Query psy8076
Match_columns 737
No_of_seqs 308 out of 3285
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 17:48:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ry2_A Acetyl-coenzyme A synth 100.0 3.5E-95 1.2E-99 844.8 58.6 621 13-731 11-647 (663)
2 1pg4_A Acetyl-COA synthetase; 100.0 1.2E-94 4E-99 840.0 61.3 600 25-730 21-630 (652)
3 3etc_A AMP-binding protein; ad 100.0 1.7E-80 6E-85 711.3 55.3 525 69-723 48-579 (580)
4 3ni2_A 4-coumarate:COA ligase; 100.0 5.6E-79 1.9E-83 694.0 49.5 506 78-723 23-535 (536)
5 3c5e_A Acyl-coenzyme A synthet 100.0 4.3E-78 1.5E-82 690.5 56.4 522 68-724 29-563 (570)
6 2vsq_A Surfactin synthetase su 100.0 4.7E-80 1.6E-84 769.0 41.1 557 4-721 396-958 (1304)
7 3g7s_A Long-chain-fatty-acid-- 100.0 3.4E-79 1.2E-83 697.9 44.0 511 78-725 20-544 (549)
8 4fuq_A Malonyl COA synthetase; 100.0 1.7E-78 5.8E-83 684.3 45.1 495 81-723 4-500 (503)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1E-78 3.4E-83 692.1 43.3 502 78-723 26-531 (539)
10 3r44_A Fatty acyl COA syntheta 100.0 1.8E-78 6.2E-83 686.4 45.1 500 75-724 14-514 (517)
11 4dg8_A PA1221; ANL superfamily 100.0 4.7E-78 1.6E-82 695.1 43.2 480 78-724 28-514 (620)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.4E-77 8.1E-82 675.7 46.8 486 78-722 3-503 (504)
13 3fce_A D-alanine--poly(phospho 100.0 1.9E-77 6.6E-82 677.9 42.6 499 79-726 3-507 (512)
14 3o83_A Peptide arylation enzym 100.0 4.4E-78 1.5E-82 687.6 37.0 505 79-724 32-541 (544)
15 3rg2_A Enterobactin synthase c 100.0 2.7E-76 9.3E-81 682.7 51.4 502 79-723 29-534 (617)
16 3e7w_A D-alanine--poly(phospho 100.0 1.6E-76 5.5E-81 670.0 47.9 496 79-724 3-504 (511)
17 4gr5_A Non-ribosomal peptide s 100.0 8.8E-78 3E-82 689.0 37.6 486 78-720 76-568 (570)
18 2v7b_A Benzoate-coenzyme A lig 100.0 1.7E-76 5.8E-81 673.0 47.8 509 72-720 19-529 (529)
19 1v25_A Long-chain-fatty-acid-C 100.0 2.4E-77 8.2E-82 681.0 40.6 507 78-723 19-536 (541)
20 1amu_A GRSA, gramicidin synthe 100.0 6.4E-77 2.2E-81 679.8 43.6 485 78-722 40-528 (563)
21 2d1s_A Luciferase, luciferin 4 100.0 3.1E-76 1.1E-80 672.6 47.8 504 78-723 26-543 (548)
22 3l8c_A D-alanine--poly(phospho 100.0 3.9E-76 1.3E-80 668.9 45.1 505 78-726 5-515 (521)
23 3rix_A Luciferase, luciferin 4 100.0 2.7E-77 9.2E-82 682.3 35.2 511 78-726 21-544 (550)
24 3ivr_A Putative long-chain-fat 100.0 7.3E-77 2.5E-81 672.7 34.8 493 78-726 7-504 (509)
25 3tsy_A Fusion protein 4-coumar 100.0 2.4E-76 8.2E-81 718.1 38.4 565 9-724 8-583 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 3.5E-75 1.2E-79 657.3 34.6 479 76-719 21-504 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 8.1E-74 2.8E-78 646.7 40.5 494 79-725 3-499 (501)
28 3kxw_A Saframycin MX1 syntheta 100.0 4.2E-73 1.5E-77 654.2 37.2 544 78-735 12-579 (590)
29 3ite_A SIDN siderophore synthe 100.0 1.3E-72 4.6E-77 645.7 32.8 512 79-728 22-548 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 7.3E-71 2.5E-75 633.9 40.8 518 78-724 22-564 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.8E-57 6.2E-62 510.5 29.7 424 78-575 25-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.5E-53 1.2E-57 455.4 21.5 316 256-724 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 5.4E-48 1.8E-52 427.7 24.7 333 253-715 81-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.6E-46 8.8E-51 415.1 24.9 336 252-717 87-438 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 7.2E-46 2.5E-50 410.8 23.7 334 252-716 85-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.5E-29 8.7E-34 271.5 12.1 237 254-585 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.5 8.4E-15 2.9E-19 127.7 6.8 99 574-714 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.5 2E-14 6.8E-19 125.1 7.8 100 574-715 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.5 1.1E-06 3.8E-11 97.6 15.7 63 514-598 392-458 (609)
40 4eql_A 4-substituted benzoates 98.4 1.2E-06 4.2E-11 97.1 13.0 64 514-599 380-447 (581)
41 4epl_A Jasmonic acid-amido syn 98.4 3.7E-06 1.3E-10 93.1 16.1 75 513-609 386-472 (581)
42 3qov_A Phenylacetate-coenzyme 86.4 4.4 0.00015 43.2 12.1 97 93-190 86-187 (436)
43 2y4o_A Phenylacetate-coenzyme 85.9 6.4 0.00022 42.0 13.2 98 92-190 91-193 (443)
44 2y27_A Phenylacetate-coenzyme 85.8 4.8 0.00016 42.9 12.1 98 92-190 89-191 (437)
45 3hgu_A EHPF; phenazine, antibi 65.3 19 0.00066 37.1 9.2 97 92-190 90-214 (369)
46 3ipl_A 2-succinylbenzoate--COA 63.6 72 0.0025 34.2 13.8 94 92-189 162-259 (501)
47 3o83_A Peptide arylation enzym 58.8 72 0.0025 34.7 12.8 95 92-190 190-290 (544)
48 2d1s_A Luciferase, luciferin 4 58.2 40 0.0014 36.9 10.6 95 93-189 192-291 (548)
49 1mdb_A 2,3-dihydroxybenzoate-A 57.0 91 0.0031 33.8 13.2 95 92-190 181-281 (539)
50 1l5a_A Amide synthase, VIBH; n 54.0 4.2 0.00014 43.3 1.5 44 3-46 371-418 (436)
51 3r44_A Fatty acyl COA syntheta 51.1 93 0.0032 33.6 12.0 94 92-190 169-267 (517)
52 3rix_A Luciferase, luciferin 4 47.3 86 0.0029 34.1 11.0 98 92-190 189-290 (550)
53 3rg2_A Enterobactin synthase c 44.7 1.5E+02 0.0053 32.6 12.8 95 92-190 183-283 (617)
54 4hvm_A Tlmii; PSI-biology, mid 44.3 5.8 0.0002 43.0 0.7 42 4-46 426-468 (493)
55 4gs5_A Acyl-COA synthetase (AM 43.0 1E+02 0.0034 31.5 10.1 92 92-189 36-131 (358)
56 3euc_A Histidinol-phosphate am 42.8 2.3E+02 0.0078 28.4 12.9 78 131-212 106-187 (367)
57 3kxw_A Saframycin MX1 syntheta 41.3 80 0.0027 34.7 9.6 95 92-189 166-268 (590)
58 3fce_A D-alanine--poly(phospho 40.6 69 0.0024 34.5 8.8 95 92-189 143-243 (512)
59 3g7s_A Long-chain-fatty-acid-- 39.3 1.2E+02 0.0042 32.9 10.6 69 306-380 72-140 (549)
60 3e7w_A D-alanine--poly(phospho 38.9 1.1E+02 0.0038 32.8 10.2 95 92-189 142-242 (511)
61 3dzz_A Putative pyridoxal 5'-p 37.5 1.6E+02 0.0053 29.9 10.7 64 131-197 106-176 (391)
62 1t5h_X 4-chlorobenzoyl COA lig 37.0 1.2E+02 0.004 32.6 9.9 94 92-189 152-252 (504)
63 3c5e_A Acyl-coenzyme A synthet 36.5 1.8E+02 0.0061 31.8 11.4 95 92-189 205-305 (570)
64 3ri6_A O-acetylhomoserine sulf 35.7 1.8E+02 0.0062 30.5 10.9 70 131-202 118-188 (430)
65 3nyq_A Malonyl-COA ligase; A/B 34.0 1.9E+02 0.0064 31.0 10.9 93 92-189 154-251 (505)
66 1fg7_A Histidinol phosphate am 33.7 3.2E+02 0.011 27.3 12.2 84 132-223 97-185 (356)
67 3tbh_A O-acetyl serine sulfhyd 33.1 1.4E+02 0.0047 30.2 9.0 93 92-190 34-127 (334)
68 3ffh_A Histidinol-phosphate am 33.1 3.7E+02 0.013 26.6 13.3 86 131-223 105-194 (363)
69 1v25_A Long-chain-fatty-acid-C 32.9 1.6E+02 0.0053 31.9 10.1 98 92-190 175-276 (541)
70 1eg5_A Aminotransferase; PLP-d 32.0 2.4E+02 0.0082 28.2 11.0 70 131-201 86-159 (384)
71 1elu_A L-cysteine/L-cystine C- 32.0 1.9E+02 0.0065 29.2 10.2 73 127-200 94-173 (390)
72 4hvk_A Probable cysteine desul 32.0 1.5E+02 0.0053 29.6 9.5 68 132-200 86-157 (382)
73 3ezx_A MMCP 1, monomethylamine 31.5 2.2E+02 0.0077 26.5 9.6 90 313-413 94-194 (215)
74 3ly1_A Putative histidinol-pho 29.7 4.1E+02 0.014 26.1 13.8 87 131-223 89-180 (354)
75 3ivr_A Putative long-chain-fat 29.4 3.7E+02 0.012 28.5 12.4 95 92-190 159-257 (509)
76 4eb5_A Probable cysteine desul 29.3 1.6E+02 0.0053 29.7 9.0 68 132-200 86-157 (382)
77 2e7j_A SEP-tRNA:Cys-tRNA synth 28.7 3.3E+02 0.011 27.0 11.4 67 131-200 90-166 (371)
78 3a2b_A Serine palmitoyltransfe 28.0 4.2E+02 0.014 26.7 12.1 66 131-200 124-192 (398)
79 1ry2_A Acetyl-coenzyme A synth 28.0 1.3E+02 0.0045 33.7 8.6 81 287-373 112-195 (663)
80 2z9v_A Aspartate aminotransfer 27.6 3.5E+02 0.012 27.2 11.4 70 131-201 80-154 (392)
81 3etc_A AMP-binding protein; ad 27.5 1.3E+02 0.0046 32.9 8.4 95 255-372 69-166 (580)
82 3vc3_A Beta-cyanoalnine syntha 27.5 1.9E+02 0.0065 29.3 8.9 93 92-189 49-141 (344)
83 3ni2_A 4-coumarate:COA ligase; 27.3 1.2E+02 0.0042 32.7 8.0 97 92-189 177-279 (536)
84 3ppl_A Aspartate aminotransfer 27.0 5.2E+02 0.018 26.4 13.1 85 134-223 133-222 (427)
85 1pg4_A Acetyl-COA synthetase; 26.4 1.4E+02 0.0048 33.3 8.5 79 287-372 106-187 (652)
86 3ndn_A O-succinylhomoserine su 26.3 3.7E+02 0.013 27.8 11.3 74 126-202 113-187 (414)
87 1amu_A GRSA, gramicidin synthe 26.3 1.6E+02 0.0054 32.2 8.7 95 92-189 181-281 (563)
88 3isl_A Purine catabolism prote 26.2 3.3E+02 0.011 27.6 10.9 71 131-202 83-157 (416)
89 1e5e_A MGL, methionine gamma-l 26.2 3.9E+02 0.013 27.3 11.5 69 131-201 98-167 (404)
90 4h1h_A LMO1638 protein; MCCF-l 25.0 1.6E+02 0.0054 29.7 7.7 71 130-200 8-97 (327)
91 3kax_A Aminotransferase, class 24.1 3.4E+02 0.012 27.1 10.5 64 131-198 103-173 (383)
92 1d2f_A MALY protein; aminotran 24.0 4.1E+02 0.014 26.7 11.1 65 131-198 108-179 (390)
93 3cq5_A Histidinol-phosphate am 24.0 5.4E+02 0.018 25.5 14.0 77 131-211 113-193 (369)
94 2v7b_A Benzoate-coenzyme A lig 24.0 1.7E+02 0.0059 31.4 8.4 69 305-379 67-135 (529)
95 4dq6_A Putative pyridoxal phos 23.6 2.7E+02 0.0091 28.0 9.5 61 131-196 111-179 (391)
96 3fdb_A Beta C-S lyase, putativ 23.6 5.4E+02 0.018 25.5 11.9 64 131-198 102-167 (377)
97 3ju7_A Putative PLP-dependent 23.3 1.4E+02 0.0047 30.6 7.1 62 124-188 68-136 (377)
98 3sr3_A Microcin immunity prote 23.3 1.8E+02 0.0061 29.4 7.7 71 130-200 9-98 (336)
99 3t5a_A Long-chain-fatty-acid-- 23.3 1.8E+02 0.0061 30.6 8.3 91 92-185 182-286 (480)
100 3tla_A MCCF; serine protease, 22.8 1.8E+02 0.0061 29.9 7.6 71 130-200 39-128 (371)
101 3cai_A Possible aminotransfera 22.7 2.8E+02 0.0096 28.1 9.5 71 131-202 110-186 (406)
102 3op7_A Aminotransferase class 22.4 3E+02 0.01 27.6 9.5 65 131-199 102-172 (375)
103 2ch1_A 3-hydroxykynurenine tra 22.2 3.9E+02 0.013 26.8 10.5 71 131-202 90-164 (396)
104 3gqw_A Fatty acid AMP ligase; 21.6 2.2E+02 0.0074 30.9 8.7 96 92-189 175-278 (576)
105 2bkw_A Alanine-glyoxylate amin 21.3 5.3E+02 0.018 25.6 11.3 70 132-202 84-158 (385)
106 3ijw_A Aminoglycoside N3-acety 21.2 1.3E+02 0.0045 29.3 5.9 25 120-144 18-42 (268)
107 1c7n_A Cystalysin; transferase 20.9 3.4E+02 0.012 27.4 9.7 63 132-197 111-180 (399)
108 2cb1_A O-acetyl homoserine sul 20.8 3.2E+02 0.011 28.0 9.5 70 131-203 92-162 (412)
109 2cvi_A 75AA long hypothetical 20.5 1.8E+02 0.0062 22.1 5.6 33 589-626 15-47 (83)
110 4dg8_A PA1221; ANL superfamily 20.4 2.5E+02 0.0085 31.0 8.9 95 92-190 163-262 (620)
111 3zrp_A Serine-pyruvate aminotr 20.1 4.1E+02 0.014 26.4 10.1 69 131-200 74-146 (384)
112 3kki_A CAI-1 autoinducer synth 20.0 6.3E+02 0.022 25.5 11.6 67 131-201 140-206 (409)
No 1
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.5e-95 Score=844.83 Aligned_cols=621 Identities=34% Similarity=0.614 Sum_probs=517.4
Q ss_pred ccccccccccCChhHHHHHHHHHhhChhhHHHHHHhh-cccccCccccccCC---C-CCC--CCCCCCCchhHHHHHHhh
Q psy8076 13 SGNKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNM-ATWSKKWDRILDNS---D-QPF--TKWFVGGEINACYNAIDR 85 (737)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~-~~~~~~~~~~l~~~---~-~~~--~~~~~~~~~n~~~~~l~~ 85 (737)
++.+|+......+++|.++++++++||+.||+++++. +.|.++++++++.. . .+. .+||+++.+|+++++|++
T Consensus 11 ~~~~~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~ 90 (663)
T 1ry2_A 11 SSGLVPRGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDR 90 (663)
T ss_dssp -------------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHH
T ss_pred cccccccccCCChhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHH
Confidence 4566777777778899999999999999999999988 99999999999765 3 334 799999999999999999
Q ss_pred hhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEec
Q psy8076 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVV 164 (737)
Q Consensus 86 ~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl 164 (737)
+++++ ||++|+++.++..+..+++||+||+++++++|+.|+ ++|+++||+|+|+++|++|+++++|||+++|++++|+
T Consensus 91 ~a~~~-pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 91 HALKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVV 169 (663)
T ss_dssp HHTTC-TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HhccC-CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEee
Confidence 99987 999999997544445689999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHh
Q psy8076 165 FGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALA 244 (737)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~ 244 (737)
++.++.+++.+++++++++++|+++.....++.++++..+.+++..++ .+++++++.........+.......|.++..
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP-GVRHVLVYRKTNNPSVAFHAPRDLDWATEKK 248 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT-TCCEEEEECSSCCSSCCCCSSSEEEHHHHHT
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC-CCceEEEEecCCCCccccCCCccccHHHHHh
Confidence 999999999999999999999999998888888888888888776665 5677887765321011122234566777765
Q ss_pred hcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccc
Q psy8076 245 QRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323 (737)
Q Consensus 245 ~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 323 (737)
.... ....+..+++++||+||||||| +||||+++|++++......+...++++++|++++.+|++|+
T Consensus 249 ~~~~~~~~~~~~~~d~a~ilyTSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (663)
T 1ry2_A 249 KYKTYYPCTPVDSEDPLFLLYTSGSTG------------APKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWI 316 (663)
T ss_dssp TSCSCCCCCCEETTSCCEEEEECCSSS------------SCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSH
T ss_pred hcCCCCCccccCCCCceEEEeccCCCC------------CCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHh
Confidence 4332 3445678899999999999999 99999999999887776667777999999999999999999
Q ss_pred cchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeec
Q psy8076 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403 (737)
Q Consensus 324 ~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gG 403 (737)
+|+.+.++.+|+.|++++++++.+. .+++..+++.|+++++|+++++|++++.|.+...... ...++++||.+++||
T Consensus 317 ~g~~~~~~~~L~~G~t~v~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~--~~~~l~sLr~i~~gG 393 (663)
T 1ry2_A 317 TGHTYVVYGPLLYGCATLVFEGTPA-YPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI--ENHSLKSLRCLGSVG 393 (663)
T ss_dssp HHHHHTTHHHHHHTSEEEEECSCTT-SSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS--SSCCCTTCCEEEECS
T ss_pred hhhHHHHHHHHHhCCEEEEECCCCC-CCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcccc--ccCCcCceEEEEEEc
Confidence 9987778999999999999987665 4789999999999999999999999999987654321 456789999999999
Q ss_pred CCCCHHHHHHHHHhcC---CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccc
Q psy8076 404 EHCDHETKNWAEKSFN---VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480 (737)
Q Consensus 404 e~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~ 480 (737)
|++++++++++.+.+| +++++.||+||+++.++..... ...+.++ +++|+|++|++ ++
T Consensus 394 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~-gs~G~p~~g~~-----v~------------ 454 (663)
T 1ry2_A 394 EPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG-GVTPMKP-GSASFPFFGID-----AV------------ 454 (663)
T ss_dssp SCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT-TCCCCCT-TCCCEECTTCC-----EE------------
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCC-CCcccCC-CccccCcCCCe-----EE------------
Confidence 9999999999999988 8999999999998766553220 1223445 78899999888 77
Q ss_pred cccccccccCCCCCCCCcccccceEEEEcC-CCCccCC-CcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeec
Q psy8076 481 RILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEP-HELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDT 558 (737)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~-g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~T 558 (737)
|+|+ +|++++. |+.|||+|+||+| +++.|||++++++.+.|+...+|||+|
T Consensus 455 --------------------------i~d~~~g~~v~~~g~~Gel~i~g~~p-~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 455 --------------------------VLDPNTGEELNTSHAEGVLAVKAAWP-SFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp --------------------------EECSSSTTCEECSSCEEEEEESSCCT-TSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred --------------------------EEcCCCCCcCCCCCcceEEEEecCCC-chhcccccChHHHHHhhhcCCCCEEEc
Confidence 9998 8999998 9999999999876 999999999999999998878999999
Q ss_pred CceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcccc
Q psy8076 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGL 638 (737)
Q Consensus 559 GDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 638 (737)
||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||.|.+|+|++++++..++.++|||+++++....
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~------ 581 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS------ 581 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------
T ss_pred CCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc------
Confidence 99999999999999999999999999999999999999999999999999999988899999999987651000
Q ss_pred ccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHH
Q psy8076 639 IGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIV 718 (737)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~ 718 (737)
.. ......++.++|+++++++|++|++|+.|+++++||+|+|||++|++|+
T Consensus 582 -~~----------------------------~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 632 (663)
T 1ry2_A 582 -TA----------------------------TDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632 (663)
T ss_dssp -----------------------------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHH
T ss_pred -cc----------------------------cchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHH
Confidence 00 0000013578999999999999999999999999999999999999999
Q ss_pred HHHcCC--CCCchhh
Q psy8076 719 DMARNK--PLRVRLV 731 (737)
Q Consensus 719 ~~~~~~--~~~~~~~ 731 (737)
+++.++ ++.+...
T Consensus 633 ~~~~~~~~~~~~~~~ 647 (663)
T 1ry2_A 633 KILAGESDQLGDVST 647 (663)
T ss_dssp HSCC-----------
T ss_pred HHHcCCCCCCCCccc
Confidence 999887 6655443
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.2e-94 Score=840.03 Aligned_cols=600 Identities=33% Similarity=0.642 Sum_probs=520.6
Q ss_pred hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCC---CCCCCCCCCCchhHHHHHHhhhhhccCCCceEEEEeC
Q psy8076 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSD---QPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDS 101 (737)
Q Consensus 25 ~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~ 101 (737)
.++|.++++++++||+.||+++++.+.|.++++++++... .+..+||+++.+|+++++|+++++++ ||++|+++.+
T Consensus 21 ~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~~-pd~~Al~~~~ 99 (652)
T 1pg4_A 21 PEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIWEG 99 (652)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGHHHH-TTSEEEEEEC
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHhhCceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHhccC-CCceEEEEEc
Confidence 3589999999999999999999988999999999987554 56779999999999999999999998 9999999975
Q ss_pred CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcC
Q psy8076 102 PVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAK 181 (737)
Q Consensus 102 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 181 (737)
+..+..+++||+||+++++++|++|+++|+++||+|+|+++|++|+++++|||+++|++++|+++.++.+++.+++++++
T Consensus 100 ~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~ 179 (652)
T 1pg4_A 100 DDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSS 179 (652)
T ss_dssp SSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcC
Confidence 44455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCcccCCccccchHHHHHHHHhcC-CCCCeEEEEecccccccccCCCCcccHHHHHhhcCC-CCCccccCCCC
Q psy8076 182 PKVIIAASCGVEPNKVVRYKTILNEALEISS-CKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS-HRCVPVEANDP 259 (737)
Q Consensus 182 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 259 (737)
++++|+++.....++.+++...+.+++...+ ..+++++++..... ...+.......|.++...... .......++++
T Consensus 180 ~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 258 (652)
T 1pg4_A 180 SRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS-DIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDP 258 (652)
T ss_dssp CSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC-CCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSE
T ss_pred CCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCC-cccccCCCceeHHHHHhhcCCCCCccccCCCCC
Confidence 9999999988888888888888887776543 24567777754311 111222334667777654332 33445678999
Q ss_pred eEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcE
Q psy8076 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGIT 339 (737)
Q Consensus 260 a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~ 339 (737)
+||+||||||| +||||+++|++++......+...++++++|++++++|++|++|+.+.++.+|+.|++
T Consensus 259 a~ilyTSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t 326 (652)
T 1pg4_A 259 LFILYTSGSTG------------KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAT 326 (652)
T ss_dssp EEEEEECCSSS------------SCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCE
T ss_pred EEEEeccCCCC------------CCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCce
Confidence 99999999999 999999999998877766667778999999999999999999987778999999999
Q ss_pred EEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcC
Q psy8076 340 SVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN 419 (737)
Q Consensus 340 ~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~ 419 (737)
++++++.+. .+++..+++.|+++++|+++++|++++.|.+...... ...++++||.+++|||++++++++++.+.+|
T Consensus 327 ~vl~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g 403 (652)
T 1pg4_A 327 TLMFEGVPN-WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI--EGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403 (652)
T ss_dssp EEEECSCTT-SSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT--TTCCCTTCCEEEEESSCCCHHHHHHHHHHTT
T ss_pred EEEECCCCC-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc--ccCCcCceEEEEEecCCCCHHHHHHHHHHhC
Confidence 999987654 4789999999999999999999999999987653211 4457899999999999999999999999988
Q ss_pred ---CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCC
Q psy8076 420 ---VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496 (737)
Q Consensus 420 ---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (737)
++++|.||+||+++.++.... .....++ +++|+|++|++ ++
T Consensus 404 ~~~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~-~s~G~p~~g~~-----v~---------------------------- 447 (652)
T 1pg4_A 404 KEKCPVVDTWWQTETGGFMITPLP--GAIELKA-GSATRPFFGVQ-----PA---------------------------- 447 (652)
T ss_dssp TTCSCEEEEBCCGGGSSCSBCCCT--TTCCBCT-TCCBSBCTTCC-----EE----------------------------
T ss_pred CCCCcEEccccCcccccceecCCC--CCcCccC-CccccCcCCCe-----EE----------------------------
Confidence 899999999999976655432 1223445 78999999988 87
Q ss_pred CcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeec
Q psy8076 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576 (737)
Q Consensus 497 ~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~ 576 (737)
|+|++|++++.|+.|||+|+||+| ++++|||++++++.+.|+...+|||+|||+|++|+||+|+|+||+
T Consensus 448 ----------i~d~~g~~v~~g~~GEl~i~g~~p-~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~ 516 (652)
T 1pg4_A 448 ----------LVDNEGHPQEGATEGNLVITDSWP-GQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRV 516 (652)
T ss_dssp ----------EECTTCCBCCSSEEEEEEECSCCT-TCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEES
T ss_pred ----------EECCCCCCcCCCceEEEEEccCCC-chhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecC
Confidence 999999999999999999999765 999999999999999998877899999999999999999999999
Q ss_pred CCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccc
Q psy8076 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIR 656 (737)
Q Consensus 577 dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (737)
||+||++|+||+|.|||++|.+||.|.+|+|++++++..++.++|||+++++ .
