+ EL E A L+ A G+ GDRV + +P +PE + +L +R G I
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 170 ARELCARLEHAKPKVIIAASCGV-EPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
+ ++ RL+ +K K I+A + E + V L L +S D + F ++ + E
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNF-KKLLNE 193
Query: 229 AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL 288
A T H CV + + I +TSGT+G P+ S K +
Sbjct: 194 ASTT----------------HHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM 237
Query: 289 RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPD 348
WT + D+ WT SD GW++ P A G + ++
Sbjct: 238 DA--------GWT-----GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH----- 279
Query: 349 RTP--DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHC 406
P DP + + ++ + + AP R++ ++D S Y L+ GE
Sbjct: 280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSS-----YKFPHLQNCVTVGESL 334
Query: 407 DHET-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
ET +NW ++ + + + QTETG + C+ + + PGY G
Sbjct: 335 LPETLENWRAQT-GLDIRESYGQTETGLT----CMVSKTMKIK---------PGYMG--- 377
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
T + +V+II + G+ P G I +
Sbjct: 378 --------------------------------TAASCYDVQIIDDKGNVLPPGTEGDIGI 405
Query: 526 KL-PLPP-GTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVA 583
++ P+ P G S P + F + D G DE+GY R DD+IN +
Sbjct: 406 RVKPIRPIGIFSGYVDNPDKTAANIRGDF---WLLGDRGIKDEDGYFQFMGRADDIINSS 462
Query: 584 GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGK 643
G+R+ S +E+ ++ HP V +TAVI P+P +GE+
Sbjct: 463 GYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV------------------------- 497
Query: 644 LERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTG 703
+K + ++S + + E++ KEL++ V+ P + V
Sbjct: 498 ---------------VKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN 542
Query: 704 LPRTRSGKTARKSIVD 719
LP+T +GK R + D
Sbjct: 543 LPKTVTGKIQRAKLRD 558
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 140/616 (22%), Positives = 235/616 (38%), Gaps = 139/616 (22%)
Query: 111 TYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+ EL E A L+ A G+ GDRV + +P +PE + +L +R G I
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 170 ARELCARLEHAKPKVIIAASCGV-EPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
+ ++ RL+ +K K I+A + E + V L L +S D + F ++ + E
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNF-KKLLNE 193
Query: 229 AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL 288
A T H CV + + I +TSGT+G P+ S K +
Sbjct: 194 ASTT----------------HHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM 237
Query: 289 RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPD 348
WT + D+ WT SD GW++ P A G + ++
Sbjct: 238 DA--------GWT-----GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH----- 279
Query: 349 RTP--DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHC 406
P DP + + ++ + + AP R++ ++D S Y L+ GE
Sbjct: 280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSS-----YKFPHLQNCVTVGESL 334
Query: 407 DHET-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
ET +NW ++ + + + QTETG + C+ + + PGY G
Sbjct: 335 LPETLENWRAQT-GLDIRESYGQTETGLT----CMVSKTMKIK---------PGYMG--- 377
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
T + +V+II + G+ P G I +
Sbjct: 378 --------------------------------TAASCYDVQIIDDKGNVLPPGTEGDIGI 405
Query: 526 KL-PLPP-GTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVA 583
++ P+ P G S P + F + D G DE+GY R DD+IN +
Sbjct: 406 RVKPIRPIGIFSGYVDNPDKTAANIRGDF---WLLGDRGIKDEDGYFQFMGRADDIINSS 462
Query: 584 GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGK 643
G+R+ S +E+ ++ HP V +TAVI P+P +GE+
Sbjct: 463 GYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV------------------------- 497
Query: 644 LERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTG 703
+K + ++S + + E++ KEL++ V+ P + V
Sbjct: 498 ---------------VKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN 542
Query: 704 LPRTRSGKTARKSIVD 719
LP+T +GK R + D
Sbjct: 543 LPKTVTGKIQRAKLRD 558
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 149/674 (22%), Positives = 245/674 (36%), Gaps = 159/674 (23%)
Query: 69 KWFVGGEINACYNAIDRHVERGMAKKVALIH-DSPVTKSIRKVTYAELQEQVSLLAGSLA 127
K V N Y+ +D + R +K+A+I D + I T+ +L+ A
Sbjct: 48 KILVPENFNFAYDVVDVYA-RDSPEKLAMIWCDDYGNEKI--FTFKDLKYYSDKAANFFV 104
Query: 128 AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIA 187
G+ GD V++ + + ML +LGAI R++ R+E A K+I+
Sbjct: 105 KHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVC 164
Query: 188 --------------ASCGVEPNKVVRYK-TILNEALEISSCKPDYCIIFQRRCVEEAELT 232
A CG P K + +L ++ + IF+R E
Sbjct: 165 IAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGE----- 219
Query: 233 PGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVG 292
V + D + ++SGT G P+ + P+G
Sbjct: 220 -------------------VSTKNEDICLVYFSSGTAGFPKMVEHDNT--------YPLG 252
Query: 293 GHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPD 352
+ W N+ D + +T +D GW YG AG +Y+ DR
Sbjct: 253 HILTAKYWQ-----NVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYD--YDRFEA 305
Query: 353 PSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKN 412
+ + + V PT R + +ED + Y+ +L+Y VAGE + E N
Sbjct: 306 KNMLEKA-SKYGVTTFCAPPTIYRFLIKEDL-----SHYNFSTLKYAVVAGEPLNPEVFN 359
Query: 413 WAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNW 472
+ + ++ + QTET V I W
Sbjct: 360 RFLEFTGIKLMEGFGQTET--------------------------------VVTIATFPW 387
Query: 473 LDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKL--PLP 530
++ + P S+ K P ++ ++ DG CE E G IV+ P
Sbjct: 388 MEPK-------PGSIGKPTP---------GYKIELMDRDGRLCEVGEEGEIVINTMEGKP 431
Query: 531 PGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTS 590
G K P+R + + GYY T D + DE+GY++ R DD+I +G+++
Sbjct: 432 VGLFVHYGKDPERTEETWHD---GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPF 488
Query: 591 ALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSL 650
+E ++ HP V + A+ GVP+P +G++ IK I
Sbjct: 489 EVESALIQHPAVLECAITGVPDPVRGQV-----IKATI---------------------- 521
Query: 651 LTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710
VL K Y P S + EL++ V+ P ++ V LP+T SG
Sbjct: 522 ------VLTKDYTPSDS---------LKNELQDHVKNVTAPYKYPRIIEFVPELPKTISG 566
Query: 711 KTARKSIVDMARNK 724
K R I D +++
Sbjct: 567 KIRRVEIRDKDQSQ 580
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 118/528 (22%), Positives = 199/528 (37%), Gaps = 116/528 (21%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++TYA++ + A L A+G++ GDRV + MP E +LGA+ +
Sbjct: 43 RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRL 102
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
AA E+ L + KV+I + P +I R +
Sbjct: 103 AAPEVSFILSDSGSKVVIYGA-------------------------PSAPVIDAIRAQAD 137
Query: 229 AELTPGYDILW--DDALAQRL-----SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSE 281
PG W D+LA+RL V +D L+I+YTSGTTG
Sbjct: 138 ---PPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTG----------- 183
Query: 282 DQPKGILRP-VGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITS 340
PKG++ H A +W ++ ++ D M V + + + + G+T
Sbjct: 184 -HPKGVVHTHESVHSAASSWASTI--DVRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTL 239
Query: 341 VMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLF 400
+ D ++ + +I +V P L +R+ + + L A RY
Sbjct: 240 ISMP-----QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAP----DFRYFI 290
Query: 401 VAGEHC-DHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPG 459
G + K +A K+ V G+++T C G
Sbjct: 291 TGGAPMPEALIKIYAAKNIEVVQ---------GYALTESCGG------------------ 323
Query: 460 YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHE 519
++L+ ++LRK G+ AT FT V VR D H