T Consensus 517 dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~------------~--------------- 569 (652)
T 1pg4_A 517 DDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG------------E--------------- 569 (652)
T ss_dssp SSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT------------C---------------
T ss_pred CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCC------------C---------------
Confidence 9999999999999999999999999999999999998889999999999875 1
Q ss_pred cccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC--CCCchh
Q psy8076 657 VLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK--PLRVRL 730 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~--~~~~~~ 730 (737)
...+++.++|+++|+++|+.|++|+.++++++||+|+|||++|++|++++.++ ++.+..
T Consensus 570 ---------------~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~ 630 (652)
T 1pg4_A 570 ---------------EPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTS 630 (652)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC--------
T ss_pred ---------------CCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCCCCCCCcc
Confidence 12345678999999999999999999999999999999999999999999987 655443
No 3
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.7e-80 Score=711.29 Aligned_cols=525 Identities=25% Similarity=0.353 Sum_probs=425.4
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHH
Q psy8076 69 KWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAI 148 (737)
Q Consensus 69 ~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v 148 (737)
+|.....+|+++++|+++++++ ||++|+++.++ .+..+++||+||.++++++|++|+++|+++||+|+|+++|+++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a~~~-pd~~Al~~~~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~ 125 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYARDS-PEKLAMIWCDD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHHHHC-TTCEEEEEEES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH
T ss_pred CCCCcccchHHHHHHHHHHhhC-CCCEEEEEEcC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 4555567889999999999998 99999998642 345689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccc
Q psy8076 149 VSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228 (737)
Q Consensus 149 va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~ 228 (737)
+++|||+++|++++|+++.++.+++.+++++++++++|++.... ....+.++...++.....++.+...
T Consensus 126 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (580)
T 3etc_A 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD-------VPEQVDEAHAECGDIPLKKAKVGGD---- 194 (580)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT-------HHHHHHHHHHHHCSCCCEEEEESSS----
T ss_pred HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh-------HHHHHHHHhhhCCCcceEEEEeCCc----
Confidence 99999999999999999999999999999999999999987531 2245555555555232455555432
Q ss_pred cccCCCCcccHHHHHhhcCC-CC-C---ccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh
Q psy8076 229 AELTPGYDILWDDALAQRLS-HR-C---VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS 303 (737)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~ 303 (737)
.......+.+....... .. . ....+++++||+||||||| .||||+++|.+.+..... ..
T Consensus 195 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~~~~~~~~~~~~-~~ 258 (580)
T 3etc_A 195 ---VLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAG------------FPKMVEHDNTYPLGHILT-AK 258 (580)
T ss_dssp ---CCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSS------------SCEEEEEETTHHHHHHHH-HH
T ss_pred ---cccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCC------------CccEEEeccHHHHHHHHH-HH
Confidence 11223455555544333 11 1 2467899999999999999 999999999876554443 44
Q ss_pred hhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCC
Q psy8076 304 VIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383 (737)
Q Consensus 304 ~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~ 383 (737)
..+++.+++++++.++++|..+....++.++..|+++++.+.. .+++..+++.|+++++|+++++|++++.|.+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 335 (580)
T 3etc_A 259 YWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD---RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL 335 (580)
T ss_dssp TTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECS---SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC
T ss_pred HhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCC---CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc
Confidence 4578899999999999999988666688999999999998632 4799999999999999999999999999987532
Q ss_pred CCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCC
Q psy8076 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGK 463 (737)
Q Consensus 384 ~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~ 463 (737)
...++++||.+++|||++++++.++|.+.+|++++|.||+||+++.++... ....++ +++|+|++|++
T Consensus 336 -----~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~----~~~~~~-~~~G~p~~~~~-- 403 (580)
T 3etc_A 336 -----SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP----WMEPKP-GSIGKPTPGYK-- 403 (580)
T ss_dssp --------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT----TSCCCT-TCCBEECTTCE--
T ss_pred -----ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC----CCCCCC-CccccCCCCCE--
Confidence 455789999999999999999999999999999999999999986655432 223344 78999999988
Q ss_pred cceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecC--CCCCcccccccCh
Q psy8076 464 YVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP--LPPGTMSTLYKAP 541 (737)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~--~~~~~~~gy~~~~ 541 (737)
++ |+|++|++||+|+.|||+|+|+ .|++++.|||+++
T Consensus 404 ---v~--------------------------------------ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p 442 (580)
T 3etc_A 404 ---IE--------------------------------------LMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDP 442 (580)
T ss_dssp ---EE--------------------------------------EECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCH
T ss_pred ---EE--------------------------------------EECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCH
Confidence 77 9999999999999999999972 1238999999999
Q ss_pred hhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEE
Q psy8076 542 QRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621 (737)
Q Consensus 542 ~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 621 (737)
+.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++|
T Consensus 443 ~~t~~~f~---~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a 519 (580)
T 3etc_A 443 ERTEETWH---DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKA 519 (580)
T ss_dssp HHHHHHEE---TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred hHHHhhcC---CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEE
Confidence 99998873 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEc
Q psy8076 622 LYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSV 701 (737)
Q Consensus 622 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v 701 (737)
+|+++++ . ...+.+.++|+++++++|+.|++|+.++++
T Consensus 520 ~vv~~~~------------~------------------------------~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v 557 (580)
T 3etc_A 520 TIVLTKD------------Y------------------------------TPSDSLKNELQDHVKNVTAPYKYPRIIEFV 557 (580)
T ss_dssp EEEECTT------------C------------------------------CCCHHHHHHHHHHHHHHSCGGGCCSEEEEE
T ss_pred EEEECCC------------C------------------------------CCCHHHHHHHHHHHHhhCCCccCCeEEEEe
Confidence 9999876 2 123567889999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHcC
Q psy8076 702 TGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 702 ~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
++||+|+|||++|++|++++.+
T Consensus 558 ~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 558 PELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp CC--------------------
T ss_pred CCCCCCCCcCCcHHHHHhHhhc
Confidence 9999999999999999998764
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.6e-79 Score=693.99 Aligned_cols=506 Identities=19% Similarity=0.299 Sum_probs=427.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|.++++++ ||++|+++... .+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 23 ~l~~~l~~~a~~~-p~~~a~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 23 PLHSYVLENLSNH-SSKPCLINGAN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp CHHHHHTTTGGGS-TTSEEEEETTT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcC-CCceEEEECCC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 4789999999998 99999998631 278999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|++... ...+.+...... ..+++++.. .....
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~---------~~~~~~~~~~~~---~~~~~~~~~--------~~~~~ 157 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACY---------YEKVKDFARESD---VKVMCVDSA--------PDGCL 157 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGG---------THHHHHHHHHHT---CEEEESSCC--------CTTCE
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHH---------HHHHHHHHhhcC---ceEEEecCC--------CCCcc
Confidence 9999999999999999999999999999998753 233333332221 133333221 11234
Q ss_pred cHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh---hhhcCCCCcE
Q psy8076 238 LWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS---VIYNMGQDDV 313 (737)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~---~~~~~~~~d~ 313 (737)
.+.++...... .+.....+++++||+||||||| .||||+++|++++........ ..+++.++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~ 225 (536)
T 3ni2_A 158 HFSELTQADENEAPQVDISPDDVVALPYSSGTTG------------LPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDV 225 (536)
T ss_dssp ETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSS------------SCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCC
T ss_pred CHHHHhhccccccccCCCCccCEEEEEcCCCccc------------cchHHHhhHHHHHHHHHHHHhhccccccCCCCCE
Confidence 45555443222 2334567899999999999999 999999999987776655332 1356889999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
+++.+|++|++++...++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.... ...++
T Consensus 226 ~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l 296 (536)
T 3ni2_A 226 ILCVLPMFHIYALNSIMLCGLRVGAPILIMPK-----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL----DKHDL 296 (536)
T ss_dssp EEECSCTTSHHHHHHTHHHHHHHTCCEEECSS-----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG----GGSCC
T ss_pred EEEecChHHHHHHHHHHHHHHhcCCEEEEcCC-----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc----ccCCC
Confidence 99999999999987778899999999999863 6899999999999999999999999999887543 45578
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccc-cCCCCCCCCCCccCCCcCCCCCCcceeeeec
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCL-GYQHDTVPPKYSTGLPFPGYDGKYVNIVMLN 471 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~ 471 (737)
++||.+++|||++++++.+++.+.+ +..++|.||+||+++.++.... .......++ +++|+|+++++ ++
T Consensus 297 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~-----~~--- 367 (536)
T 3ni2_A 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKP-GACGTVVRNAE-----MK--- 367 (536)
T ss_dssp TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCT-TCCCEECSSCE-----EE---
T ss_pred ccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCC-CCeeEeCCCcE-----EE---
Confidence 9999999999999999999999998 7899999999999976554321 112223344 77888888887 77
Q ss_pred cccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhcc
Q psy8076 472 WLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT 550 (737)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~ 550 (737)
|+| ++|+++|.|+.|||+|+|| +++.|||++++.+.+.|.
T Consensus 368 -----------------------------------i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~p~~t~~~~~- 408 (536)
T 3ni2_A 368 -----------------------------------IVDPETGASLPRNQPGEICIRGD---QIMKGYLNDPEATSRTID- 408 (536)
T ss_dssp -----------------------------------EECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHBC-
T ss_pred -----------------------------------EEeCCCCcCCCCCCccEEEEeCc---ccchhhcCChhHHHhhcc-
Confidence 999 6799999999999999999 999999999999988763
Q ss_pred CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 551 KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 551 ~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
.+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++|+|+..+.
T Consensus 409 -~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~-- 485 (536)
T 3ni2_A 409 -KEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK-- 485 (536)
T ss_dssp -TTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--
T ss_pred -CCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC--
Confidence 37999999999999999999999999999999999999999999999999999999999999899999999998765
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
. ....++|+++++++|+.|++|+.++++++||+|++|
T Consensus 486 ----------~---------------------------------~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~G 522 (536)
T 3ni2_A 486 ----------S---------------------------------QATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSG 522 (536)
T ss_dssp ----------C---------------------------------CCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTS
T ss_pred ----------C---------------------------------CCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCC
Confidence 1 112578999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcC
Q psy8076 711 KTARKSIVDMARN 723 (737)
Q Consensus 711 Ki~R~~l~~~~~~ 723 (737)
|++|++|++++.+
T Consensus 523 Ki~R~~L~~~~~~ 535 (536)
T 3ni2_A 523 KILRKNLKEKLAG 535 (536)
T ss_dssp CBCHHHHHTC---
T ss_pred CeeHHHHHHHhcc
Confidence 9999999998753
No 5
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.3e-78 Score=690.45 Aligned_cols=522 Identities=23% Similarity=0.322 Sum_probs=440.8
Q ss_pred CCCCCCCchhHHHHHHhhhhhc-----cCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEe
Q psy8076 68 TKWFVGGEINACYNAIDRHVER-----GMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI-GVSAGDRVLIYM 141 (737)
Q Consensus 68 ~~~~~~~~~n~~~~~l~~~~~~-----~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~Gd~V~i~~ 141 (737)
..|+.....|++.++|++++++ + ||++|+++.+. .+..+++||+||+++++++|++|.+. |+++||+|+|++
T Consensus 29 ~~~~~~~~~~~~~~~l~~~a~~~~a~~~-p~~~al~~~~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~ 106 (570)
T 3c5e_A 29 GHQEVPAKFNFASDVLDHWADMEKAGKR-PPSPALWWVNG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVL 106 (570)
T ss_dssp CBCCCCSBCCHHHHTHHHHHHHHHTTSS-CCCEEEEEECS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEEC
T ss_pred ccccCCccccHHHHHHHHHHhhccccCC-CCceEEEEEcC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEc
Confidence 3677777888999999999988 8 99999998642 22358999999999999999999999 999999999999
Q ss_pred cCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEE
Q psy8076 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIF 221 (737)
Q Consensus 142 ~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~ 221 (737)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. ...+......++ .++.++++
T Consensus 107 ~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~~~~~ 176 (570)
T 3c5e_A 107 PRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEV---------IQEVDTVASECP-SLRIKLLV 176 (570)
T ss_dssp CSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTT---------HHHHHHHGGGCT-TCCEEEEE
T ss_pred CCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHH---------HHHHHHHhhcCC-ceeEEEEe
Confidence 99999999999999999999999999999999999999999999998752 333444444444 45556655
Q ss_pred ecccccccccCCCCcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHH-HH
Q psy8076 222 QRRCVEEAELTPGYDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT-LA 299 (737)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~-~~ 299 (737)
.... ......+.++...... .......+++++||+||||||| .||||+++|+ .+.. ..
T Consensus 177 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~-~~~~~~~ 236 (570)
T 3c5e_A 177 SEKS-------CDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSG------------LPKMAEHSYS-SLGLKAK 236 (570)
T ss_dssp SSSC-------CTTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSS------------SCCEEEEEHH-HHHHHHH
T ss_pred cccC-------ccccccHHHHhhcccccccccCCCCCCcEEEEECCCCCC------------CCCEEEechH-HHHhhhh
Confidence 4310 1112345555543332 2234467899999999999999 9999999997 5542 23
Q ss_pred HHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHH
Q psy8076 300 WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379 (737)
Q Consensus 300 ~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~ 379 (737)
... ..++++++|++++.+|++|+.++...++.+|..|+++++.+.. .+++..+++.|+++++|+++++|++++.|.
T Consensus 237 ~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 237 MDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP---KFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp HHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS---SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred hhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC---CCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 223 5678899999999999999999766788999999999998742 368999999999999999999999999998
Q ss_pred HcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCC
Q psy8076 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPG 459 (737)
Q Consensus 380 ~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g 459 (737)
+... ...++++||.+++|||++++++.++|.+.++++++|.||+||++..++... .....+ +++|+|+++
T Consensus 313 ~~~~-----~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~----~~~~~~-~~vG~p~~~ 382 (570)
T 3c5e_A 313 QQDL-----SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK----TMKIKP-GYMGTAASC 382 (570)
T ss_dssp TSCT-----TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCT----TSCCCT-TCCCEECTT
T ss_pred hccc-----cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCc----ccccCC-CcccccCCC
Confidence 7632 344688999999999999999999999989999999999999986554321 122344 789999999
Q ss_pred CCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEe-----cCCCCCcc
Q psy8076 460 YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVK-----LPLPPGTM 534 (737)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~-----g~~~~~~~ 534 (737)
++ ++ |+|++|+++|.|+.|||+|+ || +++
T Consensus 383 ~~-----v~--------------------------------------i~d~~g~~~~~G~~GEl~v~~~~~~g~---~v~ 416 (570)
T 3c5e_A 383 YD-----VQ--------------------------------------IIDDKGNVLPPGTEGDIGIRVKPIRPI---GIF 416 (570)
T ss_dssp CC-----EE--------------------------------------EECTTSCBCCTTCCEEEEEECSSBCCT---TCC
T ss_pred ce-----EE--------------------------------------EECCCCCCCCCCCCCeeEEeccCCCCc---hhh
Confidence 88 87 99999999999999999999 87 999
Q ss_pred cccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCC
Q psy8076 535 STLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT 614 (737)
Q Consensus 535 ~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~ 614 (737)
.|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++.
T Consensus 417 ~GY~~~~~~t~~~f~---~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 493 (570)
T 3c5e_A 417 SGYVDNPDKTAANIR---GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV 493 (570)
T ss_dssp CEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred ccccCChhHhhhhhc---CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCC
Confidence 999999999988763 78999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCcee
Q psy8076 615 KGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAA 694 (737)
Q Consensus 615 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 694 (737)
.++.++|+|++.++ .. ....+.+.++|+++++++|+.|++
T Consensus 494 ~g~~~~a~vv~~~~------------~~----------------------------~~~~~~~~~~l~~~l~~~L~~~~~ 533 (570)
T 3c5e_A 494 RGEVVKAFVVLASQ------------FL----------------------------SHDPEQLTKELQQHVKSVTAPYKY 533 (570)
T ss_dssp TEEEEEEEEEECGG------------GT----------------------------TSCHHHHHHHHHHHHHHHSCGGGS
T ss_pred CCeEEEEEEEECCc------------cc----------------------------CcchHHHHHHHHHHHHhhCccccC
Confidence 88999999998764 10 012345678999999999999999
Q ss_pred eeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 695 FKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 695 p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
|+.++++++||+|++||++|++|++.+...
T Consensus 534 P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 534 PRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp CSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred CcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence 999999999999999999999999988643
No 6
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.7e-80 Score=769.01 Aligned_cols=557 Identities=17% Similarity=0.242 Sum_probs=463.0
Q ss_pred ceeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHH
Q psy8076 4 FKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82 (737)
Q Consensus 4 ~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~ 82 (737)
.++.+.++|++++|++.++++ +++|.+++++++++|+..++++ ..+... +..+++..++.+...+ +. .+++++
T Consensus 396 ~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~-~~l~~~-e~~~~~~~~~~~~~~~-~~---~~l~~~ 469 (1304)
T 2vsq_A 396 DEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTI-NLVDDR-EREFLLTGLNPPAQAH-ET---KPLTYW 469 (1304)
T ss_dssp SSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGC-CCCCHH-HHHHHHTTTSCCCCCC-CC---CCHHHH
T ss_pred CcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCcccccccc-CCCCHH-HHHHHHHhcCCCCCCC-CC---CCHHHH
Confidence 357789999999999999999 6689999999999999977765 222222 2234566666543332 22 257899
Q ss_pred HhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEE
Q psy8076 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS 162 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~v 162 (737)
|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|++||
T Consensus 470 ~~~~~~~~-p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~v 542 (1304)
T 2vsq_A 470 FKEAVNAN-PDAPALTYSG------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYL 542 (1304)
T ss_dssp HHHHHHHC-TTSEEEESSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhC-CCCeEEEECC------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence 99999998 9999999876 8999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHH
Q psy8076 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDA 242 (737)
Q Consensus 163 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~ 242 (737)
||+|.+|.+++.++++++++++++++........ .++ .....+++... . .
T Consensus 543 pldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~-------------~~~-~~~~~~~~~~~------------~---~- 592 (1304)
T 2vsq_A 543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA-------------ELP-YTGTTLFIDDQ------------T---R- 592 (1304)
T ss_dssp ECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST-------------TCC-CCSEEEESSCG------------G---G-
T ss_pred EECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh-------------ccC-CCCcEEEeccc------------c---c-
Confidence 9999999999999999999999999876432111 011 11222222111 0 0
Q ss_pred HhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEeccccc
Q psy8076 243 LAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322 (737)
Q Consensus 243 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 322 (737)
.............++++|||+||||||| +||||+++|+++.+. .+ +...++++++|++++.++++|
T Consensus 593 ~~~~~~~~~~~~~~~~~ayiiyTSGSTG------------~PKgV~~~h~~l~~~-~~-~~~~~~~~~~d~~l~~~~~~f 658 (1304)
T 2vsq_A 593 FEEQASDPATAIDPNDPAYIMYTSGTTG------------KPKGNITTHANIQGL-VK-HVDYMAFSDQDTFLSVSNYAF 658 (1304)
T ss_dssp GGSCSSCCCCCCCTTSEEEEEEECCSSS------------SCEEEEEEHHHHHHH-HS-SCCSSCCCTTCEEEECSCTTS
T ss_pred cccccCCCCCCCCCCCeEEEEeCCCCCC------------CCCEEEEehHHHHHH-HH-HHHhcCCCCCCEEEEECCccH
Confidence 0011111223467899999999999999 999999999886543 33 445678899999999999999
Q ss_pred ccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEee
Q psy8076 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVA 402 (737)
Q Consensus 323 ~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~g 402 (737)
+.+ .++++.+|+.|+++++.+... ..++..+++.|+++++|+++++|++++.|...... .+++||.+++|
T Consensus 659 d~~-~~~~~~~l~~G~~l~~~~~~~--~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~-------~~~~lr~~~~g 728 (1304)
T 2vsq_A 659 DAF-TFDFYASMLNAARLIIADEHT--LLDTERLTDLILQENVNVMFATTALFNLLTDAGED-------WMKGLRCILFG 728 (1304)
T ss_dssp THH-HHHHHHHHTTTCEEEECCGGG--TTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH-------HHHTCSEEEEE
T ss_pred HHH-HHHHHHHHHcCCEEEECChhh--cCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh-------cCCCccEEEEe
Confidence 988 567999999999999987543 37899999999999999999999999999875321 35789999999
Q ss_pred cCCCCHHHHHHHHHhcC-CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccc
Q psy8076 403 GEHCDHETKNWAEKSFN-VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVR 481 (737)
Q Consensus 403 Ge~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~ 481 (737)
||++++++.++|.+.++ ..++|.||+||+++.++............. .++|+|++|+. ++
T Consensus 729 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~-~~iG~p~~~~~-----~~------------- 789 (1304)
T 2vsq_A 729 GERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS-LPIGKPISNAS-----VY------------- 789 (1304)
T ss_dssp SSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSS-CCCBEECTTEE-----EE-------------
T ss_pred cCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCC-CCCceeeCCCE-----EE-------------
Confidence 99999999999988875 689999999999987776544211122233 67899998888 77
Q ss_pred ccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC----CCCeee
Q psy8076 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK----FPGYYD 557 (737)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~----~~g~~~ 557 (737)
|+|++++++|.|+.|||+|+|+ ++++||+|+++.|.+.|..+ .++|||
T Consensus 790 -------------------------i~d~~~~~~p~G~~GEl~i~G~---~v~~GY~~~p~~T~~~f~~~p~~~g~~~yr 841 (1304)
T 2vsq_A 790 -------------------------ILNEQSQLQPFGAVGELCISGM---GVSKGYVNRADLTKEKFIENPFKPGETLYR 841 (1304)
T ss_dssp -------------------------EECTTSCBCCTTCCEEEEEEET---TCCCCBTTCHHHHHHHEEECTTSTTCEEEE
T ss_pred -------------------------EECCCcCCCCCCCceEEEEecc---ccCccccCCcccchhhhccCCCCCCCeeEe
Confidence 9999999999999999999999 99999999999999988643 345999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++.+++.+++.++||++....
T Consensus 842 TGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~--------- 912 (1304)
T 2vsq_A 842 TGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ--------- 912 (1304)
T ss_dssp EEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS---------
T ss_pred cCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999888888899999987543
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
. ..++|+++++++||.||+|..++++++||+|+|||+||++|
T Consensus 913 ---~-----------------------------------~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L 954 (1304)
T 2vsq_A 913 ---L-----------------------------------SAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954 (1304)
T ss_dssp ---S-----------------------------------CHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCC
T ss_pred ---C-----------------------------------CHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhc
Confidence 1 14679999999999999999999999999999999999999
Q ss_pred HHHH
Q psy8076 718 VDMA 721 (737)
Q Consensus 718 ~~~~ 721 (737)
++..
T Consensus 955 ~~~~ 958 (1304)
T 2vsq_A 955 PKPD 958 (1304)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7643
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.4e-79 Score=697.86 Aligned_cols=511 Identities=22% Similarity=0.269 Sum_probs=393.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCC--CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPV--TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~--~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~ 155 (737)
++.++|+++++++ ||++|+++.+.. .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 20 ~l~~~l~~~a~~~-p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 20 SLADRIDAAAEKF-GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CTTHHHHHHHHHH-TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC-CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 3678999999998 999999988621 2334899999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCC
Q psy8076 156 RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGY 235 (737)
Q Consensus 156 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~ 235 (737)
++|+++||++|.++.+++.+++++++++++|++.. +...+.......+ ...+++... .
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~---------~~~~~~~~~~~~~--~~~~~~~~~-----------~ 156 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSM---------LYENFKPVLEKTG--VERVFVVGG-----------E 156 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGG---------GHHHHHHHHTTSC--CCEEEEETC-----------S
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChH---------HHHHHHHHHhhCC--CcEEEEeCC-----------C
Confidence 99999999999999999999999999999999875 2344444444332 445555432 2
Q ss_pred cccHHHHHhhcCC-CCCccccC-CCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcE
Q psy8076 236 DILWDDALAQRLS-HRCVPVEA-NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDV 313 (737)
Q Consensus 236 ~~~~~~~~~~~~~-~~~~~~~~-~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~ 313 (737)
...+.+....... .......+ ++++||+||||||| .||||+++|++++....+ +...+++.++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~ 223 (549)
T 3g7s_A 157 VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTG------------MPKGVMLTHFNLAANALQ-LAVATGLSHMDT 223 (549)
T ss_dssp SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-------------CEEEEEEHHHHHHHHHH-HHHHHCCCTTCE
T ss_pred CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccC------------CCceEEEcHHHHHHHHHH-HHHHcCCCCCCE
Confidence 3345555544332 22223344 89999999999999 999999999887666554 455689999999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
+++.+|++|+.++.. ++.++..|+++++.+ .+++..+++.|+++++|+++++|++++.|.+...... ...++
T Consensus 224 ~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~ 295 (549)
T 3g7s_A 224 IVGCMPMFHSAEFGL-VNLMVTVGNEYVVMG-----MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSN--KTYDW 295 (549)
T ss_dssp EECCSCTTSHHHHHH-HTTHHHHCCEEEEES-----SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSC--CCCCC
T ss_pred EEEeCcHHHHHHHHH-HHHHHhcCceEEEcC-----CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhc--ccCCc
Confidence 999999999998766 788999999999987 3799999999999999999999999999987643221 23578
Q ss_pred CCccEEEeecCCCCHHHHHHHHHh----cC---CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcce
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKS----FN---VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~----~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~ 466 (737)
++||.+++||+++++++.+++.+. ++ ..++|.||+||+++.++.... ...... .++|+|+++++
T Consensus 296 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~---~~~~~~-~~~G~p~~~~~----- 366 (549)
T 3g7s_A 296 SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP---LRLDKS-TTQGVPMSDIE----- 366 (549)
T ss_dssp TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG---GGGGGT-TSCCEECTTCE-----
T ss_pred cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc---cccCcC-CCccccCCCCE-----
Confidence 999999999999999999999887 66 789999999999977665432 112233 68889988888
Q ss_pred eeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhH
Q psy8076 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~ 545 (737)
++ |+| ++|++++.|+.|||+|+|| +++.|||++++.+.
T Consensus 367 ~~--------------------------------------i~d~~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~ 405 (549)
T 3g7s_A 367 LK--------------------------------------VISLEDGRELGVGESGEIVIRGP---NIFKGYWKREKENQ 405 (549)
T ss_dssp EE--------------------------------------EECSSSCCEECTTCCEEEEEEST---TSCSEETTCTTGGG
T ss_pred EE--------------------------------------EEeCCCCcCCCCCCceEEEEECc---chhhhhCCChhhhh
Confidence 77 999 8899999999999999999 99999999999999
Q ss_pred HhhccCCCC--eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEE
Q psy8076 546 KIYFTKFPG--YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623 (737)
Q Consensus 546 ~~~~~~~~g--~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 623 (737)
+.|+.+.+| ||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++|+|
T Consensus 406 ~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~v 485 (549)
T 3g7s_A 406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFI 485 (549)
T ss_dssp TSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEE
T ss_pred hhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEE
Confidence 988655567 999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCC
Q psy8076 624 IKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTG 703 (737)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~ 703 (737)
+++++ . ......++|+++++++|+.|++|+.++++++
T Consensus 486 v~~~~------------~-------------------------------~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~ 522 (549)
T 3g7s_A 486 VLKPE------------Y-------------------------------RGKVDEEDIIEWVRERISGYKRVREVEFVEE 522 (549)
T ss_dssp EECST------------T-------------------------------TTSCCHHHHHHHHHTTCC-----CCCCEEEE
T ss_pred EECCC------------c-------------------------------cCcCCHHHHHHHHHHhccCcccceEEEEecc
Confidence 98765 1 0112357899999999999999999999999
Q ss_pred CCCCCCchhhHHHHHHHHcCCC
Q psy8076 704 LPRTRSGKTARKSIVDMARNKP 725 (737)
Q Consensus 704 lP~t~sGKi~R~~l~~~~~~~~ 725 (737)
||+|+|||++|++|++++..+.
T Consensus 523 lP~t~~GKi~R~~L~~~~~~~~ 544 (549)
T 3g7s_A 523 LPRTASGKLLRRLLREKEAEGH 544 (549)
T ss_dssp CC--------------------
T ss_pred CCCCCCcCEeHHHHHHHhhccc
Confidence 9999999999999999987764
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.7e-78 Score=684.32 Aligned_cols=495 Identities=21% Similarity=0.257 Sum_probs=415.3
Q ss_pred HHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCE
Q psy8076 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI 160 (737)
Q Consensus 81 ~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~ 160 (737)
++|++++++. |+++|+..... ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~l~~~~a~~~-p~~~a~~~~~~---~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARLFDKL-DDPHKLAIETA---AGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHHHSCC-SCTTSEEEEET---TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHhC-CCCceEEEecC---CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 4677888887 99998885321 1378999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHH
Q psy8076 161 HSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWD 240 (737)
Q Consensus 161 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~ 240 (737)
++|++|.++.+++.+++++++++++|++...... +........ ..++.+... ....+.
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~---------~~~~~~~~~---~~~~~~~~~----------~~~~~~ 137 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG---------IAAIAAKVG---ATVETLGPD----------GRGSLT 137 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT---------THHHHHHHT---CEEEECCTT----------SCSHHH
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH---------HHHHHhhcC---ceEEEecCC----------cccccc
Confidence 9999999999999999999999999998764321 122222222 123332211 111122
Q ss_pred HHHhh-cCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecc
Q psy8076 241 DALAQ-RLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319 (737)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 319 (737)
+.... ..........+++++||+||||||| .||||+++|++++..... +...++++++|++++.+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~~~~~p 204 (503)
T 4fuq_A 138 DAAAGASEAFATIDRGADDLAAILYTSGTTG------------RSKGAMLSHDNLASNSLT-LVDYWRFTPDDVLIHALP 204 (503)
T ss_dssp HHHHTSCSCCCCCCCCTTSEEEEEECC--CC------------SCCEEEEEHHHHHHHHHH-HHHHTTCCTTCEEEECSC
T ss_pred hhhhcCCCCcCcCCCCCCCeEEEEECCCccc------------CCeEEEEeHHHHHHHHHH-HHHHhCCCCCCEEEEeCC
Confidence 22211 1122334567899999999999999 999999999886666554 556689999999999999
Q ss_pred cccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEE
Q psy8076 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYL 399 (737)
Q Consensus 320 ~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i 399 (737)
++|.+|+...++.+++.|+++++.+. +++..+++.++ ++|+++++|+++..|.+.... ...++++||.+
T Consensus 205 ~~~~~g~~~~~~~~l~~g~~~~~~~~-----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~----~~~~~~~lr~~ 273 (503)
T 4fuq_A 205 IYHTHGLFVASNVTLFARGSMIFLPK-----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL----TKETTGHMRLF 273 (503)
T ss_dssp SSSHCCCCCCHHHHHHTTCEEEECSS-----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC----STTTTTTCCEE
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEcCC-----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc----cccchhhcEEE
Confidence 99999977767889999999999863 78999999998 899999999999999886543 44567899999
Q ss_pred EeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccc
Q psy8076 400 FVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHC 479 (737)
Q Consensus 400 ~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~ 479 (737)
++|||++++++.++|.+.++.+++|.||+||++...+. . ......+ +++|+|++|++ ++
T Consensus 274 ~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~-~---~~~~~~~-~~~G~p~~~~~-----~~----------- 332 (503)
T 4fuq_A 274 ISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSN-P---YDGDRVP-GAVGPALPGVS-----AR----------- 332 (503)
T ss_dssp EECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCC-C---SSSCCCT-TEEEEBCTTCE-----EE-----------
T ss_pred EECCCCCCHHHHHHHHHHhCCCccceEcccccCccccc-C---CCCCCcC-CccccCCCCeE-----EE-----------
Confidence 99999999999999999999999999999999865432 1 1223334 78899999888 77
Q ss_pred ccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeec
Q psy8076 480 VRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDT 558 (737)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~T 558 (737)
|+| ++|+++|.|+.|||+|+|| +++.|||++++.+.+.|.. +|||+|
T Consensus 333 ---------------------------i~d~~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~--~g~~~T 380 (503)
T 4fuq_A 333 ---------------------------VTDPETGKELPRGDIGMIEVKGP---NVFKGYWRMPEKTKSEFRD--DGFFIT 380 (503)
T ss_dssp ---------------------------EECTTTCCBCCTTCCEEEEEEST---TSCCCBTTCHHHHHHTBCT--TSCEEE
T ss_pred ---------------------------EEECCCCCCCcCCCceEEEEECC---chhhhhcCChhhhHhhhCC--CCCeEc
Confidence 999 7899999999999999999 9999999999999988743 789999
Q ss_pred CceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcccc
Q psy8076 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGL 638 (737)
Q Consensus 559 GDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 638 (737)
||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++++++..++.++++|+.+++
T Consensus 381 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~---------- 450 (503)
T 4fuq_A 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG---------- 450 (503)
T ss_dssp EEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT----------
T ss_pred ceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC----------
Confidence 9999999999999999999999999999999999999999999999999999999889999999998765
Q ss_pred ccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHH
Q psy8076 639 IGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIV 718 (737)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~ 718 (737)
.. ....+++++++++|+.|++|+.++++++||+|++||+||++|+
T Consensus 451 --~~---------------------------------~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~ 495 (503)
T 4fuq_A 451 --AT---------------------------------IDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLR 495 (503)
T ss_dssp --CC---------------------------------CCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHH
T ss_pred --CC---------------------------------CCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHH
Confidence 11 1246799999999999999999999999999999999999999
Q ss_pred HHHcC
Q psy8076 719 DMARN 723 (737)
Q Consensus 719 ~~~~~ 723 (737)
+++.+
T Consensus 496 ~~~~~ 500 (503)
T 4fuq_A 496 ETYKD 500 (503)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 99864
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1e-78 Score=692.09 Aligned_cols=502 Identities=21% Similarity=0.289 Sum_probs=420.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~~~-p~~~A~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 26 TFGDLLRDRAAKY-GDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp CHHHHHHHHHHHH-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC-CCCEEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 4788999999998 9999999876 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|+++.... ..+...+......++ ..+.+++.... .
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~-~----------- 161 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG----FDYRSLARQVQSKLP-TLKNIIVAGEA-E----------- 161 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT----EEHHHHHHHHHHHCT-TCCCEEEESCC-T-----------
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc----ccHHHHHHHHHhcCC-CccEEEEcCCc-c-----------
Confidence 999999999999999999999999999999875311 112233344444444 44555543321 0
Q ss_pred cHHHHHhhcC-CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 238 LWDDALAQRL-SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
.+.++..... ........+++++|++||||||| .||||+++|++++....+ +...++++++|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~~~~~~~~-~~~~~~~~~~d~~l~ 228 (539)
T 1mdb_A 162 EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTG------------LSKLIPRTHDDYIYSLKR-SVEVCWLDHSTVYLA 228 (539)
T ss_dssp TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSS------------SCCEEEEEHHHHHHHHHH-HHHHHTCCTTCEEEE
T ss_pred chhhhhhccccccccCCCCcCceEEEEeCCCcCC------------CCcEEEEehHHHHHHHHH-HHHhhCCCCCCEEEE
Confidence 0111111111 11223467899999999999999 999999999987666554 455688999999999
Q ss_pred ecccccccchhh-hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 317 ASDMGWVVGHSY-ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 317 ~~~~~~~~g~~~-~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
.+|++|++++.. .++.+|+.|+++++.+. +++..+++.|+++++|+++++|+++..|.+.... ...++++
T Consensus 229 ~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l~~ 299 (539)
T 1mdb_A 229 ALPMAHNYPLSSPGVLGVLYAGGRVVLSPS-----PSPDDAFPLIEREKVTITALVPPLAMVWMDAASS----RRDDLSS 299 (539)
T ss_dssp CSCTTSHHHHHSSHHHHHHHTTCEEEECSS-----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH----CCCCCTT
T ss_pred eecccccchhhHHHHHHHHHhCCEEEECCC-----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccc----cCCCccc
Confidence 999999998754 68999999999999863 6899999999999999999999999999876432 3447899
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCC-CCCcceeeeecccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY-DGKYVNIVMLNWLD 474 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~~~~~~~~~~~~ 474 (737)
||.+++|||++++++.+++.+.+++.++|.||+||++..++... ....... .++|+|+++. + ++
T Consensus 300 lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~---~~~~~~~-~~~G~p~~~~~~-----~~------ 364 (539)
T 1mdb_A 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLD---DPEEIIV-NTQGKPMSPYDE-----SR------ 364 (539)
T ss_dssp CCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTT---SCHHHHH-HCCCEESSTTCE-----EE------
T ss_pred eeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCC---CcHHhcC-CCCCcccCCCce-----EE------
Confidence 99999999999999999999999999999999999764332211 0011122 5788888653 4 55
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g 554 (737)
|+|++|+++|.|+.|||+|+|| +++.|||++++.+.+.|.. +|
T Consensus 365 --------------------------------i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~--~g 407 (539)
T 1mdb_A 365 --------------------------------VWDDHDRDVKPGETGHLLTRGP---YTIRGYYKAEEHNAASFTE--DG 407 (539)
T ss_dssp --------------------------------EECTTSCBCCTTCCEEEEEECT---TSCSSCTTCHHHHHHHBCT--TS
T ss_pred --------------------------------EECCCCCCCcCCCcceEEeeCc---ccchhhcCChhhhhhhccC--CC
Confidence 9999999999999999999999 9999999999999888754 78
Q ss_pred eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCC
Q psy8076 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMG 634 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 634 (737)
||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|++++.
T Consensus 408 ~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~------ 481 (539)
T 1mdb_A 408 FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE------ 481 (539)
T ss_dssp CEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS------
T ss_pred CeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCC------
Confidence 99999999999999999999999999999999999999999999999999999999998889999999998643
Q ss_pred ccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHh-cCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 635 FSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREA-IGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. . ..++|+++++++ ||.|++|+.++++++||+|++||++
T Consensus 482 ------~------------------------------~----~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~ 521 (539)
T 1mdb_A 482 ------A------------------------------P----KAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVS 521 (539)
T ss_dssp ------C------------------------------C----CHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBC
T ss_pred ------C------------------------------C----CHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEe
Confidence 0 0 256799999997 9999999999999999999999999
Q ss_pred HHHHHHHHcC
Q psy8076 714 RKSIVDMARN 723 (737)
Q Consensus 714 R~~l~~~~~~ 723 (737)
|++|++++.+
T Consensus 522 r~~L~~~~~~ 531 (539)
T 1mdb_A 522 KKALREAISE 531 (539)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.8e-78 Score=686.44 Aligned_cols=500 Identities=20% Similarity=0.278 Sum_probs=417.5
Q ss_pred chhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 75 EINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 75 ~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
...++.++|+++++++ |+++|+++.+ ...++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 14 ~~~~l~~~l~~~a~~~-p~~~A~~~~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 88 (517)
T 3r44_A 14 KMKNIGWMLRQRATVS-PRLQAYVEPS----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGA 88 (517)
T ss_dssp GGGCHHHHHHHHHHHS-TTSEEEEEGG----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhC-CCCeEEEeCC----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHH
Confidence 3446889999999998 9999999875 2359999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC
Q psy8076 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 155 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~ 234 (737)
+++|+++||++|.++.+++.+++++++++++|++.. ....+.......+ ....++.+..
T Consensus 89 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~----------- 147 (517)
T 3r44_A 89 AKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAP---------SAPVIDAIRAQAD-PPGTVTDWIG----------- 147 (517)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGG---------GHHHHHHHHHSSS-CCTTCCEEEE-----------
T ss_pred HHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCc---------hHHHHHHHHhccC-CccEEEEccC-----------
Confidence 999999999999999999999999999999999864 2334444433333 2222221111
Q ss_pred CcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcE
Q psy8076 235 YDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDV 313 (737)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~ 313 (737)
...+.+....... .......+++++||+||||||| .||||+++|++++..... +...++++++|+
T Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~ 213 (517)
T 3r44_A 148 -ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTG------------HPKGVVHTHESVHSAASS-WASTIDVRYRDR 213 (517)
T ss_dssp -HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---------------CCEEEEEEHHHHHHHHHH-HHHHSCCCTTCE
T ss_pred -cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccc------------cCceeeeeHHHHHHHHHH-HHHhcCCCCCCE
Confidence 1123333332222 3334567899999999999999 999999999886666554 456689999999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
+++.+|++|+.++...++ +++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+.... ...++
T Consensus 214 ~l~~~p~~~~~~~~~~~~-~~~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~ 283 (517)
T 3r44_A 214 LLLPLPMFHVAALTTVIF-SAMRGVTLISMPQ-----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF----AELDA 283 (517)
T ss_dssp EEECSCTTSHHHHHHHHH-HHHHTCEEEECSS-----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH----HHCCC
T ss_pred EEEeCchHHHHHHHHHHH-HHhcCeEEEEeCC-----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc----ccCCC
Confidence 999999999999765444 4449999999863 7999999999999999999999999999876432 34578
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
++||.+++|||++++++.+++.+. +.+++|.||+||+++..+.... ....... +++|+|+++++ ++
T Consensus 284 ~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~--~~~~~~~-~~~G~~~~~~~-----~~----- 349 (517)
T 3r44_A 284 PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLS--EDALRKA-GSAGRATMFTD-----VA----- 349 (517)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECG--GGTTTTT-TCCBEECTTEE-----EE-----
T ss_pred CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCC--ccccccC-CCCCcCCCCeE-----EE-----
Confidence 899999999999999999999887 8999999999999876665432 1222333 78888888877 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
|+|++|.+++.| .|||+|+|| +++.|||++++.+.+.| .+
T Consensus 350 ---------------------------------i~d~~~~~~~~g-~GEl~v~g~---~v~~GY~~~p~~t~~~f---~~ 389 (517)
T 3r44_A 350 ---------------------------------VRGDDGVIREHG-EGEVVIKSD---ILLKEYWNRPEATRDAF---DN 389 (517)
T ss_dssp ---------------------------------EECTTSCEESSE-EEEEEEEET---TSCSEETTCHHHHHHTE---ET
T ss_pred ---------------------------------EECCCCCCCCCC-CeEEEEeCc---chhhhhCCChhhhHhhh---cC
Confidence 999999999999 899999999 99999999999998887 37
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++| ..++
T Consensus 390 g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~----- 463 (517)
T 3r44_A 390 GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQ----- 463 (517)
T ss_dssp TEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECT-----
T ss_pred CCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCC-----
Confidence 9999999999999999999999999999999999999999999999999999999999998888888888 4433
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. ....++|+++++++||.|++|+.++++++||+|++||++
T Consensus 464 -------~---------------------------------~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~ 503 (517)
T 3r44_A 464 -------N---------------------------------EVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKIL 503 (517)
T ss_dssp -------T---------------------------------TCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBC
T ss_pred -------C---------------------------------CCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCcc
Confidence 0 112478999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q psy8076 714 RKSIVDMARNK 724 (737)
Q Consensus 714 R~~l~~~~~~~ 724 (737)
|++|++++.+.
T Consensus 504 R~~L~~~~~~~ 514 (517)
T 3r44_A 504 KTVLREQYSAT 514 (517)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 11
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=4.7e-78 Score=695.06 Aligned_cols=480 Identities=18% Similarity=0.197 Sum_probs=396.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 28 tl~~~~~~~a~~~-Pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 28 TVVARFSEMAALH-PHREAIRDRF------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CHHHHHHHHHHHC-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhC-CCCeEEEcCC------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 5789999999999 9999999987 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|+++||++|.++.+++.+++++++++++++++....... ... .+.+.
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~-----------------~~~-~~~~~--------------- 147 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN-----------------GLP-CVPVR--------------- 147 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT-----------------TSC-EEEGG---------------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc-----------------CCc-eeeec---------------
Confidence 999999999999999999999999999997654321110 000 00000
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
...............+++++||+||||||| .||||+++|+++.....+ ...+++.++|++++.
T Consensus 148 ---~~~~~~~~~~~~~~~~~d~a~iiyTSGSTG------------~PKgV~~th~~l~~~~~~--~~~~~~~~~d~~l~~ 210 (620)
T 4dg8_A 148 ---HLPAAPASVARPCFAADQIAYINFSSGTTG------------RPKAIACTHAGITRLCLG--QSFLAFAPQMRFLVN 210 (620)
T ss_dssp ---GCCCCCCCSSCCCCCTTSEEEEEEEBSSSS------------SCEEEEEEHHHHHHHHSS--CGGGTTCTTCEEEEC
T ss_pred ---cCCcCCccccCCCCCCCCeEEEEECCCccc------------cCeEEEEchHHHHHHHHH--HHhhCCCCCCEEEEE
Confidence 000000111222356899999999999999 999999999886554432 455788999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
+|++|+.+. +.++.+|+.|+++++.+.. ..++..+++.|+++++|+++++|++++.|.+... .++++||
T Consensus 211 ~p~~~~~~~-~~~~~~l~~G~~~v~~~~~---~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------~~l~~lr 279 (620)
T 4dg8_A 211 SPLSFDAAT-LEIWGALLNGGCCVLNDLG---PLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------DCLGGLR 279 (620)
T ss_dssp SCTTSTHHH-HHHHHHHTTTCEEEECCSS---SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------GGGTTCS
T ss_pred CccCHHHHH-HHHHHHHhcCCEEEeCccc---cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------hhCCCcc
Confidence 999999995 5689999999999997532 4699999999999999999999999999987532 2578999
Q ss_pred EEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
.+++|||+++++..+++.+.+ +++++|.||+||+++.+++............ .++|+|++|++ ++
T Consensus 280 ~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~-~~iG~p~~~~~-----~~-------- 345 (620)
T 4dg8_A 280 QLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD-IPIGKAIAGTA-----VL-------- 345 (620)
T ss_dssp EEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSS-CCCBEECTTEE-----EE--------
T ss_pred EEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCC-CCceecccCcE-----EE--------
Confidence 999999999999888877665 7899999999999987766544222222333 68899998888 77
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCc-cCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC--
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSE-CEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP-- 553 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~-~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~-- 553 (737)
|+|+++++ +|.|+.|||+|+|| ++++|||++++.|.+.|.....
T Consensus 346 ------------------------------i~d~~~~~~~~~g~~GEl~i~G~---~v~~GY~~~p~~t~~~f~~~p~~~ 392 (620)
T 4dg8_A 346 ------------------------------LLDEHGQEIAEPDRAGEIVAFGA---GLAQGYRNDAARTRASFVELPYRG 392 (620)
T ss_dssp ------------------------------EECTTSCBCCSSSCCEEEEEEET---TCCSEETTCHHHHHHHEEEEEETT
T ss_pred ------------------------------EECccCCCCCCCCCceEEEEecc---ccccccCCChhhhhhhhccCCCCC
Confidence 99999888 78999999999999 9999999999999998865311
Q ss_pred ---CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 554 ---GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 554 ---g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
+||||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++.+++..++ ++++++....
T Consensus 393 ~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~~-- 469 (620)
T 4dg8_A 393 RLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKAD-- 469 (620)
T ss_dssp EEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECTT--
T ss_pred CCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecChH--
Confidence 6999999999999999999999999999999999999999999999999999999998874444 4455443322
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
.+++.++++||.||+|+.++++++||+|+||
T Consensus 470 -------------------------------------------------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~G 500 (620)
T 4dg8_A 470 -------------------------------------------------ASPQALLRQLPTWQRPHACVRVEALPLTAHG 500 (620)
T ss_dssp -------------------------------------------------CCCHHHHHHSCGGGSCSEEEECSSCCCC---
T ss_pred -------------------------------------------------HHHHHHHHhChhhcCCcEEEEECcCCCCccc
Confidence 1334567789999999999999999999999
Q ss_pred hhhHHHHHHHHcCC
Q psy8076 711 KTARKSIVDMARNK 724 (737)
Q Consensus 711 Ki~R~~l~~~~~~~ 724 (737)
|+||++|++++...