Sbjct: 324 ------GTLLLS------------EDALRKAGSAGR-ATMFTDVAVR---GDDGVIREHG 361
Query: 520 LGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDV 579
G +V+K + + + P+ + G++ T D G D+ GY+Y+ R D+
Sbjct: 362 EGEVVIKSDI---LLKEYWNRPEATRDAFDN---GWFRTGDIGEIDDEGYLYIKDRLKDM 415
Query: 580 INVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627
I G + + +E V++ P V + AVIG+P+ GEI + + +
Sbjct: 416 IISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQ 463
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 108/526 (20%), Positives = 198/526 (37%), Gaps = 105/526 (19%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TYA+++ +A L IG+ GD +++++P PE +++ L GAI +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
EL + ++ K++I +C E KV + + + PD C+ F +
Sbjct: 111 AELAKHAKASRAKLLITQACYYE--KVKDFARESDVKVMCVDSAPDGCLHFSELTQADEN 168
Query: 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRP 290
P DI DD +A + Y+SGTTG PKG++
Sbjct: 169 EAPQVDISPDDVVA-----------------LPYSSGTTG------------LPKGVMLT 199
Query: 291 VGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRT 350
G I ++A + + ++++ + D+ V + Y + S+M G
Sbjct: 200 HKGLITSVAQQV----DGDNPNLYFHSEDVILCVLPMFHIY-----ALNSIMLCGLRVGA 250
Query: 351 P-------DPSQYYRVIHNHKVN-GLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVA 402
P + +I +KV+ P + + + D D ++ SLR +
Sbjct: 251 PILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD-----KHDLSSLRMIKSG 305
Query: 403 GEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF---PG 459
G E ++ F L + + A CL + + PF PG
Sbjct: 306 GAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKE----------PFDIKPG 355
Query: 460 YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHE 519
G V + +D SL +N P G+ + ++ ND
Sbjct: 356 ACGTVVRNAEMKIVDPETGA------SLPRNQP-GEICIRGDQI-MKGYLND-------- 399
Query: 520 LGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDV 579
P T T+ K G+ T D GY D++ +++ R ++
Sbjct: 400 ----------PEATSRTIDKE-------------GWLHTGDIGYIDDDDELFIVDRLKEL 436
Query: 580 INVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIK 625
I G +++ + LE ++++HP++ D AV+G+ + GE+P +K
Sbjct: 437 IKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 121/515 (23%), Positives = 199/515 (38%), Gaps = 109/515 (21%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
K++YAEL + +A L A G+ GDRV EA+V LATVR G ++ + +
Sbjct: 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAY 87
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE-ALEISSCKPDYCIIFQRRCVE 227
EL + A+PK+++ C +P+K I + + + PD
Sbjct: 88 TLHELDYFITDAEPKIVV---C--DPSKRDGIAAIAAKVGATVETLGPD----------- 131
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
G L D A + + A+D ILYTSGTTG+ +G S D
Sbjct: 132 ------GRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAX--LSHD----- 178
Query: 288 LRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP 347
++A+ + T+ + DDV A + Y +G A ++ G
Sbjct: 179 ------NLASNSLTLVDYWRFTPDDVLIHALPI-------YHTHGLFVASNVTLFARGSX 225
Query: 348 DRTP--DPSQYYRVIHNHKV-NGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGE 404
P DP + + V G+ T T L R K++T + LF++G
Sbjct: 226 IFLPKFDPDKILDLXARATVLXGVPTFYTRLLQSPRLTKETTGHXR--------LFISGS 277
Query: 405 H--CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDG 462
+ W+ K+ + +L + TET + + Y D VP + G PG
Sbjct: 278 APLLADTHREWSAKTGHA-VLERYGXTETNXNTSNP---YDGDRVPG--AVGPALPGVSA 331
Query: 463 KYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGR 522
+ + PE+ K +P+G ++G
Sbjct: 332 RVTD-----------------PET-GKELPRG------------------------DIGX 349
Query: 523 IVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINV 582
I VK P ++ P++ + + G++ T D G DE GY+++ R D++
Sbjct: 350 IEVK---GPNVFKGYWRXPEKTKSEF--RDDGFFITGDLGKIDERGYVHILGRGKDLVIT 404
Query: 583 AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
G + +E + + P V ++AVIGVP GE
Sbjct: 405 GGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGE 439
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 108/525 (20%), Positives = 193/525 (36%), Gaps = 111/525 (21%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+YAE E+ L +L G+ R+ + E + ++A + +G + +
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDY----CI-IFQRRC 225
REL L +KP ++ ++ G++ V+ + + I K DY C+ F +R
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKR- 172
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL-YILYTSGTTGKPQGCSELRSEDQP 284
PGY Q S + V V+ + + I+ +SG+TG P+G +L E+
Sbjct: 173 ----NTPPGY---------QASSFKTVEVDRKEQVALIMNSSGSTGLPKGV-QLTHEN-- 216
Query: 285 KGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV------GHSYICY---GPLA 335
+ ++ +D ++ G V H + + G L
Sbjct: 217 -----------------IVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI 259
Query: 336 AGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395
G VM D + + + ++K + PT ++ + S L +Y +
Sbjct: 260 CGFRVVML-----TKFDEETFLKTLQDYKCTNVILVPTLFAILNK----SELLNKYDLSN 310
Query: 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQ-TETGHSITAHCLGYQHDTVPPKYSTG 454
L + G E + FN+ + + TET +I + P+ G
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII----------ITPE---G 357
Query: 455 LPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSE 514
PG GK V + +D +
Sbjct: 358 DDKPGASGKVVPLFKAKVID----------------------------------LDTKKS 383
Query: 515 CEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTA 574
P+ G + VK P+ M P+ ++ + G+ T D GYYDE + ++
Sbjct: 384 LGPNRRGEVCVKGPM---LMKGYVNNPEATKELIDEE--GWLHTGDIGYYDEEKHFFIVD 438
Query: 575 RDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
R +I G+++ + LE V+L HP + D V GVP+P GE+P
Sbjct: 439 RLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 107/525 (20%), Positives = 193/525 (36%), Gaps = 111/525 (21%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+YAE E+ L +L G+ R+ + E + ++A + +G + +
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDY----CI-IFQRRC 225
REL L +KP ++ ++ G++ V+ + + I K DY C+ F +R
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKR- 172
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL-YILYTSGTTGKPQGCSELRSEDQP 284
PG+ Q S + V V+ + + I+ +SG+TG P+G +L E+
Sbjct: 173 ----NTPPGF---------QASSFKTVEVDRKEQVALIMNSSGSTGLPKGV-QLTHEN-- 216
Query: 285 KGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV------GHSYICY---GPLA 335
+ ++ +D ++ G V H + + G L
Sbjct: 217 -----------------IVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI 259
Query: 336 AGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395
G VM D + + + ++K + PT ++ + S L +Y +
Sbjct: 260 CGFRVVML-----TKFDEETFLKTLQDYKCTSVILVPTLFAILNK----SELLNKYDLSN 310
Query: 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQ-TETGHSITAHCLGYQHDTVPPKYSTG 454
L + G E + FN+ + + TET +I + P+ G
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII----------ITPE---G 357
Query: 455 LPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSE 514
PG GK V + +D +
Sbjct: 358 DDKPGASGKVVPLFKAKVID----------------------------------LDTKKS 383
Query: 515 CEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTA 574
P+ G + VK P+ M P+ ++ + G+ T D GYYDE + ++
Sbjct: 384 LGPNRRGEVCVKGPM---LMKGYVNNPEATKELIDEE--GWLHTGDIGYYDEEKHFFIVD 438
Query: 575 RDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
R +I G+++ + LE V+L HP + D V GVP+P GE+P
Sbjct: 439 RLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 107/530 (20%), Positives = 195/530 (36%), Gaps = 111/530 (20%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+YAE E+ L +L G+ R+ + E + ++A + +G + +
Sbjct: 54 SYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDY----CI-IFQRRC 225
REL L +KP ++ ++ G++ V+ + + I K DY C+ F +R
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKR- 172