T Consensus 501 KidR~~L~~~~~~~ 514 (620)
T 4dg8_A 501 KLDRAALLRRLEEP 514 (620)
T ss_dssp -CCHHHHHHHTCSC
T ss_pred CHhHHHHhhccccc
Confidence 99999999987653
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.4e-77 Score=675.65 Aligned_cols=486 Identities=21% Similarity=0.271 Sum_probs=407.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 3 tl~~~l~~~a~~~-p~~~a~~~~~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 3 TVNEMLRRAATRA-PDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CHHHHHHHHHHHC-TTSEEEEETT----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCceEEEEcC----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 4678999999998 9999999862 1289999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEE--cCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCC
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIA--ASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGY 235 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~ 235 (737)
|++++|++|.++.+++.+++++++++++++ +... ...+ ....+ ..+ ++.+
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~---~~~~~-~~~-~~~~-------------- 129 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAI---FQSGS-GAR-IIFL-------------- 129 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHH---HHHCC-CCE-EEEG--------------
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhh---------hhhh---hhccc-cce-eEEe--------------
Confidence 999999999999999999999999999999 5431 1111 12222 111 1111
Q ss_pred cccHHHHHhh------cCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcC-
Q psy8076 236 DILWDDALAQ------RLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM- 308 (737)
Q Consensus 236 ~~~~~~~~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~- 308 (737)
.++... ..........+++++||+||||||| .||||+++|+++.....+ +...+++
T Consensus 130 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~sh~~~~~~~~~-~~~~~~~~ 192 (504)
T 1t5h_X 130 ----GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTG------------LPKAAIIPQRAAESRVLF-MSTQVGLR 192 (504)
T ss_dssp ----GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---------------CCCEEEEEGGGHHHHHHH-HHHTTCCC
T ss_pred ----cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCC------------CCCEEEecHHHHHHHHHH-HHHhhCCC
Confidence 111111 1111113456799999999999999 999999999987766554 4455777
Q ss_pred -CCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 309 -GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 309 -~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
+++|++++.+|++|+.++...++.+|..|+++++.+. +++..+++.|+++++|+++++|++++.|.+......
T Consensus 193 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~- 266 (504)
T 1t5h_X 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE-----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG- 266 (504)
T ss_dssp SSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS-----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT-
T ss_pred CCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC-----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc-
Confidence 8899999999999999976778999999999999863 689999999999999999999999999987642211
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCccee
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNI 467 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~ 467 (737)
...++++||.+++|||++++++.++|.+.++..++|.||+||++. +.... .... +++|.|.++++ +
T Consensus 267 -~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~------~~~~-~~~g~p~~~~~-----~ 332 (504)
T 1t5h_X 267 -SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR------QPKT-GTEMAPGFFSE-----V 332 (504)
T ss_dssp -CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE------SCSS-SSEEBCCTTCC-----E
T ss_pred -ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc------CCCC-CccccCCCCCc-----e
Confidence 344689999999999999999999999999999999999999942 22211 1233 78899998888 7
Q ss_pred eeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCC---CccCCCcceEEEEe-cCCCCCcccccccChhh
Q psy8076 468 VMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDG---SECEPHELGRIVVK-LPLPPGTMSTLYKAPQR 543 (737)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g---~~~~~g~~GEL~i~-g~~~~~~~~gy~~~~~~ 543 (737)
+ |+|+++ ++++.|+.|||+|+ || +++.||+++++.
T Consensus 333 ~--------------------------------------i~~~~~~~~~~~~~g~~GEl~v~gg~---~~~~GY~~~~~~ 371 (504)
T 1t5h_X 333 R--------------------------------------IVRIGGGVDEIVANGEEGELIVAASD---SAFVGYLNQPQA 371 (504)
T ss_dssp E--------------------------------------EECTTSCTTCBCCTTCCEEEEEECCT---TSCCCBTTCHHH
T ss_pred e--------------------------------------EEeccCCCCCcCCCCCcceEEEeCCc---eeeceecCCchh
Confidence 7 999887 99999999999999 88 899999999999
Q ss_pred hHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEE
Q psy8076 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623 (737)
Q Consensus 544 ~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 623 (737)
+.+.| .+|||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|
T Consensus 372 t~~~f---~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~v 448 (504)
T 1t5h_X 372 TAEKL---QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACV 448 (504)
T ss_dssp HHHHE---ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEE
T ss_pred hhhhh---cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEE
Confidence 98887 379999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcC
Q psy8076 624 IKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVT 702 (737)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~ 702 (737)
+++++ .. . ..++|++++++ +|+.|++|+.+++++
T Consensus 449 v~~~~------------~~-----------------------------~----~~~~l~~~~~~~~L~~~~~P~~i~~v~ 483 (504)
T 1t5h_X 449 VPRLG------------ET-----------------------------L----SADALDTFCRSSELADFKRPKRYFILD 483 (504)
T ss_dssp EECTT------------CC-----------------------------C----CHHHHHHHHHTSSCCGGGSCSEEEECS
T ss_pred EecCC------------cC-----------------------------c----CHHHHHHHHhhccCcccccceEEEEhh
Confidence 98765 10 1 24678999998 999999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHc
Q psy8076 703 GLPRTRSGKTARKSIVDMAR 722 (737)
Q Consensus 703 ~lP~t~sGKi~R~~l~~~~~ 722 (737)
+||+|++||++|++|++++.
T Consensus 484 ~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 484 QLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp CCCBCTTSCBCHHHHHHHHC
T ss_pred hCCCCCCCCEeHHHHHHHhc
Confidence 99999999999999999874
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.9e-77 Score=677.93 Aligned_cols=499 Identities=18% Similarity=0.255 Sum_probs=415.8
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++++ ||++|+++.+ +++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~~~-p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 3 LLEQIEKWAAET-PDQTAFVWRD------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHHHS-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-CCceEEEeCC------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 578899999998 9999999987 899999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++.++++++++++++++...... .....++ .. ..
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~-------------------~~~~~~~-~~-------------~~ 122 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT-------------------DLPVRIV-SE-------------DN 122 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS-------------------CCSSEEE-ET-------------HH
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc-------------------cccccee-ch-------------hh
Confidence 999999999999999999999999999998543211 0000010 00 00
Q ss_pred HHHHHhhcC---CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 239 WDDALAQRL---SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
+.+...... ........++++++|+||||||| .||||+++|++++....+ ....++++++|+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l 189 (512)
T 3fce_A 123 LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTG------------NPKGVQITYNCLVSFTKW-AVEDFNLQTGQVFL 189 (512)
T ss_dssp HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----------------CEEEEEEHHHHHHHHHH-HHHHTTCCSSCEEE
T ss_pred hhhhcccccccCCCccccCCCCCeEEEEECCCCCC------------CCceEEEehHHHHHHHHH-HHHhcCCCCCCEEE
Confidence 111111111 11233467899999999999999 999999999887666554 55668999999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|+.++ +.++.+++.|+++++.+... ..++..+++.++++++|++.++|+++..+...... ...++++
T Consensus 190 ~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 262 (512)
T 3fce_A 190 NQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDM--IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF----SESMLPN 262 (512)
T ss_dssp ECSCTTSGGGH-HHHHHHHHTTCEEEECCHHH--HHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC----STTTSTT
T ss_pred EeCCccHhHHH-HHHHHHHhCCCEEEECCHHH--hhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc----cchhCcc
Confidence 99999999995 45899999999999986421 15789999999999999999999999998776543 4457889
Q ss_pred ccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCC-CCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQH-DTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
||.+++|||++++++.+++.+.+ ++.++|.||+||+++.++........ ..... .++|+|+++++ ++
T Consensus 263 lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~-----~~----- 331 (512)
T 3fce_A 263 MKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKS-LPVGYCKSDCR-----LL----- 331 (512)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSS-CCCEEECTTCE-----EE-----
T ss_pred ccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCC-CccccccCCcE-----EE-----
Confidence 99999999999999999999998 78999999999999776654321110 11223 67888888877 76
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhcc-CC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT-KF 552 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~-~~ 552 (737)
|+|++|+++++|+.|||+|+|| +++.|||++++.+.+.|.. +.
T Consensus 332 ---------------------------------i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~ 375 (512)
T 3fce_A 332 ---------------------------------IMKEDGTIAPDGEKGEIVIVGP---SVSVGYLGSPELTEKAFTMIDG 375 (512)
T ss_dssp ---------------------------------EECSSSCBCCTTSCEEEEEEST---TSCSCBTTCHHHHHHHEEEETT
T ss_pred ---------------------------------EECCCCCCCCCCCeEEEEEecc---ccChhhcCCchhhhhccccCCC
Confidence 9999999999999999999999 9999999999999888742 33
Q ss_pred CCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCc
Q psy8076 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632 (737)
Q Consensus 553 ~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 632 (737)
+|||+|||+|++ +||+++|+||.||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|++.+.
T Consensus 376 ~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~---- 450 (512)
T 3fce_A 376 ERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH---- 450 (512)
T ss_dssp EEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC----
T ss_pred CEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc----
Confidence 569999999999 899999999999999999999999999999999999999999999988888899999998765
Q ss_pred CCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchh
Q psy8076 633 MGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKT 712 (737)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi 712 (737)
.. .....+.++|+++++++||.|++|+.++++++||+|++||+
T Consensus 451 --------~~-----------------------------~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi 493 (512)
T 3fce_A 451 --------SF-----------------------------EKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKV 493 (512)
T ss_dssp --------CC-----------------------------SSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSB
T ss_pred --------cc-----------------------------cchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcCh
Confidence 11 22345678899999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCCC
Q psy8076 713 ARKSIVDMARNKPL 726 (737)
Q Consensus 713 ~R~~l~~~~~~~~~ 726 (737)
+|++|++.+.+.+.
T Consensus 494 ~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 494 DRKKLLSEVTALEH 507 (512)
T ss_dssp CHHHHHHHHHC---
T ss_pred HHHHHHhhhhhccc
Confidence 99999999987653
No 14
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.4e-78 Score=687.61 Aligned_cols=505 Identities=20% Similarity=0.267 Sum_probs=331.1
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 32 l~~~l~~~a~~~-p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 104 (544)
T 3o83_A 32 LTRILTVGVQSH-PHSLAIICGE------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG 104 (544)
T ss_dssp TTHHHHHHHHHC-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCceEEEcCC------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 678999999998 9999999886 999999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++.+++++++++++|+++.... ......+........ ....++++... .....
T Consensus 105 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~ 170 (544)
T 3o83_A 105 VVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV----FSNNQFIDSLHDVNL-SPEIILMLNHQ---------ATDFG 170 (544)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG----GSSSHHHHHHHHTTC-CCSEEEEETCC---------TTSEE
T ss_pred cEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc----ccHHHHHHHHhhccc-CcceEEEecCC---------ccccc
Confidence 99999999999999999999999999999875321 111233333333333 45555554332 01122
Q ss_pred HHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 239 WDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 239 ~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
+.+....... .......+++++||+||||||| .||||+++|++++....+ ....++++++|++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~sh~~~~~~~~~-~~~~~~~~~~d~~l~ 237 (544)
T 3o83_A 171 LLDWIETPAETFVDFSSTPADEVAFFQLSGGSTG------------TPKLIPRTHNDYDYSVRA-SAEICGLNSNTRLLC 237 (544)
T ss_dssp HHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--C------------CCCEEEEEHHHHHHHHHH-HHHHTTCCTTCEEEE
T ss_pred hhhhhhcccccccccccCCccceEEEEECCCccc------------CCceEEechHHHHHHHHH-HHHHhCCCCCCeEEE
Confidence 3333332222 1224567899999999999999 999999999887666655 556689999999999
Q ss_pred ecccccccchhh-hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 317 ASDMGWVVGHSY-ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 317 ~~~~~~~~g~~~-~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
.+|++|.+++.. .++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|.+.... ...++++
T Consensus 238 ~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 308 (544)
T 3o83_A 238 ALPAPHNFMLSSPGALGVLHAGGCVVMAPN-----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ----YKDQIQS 308 (544)
T ss_dssp CSCTTSHHHHHSSHHHHHHHTTCEEEECSS-----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT----THHHHTT
T ss_pred ecCcceEeecchHHHHHHHHcCCEEEECCC-----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh----ccccCCc
Confidence 999999888654 57899999999999873 6899999999999999999999999999886543 3346789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCc-CCCCCCcceeeeecccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF-PGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~-~g~~~~~~~~~~~~~~~ 474 (737)
||.+++|||++++++.+++.+.++++++|.||+||++..++.... ...... .++|+|+ +++. ++
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~---~~~~~~-~~~G~p~~~~~~-----~~------ 373 (544)
T 3o83_A 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDD---SDEQIF-TTQGRPISSDDE-----IK------ 373 (544)
T ss_dssp CCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTS---CHHHHH-HCCCEESCTTCE-----EE------
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCC---chhhcc-CCCceecCCCcE-----EE------
Confidence 999999999999999999999999999999999998754433211 111112 5678885 6666 66
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g 554 (737)
|+|++|+++|+|+.|||+|+|| +++.|||++++.+.+.|.. +|
T Consensus 374 --------------------------------i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~--~g 416 (544)
T 3o83_A 374 --------------------------------IVDEQYREVPEGEIGMLATRGP---YTFCGYYQSPEHNSQVFDE--DN 416 (544)
T ss_dssp --------------------------------EECTTSCBCCTTCCEEEEEECT---TSCSCCTTCHHHHHHHBCT--TC
T ss_pred --------------------------------EECCCCCCCCCCCeeEEEEecC---CcchhhcCChhhhhhhCCC--CC
Confidence 9999999999999999999999 9999999999999888733 79
Q ss_pred eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCC
Q psy8076 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMG 634 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 634 (737)
||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.++|+|+.++.
T Consensus 417 ~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~------ 490 (544)
T 3o83_A 417 YYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNP------ 490 (544)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEC---------------------------------------------------------
T ss_pred CeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999889999999987654
Q ss_pred ccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 635 FSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
.....++++++++ .|+.|++|+.++++++||+|++||+|
T Consensus 491 ----------------------------------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~ 530 (544)
T 3o83_A 491 ----------------------------------------ELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVD 530 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------CCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCc
Confidence 1234568888888 79999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q psy8076 714 RKSIVDMARNK 724 (737)
Q Consensus 714 R~~l~~~~~~~ 724 (737)
|++|++++...
T Consensus 531 r~~L~~~~~~~ 541 (544)
T 3o83_A 531 KKQLRSILNTS 541 (544)
T ss_dssp -----------
T ss_pred HHHHHHHHhhc
Confidence 99999998754
No 15
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.7e-76 Score=682.72 Aligned_cols=502 Identities=22% Similarity=0.298 Sum_probs=420.2
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 29 l~~~~~~~a~---pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 29 LTDILTRHAA---SDSIAVIDGE------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TTHHHHTTTT---CCSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhC---CCCeEEecCC------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 6788988875 9999999886 999999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
+++||++|.++.+++.++++++++++++++..... ......+.......+ ....+.+.... ....
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~ 164 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHAL----FSGDDFLNTFVTEHS-SIRVVQLLNDS----------GEHN 164 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGG----GSSSHHHHHHHHHST-TCCEEEEETCC----------STTB
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccc----cccHHHHHHHhhcCC-ccceeeecccc----------cccc
Confidence 99999999999999999999999999999875421 111122333333333 44444443322 1223
Q ss_pred HHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 239 WDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
+.+....... ....+..++++|||+||||||| .||||+++|++++....+ ....+++.++|++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG------------~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~l~~ 231 (617)
T 3rg2_A 165 LQDAINHPAEDFTATPSPADEVAYFQLSGGTTG------------TPKLIPRTHNDYYYSVRR-SVEICQFTQQTRYLCA 231 (617)
T ss_dssp HHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSS------------SCCEEEEEHHHHHHHHHH-HHHHHTCCTTCEEEEC
T ss_pred hhhhhcccccccCCCCCCCCCeEEEEECCCcCC------------CCCEeehhHHHHHHHHHH-HHHhcCCCCcceEEEe
Confidence 3333332222 2334567899999999999999 999999999887666655 5566899999999999
Q ss_pred cccccccchhh-hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 318 SDMGWVVGHSY-ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 318 ~~~~~~~g~~~-~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
+|++|.+++.. +++.+|+.|+++++.+. .++..+++.++++++|++.++|+++..|.+...... ...++++|
T Consensus 232 ~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~l~~l 304 (617)
T 3rg2_A 232 IPAAHNYAMSSPGSLGVFLAGGTVVLAAD-----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE--SRAQLASL 304 (617)
T ss_dssp SCTTSHHHHHSSHHHHHHHHTCEEEECSS-----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC--CTTTTTTC
T ss_pred ccchhhhhhhHHHHHHHHHcCCEEEEeCC-----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc--ccccCCCc
Confidence 99998887653 68899999999999863 689999999999999999999999999987543221 33368899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCc-CCCCCCcceeeeeccccC
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF-PGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~-~g~~~~~~~~~~~~~~~~ 475 (737)
|.+++|||++++++.+++.+.++++++|.||+||++..++.... ...... .++|+|+ ++.. ++
T Consensus 305 r~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~~~~~-~~~G~p~~~~~~-----~~------- 368 (617)
T 3rg2_A 305 KLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDD---SAEKII-HTQGYPMCPDDE-----VW------- 368 (617)
T ss_dssp CEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTS---CHHHHH-HCCCEESCTTCE-----EE-------
T ss_pred cEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCC---cccccc-cCCCccCCCCce-----EE-------
Confidence 99999999999999999999999999999999999865443211 111111 4677776 5555 66
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
|+|++|+++|.|+.|||+|+|| ++++||+++++.+.+.|.. +||
T Consensus 369 -------------------------------i~d~~~~~~p~G~~GEl~i~G~---~v~~GY~~~p~~t~~~f~~--~~~ 412 (617)
T 3rg2_A 369 -------------------------------VADAEGNPLPQGEVGRLMTRGP---YTFRGYYKSPQHNASAFDA--NGF 412 (617)
T ss_dssp -------------------------------EECTTSCBCCTTCCEEEEEECS---SSCSCCTTCHHHHHHHBCT--TSC
T ss_pred -------------------------------EECCCCCCCCCCCceEEEecCc---cccchhcCChhhhhhccCC--CCc
Confidence 9999999999999999999999 9999999999999998844 789
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++++..+.
T Consensus 413 yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~------- 485 (617)
T 3rg2_A 413 YCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP------- 485 (617)
T ss_dssp EEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC-------
T ss_pred eecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999998888999999998764
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCCCCCchhhH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPRTRSGKTAR 714 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~sGKi~R 714 (737)
. ...++++++++ .||.||+|..++++++||+|+|||+||
T Consensus 486 -----~-----------------------------------~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR 525 (617)
T 3rg2_A 486 -----L-----------------------------------RAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDK 525 (617)
T ss_dssp -----C-----------------------------------CHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCH
T ss_pred -----C-----------------------------------CHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcH
Confidence 1 14678889988 699999999999999999999999999
Q ss_pred HHHHHHHcC
Q psy8076 715 KSIVDMARN 723 (737)
Q Consensus 715 ~~l~~~~~~ 723 (737)
++|++++..
T Consensus 526 ~~L~~~~~~ 534 (617)
T 3rg2_A 526 KQLRQWLAS 534 (617)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998753
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.6e-76 Score=670.03 Aligned_cols=496 Identities=19% Similarity=0.223 Sum_probs=420.3
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI-GVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
+.++|+++++++ ||++|+++.+ +++||+||+++++++|++|.+. |+++|++|+++++|++++++++|||+++
T Consensus 3 l~~~l~~~a~~~-p~~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 3 LLHAIQTHAETY-PQTDAFRSQG------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHHHS-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCeEEEcCC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 578899999998 9999999876 9999999999999999999885 8889999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++.+++++++++++|+++....... . . ....+
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~---------------~-~------------------~~~~~ 121 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAV---------------G-Q------------------QIQTV 121 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCC---------------C-C------------------SSCEE
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhc---------------c-c------------------cccee
Confidence 999999999999999999999999999999754321000 0 0 00112
Q ss_pred cHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
.+.++...... .......+++++||+||||||| .||||+++|++++....+ +...++++.+|+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l 188 (511)
T 3e7w_A 122 SAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTG------------NPKGVQISAANLQSFTDW-ICADFPVSGGKIFL 188 (511)
T ss_dssp EHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTS------------SCEEEEEEHHHHHHHHHH-HHHHSTTTTTCEEE
T ss_pred cHhhhhccccCCccccccCCCCCeEEEEECCCCCC------------CCCEEEEcHHHHHHHHHH-HHHhcCCCccceEE
Confidence 23333322211 1223356789999999999999 999999999887666555 45568899999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|+.++ +.++.+|..|+++++.+... ..++..+++.++++++|++.++|++++.+...... ....+++
T Consensus 189 ~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 261 (511)
T 3e7w_A 189 NQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDA--VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF----SQDLLPH 261 (511)
T ss_dssp ECSCTTSTHHH-HHHHHHHHTTCEEEECCHHH--HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC----STTTCTT
T ss_pred EeCCccHHHHH-HHHHHHHhcCCEEEEcChhh--hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc----ccccCCc
Confidence 99999999985 45899999999999976421 15789999999999999999999999999876543 4456889
Q ss_pred ccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCC-CCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQH-DTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
+|.+++|||++++++.+++.+.+ +.+++|.||+||+++.++........ ..... .++|+|+++++ ++
T Consensus 262 l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~-----~~----- 330 (511)
T 3e7w_A 262 ADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSES-LPVGFAKPDMN-----IF----- 330 (511)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSS-CCCBEECTTCE-----EE-----
T ss_pred ccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCc-CCCcceeCCCE-----EE-----
Confidence 99999999999999999999998 78999999999999776654331111 11222 57888888887 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
|+|++|+++++|+.|||+|+|| +++.|||++++.+.+.|+...+
T Consensus 331 ---------------------------------i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~g 374 (511)
T 3e7w_A 331 ---------------------------------IMDEEGQPLPEGEKGEIVIAGP---SVSRGYLGEPELTEKAFFSHEG 374 (511)
T ss_dssp ---------------------------------EECTTSCBCCTTCCEEEEEEST---TSCCCBTTCHHHHHHHEEESSS
T ss_pred ---------------------------------EECCCCCCCCCCCceEEEEecC---ccChhhCCCcccchhhhcCCCC
Confidence 9999999999999999999999 9999999999999999876433
Q ss_pred C-eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCc
Q psy8076 554 G-YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632 (737)
Q Consensus 554 g-~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 632 (737)
+ ||+|||+|++ +||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++++++..++.++|+|++.+.
T Consensus 375 ~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~---- 449 (511)
T 3e7w_A 375 QWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEH---- 449 (511)
T ss_dssp SEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCC----
T ss_pred CEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccc----
Confidence 3 7999999999 699999999999999999999999999999999999999999999988888999999998775
Q ss_pred CCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchh
Q psy8076 633 MGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKT 712 (737)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi 712 (737)
.. .....+.++|+++++++||.|++|+.++++++||+|++||+
T Consensus 450 --------~~-----------------------------~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi 492 (511)
T 3e7w_A 450 --------EF-----------------------------EKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKI 492 (511)
T ss_dssp --------CC-----------------------------SSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCB
T ss_pred --------cc-----------------------------cchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCc
Confidence 11 22345678999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCC
Q psy8076 713 ARKSIVDMARNK 724 (737)
Q Consensus 713 ~R~~l~~~~~~~ 724 (737)
+|++|++++.++
T Consensus 493 ~R~~L~~~~~~~ 504 (511)
T 3e7w_A 493 DRKRIGEEVLVR 504 (511)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHhHHhhh
Confidence 999999998654
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=8.8e-78 Score=689.01 Aligned_cols=486 Identities=21% Similarity=0.297 Sum_probs=320.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
+++++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 ~l~~~l~~~a~~~-pd~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 76 CVHELFEAQAARA-PDAVALLHEA------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CHHHHHHHHHHHC-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC-CCCeEEECCC------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 5889999999998 9999999976 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|+++...... . ....+ .+...
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~----------------~-~~~~~-~~~~~------------- 197 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL----------------T-GTTTL-YVEDE------------- 197 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS----------------C-SSEEE-ECCC--------------
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc----------------c-CCcce-eeecc-------------
Confidence 99999999999999999999999999999987532210 0 11111 11000
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
. ..............+++++||+||||||| .||||+++|++++..... ...++++++|+++++
T Consensus 198 ~---~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~--~~~~~~~~~d~~l~~ 260 (570)
T 4gr5_A 198 A---ASDAPAGNLATGVGPEDVACVMFTSGSTG------------RPKGVMSPHRALTGTYLG--QDYAGFGPDEVFLQC 260 (570)
T ss_dssp ---------CCCCCCCCCTTSEEEEECCSSCCS------------SCCCEEEEHHHHHHHHSS--CCSSCCSTTCEEEEC
T ss_pred c---cccccccccCCCCCCCCeEEEEECCcCCC------------CCeEEEEecHHHHHHHHh--hhhcCCCCCCEEEEe
Confidence 0 00001112233467899999999999999 999999999886544332 345678899999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
+|++|+.+ .+.++.+|+.|+++++.+.. .+++..+++.|+++++|++.++|++++.|.+.... ++++||
T Consensus 261 ~p~~~~~~-~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------~~~~lr 329 (570)
T 4gr5_A 261 SPVSWDAF-GLELFGALLFGARCVLQSGQ---NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-------AFEGVR 329 (570)
T ss_dssp SCTTSSTH-HHHHHHHHTTTCEEEECSSS---SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-------GGTTCS
T ss_pred cCccHHHH-HHHHHHHHhcCCEEEEcCCc---cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-------hCCCce
Confidence 99999776 45689999999999998743 36899999999999999999999999999876432 478999
Q ss_pred EEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
.+++|||++++++.+++.+.+ +..++|.||+||+++..+............. .++|+|++|++ ++
T Consensus 330 ~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~-~~iG~p~~~~~-----v~-------- 395 (570)
T 4gr5_A 330 YAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTA-LPIGVPLAGKR-----AY-------- 395 (570)
T ss_dssp EEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSS-CCCBEECTTEE-----EE--------
T ss_pred EEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCc-cccceeeCCCE-----EE--------
Confidence 999999999999999988887 6899999999999877665443222222223 56888888877 77
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC-----
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK----- 551 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~----- 551 (737)
|+|++|++++.|+.|||+|+|| +++.|||++++.+.+.|..+
T Consensus 396 ------------------------------i~d~~~~~~~~G~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~~~~ 442 (570)
T 4gr5_A 396 ------------------------------VLDDDLKPAANGALGELYVAGA---GLAHGYVSRPALTAERFVADPFAGP 442 (570)
T ss_dssp ------------------------------EECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECTTCCS
T ss_pred ------------------------------EECCCCCCCCCCCcEEEEEeec---ccchhcCCCchhhhcccccCCCCCC
Confidence 9999999999999999999999 99999999999999887642
Q ss_pred -CCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 552 -FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 552 -~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
.+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|+....
T Consensus 443 ~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~-- 520 (570)
T 4gr5_A 443 GGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERA-- 520 (570)
T ss_dssp SCCEEEEEEEEEEECTTSCEEEEEC-------------------------------------------------------
T ss_pred CCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCC--
Confidence 24799999999999999999999999999999999999999999999999999999999988888999999987654
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
. .....++|+++|+++|+.|++|+.++++++||+|++|
T Consensus 521 ----------~--------------------------------~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~G 558 (570)
T 4gr5_A 521 ----------D--------------------------------APPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNG 558 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------C--------------------------------CCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCc
Confidence 0 1234678999999999999999999999999999999
Q ss_pred hhhHHHHHHH
Q psy8076 711 KTARKSIVDM 720 (737)
Q Consensus 711 Ki~R~~l~~~ 720 (737)
|++|++|++.
T Consensus 559 Ki~R~~L~~~ 568 (570)
T 4gr5_A 559 KLDRRALTGS 568 (570)
T ss_dssp ----------
T ss_pred CcchHhhhcc
Confidence 9999999875
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.7e-76 Score=672.95 Aligned_cols=509 Identities=22% Similarity=0.305 Sum_probs=411.3
Q ss_pred CCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHH
Q psy8076 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSM 151 (737)
Q Consensus 72 ~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 151 (737)
+...+|++.++|+++++ + ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~-p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-R-AGKTAYIDDT------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp ---CCCHHHHHHHHTGG-G-TTSEEEECSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred CccceeHHHHHHHhhhc-c-CCceEEEeCC------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 34566789999999998 7 9999999875 88999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCC-CeEEEEecccccccc
Q psy8076 152 LATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKP-DYCIIFQRRCVEEAE 230 (737)
Q Consensus 152 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~viv~~~~~~~~~~ 230 (737)
|||+++|++++|+++.++.+++.+++++++++++|+++.. ...+.......+ .. ..++++.....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~---- 156 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGAL---------VQNVTQALESAE-HDGCQLIVSQPRES---- 156 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGG---------HHHHHHHHHCC----CCEEEEECC-------
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhh---------hhHHHHHHhhcc-ccCceEEEeccccc----
Confidence 9999999999999999999999999999999999998752 233333333222 22 34444332100
Q ss_pred cCCCCcccHHHHHhhcC-CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCC
Q psy8076 231 LTPGYDILWDDALAQRL-SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG 309 (737)
Q Consensus 231 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~ 309 (737)
.......+.++..... ........+++++|++||||||| .||||+++|+++...........++++
T Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~sh~~l~~~~~~~~~~~~~~~ 223 (529)
T 2v7b_A 157 -EPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTG------------KPKGTVHTHANLYWTAELYAKPILGIA 223 (529)
T ss_dssp ----CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----------------CCCEEEEEHHHHHHHHHHTCCCCCCCC
T ss_pred -ccccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCC------------CCceEEEEhhHHHHHHHHHhhhccCCC
Confidence 0001124555554222 22233467899999999999999 999999999886344443344557889
Q ss_pred CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcccc
Q psy8076 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGA 389 (737)
Q Consensus 310 ~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~ 389 (737)
++|++++.+|++|++++...++.+|..|+++++.+. .+++..+++.|+++++|+++++|+++..+.......
T Consensus 224 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---- 295 (529)
T 2v7b_A 224 ENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE----RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLP---- 295 (529)
T ss_dssp TTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS----CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCC----
T ss_pred CCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC----CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccc----
Confidence 999999999999999976667889999999998752 478999999999999999999999999998754321
Q ss_pred CCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeee
Q psy8076 390 QYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVM 469 (737)
Q Consensus 390 ~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~ 469 (737)
.....+||.+++|||++++++.+++.+.++++++|.||+||++..++.... ..... +++|+|+++++ ++
T Consensus 296 ~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~----~~~~~-~~~G~p~~~~~-----~~- 364 (529)
T 2v7b_A 296 ARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRA----GAVEY-GTTGRPVPGYE-----IE- 364 (529)
T ss_dssp CGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCT----TCCCT-TSCCEECTTCE-----EE-
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeecccc----CCCcc-CCcccCCCCCE-----EE-
Confidence 111238999999999999999999999999999999999999765544321 12333 78899998888 77
Q ss_pred eccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhc
Q psy8076 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYF 549 (737)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~ 549 (737)
|+|++|+++|.|+.|||+|+|| +++.|||++++.+.+.|.
T Consensus 365 -------------------------------------i~d~~g~~~~~g~~GEl~v~g~---~~~~gY~~~~~~t~~~f~ 404 (529)
T 2v7b_A 365 -------------------------------------LRDEAGHAVPDGEVGDLYIKGP---SAAVMYWNNREKSRATFL 404 (529)
T ss_dssp -------------------------------------EECTTSCBCCTTSCEEEEEECT---TCCCCBTTCHHHHHHHEE
T ss_pred -------------------------------------EECCCCCCCCCCCccEEEEecC---CcccccCCChHHHHHhhh
Confidence 9999999999999999999999 999999999999988773
Q ss_pred cCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCC
Q psy8076 550 TKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIP 629 (737)
Q Consensus 550 ~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~ 629 (737)
+|||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++. ++..++.++|+|++.++
T Consensus 405 ---~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~- 479 (529)
T 2v7b_A 405 ---GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKRE- 479 (529)
T ss_dssp ---TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTT-
T ss_pred ---cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCC-
Confidence 7899999999999999999999999999999999999999999999999999999999 66677889999998765
Q ss_pred CCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCC
Q psy8076 630 LDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRS 709 (737)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~s 709 (737)
. ...+...++|+++++++|+.|++|+.++++++||+|++
T Consensus 480 -----------~------------------------------~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~ 518 (529)
T 2v7b_A 480 -----------F------------------------------APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTAT 518 (529)
T ss_dssp -----------C------------------------------CCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTT
T ss_pred -----------C------------------------------CcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCc
Confidence 1 11233567899999999999999999999999999999
Q ss_pred chhhHHHHHHH
Q psy8076 710 GKTARKSIVDM 720 (737)
Q Consensus 710 GKi~R~~l~~~ 720 (737)
||++|++|+++
T Consensus 519 GKi~r~~L~~~ 529 (529)
T 2v7b_A 519 GKIQRFKLREQ 529 (529)
T ss_dssp SCBCHHHHHC-
T ss_pred cchhHHhHhhC
Confidence 99999999863
No 19
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.4e-77 Score=681.05 Aligned_cols=507 Identities=21% Similarity=0.292 Sum_probs=384.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~l~~~l~~~a~~~-p~~~a~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 19 NLWDFLERAAALF-GRKEVVSRLH--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CTHHHHHHHHHHS-TTCEEEEECT--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhC-CCceEEEEec--CCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 3678999999988 9999999743 223589999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|+++. +...+......++ ..+.++++.... .....
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~ 158 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN---------LLPLVEAIRGELK-TVQHFVVMDEKA-------PEGYL 158 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGG---------GHHHHHHHGGGCS-SCCEEEESSSCC-------CTTCE
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChh---------HHHHHHHHHhhCC-CccEEEEecCCC-------Ccccc
Confidence 999999999999999999999999999999864 2333444433333 445555543320 01223
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH-HhhhhcCCCCcEEEE
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT-MSVIYNMGQDDVWWT 316 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~-~~~~~~~~~~d~~l~ 316 (737)
.+.+....... .....++++++|+||||||| .||||+++|++++...... ....++++++|++++
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~ 224 (541)
T 1v25_A 159 AYEEALGEEAD--PVRVPERAACGMAYTTGTTG------------LPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLP 224 (541)
T ss_dssp EHHHHCCSCCC--CCCCCTTSEEEEEEECSSSS------------SCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEE
T ss_pred cHHHHhhccCC--cccCCCCCcEEEEECCCCCC------------CCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEE
Confidence 45554433222 13456789999999999999 9999999998876554432 234567889999999
Q ss_pred ecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 317 ~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
.+|++|+.++. .++.+++.|+++++.+. .+++..+++.|+++++|+++++|+++..|.+.... ...++++|
T Consensus 225 ~~p~~h~~~~~-~~~~~l~~G~~~v~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l~~l 295 (541)
T 1v25_A 225 VVPMFHVNAWC-LPYAATLVGAKQVLPGP----RLDPASLVELFDGEGVTFTAGVPTVWLALADYLES----TGHRLKTL 295 (541)
T ss_dssp CSCTTSHHHHT-HHHHHHHHTCEEEECTT----CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHH----HTCCCSSC
T ss_pred eccchhhhHHH-HHHHHHhcCceEEeeCC----CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhc----cCCcchhc
Confidence 99999999864 47889999999999763 36899999999999999999999999999875432 23467899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCC-------CCCCCccCCCcCCCCCCcceeee
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDT-------VPPKYSTGLPFPGYDGKYVNIVM 469 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~-------~~~~~~~G~p~~g~~~~~~~~~~ 469 (737)
|.+++|||++++++.++| +.++++++|.||+||++..++.......... ... .++|+|+++++ ++
T Consensus 296 r~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~p~~~~~-----~~- 367 (541)
T 1v25_A 296 RRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK-AKTGLPIPLVR-----LR- 367 (541)
T ss_dssp CEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH-TSCBEECTTCE-----EE-
T ss_pred cEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcccccccc-CCCCCcCCCcE-----EE-
Confidence 999999999999999999 6689999999999999876655422100000 112 56677777766 66
Q ss_pred eccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCC--CcceEEEEecCCCCCcccccccChhhhHHh
Q psy8076 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEP--HELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547 (737)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~--g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~ 547 (737)
|+|++|++++. ++.|||+|+|| +++.|||++++.+.+.
T Consensus 368 -------------------------------------i~d~~g~~~~~~~~~~GEl~v~g~---~v~~GY~~~p~~t~~~ 407 (541)
T 1v25_A 368 -------------------------------------VADEEGRPVPKDGKALGEVQLKGP---WITGGYYGNEEATRSA 407 (541)
T ss_dssp -------------------------------------EECTTSCBCCSSSCCCEEEEEEST---TSBSSCBTCHHHHHTT
T ss_pred -------------------------------------EECCCCCCCCCCCCcceEEEEeCc---chhccccCChhhhhhh
Confidence 99999999985 36899999999 9999999999999887
Q ss_pred hccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeec
Q psy8076 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627 (737)
Q Consensus 548 ~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 627 (737)
|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++|+|+++.
T Consensus 408 f~~--~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~ 485 (541)
T 1v25_A 408 LTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG 485 (541)
T ss_dssp BCT--TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----
T ss_pred ccC--CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECC
Confidence 743 799999999999999999999999999999999999999999999999999999999999988999999998763
Q ss_pred CCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCC
Q psy8076 628 IPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPR 706 (737)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~ 706 (737)
. ....+++++++++ +|+.|++|+.++++++||+
T Consensus 486 ~----------------------------------------------~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~ 519 (541)
T 1v25_A 486 E----------------------------------------------KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPR 519 (541)
T ss_dssp -------------------------------------------------------------CCCTTTSCSBC--------
T ss_pred C----------------------------------------------CCCHHHHHHHHHhccCccccCCcEEEEeCCCCC
Confidence 2 1124568888888 8999999999999999999
Q ss_pred CCCchhhHHHHHHHHcC
Q psy8076 707 TRSGKTARKSIVDMARN 723 (737)
Q Consensus 707 t~sGKi~R~~l~~~~~~ 723 (737)
|++||++|++|++++.+
T Consensus 520 t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 520 TSAGKFLKRALREQYKN 536 (541)
T ss_dssp ------CCTTHHHHSTT
T ss_pred CCccCeeHHHHHHHHHH
Confidence 99999999999998765
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=6.4e-77 Score=679.76 Aligned_cols=485 Identities=18% Similarity=0.241 Sum_probs=402.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +++||+||+++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 40 ~l~~~l~~~a~~~-p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 40 TIHQLFEEQVSKR-PNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CHHHHHHHHHHHC-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHC-CCCeEEEeCC------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 4788999999998 9999999876 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|++.... ....... ....+..+... .+
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~-------------~~~~~~~-~~~~~~~~~~~-----------~~ 167 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV-------------HLIHNIQ-FNGQVEIFEED-----------TI 167 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH-------------HHHTTSC-CCSEEEECCCS-----------TT
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchh-------------hhhhhcc-ccCceeeecch-----------hh
Confidence 99999999999999999999999999999986421 1111111 11222222111 00
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
. .........+..+++++||+||||||| .||||+++|++++....+ +...++++++|++++.
T Consensus 168 ~-----~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~ 229 (563)
T 1amu_A 168 K-----IREGTNLHVPSKSTDLAYVIYTSGTTG------------NPKGTMLEHKGISNLKVF-FENSLNVTEKDRIGQF 229 (563)
T ss_dssp T-----TSCCSCCCCCCCTTSEEEEEEEC-----------------CEEEEEESHHHHHHHHH-HHHTSCCCTTCEEEEC
T ss_pred c-----cccCccCCCCCCCCCeEEEEECCCCCC------------CCcEEEEehHHHHHHHHH-HHHhcCCCCCCEEEEe
Confidence 0 000111123456789999999999999 999999999886655443 5566889999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
+|++|+.++ +.++.+|+.|+++++.+... ..++..+++.++++++|++.++|+++..|.. ..+++||
T Consensus 230 ~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------~~~~~lr 296 (563)
T 1amu_A 230 ASISFDASV-WEMFMALLTGASLYIILKDT--INDFVKFEQYINQKEITVITLPPTYVVHLDP----------ERILSIQ 296 (563)
T ss_dssp SCTTSTHHH-HHHHHHHTTTCEEEECCHHH--HTCHHHHHHHHHHTTCCEEEECHHHHTTSCT----------TTCCSCS
T ss_pred CCccHHHHH-HHHHHHHHCCCEEEEcChHh--hcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh----------ccccccc
Confidence 999999985 46889999999999986422 2589999999999999999999999887632 1467899
Q ss_pred EEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~ 477 (737)
.+++||+++++++.++|.+. ..++|.||+||++..++...... ...... .++|+|+++++ ++
T Consensus 297 ~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~-~~vG~p~~~~~-----v~--------- 358 (563)
T 1amu_A 297 TLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATK-ETIGHS-VPIGAPIQNTQ-----IY--------- 358 (563)
T ss_dssp EEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCS-SCCCSS-CCCBEECTTEE-----EE---------
T ss_pred EEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeeccc-ccCCCC-CcccceeCCCE-----EE---------
Confidence 99999999999999999874 78999999999987665543211 111223 67888888877 77
Q ss_pred ccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC----CC
Q psy8076 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK----FP 553 (737)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~----~~ 553 (737)
|+|++|++++.|+.|||+|+|| +++.|||++++.+.+.|... .+
T Consensus 359 -----------------------------i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~pe~t~~~f~~~~~~~g~ 406 (563)
T 1amu_A 359 -----------------------------IVDENLQLKSVGEAGELCIGGE---GLARGYWKRPELTSQKFVDNPFVPGE 406 (563)
T ss_dssp -----------------------------EECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECSSSTTS
T ss_pred -----------------------------EECCCcCCCCCCCcEEEEEech---hhChhhCCCchhhhhhcccCCCCCCC
Confidence 9999999999999999999999 99999999999998887542 34
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|+....
T Consensus 407 ~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~----- 481 (563)
T 1amu_A 407 KLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----- 481 (563)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC-----
T ss_pred EEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC-----
Confidence 699999999999999999999999999999999999999999999999999999999998888999999987643
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. ..++|+++++++||.|++|+.++++++||+|++||++
T Consensus 482 -------~-----------------------------------~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~ 519 (563)
T 1amu_A 482 -------I-----------------------------------PLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKID 519 (563)
T ss_dssp -------C-----------------------------------CHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBC
T ss_pred -------C-----------------------------------CHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChh
Confidence 1 1467999999999999999999999999999999999
Q ss_pred HHHHHHHHc
Q psy8076 714 RKSIVDMAR 722 (737)
Q Consensus 714 R~~l~~~~~ 722 (737)
|++|++...
T Consensus 520 r~~L~~~~~ 528 (563)
T 1amu_A 520 RKQLPEPDL 528 (563)
T ss_dssp GGGSCCCCC
T ss_pred HHhcCCccc
Confidence 999988654
No 21
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.1e-76 Score=672.61 Aligned_cols=504 Identities=18% Similarity=0.258 Sum_probs=420.8
Q ss_pred HHHH-HHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYN-AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~-~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
++.+ +|.++++++ |++|+++.+ ..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 ~l~~~~l~~~~~~~--~~~A~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 26 GTQLRKYMERYAKL--GAIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHHHH--TCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cHHHHHHHhhhccc--CCceEEEcC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 4566 777777664 999999742 137899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+|++++|++|.++.+++.+++++++++++|+++.. ...+......++ ....++++..... ....
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~ 163 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKG---------LDKVITVQKTVT-TIKTIVILDSKVD------YRGY 163 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTT---------HHHHHHHHHHST-TCCEEEETTCSSC------BTTB
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHH---------HHHHHHHhcCCC-CCCEEEEeCCccc------cccc
Confidence 99999999999999999999999999999998753 233444444443 2445554432100 0012
Q ss_pred ccHHHHHhhcCC--CCCcccc-----C-CCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhh--h
Q psy8076 237 ILWDDALAQRLS--HRCVPVE-----A-NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI--Y 306 (737)
Q Consensus 237 ~~~~~~~~~~~~--~~~~~~~-----~-~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~--~ 306 (737)
..+.++...... ....... + ++++||+||||||| .||||+++|++++....+..... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~sh~~~~~~~~~~~~~~~~~ 231 (548)
T 2d1s_A 164 QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTG------------LPKGVQLTHENIVTRFSHARDPIYGN 231 (548)
T ss_dssp CBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSS------------SCCCEEEEHHHHHHHHHHHTCTTTSC
T ss_pred ccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCC------------CCCEEEecHHHHHHHHHHhhchhhcc
Confidence 345555544321 1111222 4 89999999999999 99999999998776655533222 6
Q ss_pred cCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc
Q psy8076 307 NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386 (737)
Q Consensus 307 ~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~ 386 (737)
+++++|++++.+|++|+.++...++.++ .|+++++.+ .+++..+++.|+++++|+++++|++++.|.+....
T Consensus 232 ~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-- 303 (548)
T 2d1s_A 232 QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-----KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELL-- 303 (548)
T ss_dssp CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-----CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCG--
T ss_pred CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-----CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccc--
Confidence 7889999999999999999765567777 999999986 36899999999999999999999999999886542
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcc
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~ 465 (737)
...++++||.+++|||++++++.+++.+.+ +..++|.||+||++..++... ....+. +++|+|+++++
T Consensus 304 --~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~----~~~~~~-~~~G~~~~~~~---- 372 (548)
T 2d1s_A 304 --NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP----EGDDKP-GASGKVVPLFK---- 372 (548)
T ss_dssp --GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC----TTCCCT-TCCBEECTTCE----
T ss_pred --ccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecC----cccCCC-CCCCccCCCce----
Confidence 345789999999999999999999999998 578999999999987665522 122334 78899998888
Q ss_pred eeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhh
Q psy8076 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRF 544 (737)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~ 544 (737)
++ |+| ++|+++++|+.|||+|+|| +++.|||++++.+
T Consensus 373 -~~--------------------------------------i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t 410 (548)
T 2d1s_A 373 -AK--------------------------------------VIDLDTKKSLGPNRRGEVCVKGP---MLMKGYVNNPEAT 410 (548)
T ss_dssp -EE--------------------------------------EECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHH
T ss_pred -EE--------------------------------------EEeCCcCccCCCCCCeEEEECCH---HHhhhhcCChHHh
Confidence 77 999 7899999999999999999 9999999999999
Q ss_pred HHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEE
Q psy8076 545 MKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYI 624 (737)
Q Consensus 545 ~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~ 624 (737)
.+.|. .+|||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+
T Consensus 411 ~~~f~--~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv 488 (548)
T 2d1s_A 411 KELID--EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVV 488 (548)
T ss_dssp HHHBC--TTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhccc--CCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEE
Confidence 88763 3789999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred eecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeee-eEEEcCC
Q psy8076 625 KKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFK-LSTSVTG 703 (737)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~v~~ 703 (737)
++++ .. ...++|+++++++|+.|++|+ .++++++
T Consensus 489 ~~~~------------~~---------------------------------~~~~~l~~~~~~~l~~~~~p~~~i~~v~~ 523 (548)
T 2d1s_A 489 LESG------------KN---------------------------------MTEKEVMDYVASQVSNAKRLRGGVRFVDE 523 (548)
T ss_dssp ECTT------------CC---------------------------------CCHHHHHHHHHTTSCGGGSCTTCEEECSS
T ss_pred EcCC------------CC---------------------------------CCHHHHHHHHHHhccccccccccEEEccC
Confidence 8764 10 125679999999999999999 9999999
Q ss_pred CCCCCCchhhHHHHHHHHcC
Q psy8076 704 LPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 704 lP~t~sGKi~R~~l~~~~~~ 723 (737)
||+|++||++|++|++++.+
T Consensus 524 lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 524 VPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp CCBCTTSCBCHHHHHHHHHS
T ss_pred CCCCCcchhHHHHHHHHHhh
Confidence 99999999999999999865
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.9e-76 Score=668.93 Aligned_cols=505 Identities=21% Similarity=0.237 Sum_probs=408.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.++|+++++++ ||++|+.+.+ +++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 5 ~l~~~l~~~a~~~-p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 5 DMIDSIEQFAQTQ-ADFPVYDCLG------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CHHHHHHHHHHHS-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-CCCcceecCC------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 4678999999998 9999999887 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++.+++++++++++|+++......... .++.+.
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------~~~~~~--------------- 124 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------SLVSLS--------------- 124 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------EEEEHH---------------
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccC------------------cccchh---------------
Confidence 99999999999999999999999999999987643211100 000000
Q ss_pred cHHHHH-hhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhh-hhcCCCCcEEE
Q psy8076 238 LWDDAL-AQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSV-IYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~-~~~~~~~d~~l 315 (737)
.+.... ............++++++|+||||||| .||||+++|++++....+.... .+++..+++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l 192 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTG------------QPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQML 192 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---------------CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEE
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCC------------CCCEEEEehHHHHHHHHHHhhccccCCCCCCeEE
Confidence 011111 111112334567899999999999999 9999999999877665543222 36788999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+..|++|+.+. ..++.++..|+++++.+... ..++..+++.++++++|++.++|+++..+...... ...++++
T Consensus 193 ~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 265 (521)
T 3l8c_A 193 AQPPYSFDLSV-MYWAPTLALGGTLFALPKEL--VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF----CQAKMPA 265 (521)
T ss_dssp CCSCTTSGGGH-HHHHHHHHTTCEEEECCGGG--TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC----STTTCTT
T ss_pred ecCCccHHHHH-HHHHHHHhcCCEEEEcCHHH--hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc----ccccCcc
Confidence 99999999885 45788999999999987532 25899999999999999999999999998876543 3457889
Q ss_pred ccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCC-CCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQH-DTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
||.+++||+++++++.+++.+.+ ++++++.||+||+++.++........ ..... .++|+|+++++ ++
T Consensus 266 lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~vG~p~~~~~-----~~----- 334 (521)
T 3l8c_A 266 LTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTR-LPIGYPKPDSP-----TY----- 334 (521)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSS-CEEEEECTTSC-----EE-----
T ss_pred ceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCc-cccccccCCCE-----EE-----
Confidence 99999999999999999999988 78999999999999776654321110 11222 67889998888 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhcc-CC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT-KF 552 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~-~~ 552 (737)
|+|++|++++.|+.|||+|+|| +++.|||++++.+.+.|+. +.