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL-YILYTSGTTGKPQGCSELRSEDQP 284
PG+ Q S + V V+ + + I+ +SG+TG P+G +L E+
Sbjct: 173 ----NTPPGF---------QASSFKTVEVDRKEQVALIMNSSGSTGLPKGV-QLTHEN-- 216
Query: 285 KGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV------GHSYICY---GPLA 335
+ ++ +D ++ G V H + + G L
Sbjct: 217 -----------------IVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI 259
Query: 336 AGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395
G VM D + + + ++K + PT ++ + S L +Y +
Sbjct: 260 CGFRVVML-----TKFDEETFLKTLQDYKCTSVILVPTLFAILNK----SELLNKYDLSN 310
Query: 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQ-TETGHSITAHCLGYQHDTVPPKYSTG 454
L + G E + FN+ + + TET +I + P+ G
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII----------ITPE---G 357
Query: 455 LPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSE 514
PG GK V + +D +
Sbjct: 358 DDKPGASGKVVPLFKAKVID----------------------------------LDTKKS 383
Query: 515 CEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTA 574
P+ G + VK P+ M P+ ++ + G+ T D GYYDE + ++
Sbjct: 384 LGPNRRGEVCVKGPM---LMKGYVNNPEATKELIDEE--GWLHTGDIGYYDEEKHFFIVD 438
Query: 575 RDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYI 624
R +I G+++ + LE V+L HP + D V GVP+P GE+P + +
Sbjct: 439 RLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVV 488
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 133/593 (22%), Positives = 221/593 (37%), Gaps = 113/593 (19%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+Y EL + LA +G+ DRV++ +P I E + A RLGA+ +
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 171 RELCARLEHAKPK--VIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
E+ E A+ +I A G + Y+++ A ++ S P I E
Sbjct: 112 SEITYFCEFAEAAAYIIPDAYSGFD------YRSL---ARQVQSKLPTLKNIIV--AGEA 160
Query: 229 AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL 288
E P D+ + + V+++D ++ + G+TG K I
Sbjct: 161 EEFLPLEDLHTEPV-------KLPEVKSSDVAFLQLSGGSTG------------LSKLIP 201
Query: 289 RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP- 347
R +I +L ++ V + + V+ A M H+Y P G+ V+Y G
Sbjct: 202 RTHDDYIYSLKRSVEVCW-LDHSTVYLAALPMA----HNYPLSSP---GVLGVLYAGGRV 253
Query: 348 --DRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
+P P + +I KV P V D+ + SL+ L V G
Sbjct: 254 VLSPSPSPDDAFPLIEREKVTITALVPPLAMVW----MDAASSRRDDLSSLQVLQVGGAK 309
Query: 406 CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
E + F T+ + E
Sbjct: 310 FSAEAARRVKAVFGCTLQQVFGMAE----------------------------------- 334
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
+V LD PE + N +G+ + + E R+ + + +P E G ++
Sbjct: 335 GLVNYTRLDD--------PEEIIVNT-QGKPMSPYD--ESRVWDDHDRDVKPGETGHLLT 383
Query: 526 KLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGH 585
+ P T+ YKA + FT+ G+Y T D +GYI V R D IN G
Sbjct: 384 RGPY---TIRGYYKA-EEHNAASFTE-DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 586 RLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLE 645
+++ +E+ +L+HP V D A++ +P+ GE C++I IP D+ + + E
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS-CVFI---IPRDEAPKAAELKAFLRE 494
Query: 646 RPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP--IAAFK 696
R + P RV P + +GK K+ +REAI +A FK
Sbjct: 495 RGLAAYKIPDRVEFVESFPQTG---------VGKVSKKALREAISEKLLAGFK 538
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 132/593 (22%), Positives = 218/593 (36%), Gaps = 113/593 (19%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+Y EL + LA +G+ DRV++ +P I E + A RLGA+ +
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 171 RELCARLEHAKPK--VIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
E+ E A+ +I A G + Y+++ A ++ S P I E
Sbjct: 112 SEITYFCEFAEAAAYIIPDAYSGFD------YRSL---ARQVQSKLPTLKNIIV--AGEA 160
Query: 229 AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL 288
E P D+ + + V+++D ++ + G+TG K I
Sbjct: 161 EEFLPLEDLHTEPV-------KLPEVKSSDVAFLQLSGGSTG------------LSKLIP 201
Query: 289 RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP- 347
R +I +L ++ V + + V+ A H+Y P G+ V+Y G
Sbjct: 202 RTHDDYIYSLKRSVEVCW-LDHSTVYLAA----LPXAHNYPLSSP---GVLGVLYAGGRV 253
Query: 348 --DRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
+P P + +I KV P V D+ + SL+ L V G
Sbjct: 254 VLSPSPSPDDAFPLIEREKVTITALVPPLAXVW----XDAASSRRDDLSSLQVLQVGGAK 309
Query: 406 CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
E + F T+ + E
Sbjct: 310 FSAEAARRVKAVFGCTLQQVFGXAE----------------------------------- 334
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
+V LD PE + N +G+ + + E R+ + + +P E G ++
Sbjct: 335 GLVNYTRLDD--------PEEIIVNT-QGKPXSPYD--ESRVWDDHDRDVKPGETGHLLT 383
Query: 526 KLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGH 585
+ P T+ YKA + FT+ G+Y T D +GYI V R D IN G
Sbjct: 384 RGPY---TIRGYYKA-EEHNAASFTE-DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 586 RLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLE 645
+++ +E+ +L+HP V D A + P+ GE C++I IP D+ + + E
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERS-CVFI---IPRDEAPKAAELKAFLRE 494
Query: 646 RPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP--IAAFK 696
R + P RV P + +GK K+ +REAI +A FK
Sbjct: 495 RGLAAYKIPDRVEFVESFPQTG---------VGKVSKKALREAISEKLLAGFK 538
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 153/376 (40%), Gaps = 56/376 (14%)
Query: 92 AKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSM 151
A K A I D+ T TY EL+E+ A +L +GV +R+L+ M V+
Sbjct: 37 AGKTAYIDDTGST------TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90
Query: 152 LATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEIS 211
L + G + V + L H+ + +IA+ V+ + +ALE
Sbjct: 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQN---------VTQALE-- 139
Query: 212 SCKPDYC-IIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTG 270
S + D C +I + E L P ++ L D A + +D + LY+SG+TG
Sbjct: 140 SAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAAT---GCDDIAFWLYSSGSTG 196
Query: 271 KPQGCSELRSEDQPKGILRPVGGHIATLAWTMSV----IYNMGQDDVWWTASDMGWVVGH 326
KP+G V H A L WT + I + ++DV ++A+ + + G
Sbjct: 197 KPKGT---------------VHTH-ANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGL 240
Query: 327 SYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386
PL+ G T+++ +P T D + + R++ H+ + PT +
Sbjct: 241 GNGLTFPLSVGATAILMAERP--TAD-AIFARLV-EHRPTVFYGVPT---LYANMLVSPN 293
Query: 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG-YQHD 445
L A+ ++R AGE E F +L+ TE H ++ G ++
Sbjct: 294 LPARADV-AIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYG 352
Query: 446 TVPPKYSTGLPFPGYD 461
T TG P PGY+
Sbjct: 353 T------TGRPVPGYE 362
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 43/148 (29%)
Query: 567 NGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626
NG R DD++ V+G +S +E V++ H V + AV+GV
Sbjct: 419 NGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDH-------------- 464
Query: 627 RIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVR 686
GL+ T VL + + P E + +ELK V+
Sbjct: 465 ---------GGLVK-----------TRAFVVLKREFAP---------SEILAEELKAFVK 495
Query: 687 EAIGPIAAFKLSTSVTGLPRTRSGKTAR 714
+ + P + V LP+T +GK R
Sbjct: 496 DRLAPHKYPRDIVFVDDLPKTATGKIQR 523
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 99/527 (18%), Positives = 199/527 (37%), Gaps = 103/527 (19%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TYAE E LA ++ G++ R+++ + + +L + +G + +
Sbjct: 56 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYN 115
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
REL + ++P V+ + G++ V+ K + + + I K DY +
Sbjct: 116 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 175
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDP----LYILYTSGTTGKPQGCS------ELR 279
L PG++ + VP E+ D I+ +SG+TG P+G + +R
Sbjct: 176 HLPPGFN-----------EYDFVP-ESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVR 223
Query: 280 SEDQPKGILRPVGGHIATLAWTMSVI-YNMGQDDVWWTASDMGWVVGHSYICYGPLAAGI 338
I G IA +SV+ ++ G + + +G+++ +
Sbjct: 224 FSHARDPIF---GNQIAPDTAILSVVPFHHG----FGMFTTLGYLISGFRVV-------- 268
Query: 339 TSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRY 398
+MY + + + R + ++K+ PT + + STL +Y +L
Sbjct: 269 --LMYRFEEEL------FLRSLQDYKIQSALLVPTLFSFLAK----STLIDKYDLSNLHE 316
Query: 399 LFVAGEHCDHETKNWAEKSFNVTMLNHWWQ-TETGHSITAHCLGYQHDTVPPKYSTGLPF 457
+ G E K F++ + + TET +I G D P +PF
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKG---DDKPGAVGKVVPF 373
Query: 458 PGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEP 517
++ K V++ + G
Sbjct: 374 --FEAKVVDL------------------------------------------DTGKTLGV 389
Query: 518 HELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDD 577
++ G + V+ P+ MS P+ + G+ + D Y+DE+ + ++ R
Sbjct: 390 NQRGELSVRGPM---IMSGYVNNPEATNALIDKD--GWLHSGDIAYWDEDEHFFIVDRLK 444
Query: 578 DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYI 624
+I G +++ + LE ++L HP++ D V G+P+ GE+P + +
Sbjct: 445 SLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVV 491
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 89/218 (40%), Gaps = 49/218 (22%)
Query: 501 TSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG--YYD 557
+ +E+++I DG E E G IV++ P +K + + ++ G ++
Sbjct: 363 SDIELKVISLEDGRELGVGESGEIVIR---GPNIFKGYWKREKENQECWWYDEKGRKFFR 419
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
T D G+ DE G+++ R +VI G+ ++ LE ++ H V D AVIG P+ GE
Sbjct: 420 TGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGE 479
Query: 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEI 677
+P +++KP Y + DEE
Sbjct: 480 VPKAF----------------------------------IVLKPE------YRGKVDEE- 498
Query: 678 GKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715
++ E VRE I + V LPRT SGK R+
Sbjct: 499 --DIIEWVRERISGYKRVREVEFVEELPRTASGKLLRR 534
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+ + D YYD++GY ++ R +I G+++ + LE ++L HP + D V G+P+P
Sbjct: 451 GWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDP 510
Query: 614 TKGEIPFCLYI 624
GE+P + +
Sbjct: 511 DAGELPAAVVV 521
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 109/538 (20%), Positives = 195/538 (36%), Gaps = 117/538 (21%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY+++ +A + +GV+ D V++ +P PE ++S LA GA + F
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCK--------PDYCIIFQ 222
E+ + + + K+II E V + K + N+ + C P+ C+ F
Sbjct: 150 AEIAKQAKASNTKLII-----TEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFT 204
Query: 223 ---RRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELR 279
+ E +E+ +I DD +A + Y+SGTTG P+G L
Sbjct: 205 ELTQSTTEASEVIDSVEISPDDVVA-----------------LPYSSGTTGLPKGVM-LT 246
Query: 280 SEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGIT 339
+ + + V G L + DDV M + + I L G
Sbjct: 247 HKGLVTSVAQQVDGENPNLYFH--------SDDVILCVLPMFHIYALNSIMLCGLRVGAA 298
Query: 340 SVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYL 399
++ + + +I KV P + I + S+ +Y S+R +
Sbjct: 299 ILIMPKF-----EINLLLELIQRCKVTVAPMVPPIVLAIAK----SSETEKYDLSSIRVV 349
Query: 400 FVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFP 458
E ++ F N + + TE G + A LG+ + PFP
Sbjct: 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG-PVLAMSLGFAKE----------PFP 398
Query: 459 GYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEP 517
V G T + E++I+ D G
Sbjct: 399 --------------------------------VKSGACGTVVRNAEMKIVDPDTGDSLSR 426
Query: 518 HELGRIVVK--------LPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGY 569
++ G I ++ L P T T+ K G+ T D G D++
Sbjct: 427 NQPGEICIRGHQIMKGYLNNPAATAETIDK-------------DGWLHTGDIGLIDDDDE 473
Query: 570 IYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627
+++ R ++I G +++ + LE +++ HPD+ D AV+ + E GE+P +K +
Sbjct: 474 LFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSK 531
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 98/529 (18%), Positives = 196/529 (37%), Gaps = 107/529 (20%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TYAE E LA ++ G++ R+++ + + +L + +G + +
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
REL + ++P V+ + G++ V+ K + + + I K DY +
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 170
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDP----LYILYTSGTTGKPQG--------CSE 277
L PG++ + VP E+ D I+ +SG+TG P+G C
Sbjct: 171 HLPPGFN-----------EYDFVP-ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVR 218
Query: 278 LRSEDQPKGILRPVGGHIATLAWTMSVI-YNMGQDDVWWTASDMGWVVGHSYICYGPLAA 336
P G I +SV+ ++ G + + +G+++ +
Sbjct: 219 FSHARDPI-----FGNQIIPDTAILSVVPFHHG----FGMFTTLGYLICGFRVV------ 263
Query: 337 GITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396
+MY + + + R + ++K+ PT + STL +Y +L
Sbjct: 264 ----LMYRFEEEL------FLRSLQDYKIQSALLVPTLFSFFAK----STLIDKYDLSNL 309
Query: 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQ-TETGHSITAHCLGYQHDTVPPKYSTGL 455
+ G E K F++ + + TET +I G D P +
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG---DDKPGAVGKVV 366
Query: 456 PFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSEC 515
PF ++ K V++ + G
Sbjct: 367 PF--FEAKVVDL------------------------------------------DTGKTL 382
Query: 516 EPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575
++ G + V+ P+ MS P+ + G+ + D Y+DE+ + ++ R
Sbjct: 383 GVNQRGELCVRGPM---IMSGYVNNPEATNAL--IDKDGWLHSGDIAYWDEDEHFFIVDR 437
Query: 576 DDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYI 624
+I G++++ + LE ++L HP++ D V G+P+ GE+P + +
Sbjct: 438 LKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVV 486
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 98/529 (18%), Positives = 196/529 (37%), Gaps = 107/529 (20%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TYAE E LA ++ G++ R+++ + + +L + +G + +
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
REL + ++P V+ + G++ V+ K + + + I K DY +
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 170
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDP----LYILYTSGTTGKPQG--------CSE 277
L PG++ + VP E+ D I+ +SG+TG P+G C
Sbjct: 171 HLPPGFN-----------EYDFVP-ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVR 218
Query: 278 LRSEDQPKGILRPVGGHIATLAWTMSVI-YNMGQDDVWWTASDMGWVVGHSYICYGPLAA 336
P G I +SV+ ++ G + + +G+++ +
Sbjct: 219 FSHARDPI-----FGNQIIPDTAILSVVPFHHG----FGMFTTLGYLICGFRVV------ 263
Query: 337 GITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396
+MY + + + R + ++K+ PT + STL +Y +L
Sbjct: 264 ----LMYRFEEEL------FLRSLQDYKIQSALLVPTLFSFFAK----STLIDKYDLSNL 309
Query: 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQ-TETGHSITAHCLGYQHDTVPPKYSTGL 455
+ G E K F++ + + TET +I G D P +
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG---DDKPGAVGKVV 366
Query: 456 PFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSEC 515
PF ++ K V++ + G
Sbjct: 367 PF--FEAKVVDL------------------------------------------DTGKTL 382
Query: 516 EPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575
++ G + V+ P+ MS P+ + G+ + D Y+DE+ + ++ R
Sbjct: 383 GVNQRGELCVRGPM---IMSGYVNNPEATNAL--IDKDGWLHSGDIAYWDEDEHFFIVDR 437
Query: 576 DDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYI 624
+I G++++ + LE ++L HP++ D V G+P+ GE+P + +
Sbjct: 438 LKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVV 486
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 98/529 (18%), Positives = 196/529 (37%), Gaps = 107/529 (20%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TYAE E LA ++ G++ R+++ + + +L + +G + +
Sbjct: 56 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 115