T Consensus 335 ---------------------------------i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~ 378 (521)
T 3l8c_A 335 ---------------------------------IIDEDGKELSSGEQGEIIVTGP---AVSKGYLNNPEKTAEAFFTFKG 378 (521)
T ss_dssp ---------------------------------EECTTSCBCCTTCCEEEEEEST---TSCSCBTTCHHHHHHHEEEETT
T ss_pred ---------------------------------EECCCcCCCCCCCceEEEeccc---ccChhhcCCchHhhccCcCCCC
Confidence 9999999999999999999999 9999999999999998764 34
Q ss_pred CCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCC-CCcceEEEEEeecCCCC
Q psy8076 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT-KGEIPFCLYIKKRIPLD 631 (737)
Q Consensus 553 ~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~-~~~~~~a~v~~~~~~~~ 631 (737)
+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++. .++.++|+|+++++...
T Consensus 379 ~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~ 458 (521)
T 3l8c_A 379 QPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKE 458 (521)
T ss_dssp EEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGG
T ss_pred ceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccc
Confidence 57999999999999999999999999999999999999999999999999999999987644 46889999999876110
Q ss_pred cCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCch
Q psy8076 632 KMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGK 711 (737)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGK 711 (737)
. . .....+.++|+++++++|+.|++|+.++++++||+|++||
T Consensus 459 ~--------~------------------------------~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK 500 (521)
T 3l8c_A 459 R--------F------------------------------DRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGK 500 (521)
T ss_dssp G--------C------------------------------SSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSS
T ss_pred c--------c------------------------------ccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcC
Confidence 0 0 1123567899999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCCCC
Q psy8076 712 TARKSIVDMARNKPL 726 (737)
Q Consensus 712 i~R~~l~~~~~~~~~ 726 (737)
+||++|++.+.+++-
T Consensus 501 idr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 501 IDIKTLINEVNNREG 515 (521)
T ss_dssp BCHHHHHHHTC----
T ss_pred ccHHHHhhhhhcCCc
Confidence 999999999987643
No 23
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.7e-77 Score=682.30 Aligned_cols=511 Identities=18% Similarity=0.235 Sum_probs=327.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|.++++++ |+++|++.... ....+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 tl~~~l~~~a~~~-p~~~a~~a~~~-~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 21 TAGEQLHKAMKRY-ALVPGTIAFTD-AHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CHHHHHHHHHHHH-HTSTTCEEEEE-TTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC-CCCceEEEeee-cCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 4788999999998 99999762110 112379999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|+++. ....+.......+ ....++++..... .....
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~ 162 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKK---------GLQKILNVQKKLP-IIQKIIIMDSKTD------YQGFQ 162 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGG---------GHHHHHHHHHHCT-TCCEEEETTCSSC------BTTBC
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHH---------HHHHHHHHHhhCC-CcceEEEEcCCcc------ccCcc
Confidence 999999999999999999999999999999875 3344555555555 5666666543210 11233
Q ss_pred cHHHHHhhcCC-------C-CCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhh--hc
Q psy8076 238 LWDDALAQRLS-------H-RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI--YN 307 (737)
Q Consensus 238 ~~~~~~~~~~~-------~-~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~--~~ 307 (737)
.+.++...... . +.....+++++||+||||||| .||||+++|++++....+..... ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~~~~~~~~~~~~~~~~~ 230 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTG------------LPKGVALPHRTACVRFSHARDPIFGNQ 230 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----------------CCCEEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCccc------------CcchhhhhHHHHHHHHHHhhhhhcccc
Confidence 45555443221 0 111224578999999999999 99999999998776665543332 46
Q ss_pred CCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 308 ~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
+.++|++++.+|++|++++ +.++.+|..|+++++.+. +++..+++.|+++++|+++++|+++..|.+....
T Consensus 231 ~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--- 301 (550)
T 3rix_A 231 IIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR-----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI--- 301 (550)
T ss_dssp CCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSS-----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGG---
T ss_pred CCCCcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCC-----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccc---
Confidence 7899999999999999996 457889999999999863 7899999999999999999999999999887543
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCc-ccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcce
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVT-MLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~-i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~ 466 (737)
...++++||.+++|||++++++.+++.+.++.. ++|.||+||+++.++.... ...++ +++|+|+++++
T Consensus 302 -~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~----~~~~~-~~vG~~~~~~~----- 370 (550)
T 3rix_A 302 -DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE----GDDKP-GAVGKVVPFFE----- 370 (550)
T ss_dssp -GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT----TCCCT-TEEEEECTTCE-----
T ss_pred -cccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC----CCCCC-CCcccccCCcE-----
Confidence 455789999999999999999999999999865 8999999999977665432 23344 78999999888
Q ss_pred eeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhH
Q psy8076 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~ 545 (737)
++ |+| ++|++++.|+.|||+|+|| +++.|||++++.+.
T Consensus 371 ~~--------------------------------------i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~ 409 (550)
T 3rix_A 371 AK--------------------------------------VVDLDTGKTLGVNQRGELCVRGP---MIMSGYVNNPEATN 409 (550)
T ss_dssp EE--------------------------------------EECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHH
T ss_pred EE--------------------------------------EEeCCCCcCCCCCCCeEEEEeCC---CcchhhcCChhhhh
Confidence 77 999 5799999999999999999 99999999999998
Q ss_pred HhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEe
Q psy8076 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIK 625 (737)
Q Consensus 546 ~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~ 625 (737)
+.|. .+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++|++
T Consensus 410 ~~~~--~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~ 487 (550)
T 3rix_A 410 ALID--KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487 (550)
T ss_dssp HHBC--TTSCEEEEEEEEECTTCCEEEC----------------------------------------------------
T ss_pred hhcC--CCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEe
Confidence 7663 37999999999999999999999999999999999999999999999999999999999999899999999998
Q ss_pred ecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceee-eeEEEcCCC
Q psy8076 626 KRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAF-KLSTSVTGL 704 (737)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~~v~~l 704 (737)
.++ . ....++|+++++++++.++.| ..++++++|
T Consensus 488 ~~~------------~---------------------------------~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~l 522 (550)
T 3rix_A 488 EHG------------K---------------------------------TMTEKEIVDYVASQVTTAKKLRGGVVFVDEV 522 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCC------------C---------------------------------CCCHHHHHHHHHHhcccccccCCceEEEeec
Confidence 765 1 123567999999999988654 579999999
Q ss_pred CCCCCchhhHHHHHHHHcCCCC
Q psy8076 705 PRTRSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 705 P~t~sGKi~R~~l~~~~~~~~~ 726 (737)
|+|++||+||++|++++.+..-
T Consensus 523 P~t~~GKi~r~~L~~~~~~~~~ 544 (550)
T 3rix_A 523 PKGLTGKLDARKIREILIKAKK 544 (550)
T ss_dssp ----------------------
T ss_pred CCCCCcceeHHHHHHHHHhhcc
Confidence 9999999999999999977543
No 24
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=7.3e-77 Score=672.73 Aligned_cols=493 Identities=22% Similarity=0.251 Sum_probs=319.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 7 tl~~~l~~~a~~~-pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 7 TLADVYRRNAALF-PDRTAFMVDG------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp CHHHHHHHHHHHS-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC-CCceEEEECC------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 4789999999998 9999999976 99999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|++... ...+......++ ....++.+... ..
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~-----------~~ 138 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDY---------RDIVAGVLPSLG-GVKKAYAIGDG-----------SG 138 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTT---------HHHHHHHGGGCS-SCCEEEESSCC-----------CS
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcch---------hhhHHhhhcccC-CceEEEEcCCC-----------Cc
Confidence 9999999999999999999999999999998753 233233333333 44555554331 11
Q ss_pred cHHHHHh--hcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALA--QRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
.+.+... ...........+++++||+||||||| .||||+++|++++....+ +...++++++|+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l 205 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGG------------RPRGALISQGNLLIAQSS-LVDAWRLTEADVNL 205 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--C------------CEEEEEEEHHHHHHHHHH-HHHHTTCCTTCEEE
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCC------------CCcEEEEehHHHHHHHHH-HHHhhCCCCCcEEE
Confidence 1111111 11112334567899999999999999 999999999887666554 55668999999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|++++.. ++.++..|++.++.. .+++..+++.|+++++|++.++|+++..|.+... ..++++
T Consensus 206 ~~~p~~~~~g~~~-~~~~~~~~g~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------~~~l~~ 273 (509)
T 3ivr_A 206 GMLPLFHVTGLGL-MLTLQQAGGASVIAA-----KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA------PAQLAS 273 (509)
T ss_dssp ECSCTTSHHHHHH-HHHHHHHTCEEEECS-----SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC------GGGGTT
T ss_pred EeCCCcchhHHHH-HHHHHHhCCcEEEec-----ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc------ccchhh
Confidence 9999999999765 444445555555544 2689999999999999999999999999988752 235789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeecccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~ 474 (737)
||.++.+|++ +..+++.+.+ ++.++|.||+||+++.++.... ...+ .++|+|+++++ ++
T Consensus 274 lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-----~~~~-~~~G~p~~~~~-----~~------ 333 (509)
T 3ivr_A 274 LRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPY-----RDRP-KSAGRPLFWRT-----VA------ 333 (509)
T ss_dssp CCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEG-----GGST-TSCCEECTTCE-----EE------
T ss_pred hheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcc-----ccCC-CcccccCCCcE-----EE------
Confidence 9999999987 8888888888 8999999999999977665432 1122 45889998888 77
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g 554 (737)
|+|++|+++++|+.|||+|+|| +++.|||++++.+.+.|. +|
T Consensus 334 --------------------------------i~d~~~~~~~~g~~GEl~v~g~---~~~~gY~~~~~~t~~~f~---~g 375 (509)
T 3ivr_A 334 --------------------------------VVDAEDRPLPPGEVGEIVLRGP---TVFKGYWNNAAATQHAFR---NG 375 (509)
T ss_dssp --------------------------------EECTTSCBCCTTCCEEEEEEST---TSCCEETTCHHHHHHHTG---GG
T ss_pred --------------------------------EECCCCCCCCCCCceEEEEecC---CccccccCCHHHhHHHhh---cC
Confidence 9999999999999999999999 999999999999988873 78
Q ss_pred eeecCceEEEecCceEEEEeec--CCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCc
Q psy8076 555 YYDTMDAGYYDENGYIYVTARD--DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~--dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 632 (737)
||+|||+|++|+||+++|+||. ||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++|++.++
T Consensus 376 ~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~---- 451 (509)
T 3ivr_A 376 WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG---- 451 (509)
T ss_dssp SEEEEEEEEECTTSCEEEEEEC----------------------------------------------------------
T ss_pred CcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC----
Confidence 9999999999999999999999 9999999999999999999999999999999999999889999999998765
Q ss_pred CCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchh
Q psy8076 633 MGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKT 712 (737)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi 712 (737)
. ....++|+++++++|+.|++|+.++++++||+|++||+
T Consensus 452 --------~---------------------------------~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 490 (509)
T 3ivr_A 452 --------E---------------------------------SIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAI 490 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------C---------------------------------CCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCc
Confidence 1 12356899999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCCC
Q psy8076 713 ARKSIVDMARNKPL 726 (737)
Q Consensus 713 ~R~~l~~~~~~~~~ 726 (737)
||++|++++.+..-
T Consensus 491 dr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 491 DRAAVKTAHGQEGH 504 (509)
T ss_dssp --------------
T ss_pred cHHHHHHHHhhccc
Confidence 99999999887543
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.4e-76 Score=718.07 Aligned_cols=565 Identities=19% Similarity=0.240 Sum_probs=338.3
Q ss_pred eeecccccccccccCChh-HHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHHHhhhh
Q psy8076 9 SLDFSGNKINECTSNQND-KYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHV 87 (737)
Q Consensus 9 ~~~y~~~~~~~~~~~~~~-~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~ 87 (737)
+-+|++++.++++++++. ++..+++.....+..... ...|.... +. ..++. ..+++++|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------~~-~~~p~--~~tl~~~l~~~a 71 (979)
T 3tsy_A 8 HHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNS----DVIFRSKL---------PD-IYIPN--HLSLHDYIFQNI 71 (979)
T ss_dssp -----------------------------------------CCCBCCSS---------CC-CCCCT--TSCHHHHHTTTG
T ss_pred cccccCcccCcchhhhhhhHHHHHHHhhhhcccCCCC----CceeecCC---------CC-CCCCC--CCCHHHHHHHHH
Confidence 347999999999999965 677777665544443111 11221111 11 11111 125789999999
Q ss_pred hccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC
Q psy8076 88 ERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 88 ~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~ 167 (737)
+++ ||++|+++.. ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||++|.
T Consensus 72 ~~~-pd~~Al~~~~----~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~ 146 (979)
T 3tsy_A 72 SEF-ATKPCLINGP----TGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPF 146 (979)
T ss_dssp GGT-TTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTT
T ss_pred HhC-CCCeEEEECC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCC
Confidence 998 9999999863 12789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcC
Q psy8076 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL 247 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
++.+++.+++++++++++|++...... +....... ...++.++.. ...........+.++.....
T Consensus 147 ~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 211 (979)
T 3tsy_A 147 FTPAEIAKQAKASNTKLIITEARYVDK---------IKPLQNDD---GVVIVCIDDN---ESVPIPEGCLRFTELTQSTT 211 (979)
T ss_dssp SCHHHHHHHHHHHTEEEEEECSTTTTT---------SHHHHHTS---CCEEEECCCC---TTSCCCTTEEEGGGTSSCCS
T ss_pred CCHHHHHHHHHHcCCeEEEEChHHHHH---------HHHHhhcC---CceEEEeCCc---ccccCCcccccHHHHhhccc
Confidence 999999999999999999999865432 22222211 1223333221 00011112233333332211
Q ss_pred ----CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh---hhhcCCCCcEEEEeccc
Q psy8076 248 ----SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS---VIYNMGQDDVWWTASDM 320 (737)
Q Consensus 248 ----~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~---~~~~~~~~d~~l~~~~~ 320 (737)
........+++++||+||||||| .||||+++|++++........ ..+++.++|++++.+|+
T Consensus 212 ~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 279 (979)
T 3tsy_A 212 EASEVIDSVEISPDDVVALPYSSGTTG------------LPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPM 279 (979)
T ss_dssp GGGGGSCCSCCCTTSEEECCBCCCSSS------------SCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCS
T ss_pred cccccCCcCCCCccceEEEEeCCCCCC------------CCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECch
Confidence 12233467899999999999999 999999999997776655332 24567899999999999
Q ss_pred ccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEE
Q psy8076 321 GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLF 400 (737)
Q Consensus 321 ~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~ 400 (737)
+|++++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|.+.... ...++++||.++
T Consensus 280 ~h~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l~~lr~~~ 350 (979)
T 3tsy_A 280 FHIYALNSIMLCGLRVGAAILIMPK-----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET----EKYDLSSIRVVK 350 (979)
T ss_dssp SSHHHHHHTHHHHHHHTCEEEECSS-----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG----GTSCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcCcEEEEeCC-----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc----cCCCccceEEEE
Confidence 9999987778899999999999863 6899999999999999999999999999887543 456789999999
Q ss_pred eecCCCCHHHHHHHHHhc-CCcccccccccccccccccccc-cCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccc
Q psy8076 401 VAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCL-GYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAH 478 (737)
Q Consensus 401 ~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~ 478 (737)
+|||++++++.+++.+.+ +++++|.||+||+++.++.... .......+. +++|+|+++++ ++
T Consensus 351 ~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~G~p~~~~~-----~~---------- 414 (979)
T 3tsy_A 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKS-GACGTVVRNAE-----MK---------- 414 (979)
T ss_dssp ESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCT-TCCCEECSSCE-----EE----------
T ss_pred EcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCC-CCcCcccCCcE-----EE----------
Confidence 999999999999999998 7899999999999976554321 111223334 67888888877 77
Q ss_pred cccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeee
Q psy8076 479 CVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557 (737)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~ 557 (737)
|+| ++|+++++|+.|||+|+|| +++.|||++++.+.+.|. .+|||+
T Consensus 415 ----------------------------i~d~~~~~~~~~g~~GEl~i~g~---~v~~GY~~~p~~t~~~f~--~~g~~~ 461 (979)
T 3tsy_A 415 ----------------------------IVDPDTGDSLSRNQPGEICIRGH---QIMKGYLNNPAATAETID--KDGWLH 461 (979)
T ss_dssp ----------------------------EECTTSCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHBC--TTSCEE
T ss_pred ----------------------------EEeCCCCCCCCCCCccEEEEECC---CccccccCChhhhhhhcc--CCCcEE
Confidence 999 5699999999999999999 999999999999988863 378999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|++++++..++.+++||+..++
T Consensus 462 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~--------- 532 (979)
T 3tsy_A 462 TGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD--------- 532 (979)
T ss_dssp EEEEEEECTTSCEEEEEESCC-----------------------------------------------------------
T ss_pred cCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC---------
Confidence 99999999999999999999999999999999999999999999999999999998889999999987654
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
. ....++|+++++++|+.|++|+.++++++||+|+|||++|++|
T Consensus 533 ---~---------------------------------~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L 576 (979)
T 3tsy_A 533 ---S---------------------------------ELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDL 576 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---C---------------------------------CCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHH
Confidence 1 1235689999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q psy8076 718 VDMARNK 724 (737)
Q Consensus 718 ~~~~~~~ 724 (737)
++++.++
T Consensus 577 ~~~~~~~ 583 (979)
T 3tsy_A 577 RAKLANG 583 (979)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 9998764
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.5e-75 Score=657.29 Aligned_cols=479 Identities=21% Similarity=0.309 Sum_probs=383.5
Q ss_pred hhHHHHHHhhhhhccCCC-ceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 76 INACYNAIDRHVERGMAK-KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 76 ~n~~~~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
+.++.++|+++++++ |+ ++|+++.+ +++||+||.++++++|+.|. .|++|+++++|++++++++|||
T Consensus 21 ~~tl~~~l~~~a~~~-p~d~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~ 88 (505)
T 3nyq_A 21 MSSLFPALSPAPTGA-PADRPALRFGE------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAA 88 (505)
T ss_dssp ---CCTTTSSCCCSG-GGGSEEEEETT------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhC-CCCCeEEEECC------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHH
Confidence 345677888888887 65 99999986 99999999999999998774 3889999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC
Q psy8076 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 155 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~ 234 (737)
+++|++++|++|.++.+++.+++++++++++|++...... . ... .... +.+...
T Consensus 89 ~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-------~-------~~~-~~~~-~~~~~~---------- 142 (505)
T 3nyq_A 89 LLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-------P-------ALG-ALER-VDVDVR---------- 142 (505)
T ss_dssp HHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-------G-------GGT-TSEE-EECCTT----------
T ss_pred HHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-------h-------hhc-cccc-cccccc----------
Confidence 9999999999999999999999999999999998642110 0 000 1111 111000
Q ss_pred CcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEE
Q psy8076 235 YDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314 (737)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~ 314 (737)
...........+++++||+||||||| .||||+++|++++....+ +...++++++|++
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~ 199 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTG------------PPKGAVIPRRALATTLDA-LADAWQWTGEDVL 199 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSS------------SCEEEEEEHHHHHHHHHH-HHHHHTCCTTCEE
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcC------------CCCeEEEeHHHHHHHHHH-HHHHhCCCCCcEE
Confidence 00111223457789999999999999 999999999886666554 5566899999999
Q ss_pred EEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCC
Q psy8076 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTD 394 (737)
Q Consensus 315 l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~ 394 (737)
++.+|++|..|+.+.++.+|..|+++++.+ .+++..+++.+ ++++|+++++|+++..|.+...... .....++
T Consensus 200 l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-----~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~ 272 (505)
T 3nyq_A 200 VQGLPLFHVHGLVLGILGPLRRGGSVRHLG-----RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP-ELAKALA 272 (505)
T ss_dssp EECCCTTSHHHHTTTTHHHHHHTCEEEECS-----SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH-HHHHHHH
T ss_pred EEeccHHHHHHHHHHHHHHHhcCCEEEECC-----CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc-hhhcccc
Confidence 999999999998888999999999999986 37899999999 8999999999999999987432211 0123567
Q ss_pred CccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeecccc
Q psy8076 395 SLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 395 ~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~ 474 (737)
++|.+++||+++++++.+++.+.++.+++|.||+||+++.++... .....+ +++|+|++|++ ++
T Consensus 273 ~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~----~~~~~~-~~vG~p~~~~~-----~~------ 336 (505)
T 3nyq_A 273 GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRA----DGEPRA-GTVGVPLPGVE-----LR------ 336 (505)
T ss_dssp HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCT----TSCCCT-TCCCEECTTCE-----EE------
T ss_pred cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCC----CCCCCC-CCcccCCCCCE-----EE------
Confidence 899999999999999999999999999999999999986655432 223334 78899999888 77
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCC---CcceEEEEecCCCCCcccccccChhhhHHhhccC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEP---HELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK 551 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~---g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~ 551 (737)
|+|++|++++. |+.|||+|+|| +++.|||++++.+.+.|..
T Consensus 337 --------------------------------i~d~~g~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~- 380 (505)
T 3nyq_A 337 --------------------------------LVEEDGTPIAALDGESVGEIQVRGP---NLFTEYLNRPDATAAAFTE- 380 (505)
T ss_dssp --------------------------------EC-----CCCCCCSCCCEEEEEEST---TSCCEETTCHHHHHHTBCT-
T ss_pred --------------------------------EECCCCCCcccCCCCceEEEEEecC---chhhhhCCChhHhhhhhcC-
Confidence 99999999886 89999999999 9999999999999988744
Q ss_pred CCCeeecCceEEEecCceEEEEeec-CCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 552 FPGYYDTMDAGYYDENGYIYVTARD-DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 552 ~~g~~~TGDl~~~~~dG~l~i~GR~-dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
+|||+|||+|++|+||+++|+||+ ||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|++.+.
T Consensus 381 -~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~-- 457 (505)
T 3nyq_A 381 -DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP-- 457 (505)
T ss_dssp -TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST--
T ss_pred -CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC--
Confidence 789999999999999999999997 6999999999999999999999999999999999999899999999998763
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
. .....++|+++++++||.||+|+.++++++||+|+||
T Consensus 458 ----------~--------------------------------~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G 495 (505)
T 3nyq_A 458 ----------A--------------------------------APPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMG 495 (505)
T ss_dssp ----------T--------------------------------SCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC----
T ss_pred ----------C--------------------------------CCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCc
Confidence 0 0113568999999999999999999999999999999
Q ss_pred hhhHHHHHH
Q psy8076 711 KTARKSIVD 719 (737)
Q Consensus 711 Ki~R~~l~~ 719 (737)
|+||++|++
T Consensus 496 Ki~r~~L~~ 504 (505)
T 3nyq_A 496 KIMKRALNR 504 (505)
T ss_dssp ---------
T ss_pred CeeHHhhcc
Confidence 999999986
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.1e-74 Score=646.66 Aligned_cols=494 Identities=18% Similarity=0.240 Sum_probs=381.7
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++ +||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~~~-pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 3 LDFWLYKQAQQN-GHHIAITDGQ------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCCHHHHHHHHH-TTSEEEECSS------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc-CCceEEEeCC------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 356788999998 9999999876 8999999999999999999987 89999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccc-cccccCCCCcc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV-EEAELTPGYDI 237 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~-~~~~~~~~~~~ 237 (737)
++++|+++.++.+++.+++++++++++|++...............+. .+........ ...........
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 141 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIE-----------FAGRDITTNGLLDNTMGIQYDT 141 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccce-----------eeeeeccccccccccccccccc
Confidence 99999999999999999999999999999876544321111000000 0000000000 00000000000
Q ss_pred cHHHHHhhcC--CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALAQRL--SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
.......... ........+++++||+||||||| .||||+++|++++..... +...++++++|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~th~~~~~~~~~-~~~~~~~~~~d~~l 208 (501)
T 3ipl_A 142 SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTG------------PQKAVPQTFRNHYASAIG-CKESLGFDRDTNWL 208 (501)
T ss_dssp --------CCHHHHTCCCCCTTSEEEEEECCTTTS------------CCCEEEEEHHHHHHHHHH-HHHHTCCCTTCEEE
T ss_pred chhhccccCCcccccccCCCCCCeEEEEECCCCCC------------CCcEEEEeHHHHHHHHHH-HHHhhCCCccCEEE
Confidence 0001110000 01223457899999999999999 999999999887666555 55668999999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|++|+.. ++.++..|+++++.+. +++..+++.|+++++|++.++|++++.|.+..... ..+
T Consensus 209 ~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------~~~ 275 (501)
T 3ipl_A 209 SVLPIYHISGLSV-LLRAVIEGFTVRIVDK-----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE-------PYN 275 (501)
T ss_dssp ECSCTTSHHHHHH-HHHHHHHTCEEEECSS-----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS-------CTT
T ss_pred EeCcHHHHHHHHH-HHHHHHcCceEEeCCC-----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC-------cCc
Confidence 9999999999655 8899999999999873 68999999999999999999999999998875431 128
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccC
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~ 475 (737)
||.+++|||++++++.+++.+ ++++++|.||+||+++.++.... ......+ .++|+|+++++ ++
T Consensus 276 lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~--~~~~~~~-~~~G~p~~~~~-----~~------- 339 (501)
T 3ipl_A 276 LQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATP--EMLHARP-DTVGMPSANVD-----VK------- 339 (501)
T ss_dssp CCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECH--HHHHHCT-TCCBEECTTCE-----EE-------
T ss_pred ccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCc--cccccCC-CCCCCCCCCcE-----EE-------
Confidence 999999999999999999987 58999999999999865544322 1112233 68899998888 77
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
|+|++ .|+.|||+|+|| +++.|||++++.+.+ |. +||
T Consensus 340 -------------------------------i~d~~-----~~~~GEl~v~g~---~~~~gY~~~~~~t~~--~~--~g~ 376 (501)
T 3ipl_A 340 -------------------------------IKNPN-----KEGHGELMIKGA---NVMNGYLYPTDLTGT--FE--NGY 376 (501)
T ss_dssp -------------------------------EESCC-----SSCCEEEEEEST---TSCSCCSBSTTCCCS--EE--TTE
T ss_pred -------------------------------EecCC-----CCCccEEEEecc---chhhhhCcChhhcch--hc--CCc
Confidence 99976 467899999999 999999999988866 33 799
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++++....
T Consensus 377 ~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~------- 449 (501)
T 3ipl_A 377 FNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD------- 449 (501)
T ss_dssp EEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC-------
T ss_pred eecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999889999999986543
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. ..++|+++++++|+.|++|+.++++++||+|+|||++|+
T Consensus 450 -----~-----------------------------------~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~ 489 (501)
T 3ipl_A 450 -----I-----------------------------------SKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRN 489 (501)
T ss_dssp -----C-----------------------------------CHHHHHHHHHHHSCGGGSCSEEEECSSCC----------
T ss_pred -----C-----------------------------------CHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHH
Confidence 1 256899999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q psy8076 716 SIVDMARNKP 725 (737)
Q Consensus 716 ~l~~~~~~~~ 725 (737)
+|++....++
T Consensus 490 ~l~~~~~~~~ 499 (501)
T 3ipl_A 490 KLYREGHHHH 499 (501)
T ss_dssp ----------
T ss_pred HHhhcccccc
Confidence 9999877653
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=4.2e-73 Score=654.21 Aligned_cols=544 Identities=17% Similarity=0.167 Sum_probs=412.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 12 tl~~~l~~~a~~~-p~~~a~~~~~--~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 12 SLVDVVRLRALHS-PNKKSCTFLN--KELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp SHHHHHHHHHHHC-TTSEEEEEEE--TTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhC-CCCeEEEEEc--CCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 4788999999998 9999999864 234589999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCC---CHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHH-HhcCCCCCeEEEEecccccccccCC
Q psy8076 158 GAIHSVVFGGF---AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEAL-EISSCKPDYCIIFQRRCVEEAELTP 233 (737)
Q Consensus 158 G~~~vpl~~~~---~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~viv~~~~~~~~~~~~~ 233 (737)
|++++|++|.+ +.+++.++++++++++++++.... ..+.... ...+ ....+..+...
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~--------- 149 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHI---------KKFTADELNTNP-KFLKIPAIALE--------- 149 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHH---------HHHCC-----CC-EETTEEEEEGG---------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHH---------HHHHHhhhhhcc-cccccceeech---------
Confidence 99999999988 457899999999999999975421 1111000 1111 11111111110
Q ss_pred CCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcE
Q psy8076 234 GYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDV 313 (737)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~ 313 (737)
.+.. ............+++++||+||||||| .||||+++|++++....+ +...++++++|+
T Consensus 150 --~~~~----~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~ 210 (590)
T 3kxw_A 150 --SIEL----NRSSSWQPTSIKSNDIAFLQYTSGSTM------------HPKGVMVSHHNLLDNLNK-IFTSFHMNDETI 210 (590)
T ss_dssp --GCCG----GGGGGCCCCCCCTTSEEEEEECSSCSS------------SCCEEEEEHHHHHHHHHH-HHHHTTCCTTCE
T ss_pred --hccc----cccccCCCCCCCCCCeEEEEeCcCCCC------------CceEEEeeHHHHHHHHHH-HHHhhCCCCcCe
Confidence 0000 001112234567899999999999999 999999999987766665 455689999999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
+++++|++|++|+...++.+|+.|+++++.+.... ..++..+++.|+++++|++.++|+++..+.+...... ....++
T Consensus 211 ~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~l 288 (590)
T 3kxw_A 211 IFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSF-LQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK-KEGLDL 288 (590)
T ss_dssp EEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHH-HHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG-GTTCCC
T ss_pred EEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHH-HHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh-ccCCCc
Confidence 99999999999977668999999999999764111 1178999999999999999999999999887633211 145578
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhcC------CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCccee
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKSFN------VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNI 467 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~ 467 (737)
++||.+++|||++++++.++|.+.++ ..++|.||+||+++.++...... .... .....
T Consensus 289 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~---~~~~-~~~~~------------ 352 (590)
T 3kxw_A 289 SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS---SYKT-LTLAK------------ 352 (590)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTS---CCCE-EEECS------------
T ss_pred hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCC---Ccee-eeecH------------
Confidence 99999999999999999999998873 36999999999998766543210 0000 00000
Q ss_pred eeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCC-CCccCCCcceEEEEecCCCCCcccccccChhhhHH
Q psy8076 468 VMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546 (737)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~-g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~ 546 (737)
.....+.+.............+..|.|.++ ++|+|++ +++++.|+.|||+|+|| +++.|||++++.+.+
T Consensus 353 -----~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~p~~t~~ 422 (590)
T 3kxw_A 353 -----EQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSN---SVAKGYWNQPEETRH 422 (590)
T ss_dssp -----CCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEEST---TSCCCBTTCHHHHHH
T ss_pred -----HHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCC---cccccccCChhHHHH
Confidence 000000011111111112223455666666 6699976 89999999999999999 999999999999998
Q ss_pred hhccC------CCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHH-hcCCCcc--eeEEecccCCCCCc
Q psy8076 547 IYFTK------FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVV-LSHPDVG--DTAVIGVPEPTKGE 617 (737)
Q Consensus 547 ~~~~~------~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l-~~~p~V~--~a~vv~~~~~~~~~ 617 (737)
.|... ..+||+|||+|++| ||+|+|+||+||+||++|+||+|.|||++| ..+|.|. +|+|++++++. ++
T Consensus 423 ~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~ 500 (590)
T 3kxw_A 423 AFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EY 500 (590)
T ss_dssp HHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EE
T ss_pred HHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-Cc
Confidence 87542 22399999999999 999999999999999999999999999999 7789998 89999998875 67
Q ss_pred ceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCC-ceeee
Q psy8076 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP-IAAFK 696 (737)
Q Consensus 618 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~p~ 696 (737)
.++++++..+. .......++|+++++++++. +++|.
T Consensus 501 ~~~~~v~~~~~-------------------------------------------~~~~~~~~~l~~~l~~~l~~~~~~p~ 537 (590)
T 3kxw_A 501 KLTVMCEVKNR-------------------------------------------FMDDVAQDNLFNEIFELVYENHQLEV 537 (590)
T ss_dssp EEEEEEEESCT-------------------------------------------TCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred eEEEEEEeccc-------------------------------------------cccchhHHHHHHHHHHHHHHHcCCce
Confidence 88899988765 11233455666777776664 55654
Q ss_pred ---eEEEcCCCCCCCCchhhHHHHHHHHcCCCCCchhhhhcc
Q psy8076 697 ---LSTSVTGLPRTRSGKTARKSIVDMARNKPLRVRLVYLQQ 735 (737)
Q Consensus 697 ---~~~~v~~lP~t~sGKi~R~~l~~~~~~~~~~~~~~~~~~ 735 (737)
.++.+++||+|++||++|++|++++.++.+.....|-++
T Consensus 538 ~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~~~~~~~~ 579 (590)
T 3kxw_A 538 HTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPIVATWQLN 579 (590)
T ss_dssp CEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCCSEEEETT
T ss_pred eEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCceeeeeccc
Confidence 444558999999999999999999999988876655443
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.3e-72 Score=645.73 Aligned_cols=512 Identities=15% Similarity=0.133 Sum_probs=309.4
Q ss_pred HHHHHhhhhhccCCCceEEEEeCC----CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSP----VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~----~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
+.++|+++++++ ||++|+++.+. ..+..+++||+||+++++++|+.|.+.|+ +||+|+|+++|++++++++|||
T Consensus 22 l~~~l~~~a~~~-p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~ 99 (562)
T 3ite_A 22 PSHYIETWAKTH-PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGI 99 (562)
T ss_dssp TTHHHHHHHHHC-TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHH
Confidence 578999999998 99999997642 12335899999999999999999999999 7999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC
Q psy8076 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 155 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~ 234 (737)
+++|++++|+++.++.+++.+++++++++++|+++....... .+ ....+ +..
T Consensus 100 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------------~~-~~~~~--~~~----------- 151 (562)
T 3ite_A 100 MKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE--------------LP-PETKV--LDT----------- 151 (562)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC--------------CC-TTCEE--EET-----------
T ss_pred HHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc--------------cC-cccee--ecc-----------
Confidence 999999999999999999999999999999999875432110 00 01111 111
Q ss_pred CcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh-------hhh
Q psy8076 235 YDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS-------VIY 306 (737)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~-------~~~ 306 (737)
....+.+....... .......+++++||+||||||| .||||+++|++++........ ..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~ 219 (562)
T 3ite_A 152 KNQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTG------------TPKGVRVSRHNLSSFSDAWGKLIGNVAPKSL 219 (562)
T ss_dssp TCHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---------------CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cchhhhhhcccccccccccCCCCCCcEEEEECCCCCC------------CCcEEEECchhHHHHHHHHHhhhccccchhc
Confidence 01122222222222 2233456788999999999999 999999999887665543222 124
Q ss_pred cCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc
Q psy8076 307 NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386 (737)
Q Consensus 307 ~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~ 386 (737)
.+...+++++..++.|+.+. ..++.++..|+++++.+. ...+..+++.++++++|++.++|++++.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~------ 288 (562)
T 3ite_A 220 ELGGVGKFLCLASRAFDVHI-GEMFLAWRFGLCAVTGER----LSMLDDLPRTFRELGVTHAGIVPSLLDQTGL------ 288 (562)
T ss_dssp GCTTTCEEECCSCTTSTHHH-HHHHHHHHTTCEEEECCH----HHHHHSHHHHHHHTTCCEEEECHHHHHHHTC------
T ss_pred ccCcCceEEEecCchhhhhH-HHHHHHHhcccEEEecch----hhCHHHHHHHHHHcCCCEEEcCHHHHhhccc------
Confidence 57888999999999999884 558889999999998653 1235678999999999999999999887643
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcce
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~ 466 (737)
...++++||.+++||+++++++.++|.+.+++.++|.||+||+++.++.... ...... .++|+|++++.
T Consensus 289 --~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~---~~~~~~-~~~G~p~~~~~----- 357 (562)
T 3ite_A 289 --VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI---LPDSDT-RCIGHPLGDSV----- 357 (562)
T ss_dssp --CGGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC---CTTSCT-TEEEEECTTCE-----
T ss_pred --CccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee---cCCCCC-ccccccCCCCe-----
Confidence 2336789999999999999999999999889999999999999876665433 122233 67889988888
Q ss_pred eeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcC-CCCccCCCcceEEEEecCCCCCcccccccChhhhH
Q psy8076 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~ 545 (737)
++ |+|+ +++++++|+.|||+|+|| +++.|||++++.+.
T Consensus 358 ~~--------------------------------------i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~p~~t~ 396 (562)
T 3ite_A 358 AH--------------------------------------VLAPGSNEHVKKGMAGELVIEGS---LVANGYLNRPDAKG 396 (562)
T ss_dssp EE--------------------------------------EECTTSSCBCCTTSCEEEEEEST---TSCCEESSCTTCCS
T ss_pred EE--------------------------------------EEeCCCCCCCCCCCceEEEEecc---ccchhhCCCccccc
Confidence 77 9995 588899999999999999 99999999998776
Q ss_pred HhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcC-CCcceeEEecccCCCCCcceEEEEE
Q psy8076 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSH-PDVGDTAVIGVPEPTKGEIPFCLYI 624 (737)
Q Consensus 546 ~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~-p~V~~a~vv~~~~~~~~~~~~a~v~ 624 (737)
..+ .+.++||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+| |.+.+++|++.+++..++..+++++
T Consensus 397 ~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 475 (562)
T 3ite_A 397 FCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFV 475 (562)
T ss_dssp EEE-ETTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------------
T ss_pred ccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEE
Confidence 442 32234999999999999999999999999999999999999999999998 8889999999988877776666665
Q ss_pred eecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCC
Q psy8076 625 KKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGL 704 (737)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~l 704 (737)
........ +. ..........+.++|+++|+++||.||+|+.|+++++|
T Consensus 476 ~~~~~~~~-------~~-------------------------~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~l 523 (562)
T 3ite_A 476 ASSGAAVR-------GE-------------------------LRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFI 523 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccccccc-------cc-------------------------ccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccC
Confidence 54330000 00 00000112345678999999999999999999999999
Q ss_pred CCC-CCchhhHHHHHHHHcCCCCCc
Q psy8076 705 PRT-RSGKTARKSIVDMARNKPLRV 728 (737)
Q Consensus 705 P~t-~sGKi~R~~l~~~~~~~~~~~ 728 (737)
|+| ++||+||++|++++.+....+
T Consensus 524 P~t~~~GKi~r~~L~~~~~~~~~~~ 548 (562)
T 3ite_A 524 PLRDTSAKTDAKALEHMFHTLSLGE 548 (562)
T ss_dssp -------------------------
T ss_pred CCCCCCCcchHHHHHHHHhccCHHH
Confidence 998 999999999999998655433
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.3e-71 Score=633.88 Aligned_cols=518 Identities=19% Similarity=0.216 Sum_probs=403.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ |+.+++... .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 22 tl~~~l~~~a~~~-p~~~~~~~~---~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (576)
T 3gqw_A 22 TLVDALDYAALSS-AGMNFYDRR---CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYA 97 (576)
T ss_dssp SHHHHHHHHTTSS-CEEEEECTT---SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhhCC-CCeEEeCCC---CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 6889999999988 998877543 234589999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCC-------HHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccc
Q psy8076 158 GAIHSVVFGGFA-------ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230 (737)
Q Consensus 158 G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~ 230 (737)
|++++|+++.++ .+++.+++++++++++++++. +...+.......+ . +.++..
T Consensus 98 G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~---------~~~~~~~~~~~~~-~---~~~~~~------- 157 (576)
T 3gqw_A 98 GLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDE---------WLPLVNAATHDNP-E---LHVLSH------- 157 (576)
T ss_dssp TCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGG---------GHHHHHHHGGGCT-T---CEEEEH-------
T ss_pred CCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHH---------HHHHHHHhhccCC-c---ceecch-------
Confidence 999999999999 899999999999999999875 2233333322222 1 111110
Q ss_pred cCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCC
Q psy8076 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310 (737)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~ 310 (737)
.+.+... ..........+++++||+||||||| .||||+++|++++.+........+++++
T Consensus 158 -------~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 217 (576)
T 3gqw_A 158 -------AWFKALP-EADVALQRPVPNDIAYLQYTSGSTR------------FPRGVIITHREVMANLRAISHDGIKLRP 217 (576)
T ss_dssp -------HHHHTSC-CCCCCCCCCCTTSEEEEECTTSCSS------------SCCCEEEEHHHHHHHHHHHHHTTSCCCT
T ss_pred -------hhhhccc-ccccccCCCCCCCeEEEEeCCCCCC------------CCceEEeeHHHHHHHHHHhhhcccCCCC
Confidence 0111000 0112233456899999999999999 9999999999987776654444588999
Q ss_pred CcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccC
Q psy8076 311 DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQ 390 (737)
Q Consensus 311 ~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~ 390 (737)
+|++++.+|++|++|+...++.++..|+++++.+.... ..++..+++.|+++++|+++++|++++.+.+...... ...
T Consensus 218 ~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~ 295 (576)
T 3gqw_A 218 GDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDF-AMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD-LAE 295 (576)
T ss_dssp TCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHH-HHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH-HTT
T ss_pred cceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHh-hhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc-ccc
Confidence 99999999999999977667888999999988763211 1478899999999999999999999998876543211 134
Q ss_pred CCCCCccEEEeecCCCCHHHHHHHHHhc------CCcccccccccccccccccccccCCCCCCCCCCc--------cCCC
Q psy8076 391 YSTDSLRYLFVAGEHCDHETKNWAEKSF------NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYS--------TGLP 456 (737)
Q Consensus 391 ~~l~~Lr~i~~gGe~l~~~~~~~~~~~~------~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~--------~G~p 456 (737)
.++++||.+++|||++++++.++|.+.+ +..++|.||+||+++.++...... .... .. .|.+
T Consensus 296 ~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~---~~~~-~~~~~~~~~~~g~~ 371 (576)
T 3gqw_A 296 LDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEAS---GVVV-NEVDRDILEYQGKA 371 (576)
T ss_dssp CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTC---CCCE-EEEEHHHHHHHCBC
T ss_pred CChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccC---Cccc-cccchhhhcccCcc
Confidence 5789999999999999999999999887 678999999999997766542210 0000 00 0000
Q ss_pred c-CCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCccc
Q psy8076 457 F-PGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMS 535 (737)
Q Consensus 457 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~ 535 (737)
. ++.. .......+..|.++++++++|+|++|++++.|+.|||+|+|| +++.
T Consensus 372 ~~~~~~-------------------------~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~---~~~~ 423 (576)
T 3gqw_A 372 VAPGAE-------------------------TRAVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISGP---SLMS 423 (576)
T ss_dssp CCCCTT-------------------------CCCEEEEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEEST---TSCC
T ss_pred cccCcc-------------------------ccCccceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeCc---cccc
Confidence 0 0000 000011124455666666669999999999999999999999 9999
Q ss_pred ccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCC
Q psy8076 536 TLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTK 615 (737)
Q Consensus 536 gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~ 615 (737)
|||++++.+.+.+ . +|||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|++..++.
T Consensus 424 gY~~~~~~~~~~~-~--~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~- 498 (576)
T 3gqw_A 424 GYFGDQVSQDEIA-A--TGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ- 498 (576)
T ss_dssp CBTTCHHHHHHHH-H--HSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT-
T ss_pred cccCCcccccccc-C--CCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC-
Confidence 9999998776643 2 789999999999 7999999999999999999999999999999999999999888887653
Q ss_pred CcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhc-CCcee
Q psy8076 616 GEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAI-GPIAA 694 (737)
Q Consensus 616 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~ 694 (737)
+.++++++.... .....+++++.+++++ +.+++
T Consensus 499 -~~~~~~~~~~~~---------------------------------------------~~~~~~~l~~~l~~~l~~~~~~ 532 (576)
T 3gqw_A 499 -EKIILQIQCRIS---------------------------------------------DEERRGQLIHALAARIQSEFGV 532 (576)
T ss_dssp -SCEEEEEECCCC---------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -ccEEEEEEEecC---------------------------------------------chhHHHHHHHHHHHHHHHHhCC
Confidence 345555554432 2345677888888888 68999
Q ss_pred eeeEEEcC--CCCCCCCchhhHHHHHHHHcCC
Q psy8076 695 FKLSTSVT--GLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 695 p~~~~~v~--~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
|..+.+++ +||+|++||++|++|++++.+.
T Consensus 533 p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 564 (576)
T 3gqw_A 533 TAAIDLLPPHSIPRTSSGKPARAEAKKRYQKA 564 (576)
T ss_dssp CEEEEEECSSCSCBCTTSSBCHHHHHHHHHHH
T ss_pred ceeEEEECCCCcCcCCCccchHHHHHHHHHHH
Confidence 99988887 9999999999999999998753
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.8e-57 Score=510.51 Aligned_cols=424 Identities=17% Similarity=0.173 Sum_probs=310.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEeC---CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDS---PVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~---~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
++.++|+++++++ ||++|+++.+ ...+..+++||+||.++++++|++|+++|+ +||+|+|+++|++++++++|||
T Consensus 25 tl~~~l~~~a~~~-pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~ 102 (480)
T 3t5a_A 25 SLPAALRACARLQ-PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA 102 (480)
T ss_dssp CHHHHHHHHHHHS-TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence 4789999999998 9999999875 223445899999999999999999999996 9999999999999999999999
Q ss_pred HHcCCEEEecCC---CCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCC-CCCeEEEEecccccccc
Q psy8076 155 VRLGAIHSVVFG---GFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC-KPDYCIIFQRRCVEEAE 230 (737)
Q Consensus 155 ~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~viv~~~~~~~~~~ 230 (737)
+++|+++||+++ .++.+++.+++++++++++|++.... ..+.+.....+. ....++.+...
T Consensus 103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~------ 167 (480)
T 3t5a_A 103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRPGESPPSIIEVDLL------ 167 (480)
T ss_dssp HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC------CCEEEEGGGS------
T ss_pred HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccccccccceeEeccc------
Confidence 999999999999 78899999999999999999987532 222221111110 01122221110
Q ss_pred cCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCC
Q psy8076 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310 (737)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~ 310 (737)
.. ............+++++||+||||||| .||||+++|++++.+..+ +...+++..
T Consensus 168 --~~---------~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~-~~~~~~~~~ 223 (480)
T 3t5a_A 168 --DL---------DAPNGYTFKEDEYPSTAYLQYTSGSTR------------TPAGVVMSHQNVRVNFEQ-LMSGYFADT 223 (480)
T ss_dssp --CT---------TCC---CCCCSSCCSEEEEECC------------------CCCEEEEHHHHHHHHHH-HHHHHCTTT
T ss_pred --cc---------ccccCCCCCCCCCCceEEEEecCCCCC------------CCcEEEEeHHHHHHHHHH-HHHHhcccc
Confidence 00 000112234467889999999999999 999999999987766655 344567776
Q ss_pred ------CcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCC
Q psy8076 311 ------DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKD 384 (737)
Q Consensus 311 ------~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~ 384 (737)
+|++++.+|++|++|+.+.++.+|+.|+++++.+.... ..++..+++.++++++| +.++|+++..+......
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~-~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~ 301 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSF-LQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT 301 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHH-HHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHH-HHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC
Confidence 99999999999999988788999999999999763110 13789999999999999 78888888877764322
Q ss_pred CccccCCCCCCccEEEeecCCCCHHHHHHHHHhcC------CcccccccccccccccccccccCCCCCCC---CCCccCC
Q psy8076 385 STLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN------VTMLNHWWQTETGHSITAHCLGYQHDTVP---PKYSTGL 455 (737)
Q Consensus 385 ~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~~~~~~~~~---~~~~~G~ 455 (737)
.......++++||.+++|||++++++.++|.+.++ ..++|.||+||+++.++............ .....|.
T Consensus 302 ~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 381 (480)
T 3t5a_A 302 DDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGH 381 (480)
T ss_dssp TGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTB
T ss_pred cccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCc
Confidence 11124567899999999999999999999999884 36999999999998776643211000000 0000011
Q ss_pred CcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCC-CCccCCCcceEEEEecCCCCCcc
Q psy8076 456 PFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGTM 534 (737)
Q Consensus 456 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~-g~~~~~g~~GEL~i~g~~~~~~~ 534 (737)
+.+... ......+..|.+.+ ++++|+|++ |++||.|+.|||+|+|| +++
T Consensus 382 ~~~~~~--------------------------~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~---~v~ 431 (480)
T 3t5a_A 382 AKPCAG--------------------------GGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGD---NVA 431 (480)
T ss_dssp CCCCCS--------------------------SSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEEST---TSC
T ss_pred eeecCC--------------------------CCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCC---ccc
Confidence 110000 00111234455555 666699976 89999999999999999 999
Q ss_pred cccccChhhhHHhhcc---------CCCCeeecCceEEEecCceEEEEee
Q psy8076 535 STLYKAPQRFMKIYFT---------KFPGYYDTMDAGYYDENGYIYVTAR 575 (737)
Q Consensus 535 ~gy~~~~~~~~~~~~~---------~~~g~~~TGDl~~~~~dG~l~i~GR 575 (737)
.|||++++.|.+.|.. ..+|||+|||+|+++ ||+|+|+||
T Consensus 432 ~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 432 NGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 9999999999998841 146799999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.5e-53 Score=455.43 Aligned_cols=316 Identities=16% Similarity=0.193 Sum_probs=263.8
Q ss_pred CCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccc
Q psy8076 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLA 335 (737)
Q Consensus 256 ~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~ 335 (737)
.|++|||+||||||| .||||+++|++++.+..+ +...++++++|++++++|++|++|+.. ++.++.