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
REL + ++P V+ + G++ V+ K + + + I K DY +
Sbjct: 116 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 175
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDP----LYILYTSGTTGKPQG--------CSE 277
L PG++ + VP E+ D I+ +SG+TG P+G C
Sbjct: 176 HLPPGFN-----------EYDFVP-ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVR 223
Query: 278 LRSEDQPKGILRPVGGHIATLAWTMSVI-YNMGQDDVWWTASDMGWVVGHSYICYGPLAA 336
P G I +SV+ ++ G + + +G+++ +
Sbjct: 224 FSHARDPI-----FGNQIIPDTAILSVVPFHHG----FGMFTTLGYLICGFRVV------ 268
Query: 337 GITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396
+MY + + + R + ++K+ PT + STL +Y +L
Sbjct: 269 ----LMYRFEEEL------FLRSLQDYKIQSALLVPTLFSFFAK----STLIDKYDLSNL 314
Query: 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQ-TETGHSITAHCLGYQHDTVPPKYSTGL 455
+ G E K F++ + + TET +I G D P +
Sbjct: 315 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG---DDKPGAVGKVV 371
Query: 456 PFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSEC 515
PF ++ K V++ + G
Sbjct: 372 PF--FEAKVVDL------------------------------------------DTGKTL 387
Query: 516 EPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575
++ G + V+ P+ MS P+ + G+ + D Y+DE+ + ++ R
Sbjct: 388 GVNQRGELCVRGPM---IMSGYVNNPEATNAL--IDKDGWLHSGDIAYWDEDEHFFIVDR 442
Query: 576 DDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYI 624
+I G++++ + LE ++L HP++ D V G+P+ GE+P + +
Sbjct: 443 LKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVV 491
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
EV + +G+ E+GR++ + P T YK+PQ + G+Y + D
Sbjct: 366 EVWVADAEGNPLPQGEVGRLMTRGPY---TFRGYYKSPQHNASAFDAN--GFYCSGDLIS 420
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623
D GYI V R+ D IN G +++ +E+++L HP V A++ + + GE C Y
Sbjct: 421 IDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGE-KSCAY 479
Query: 624 IKKRIPL 630
+ + PL
Sbjct: 480 LVVKEPL 486
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 133/382 (34%), Gaps = 111/382 (29%)
Query: 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW-W 315
DP ++YTSGTTG P+G R LA T+ + D W W
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRR----------------ALATTLDALA-----DAWQW 193
Query: 316 TASDM-----------GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHK 364
T D+ G V+G GPL G SV + G+ + N
Sbjct: 194 TGEDVLVQGLPLFHVHGLVLG----ILGPLRRG-GSVRHLGRFSTEGAAREL-----NDG 243
Query: 365 VNGLFTAPTAL-RVIRREDKDSTLGAQYSTDSLRYLFVAGEHC----DHETKNWAEKSFN 419
LF PT R+ D L + L V+G DHE A
Sbjct: 244 ATMLFGVPTMYHRIAETLPADPELAKALAG---ARLLVSGSAALPVHDHERIAAATGR-- 298
Query: 420 VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHC 479
++ + TET + + D P + G+P PG
Sbjct: 299 -RVIERYGMTETLMNTSVRA-----DGEPRAGTVGVPLPG-------------------- 332
Query: 480 VRILPESLRKNVPKGQNATHFTSVEVRIIRNDG---SECEPHELGRIVVKLPLPPGTMST 536
VE+R++ DG + + +G I V+ P + T
Sbjct: 333 -----------------------VELRLVEEDGTPIAALDGESVGEIQVRGP----NLFT 365
Query: 537 LYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD-DDVINVAGHRLSTSALEDV 595
Y FT+ G++ T D D +GY+ + R D+I G+++ +E+
Sbjct: 366 EYLNRPDATAAAFTED-GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENA 424
Query: 596 VLSHPDVGDTAVIGVPEPTKGE 617
+L HP+V + AV G P+P GE
Sbjct: 425 LLEHPEVREAAVTGEPDPDLGE 446
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D +DE GY+ + R D+I G +S+ LE+ ++ HP V + AV+ +P P
Sbjct: 412 GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHP 471
Query: 614 TKGEIPFCLYIKK 626
E P + + +
Sbjct: 472 KWQERPLAVVVPR 484
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 19/172 (11%)
Query: 104 TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163
T + + TYAE+ ++ L G L A+GV GDRV + + A +GA+
Sbjct: 42 TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT 101
Query: 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQR 223
+ +E+ L HA+ KV++ +PN + + I E + + ++
Sbjct: 102 ANPRLSPKEIAYILNHAEDKVLL-----FDPNLLPLVEAIRGELKTVQ-----HFVVMDE 151
Query: 224 RCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
+ E GY + +++AL + VP A + YT+GTTG P+G
Sbjct: 152 KAPE------GY-LAYEEALGEEADPVRVPERAA--CGMAYTTGTTGLPKGV 194
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 35/173 (20%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++TYA++ + A L A+G++ GDRV + MP E +LGA+ +
Sbjct: 29 RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRL 88
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
AA E+ L + KV+I + P +I R +
Sbjct: 89 AAPEVSFILSDSGSKVVIYGA-------------------------PSAPVIDAIRAQAD 123
Query: 229 AELTPGYDILW--DDALAQRL-----SHRCVPVEANDPLYILYTSGTTGKPQG 274
PG W D+LA+RL V +D L+I+YTSGTTG P+G
Sbjct: 124 ---PPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKG 173
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 31/176 (17%)
Query: 100 DSP-VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158
D+P +T S + ++Y EL E+ + +A L G G V +Y E ++ +L ++ G
Sbjct: 479 DAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG 538
Query: 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYC 218
A + V + L + AA+C ++ ++ + +A E+
Sbjct: 539 AAYLPVDPKLPEDRISYMLADS------AAAC------LLTHQEMKEQAAELPYTGTTLF 586
Query: 219 IIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
I Q R E+A S ++ NDP YI+YTSGTTGKP+G
Sbjct: 587 IDDQTRFEEQA------------------SDPATAIDPNDPAYIMYTSGTTGKPKG 624
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 528 PLPPGTMSTLYKAPQRFMKIYFTKFP--------GYYDTMDAGYYDENGYIYVTAR--DD 577
PLPPG + + K Y+ G++ T D G +D +GY++ R +
Sbjct: 341 PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEK 400
Query: 578 DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
++I G + + +E + HP + D VIGVP+P E
Sbjct: 401 ELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSE 440
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 125/315 (39%), Gaps = 59/315 (18%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
+++Y L +A +L A GV GDRV + M EAIV++LA ++ GA + V
Sbjct: 60 RISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPGAEAIVAILAILKCGAAYVPV---- 115
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
R +R + +A G EP++ ++ A ++ CK +
Sbjct: 116 DLRNPVSRSDFILADSGASALIG-EPHEGCAVTRVVRTA-AVAECK-------------D 160
Query: 229 AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL 288
AE P ++ P A D Y++YTSGTTG P+G
Sbjct: 161 AEPGP-------------VTGAPGP-GAEDMAYVIYTSGTTGNPKGV------------- 193
Query: 289 RPV--GGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGK 346
PV +A LA SV ++ DD W + + + +G + G V+
Sbjct: 194 -PVRHANVLALLAGAPSV-FDFSGDDRWLLFHSLSFDF-SVWEIWGAFSTGAELVVLPHW 250
Query: 347 PDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHC 406
RTP+ QY VI + V + PTA + ++ + LRY+ GE
Sbjct: 251 AARTPE--QYLAVIIDRGVTVINQTPTAFLAL----TEAAVRGGRDVSGLRYVIFGGEKL 304
Query: 407 DHET-KNWAEKSFNV 420
+ WA K+F +
Sbjct: 305 TAPMLRPWA-KAFGL 318
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 105/518 (20%), Positives = 179/518 (34%), Gaps = 113/518 (21%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
VAL+H++ ++TY L E+ + LA L +GV+ G V +++ + +V++LA
Sbjct: 92 VALLHEA------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAV 145
Query: 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCK 214
++ G ++++ F L LE +++ + ++ T+ E
Sbjct: 146 LKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRP--LSGRLTGTTTLYVE-------- 195
Query: 215 PDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
D DA A L+ P D +++TSG+TG+
Sbjct: 196 ---------------------DEAASDAPAGNLATGVGP---EDVACVMFTSGSTGR--- 228
Query: 275 CSELRSEDQPKGILRPVGGHIATLAWTMSVIY-NMGQDDVWWTASDMGWVVGHSYICYGP 333
PKG++ P H A + Y G D+V+ S + W +G
Sbjct: 229 ---------PKGVMSP---HRALTGTYLGQDYAGFGPDEVFLQCSPVSWDA-FGLELFGA 275
Query: 334 LAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393
L G V+ G+ PDP + ++ H V L + + + E ++ G
Sbjct: 276 LLFGARCVLQSGQ---NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEG----- 327
Query: 394 DSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYST 453
+RY GE A + L + + T H D
Sbjct: 328 --VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPI 385
Query: 454 GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGS 513
G+P G RA+ +L + L+ P A
Sbjct: 386 GVPLAGK---------------RAY---VLDDDLK---PAANGA---------------- 408
Query: 514 ECEPHELGRI-VVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG--YYDTMDAGYYDENGYI 570
LG + V L G +S +RF+ F G Y T D +G +
Sbjct: 409 ------LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVL 462
Query: 571 YVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
R DD + + G R+ +E ++ HP V AV+
Sbjct: 463 EYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVL 500
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 124/327 (37%), Gaps = 42/327 (12%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++T+AEL+ +V +A L A G+ RV + P + ++++LA RLGA+ +++
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
+ EL ++ + + A + + + + S IIF V +
Sbjct: 89 KSAELAELIKRGEXTAAVIAVG----------RQVADAIFQSGSGA---RIIFLGDLVRD 135
Query: 229 AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL 288
E Y +D QR E P +I YTSGTTG P+ I+
Sbjct: 136 GE-PYSYGPPIEDP--QR--------EPAQPAFIFYTSGTTGLPKAA-----------II 173
Query: 289 RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPD 348
L + V G+ +V + VVG + LA T V+ E
Sbjct: 174 PQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVE---- 229
Query: 349 RTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDH 408
P +++ +V LF PT L + + G+ DSLR++ AG
Sbjct: 230 -EFRPVDALQLVQQEQVTSLFATPTHLDAL--AAAAAHAGSSLKLDSLRHVTFAGATXPD 286
Query: 409 ETKNWAEKSFNVTMLNHWWQTETGHSI 435
+ +N + TE +S+
Sbjct: 287 AVLETVHQHLPGEKVNIYGTTEAXNSL 313
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y T D + G + + R DD I G + S +E V+ + P V + VIG+ +
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 614 TKGE 617
G+
Sbjct: 439 RWGQ 442
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 123/328 (37%), Gaps = 44/328 (13%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++T+AEL+ +V +A L A G+ RV + P + ++++LA RLGA+ +++
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 169 AARELCARLEHAK-PKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ EL ++ + +IA V A I IIF V
Sbjct: 89 KSAELAELIKRGEMTAAVIAVGRQV--------------ADAIFQSGSGARIIFLGDLVR 134
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
+ E Y +D QR E P +I YTSGTTG P+ I
Sbjct: 135 DGE-PYSYGPPIEDP--QR--------EPAQPAFIFYTSGTTGLPKAA-----------I 172
Query: 288 LRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP 347
+ L + V G+ +V + VVG + LA T V+ E
Sbjct: 173 IPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--- 229
Query: 348 DRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCD 407
P +++ +V LF PT L + + G+ DSLR++ AG
Sbjct: 230 --EFRPVDALQLVQQEQVTSLFATPTHLDAL--AAAAAHAGSSLKLDSLRHVTFAGATMP 285
Query: 408 HETKNWAEKSFNVTMLNHWWQTETGHSI 435
+ +N + TE +S+
Sbjct: 286 DAVLETVHQHLPGEKVNAYGTTEAMNSL 313
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y T D + G + + R DD+I G + S +E V+ + P V + VIG+ +
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 614 TKGE 617
G+
Sbjct: 439 RWGQ 442
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 123/328 (37%), Gaps = 44/328 (13%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++T+AEL+ +V +A L A G+ RV + P + ++++LA RLGA+ +++
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 169 AARELCARLEHAK-PKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ EL ++ + +IA V A I IIF V
Sbjct: 89 KSAELAELIKRGEMTAAVIAVGRQV--------------ADAIFQSGSGARIIFLGDLVR 134
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
+ E Y +D QR E P +I YTSGTTG P+ I
Sbjct: 135 DGE-PYSYGPPIEDP--QR--------EPAQPAFIFYTSGTTGLPKAA-----------I 172
Query: 288 LRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP 347
+ L + V G+ +V + VVG + LA T V+ E
Sbjct: 173 IPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--- 229
Query: 348 DRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCD 407
P +++ +V LF PT L + + G+ DSLR++ AG
Sbjct: 230 --EFRPVDALQLVQQEQVTSLFATPTHLDAL--AAAAAHAGSSLKLDSLRHVTFAGATMP 285
Query: 408 HETKNWAEKSFNVTMLNHWWQTETGHSI 435
+ +N + TE +S+
Sbjct: 286 DAVLETVHQHLPGEKVNGYGTTEAMNSL 313
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y T D + G + + R DD+I G + S +E V+ + P V + VIG+ +
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 614 TKGE 617
G+
Sbjct: 439 RWGQ 442
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 126/327 (38%), Gaps = 42/327 (12%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++T+AEL+ +V +A L A G+ RV + P + ++++LA RLGA+ +++
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
+ EL ++ + + AA V + + + + S IIF V +
Sbjct: 89 KSAELAELIKRGE---MTAAVIAVG-------RQVADAIFQSGSGA---RIIFLGDLVRD 135
Query: 229 AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL 288
E Y +D QR E P +I YTSGTTG P+ I+
Sbjct: 136 GE-PYSYGPPIEDP--QR--------EPAQPAFIFYTSGTTGLPKAA-----------II 173
Query: 289 RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPD 348
L + V G+ +V + VVG + LA T V+ E
Sbjct: 174 PQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE---- 229
Query: 349 RTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDH 408
P +++ +V LF PT L + + G+ DSLR++ AG
Sbjct: 230 -EFRPVDALQLVQQEQVTSLFATPTHLDAL--AAAAAHAGSSLKLDSLRHVTFAGATMPD 286
Query: 409 ETKNWAEKSFNVTMLNHWWQTETGHSI 435
+ +N + TE +S+
Sbjct: 287 AVLETVHQHLPGEKVNIYGTTEAMNSL 313
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y T D + G + + R D+I G + S +E V+ + P V + VIG+ +
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 614 TKGE 617
G+
Sbjct: 439 RWGQ 442
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 123/328 (37%), Gaps = 44/328 (13%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++T+AEL+ +V +A L A G+ RV + P + ++++LA RLGA+ +++
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 169 AARELCARLEHAK-PKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ EL ++ + +IA V A I IIF V
Sbjct: 89 KSAELAELIKRGEMTAAVIAVGRQV--------------ADAIFQSGSGARIIFLGDLVR 134
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
+ E Y +D QR E P +I YTSGTTG P+ I
Sbjct: 135 DGE-PYSYGPPIEDP--QR--------EPAQPAFIFYTSGTTGLPKAA-----------I 172
Query: 288 LRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP 347
+ L + V G+ +V + VVG + LA T V+ E
Sbjct: 173 IPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIE--- 229
Query: 348 DRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCD 407
P +++ +V LF PT L + + G+ DSLR++ AG
Sbjct: 230 --EFRPVDALQLVQQEQVTSLFATPTHLDAL--AAAAAHAGSSLKLDSLRHVTFAGATMP 285
Query: 408 HETKNWAEKSFNVTMLNHWWQTETGHSI 435
+ +N + TE +S+
Sbjct: 286 DAVLETVHQHLPGEKVNIYGTTEAMNSL 313
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y T D + G + + R DD+I G + S +E V+ + P V + VIG+ +
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 614 TKGE 617
G+
Sbjct: 439 RWGQ 442
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 123/328 (37%), Gaps = 44/328 (13%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++T+AEL+ +V +A L A G+ RV + P + ++++LA RLGA+ +++
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 169 AARELCARLEHAK-PKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ EL ++ + +IA V A I IIF V
Sbjct: 89 KSAELAELIKRGEMTAAVIAVGRQV--------------ADAIFQSGSGARIIFLGDLVR 134
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
+ E Y +D QR E P +I YTSGTTG P+ I
Sbjct: 135 DGE-PYSYGPPIEDP--QR--------EPAQPAFIFYTSGTTGLPKAA-----------I 172
Query: 288 LRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP 347
+ L + V G+ +V + VVG + LA T V+ E
Sbjct: 173 IPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--- 229
Query: 348 DRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCD 407
P +++ +V LF PT L + + G+ DSLR++ AG
Sbjct: 230 --EFRPVDALQLVQQEQVTSLFATPTHLDAL--AAAAAHAGSSLKLDSLRHVTFAGATMP 285
Query: 408 HETKNWAEKSFNVTMLNHWWQTETGHSI 435
+ +N + TE +S+
Sbjct: 286 DAVLETVHQHLPGEKVNIYGTTEAMNSL 313
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y T D + G + + R DD+I G + S +E V+ + P V + VIG+ +
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 614 TKGE 617
G+
Sbjct: 439 RWGQ 442
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 104 TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163
T + ++YAEL + +A L A G+ GDRV EA+V LATVR G ++
Sbjct: 23 TAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLP 82
Query: 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPN-KVVRYKTILNEALEISSCKPDYCIIFQ 222
+ + EL + A+P +++ C +P+ + + + PD
Sbjct: 83 LNTAYTLHELDYFITDAEPXIVV---C--DPSXRDGIAAIAAXVGATVETLGPD------ 131
Query: 223 RRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
G L D A + + A+D ILYTSGTTG+ G
Sbjct: 132 -----------GRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGA 173
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D G DE GY+++ R D++ G + +E + + P V ++AVIGVP
Sbjct: 376 GFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHA 435
Query: 614 TKGE 617
GE
Sbjct: 436 DFGE 439
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D G DE GY+++ R D++ G + +E + + P V ++AVIGVP
Sbjct: 376 GFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHA 435
Query: 614 TKGE--IPFCLYIKKRIPLDKMGFSGLIG 640
GE F + ++ P + GL G
Sbjct: 436 DFGEGVTAFVVLXREFAPSEAQVLHGLDG 464
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 104 TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163
T + ++YAEL + +A L A G+ GDRV EA+V LATVR G ++
Sbjct: 23 TAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLP 82
Query: 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPN-KVVRYKTILNEALEISSCKPDYCIIFQ 222
+ + EL + A+P +++ C +P+ + + + PD
Sbjct: 83 LNTAYTLHELDYFITDAEPXIVV---C--DPSXRDGIAAIAAXVGATVETLGPD------ 131
Query: 223 RRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
G L D A + + A+D ILYTSGTTG+ G
Sbjct: 132 -----------GRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGA 173
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 104 TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163
T + ++YAEL + +A L A G+ GDRV EA+V LATVR G ++
Sbjct: 23 TAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLP 82
Query: 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPN-KVVRYKTILNEALEISSCKPDYCIIFQ 222
+ + EL + A+P +++ C +P+ + + + PD
Sbjct: 83 LNTAYTLHELDYFITDAEPXIVV---C--DPSXRDGIAAIAAXVGATVETLGPD------ 131
Query: 223 RRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
G L D A + + A+D ILYTSGTTG+ G
Sbjct: 132 -----------GRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGA 173
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D G DE GY+++ R D++ G + +E + + P V ++AVIGVP
Sbjct: 376 GFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHA 435
Query: 614 TKGE 617
GE
Sbjct: 436 DFGE 439
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 117/299 (39%), Gaps = 60/299 (20%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
VAL+H++ ++TY L E+ + LA L +GV+ G V +++ + +V++LA
Sbjct: 92 VALLHEA------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAV 145
Query: 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCK 214
++ G ++++ F L LE +++ + ++ T+ E
Sbjct: 146 LKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRP--LSGRLTGTTTLYVE-------- 195
Query: 215 PDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
D DA A L+ P D +++TSG+TG+
Sbjct: 196 ---------------------DEAASDAPAGNLATGVGP---EDVACVMFTSGSTGR--- 228
Query: 275 CSELRSEDQPKGILRPVGGHIATLAWTMSVIY-NMGQDDVWWTASDMGWVVGHSYICYGP 333
PKG++ P H A + Y G D+V+ S + W +G
Sbjct: 229 ---------PKGVMSP---HRALTGTYLGQDYAGFGPDEVFLQCSPVSWDA-FGLELFGA 275
Query: 334 LAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYS 392
L G V+ G+ PDP + ++ H V L + + + E ++ G +Y+
Sbjct: 276 LLFGARCVLQSGQ---NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYA 331
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
GY++T D D GY+ + R D+I G + +E V P + D +G P+
Sbjct: 375 GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDD 434
Query: 614 TKGEIPFCLYIKK 626
T G++P ++ +
Sbjct: 435 TWGQVPKLYFVSE 447
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 542 QRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPD 601
Q+F+ F Y T D + +G I R D+ + + GHR+ +E ++L H
Sbjct: 395 QKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMY 454
Query: 602 VGDTAVIGVPEPTKGEIPFCLYI--KKRIPLDKMGFSGLIGFGKLERPTSLL 651
+ +TAV V + + + C Y +K IPL++ L F E PT ++
Sbjct: 455 ISETAV-SVHKDHQEQPYLCAYFVSEKHIPLEQ-----LRQFSSEELPTYMI 500
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 236 DILWDDALAQRL-SHRCVPVEANDPLYILYTSGTTGKPQGC 275
+I +D + R ++ VP ++ D Y++YTSGTTG P+G
Sbjct: 160 EIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGT 200
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 95/504 (18%), Positives = 173/504 (34%), Gaps = 133/504 (26%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
K+TY +L+E LA +++ +++Y + PE I++ L V+ G + V
Sbjct: 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSI 85
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
A + E++ K++++A+ T+ + + I S I F +
Sbjct: 86 PADRVQRIAENSGAKLLLSATA----------VTVTDLPVRIVSEDNLKDIFFTHKGN-- 133
Query: 229 AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL 288
TP + H V+ ++ YI+YTSG+TG P+G
Sbjct: 134 ---TPNPE------------H---AVKGDENFYIIYTSGSTGNPKG-------------- 161
Query: 289 RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGIT--------- 339
+ + YN W D G ++ P + ++
Sbjct: 162 -------------VQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
Query: 340 --SVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397
++ D P + + + + P+ + E S + +++
Sbjct: 209 TGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS----ESMLPNMK 264
Query: 398 YLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTE-----TGHSITAHCLGYQHDTVPPKY 451
GE +E + E+ T++N + TE TG +T L Q+ ++P Y
Sbjct: 265 TFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD-QYKSLPVGY 323
Query: 452 STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND 511
++ C R+L I++ D
Sbjct: 324 C-----------------------KSDC-RLL-----------------------IMKED 336
Query: 512 GSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG--YYDTMDAGYYDENGY 569
G+ E G IV+ P ++S Y + FT G Y T DAGY ENG
Sbjct: 337 GTIAPDGEKGEIVIVGP----SVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391
Query: 570 IYVTARDDDVINVAGHRLSTSALE 593
++ R D I + G+R+ +E
Sbjct: 392 LFYNGRLDFQIKLHGYRMELEEIE 415
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 95/504 (18%), Positives = 173/504 (34%), Gaps = 133/504 (26%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
K+TY +L+E LA +++ +++Y + PE I++ L V+ G + V
Sbjct: 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSI 85
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
A + E++ K++++A+ T+ + + I S I F +
Sbjct: 86 PADRVQRIAENSGAKLLLSATA----------VTVTDLPVRIVSEDNLKDIFFTHKGN-- 133
Query: 229 AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL 288
TP + H V+ ++ YI+YTSG+TG P+G
Sbjct: 134 ---TPNPE------------H---AVKGDENFYIIYTSGSTGNPKG-------------- 161
Query: 289 RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGIT--------- 339
+ + YN W D G ++ P + ++
Sbjct: 162 -------------VQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
Query: 340 --SVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397
++ D P + + + + P+ + E S + +++
Sbjct: 209 TGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS----ESMLPNMK 264
Query: 398 YLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTE-----TGHSITAHCLGYQHDTVPPKY 451
GE +E + E+ T++N + TE TG +T L Q+ ++P Y
Sbjct: 265 TFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD-QYKSLPVGY 323
Query: 452 STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND 511
++ C R+L I++ D
Sbjct: 324 C-----------------------KSDC-RLL-----------------------IMKED 336
Query: 512 GSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG--YYDTMDAGYYDENGY 569
G+ E G IV+ P ++S Y + FT G Y T DAGY ENG
Sbjct: 337 GTIAPDGEKGEIVIVGP----SVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391
Query: 570 IYVTARDDDVINVAGHRLSTSALE 593
++ R D I + G+R+ +E
Sbjct: 392 LFYNGRLDFQIKLHGYRMELEEIE 415
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 32/165 (19%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY +L+ +A + ++ + A VL++ + + + +A + G + V A
Sbjct: 31 TYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAP 90
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
+ A +E AKP +IIA +E + L EI S K
Sbjct: 91 ERILAIIEIAKPSLIIA----IEEFPLTIEGISLVSLSEIESAK---------------- 130
Query: 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
LA+ R V+ +D YI++TSGTTG+P+G
Sbjct: 131 ------------LAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGV 163
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 507 IIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY--YDTMDAGYY 564
II DG E E G I+V P P++ + +FT F G Y T D G
Sbjct: 335 IIDEDGKELSSGEQGEIIVT---GPAVSKGYLNNPEKTAEAFFT-FKGQPAYHTGDIGSL 390
Query: 565 DENGYIYVTARDDDVINVAGHRLSTSALEDV 595
E+ + R D I AG+R+ LEDV
Sbjct: 391 TEDNILLYGGRLDFQIKYAGYRIE---LEDV 418
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R+++Y EL + LA LA G+ GD L+ +P + E + A ++ G +
Sbjct: 54 RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYS 113
Query: 168 FAARELCARLEHAKPKVIIAA 188
EL A ++ +PK++I +
Sbjct: 114 HRQYELNAFIKQIQPKLLIGS 134
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 490 NVPKGQNATHFTSVEVRIIRNDGSE-CEPHELGRIVV-KLPLPPGTMSTLYKAPQRFMKI 547
++P G+ V ++ G E EP G IV L G + + F+++
Sbjct: 332 DIPIGKA---IAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVEL 388
Query: 548 -YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTA 606
Y + Y T D YDE G + R D + + G+RL ALE P + D A
Sbjct: 389 PYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCA 448
Query: 607 VI 608
++
Sbjct: 449 LL 450
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV 602
G+ DT D GY +GY+YVT R D+I + G + +E + P++
Sbjct: 438 GWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEI 485
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 33/169 (19%)
Query: 108 RKVTYAELQEQVSLLAGSLAA-IGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG 166
+ +TY EL EQ A ++ I +L+Y + P IVS L +V+ G + V
Sbjct: 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDL 84
Query: 167 GFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
+ + +E + +++I A+ L I + Q
Sbjct: 85 SIPSERIAKIIESSGAELLIHAA-----------------GLSIDAVGQQ----IQTVSA 123
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
EE G + D V+ ++ YI+YTSG+TG P+G
Sbjct: 124 EELLENEGGSVSQDQW-----------VKEHETFYIIYTSGSTGNPKGV 161
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 31/169 (18%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRV-LIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
TY +L + +A +L A G GDRV L++ P +P I + L + G I ++ A
Sbjct: 42 TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPIYPP-A 99
Query: 170 ARELCARLE----HAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC 225
+L + + ++KP +++ + ++ T P + I
Sbjct: 100 QEKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNT-----------NPKFLKI-PAIA 147
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
+E EL + S + +++ND ++ YTSG+T P+G
Sbjct: 148 LESIELN------------RSSSWQPTSIKSNDIAFLQYTSGSTXHPKG 184
>pdb|1PNU|K Chain K, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|K Chain K, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|N Chain N, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|N Chain N, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|N Chain N, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|N Chain N, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|N Chain N, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 124
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 70 WFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTK 105
W +I AC + RH RG + + D PVTK
Sbjct: 35 WIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTK 70
>pdb|1NJM|K Chain K, The Crystal Structure Of The 50s Large Ribosomal Subunit
From Deinococcus Radiodurans Complexed With A Trna
Acceptor Stem Mimic (Asm) And The Antibiotic Sparsomycin
pdb|1NJP|K Chain K, The Crystal Structure Of The 50s Large Ribosomal Subunit
From Deinococcus Radiodurans Complexed With A Trna
Acceptor Stem Mimic (Asm)
pdb|1NWX|K Chain K, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|K Chain K, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1XBP|K Chain K, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|1Y69|K Chain K, Rrf Domain I In Complex With The 50s Ribosomal Subunit
From Deinococcus Radiodurans
pdb|3PIO|J Chain J, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|J Chain J, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 141
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 70 WFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTK 105
W +I AC + RH RG + + D PVTK
Sbjct: 41 WIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTK 76
>pdb|1NKW|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1SM1|K Chain K, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|2ZJP|J Chain J, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|J Chain J, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|J Chain J, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|J Chain J, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|J Chain J, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
Length = 142
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 70 WFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTK 105
W +I AC + RH RG + + D PVTK
Sbjct: 42 WIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTK 77
>pdb|3MYR|A Chain A, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|C Chain C, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|E Chain E, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|G Chain G, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 269
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 688 AIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPL 726
A+G AAF GLP+ R T S++D+ R+KP+
Sbjct: 109 AVGTCAAFG------GLPQARPNPTGAMSVMDLVRDKPV 141
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 644 LERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPI 692
L P SLL PI + +KP P ++EE+ + + +L++EA P+
Sbjct: 174 LTVPASLLDTPIDLSLKPNDP-------EAEEEVIENVLQLIKEAKNPV 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,796,389
Number of Sequences: 62578
Number of extensions: 1078498
Number of successful extensions: 2634
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2441
Number of HSP's gapped (non-prelim): 146
length of query: 737
length of database: 14,973,337
effective HSP length: 106
effective length of query: 631
effective length of database: 8,340,069
effective search space: 5262583539
effective search space used: 5262583539
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)