T Consensus 36 ~d~~a~Il~TSGTTG------------~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~ 101 (358)
T 4gs5_A 36 GGAREFVLHTSGSTG------------MPKPITVTRAQLAASAAM-TGKALSLGPGTRALVCLNVGYIAGLMM-LVRGME 101 (358)
T ss_dssp HTCSEEEEEEECTTS------------SEEEEEEEHHHHHHHHHH-HHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHH
T ss_pred CCCCEEEEECCcccc------------cCcEEEEeHHHHHHHHHH-HHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHH
Confidence 478999999999999 999999999887666554 566789999999999999999999654 788999
Q ss_pred cCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHH
Q psy8076 336 AGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAE 415 (737)
Q Consensus 336 ~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~ 415 (737)
.|+++++.+.. .+ +++.|+++++|++.++|++++.|.+.... ..++++||.+++||+++++++.+++.
T Consensus 102 ~g~~~~~~~~~----~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-----~~~l~~lr~v~~gG~~l~~~~~~~~~ 169 (358)
T 4gs5_A 102 LDWELTVTEPT----AN---PLAGLDHADFDFVAMVPMQLQSILENSAT-----SGQVDRLGKVLLGGAPVNHALAMQIS 169 (358)
T ss_dssp HTCEEEEECCC----SC---TTTTCSSCCCSEEEECHHHHHHHHHCTTT-----GGGGGGGCSEEECSSCCCHHHHHHHH
T ss_pred hCcEEEecCcc----cc---HHHHHHHhCCeEEEcChHHHHHhhccccc-----cccCCcceEEEEcccCCCchheeccc
Confidence 99999998642 22 35678899999999999999999886543 33688999999999999999999998
Q ss_pred HhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCC
Q psy8076 416 KSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495 (737)
Q Consensus 416 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (737)
+ ++.+++|.||+||+++.++....+ .... +.+|.|.||+. +.
T Consensus 170 ~-~~~~~~~~YG~TEt~~~~~~~~~~----~~~~-g~~~~~~pgv~-----~~--------------------------- 211 (358)
T 4gs5_A 170 D-LAMPVYQSYGMTETVSHVALKALN----GPEA-SELYVFLPGIQ-----YG--------------------------- 211 (358)
T ss_dssp T-CSSCEEEEEECGGGSSEEEEEECS----STTC-CSCEEECTTCE-----EE---------------------------
T ss_pred c-cCceEEeccccccccceeeccccc----cccc-ceeeccCCCeE-----EE---------------------------
Confidence 6 589999999999999877665431 1122 56666666655 33
Q ss_pred CCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEee
Q psy8076 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575 (737)
Q Consensus 496 ~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR 575 (737)
+ ++.|||+++|++ . .+|||+|||+|++|+|| ++|+||
T Consensus 212 -----------~----------~~~Gel~~~g~~---~------------------~~g~~~TGDlg~~d~~g-~~~~GR 248 (358)
T 4gs5_A 212 -----------V----------DERGCLHISGAV---T------------------NGQTVQTNDLVEIHGNA-FQWIGR 248 (358)
T ss_dssp -----------E----------CTTSEEEEESGG---G------------------TTCCEEEEEEEEECSSE-EEEEEE
T ss_pred -----------e----------cCcCceEEeccc---c------------------cCcceecCCccccccCc-eEEccc
Confidence 3 345999999872 1 27899999999999988 677899
Q ss_pred cCCeEeeCcEEechHHHHHHH---hcCCCcceeEEe-cccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccC
Q psy8076 576 DDDVINVAGHRLSTSALEDVV---LSHPDVGDTAVI-GVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLL 651 (737)
Q Consensus 576 ~dd~Ik~~G~rv~~~eIE~~l---~~~p~V~~a~vv-~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (737)
+||+||++|+||+|.|||++| .+||.|.+|+|+ +.+++..|+.++|+|+....
T Consensus 249 ~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~----------------------- 305 (358)
T 4gs5_A 249 ADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP----------------------- 305 (358)
T ss_dssp GGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-----------------------
T ss_pred ccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-----------------------
Confidence 999999999999999999877 458999998887 67788888999998876543
Q ss_pred CCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 652 TNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
+...++|+++|+++|+.|++|+.|+++++||+|++||+||++|++.+.+.
T Consensus 306 -----------------------~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 306 -----------------------EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp -----------------------HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred -----------------------CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 44667899999999999999999999999999999999999999998764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=5.4e-48 Score=427.71 Aligned_cols=333 Identities=17% Similarity=0.173 Sum_probs=263.6
Q ss_pred cccC-CCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH--HhhhhcCCCCcEEEEecccccccchhhh
Q psy8076 253 PVEA-NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT--MSVIYNMGQDDVWWTASDMGWVVGHSYI 329 (737)
Q Consensus 253 ~~~~-~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~g~~~~ 329 (737)
..++ +++++++||||||| .||||+++|+++....... ....++++++|++++.+|++|..+....
T Consensus 81 ~~~~~~~~a~i~~TSGTTG------------~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 148 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTG------------NPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGF 148 (436)
T ss_dssp CSCHHHHEEEEEECSCSSS------------CCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHH
T ss_pred cCCCcCCeEEEEECCCcCC------------CCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHH
Confidence 4556 88999999999999 9999999998865544332 1234688999999999999877776666
Q ss_pred hhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHH
Q psy8076 330 CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHE 409 (737)
Q Consensus 330 ~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~ 409 (737)
++.++..|+++++.+. .++..+++.|+++++|+++++|+++..|.+...... ...++++||.+++|||+++++
T Consensus 149 ~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~~~lr~i~~gGe~l~~~ 221 (436)
T 3qov_A 149 QYGAERLGCLTVPAAA-----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEG--IDPRETTLKTLVIGAEPHTDE 221 (436)
T ss_dssp HHHHHHHTCEEECCCS-----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTT--CCTTSSSCCEEEEESSCCCHH
T ss_pred HHHHHHcCCEEEeCCC-----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcC--CCcccCCccEEEEeCCcCCHH
Confidence 7889999999998763 589999999999999999999999999987643211 222478999999999999999
Q ss_pred HHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccccccccc
Q psy8076 410 TKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRK 489 (737)
Q Consensus 410 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (737)
+.+++.+.+|++++|.||+||+++..+.... .. . ...+.|.+++. ++
T Consensus 222 ~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~-----~~-~-~g~~~~~~~~~-----v~--------------------- 268 (436)
T 3qov_A 222 QRRKIERMLNVKAYNSFGMTEMNGPGVAFEC-----QE-Q-NGMHFWEDCYL-----VE--------------------- 268 (436)
T ss_dssp HHHHHHHHHTSEEEEEEEEGGGTEEEEEEEC-----TT-C-SSEEECTTTEE-----EE---------------------
T ss_pred HHHHHHHHhCccEEecCcchhhcCCeeEEec-----CC-C-CeeEEccCceE-----EE---------------------
Confidence 9999999999999999999999655332211 00 1 22445555655 55
Q ss_pred CCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCc
Q psy8076 490 NVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENG 568 (737)
Q Consensus 490 ~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG 568 (737)
|+| ++|+++++|+.|||+|+|+. . .. + ..+||+|||+|+++++|
T Consensus 269 -----------------i~d~~~g~~~~~g~~Gel~v~~~~---~------------~~-~--~~~~y~TGDl~~~~~~g 313 (436)
T 3qov_A 269 -----------------IIDPETGEPVPEGEIGELVLTTLD---R------------EM-M--PLIRYRTRDLTRILPGK 313 (436)
T ss_dssp -----------------EECTTTCSBCSTTCCEEEEEEESS---C------------CS-S--CCCSEEEEEEECEECSC
T ss_pred -----------------EEECCCCCCCCCCCceEEEEeccC---c------------CC-c--eEEEEEcCCEEEEcCCC
Confidence 999 78999999999999999861 1 01 1 26899999999999998
Q ss_pred ------e---EEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccc
Q psy8076 569 ------Y---IYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLI 639 (737)
Q Consensus 569 ------~---l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~ 639 (737)
+ ++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|+++ +
T Consensus 314 c~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~----------- 381 (436)
T 3qov_A 314 CPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-D----------- 381 (436)
T ss_dssp CTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-T-----------
T ss_pred CCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-C-----------
Confidence 5 699999999999999999999999999999999999999999888888999999998 5
Q ss_pred cccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCc-eeeeeEEEcC--CCCCCCCchhhHH
Q psy8076 640 GFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPI-AAFKLSTSVT--GLPRTRSGKTARK 715 (737)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~v~--~lP~t~sGKi~R~ 715 (737)
.. .......+++++.+++.|+.+ ++|..+.+++ +||+|+ ||++|.
T Consensus 382 -~~-----------------------------~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 382 -LS-----------------------------TDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp -TC-----------------------------CCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred -cc-----------------------------ccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 11 122233556777777777777 8899999998 999999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.6e-46 Score=415.12 Aligned_cols=336 Identities=17% Similarity=0.133 Sum_probs=265.5
Q ss_pred ccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH--HhhhhcCCCCcEEEEecccc-cccchhh
Q psy8076 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT--MSVIYNMGQDDVWWTASDMG-WVVGHSY 328 (737)
Q Consensus 252 ~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~~-~~~g~~~ 328 (737)
....++++++++||||||| .||||+++|+++....... ....++++++|++++..|++ |..+ ..
T Consensus 87 ~~~~~~~~~~i~~TSGTTG------------~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 153 (443)
T 2y4o_A 87 FAVPREQVVRVHASSGTTG------------KPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGG-LG 153 (443)
T ss_dssp CSSCGGGCCEEEEECCSSS------------SCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HH
T ss_pred cCCChhheEEEEECCCCCC------------CceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccH-HH
Confidence 3457789999999999999 9999999998865544322 22357889999999999985 4444 44
Q ss_pred hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCH
Q psy8076 329 ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDH 408 (737)
Q Consensus 329 ~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~ 408 (737)
.++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+...... ....+++||.+++|||++++
T Consensus 154 ~~~~~~~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~--~~~~~~~lr~i~~gGe~l~~ 226 (443)
T 2y4o_A 154 IHYGAERLGCMVVPMSG-----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG--MDPAESSLKIGIFGAEPWTQ 226 (443)
T ss_dssp HHHHHHHHTCEEECCCS-----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT--CCGGGSSCCEEEEESSCCCH
T ss_pred HHHHHHHcCCEEEECCC-----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcC--CCcccCCceEEEECCCcCCH
Confidence 57889999999988763 589999999999999999999999999987532210 11124799999999999999
Q ss_pred HHHHHHHHhcCCcccccccccccccc-cccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccccccc
Q psy8076 409 ETKNWAEKSFNVTMLNHWWQTETGHS-ITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487 (737)
Q Consensus 409 ~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (737)
++.+++.+.+|++++|.||+||+++. ++..+. . .. ...+.|.+++. ++
T Consensus 227 ~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~---~---~~-~g~~~~~~~~~-----~~------------------- 275 (443)
T 2y4o_A 227 ALRNEVETRVGIDALDIYGLSEVMGPGVACECV---E---TK-DGPVIWEDHFY-----PE------------------- 275 (443)
T ss_dssp HHHHHHHHHHTCEEEEEEEETTTTEEEEEEECT---T---TC-CSEEECTTTEE-----EE-------------------
T ss_pred HHHHHHHHHhCcCEEeccCchhhcCCeEEeccC---C---CC-CceEEccCCeE-----EE-------------------
Confidence 99999999999999999999998543 333221 0 00 01233445555 55
Q ss_pred ccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec
Q psy8076 488 RKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566 (737)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~ 566 (737)
|+| ++|+++|+|+.|||+|+|.. . +.+ ..+||+|||+|++++
T Consensus 276 -------------------i~d~~~g~~~~~G~~Gel~v~~~t---~------------~~~---p~~~y~TGDl~~~~~ 318 (443)
T 2y4o_A 276 -------------------IIDPVTGEVLPDGSQGELVFTSLT---K------------EAM---PVIRYRTRDLTALLP 318 (443)
T ss_dssp -------------------EECTTTCCBCCTTCCEEEEEEESS---C------------SSS---CCSSEEEEEEECEEC
T ss_pred -------------------EEcCCCCCCCCCCCceEEEEeCCC---c------------ccC---hhheeecCCEEEEcC
Confidence 999 46999999999999999851 1 111 267999999999999
Q ss_pred C-ceE-----EEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeec--CCCCcCCcccc
Q psy8076 567 N-GYI-----YVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR--IPLDKMGFSGL 638 (737)
Q Consensus 567 d-G~l-----~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~--~~~~~~~~~~~ 638 (737)
+ |++ +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|++.+ +
T Consensus 319 ~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~---------- 388 (443)
T 2y4o_A 319 PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA---------- 388 (443)
T ss_dssp CSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHH----------
T ss_pred CCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccc----------
Confidence 9 987 899999999999999999999999999999999999999888767788999999875 2
Q ss_pred ccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCce-eeeeEEEc--CCCCCCCCchhhHH
Q psy8076 639 IGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIA-AFKLSTSV--TGLPRTRSGKTARK 715 (737)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~~~~v--~~lP~t~sGKi~R~ 715 (737)
. .......++++++|+++|+.++ +|..+.++ ++||+|++||++|+
T Consensus 389 --~------------------------------~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~ 436 (443)
T 2y4o_A 389 --A------------------------------SVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRV 436 (443)
T ss_dssp --T------------------------------TCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSE
T ss_pred --c------------------------------cchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEE
Confidence 0 0112345678888888888774 88877777 59999999999986
Q ss_pred HH
Q psy8076 716 SI 717 (737)
Q Consensus 716 ~l 717 (737)
..
T Consensus 437 ~~ 438 (443)
T 2y4o_A 437 ID 438 (443)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=7.2e-46 Score=410.77 Aligned_cols=334 Identities=16% Similarity=0.151 Sum_probs=265.1
Q ss_pred ccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH--HhhhhcCCCCcEEEEecccc-cccchhh
Q psy8076 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT--MSVIYNMGQDDVWWTASDMG-WVVGHSY 328 (737)
Q Consensus 252 ~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~~-~~~g~~~ 328 (737)
....++++++++||||||| .||||+++|+++....... ....++++++|++++..|++ |..+ ..
T Consensus 85 ~~~~~~~~~~i~~TSGTTG------------~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~ 151 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTG------------KPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGG-LG 151 (437)
T ss_dssp CSSCGGGCCEEEECCCTTS------------SCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HH
T ss_pred ccCChhHeEEEEECCCCCC------------CceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccc-hH
Confidence 3456789999999999999 9999999998865544322 22357889999999999984 5555 34
Q ss_pred hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCH
Q psy8076 329 ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDH 408 (737)
Q Consensus 329 ~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~ 408 (737)
.++.++..|+++++.+. .++..+++.|+++++|+++++|+++..|.+...... ...++++||.+++|||++++
T Consensus 152 ~~~~~~~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~--~~~~~~~lr~i~~gGe~l~~ 224 (437)
T 2y27_A 152 AHYGAERAGLTVIPFGG-----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG--LDPVQSSLRIGIFGAEPWTN 224 (437)
T ss_dssp HHHHHHHTTCEEECCCS-----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT--CCGGGSSCCEEEEESSCCCH
T ss_pred HHHHHHHcCCEEEeCCC-----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC--CCcccCCeeEEEEcCccCCH
Confidence 47889999999987653 589999999999999999999999999987532210 11124789999999999999
Q ss_pred HHHHHHHHhcCCcccccccccccccc-cccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccccccc
Q psy8076 409 ETKNWAEKSFNVTMLNHWWQTETGHS-ITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487 (737)
Q Consensus 409 ~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (737)
++.+++.+.+|++++|.||+||+++. ++..+. . .. ...+.|.+++. ++
T Consensus 225 ~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~---~---~~-~g~~~~~~~~~-----~~------------------- 273 (437)
T 2y27_A 225 DMRVAIEQRMGIDAVDIYGLSEVMGPGVASECV---E---TK-DGPTIWEDHFY-----PE------------------- 273 (437)
T ss_dssp HHHHHHHHHHTSEEEEEEEETTTTEEEEEECCT---T---TC-SSCEECTTTEE-----EE-------------------
T ss_pred HHHHHHHHHHCcCEEecCCchhhcCCeeEEecC---C---CC-CceeEccCceE-----EE-------------------
Confidence 99999999899999999999998543 333221 0 00 11333445555 55
Q ss_pred ccCCCCCCCCcccccceEEEEcC-CCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec
Q psy8076 488 RKNVPKGQNATHFTSVEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566 (737)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~ 566 (737)
|+|+ +|+++|.|+.|||+|+|. .. +.+ ..+||+|||+|++++
T Consensus 274 -------------------i~d~~~g~~~~~g~~Gel~v~~~---t~------------~~~---~~~~y~TGDl~~~~~ 316 (437)
T 2y27_A 274 -------------------IIDPETGEVLPDGELGELVFTSL---TK------------EAL---PIIRYRTRDLTRLLP 316 (437)
T ss_dssp -------------------EECTTTCCBCCTTCCEEEEEEES---SC------------SSS---CCCSEEEEEEECEEC
T ss_pred -------------------EEcCCCCCCCCCCCccEEEEecC---Cc------------CCc---hhheeecCCEEEEeC
Confidence 9995 599999999999999985 11 111 268999999999999
Q ss_pred -CceE-----EEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcccccc
Q psy8076 567 -NGYI-----YVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIG 640 (737)
Q Consensus 567 -dG~l-----~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~ 640 (737)
+|++ +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|++.++
T Consensus 317 ~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~------------ 384 (437)
T 2y27_A 317 GTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPE------------ 384 (437)
T ss_dssp CSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTT------------
T ss_pred CCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCC------------
Confidence 6985 8999999999999999999999999999999999999998887778889999988765
Q ss_pred ccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCce-eeeeEEEc--CCCCCCCCchhhHHH
Q psy8076 641 FGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIA-AFKLSTSV--TGLPRTRSGKTARKS 716 (737)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~~~~v--~~lP~t~sGKi~R~~ 716 (737)
. .......++++++++++|+.++ +|..+.++ ++||+|+ ||++|+.
T Consensus 385 ~------------------------------~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 385 T------------------------------APDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp T------------------------------TTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred c------------------------------cchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 1 0112345678888889898884 88888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=2.5e-29 Score=271.53 Aligned_cols=237 Identities=16% Similarity=0.116 Sum_probs=173.9
Q ss_pred ccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH--HhhhhcCCCCcEEEEeccc-ccccchhhhh
Q psy8076 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT--MSVIYNMGQDDVWWTASDM-GWVVGHSYIC 330 (737)
Q Consensus 254 ~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~-~~~~g~~~~~ 330 (737)
..++++++|+||||||| .||||+++|+++.....+. ....++++++|++++.+|+ .|+.++.. .
T Consensus 88 ~~~~~~a~i~~TSGTTG------------~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~ 154 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTG------------APKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-K 154 (369)
T ss_dssp SCTTCCCEEEEECC---------------CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-H
T ss_pred CCccccEEEEECCCCCC------------CCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-H
Confidence 47789999999999999 9999999998876665542 2244678899999999999 88888654 5
Q ss_pred hhccccCcEEEEecCCCCCCCChh-----------------------HHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 331 YGPLAAGITSVMYEGKPDRTPDPS-----------------------QYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 331 ~~~L~~G~~~vl~~~~~~~~~~~~-----------------------~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
+.++..|+ +++.. .++|. .+++.|+++++|++.++|+++..|.+....
T Consensus 155 ~~~~~~G~-~v~~~-----~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--- 225 (369)
T 3hgu_A 155 ERALRLGG-MFFSI-----DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--- 225 (369)
T ss_dssp HHHHHTTS-CEECC-----CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH---
T ss_pred HHHHHcCC-EEECc-----cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh---
Confidence 66688998 45443 24666 788899999999999999999999775321
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHH-Hhc-CCcccccccccccccccccccccCCCCCCCCCCccCCC------cCC
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAE-KSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLP------FPG 459 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~-~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p------~~g 459 (737)
...++++||.+++|||++++++.+++. +.| +++++|.||+||+++.+... +..++|+| +++
T Consensus 226 -~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~----------~~~~~G~~~~~~~~~~~ 294 (369)
T 3hgu_A 226 -VLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSL----------LITSESQQVIYDSFSPF 294 (369)
T ss_dssp -HHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC----------CBCTTCSSCEEECCTTT
T ss_pred -hccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecc----------ccccCCCcccccCCCCC
Confidence 223567899999999999999999999 899 89999999999998654321 10247888 677
Q ss_pred CCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcC-CCCccCCCcceEEEEecCCCCCcccccc
Q psy8076 460 YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLY 538 (737)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~ 538 (737)
+. ++ |+|+ +|+++|+|+.|||+|++...
T Consensus 295 ~~-----v~--------------------------------------ivD~~~g~~vp~G~~GEl~vt~l~~-------- 323 (369)
T 3hgu_A 295 IT-----YD--------------------------------------VVDSITAQTVEYGERGNVIVTHLSP-------- 323 (369)
T ss_dssp EE-----EE--------------------------------------EECTTTCSBCCTTCEEEEEEEEEET--------
T ss_pred eE-----EE--------------------------------------EECCCCCcCCCCCCceEEEEEEcCc--------
Confidence 66 66 9997 89999999999999997511
Q ss_pred cChhhhHHhhccCCCCeeecCceEEEecC--c-------eEEEEeecCCeEeeCcE
Q psy8076 539 KAPQRFMKIYFTKFPGYYDTMDAGYYDEN--G-------YIYVTARDDDVINVAGH 585 (737)
Q Consensus 539 ~~~~~~~~~~~~~~~g~~~TGDl~~~~~d--G-------~l~i~GR~dd~Ik~~G~ 585 (737)
..++ -.|+|||+++..+. | .+..++|.|++.||.|.
T Consensus 324 -------~~~l----~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 324 -------WAFY----PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp -------TEEE----EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred -------cccc----ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 0011 13899999988543 2 46778899999999885
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.53 E-value=8.4e-15 Score=127.72 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=73.8
Q ss_pred eecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCC
Q psy8076 574 ARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTN 653 (737)
Q Consensus 574 GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (737)
.|.||+||++|++|+|.|||++|.+||+|.++++++++++.+++.+.++|+..+..... .
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~--------~------------ 60 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDD--------Y------------ 60 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCC--------H------------
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccc--------c------------
Confidence 48999999999999999999999999999999999999998899999999988751000 0
Q ss_pred ccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEE--cCCCCCCCCchhhH
Q psy8076 654 PIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTS--VTGLPRTRSGKTAR 714 (737)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~--v~~lP~t~sGKi~R 714 (737)
.....+.++|++.+++.+. +|..+.+ .++|||| +||++|
T Consensus 61 ------------------~~~~~l~~~i~~~l~~~~g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 61 ------------------GRLQALTREITRQLKDEIL---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHS---SCCEEEEECTTCSCCC----CCC
T ss_pred ------------------chhhhhHHHHHHHHHHHhC---CccceEEEcCCeecCC-CCCcch
Confidence 1123455667777777664 2333444 4689999 799987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.51 E-value=2e-14 Score=125.15 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=75.4
Q ss_pred eecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCC
Q psy8076 574 ARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTN 653 (737)
Q Consensus 574 GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (737)
||.||+|+++|++|+|.|||++|.+||+|.++++++++++.+++.+++++++ ++ ... +
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~------------~~~--~------- 58 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQ------------LFT--D------- 58 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CT------------TCC--C-------
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cC------------ccc--c-------
Confidence 8999999999999999999999999999999999988887778899999998 54 100 0
Q ss_pred ccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcC--CCCCCCCchhhHH
Q psy8076 654 PIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVT--GLPRTRSGKTARK 715 (737)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~--~lP~t~sGKi~R~ 715 (737)
.....+++.+.|++.+++.+.. +..+.+++ +||+| |||++|.
T Consensus 59 ----------------~~~~~~~l~~~i~~~l~~~~~~---~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 59 ----------------DYGRLQALTREITRQLKDEILV---TPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHSS---CCEEEEECTTCSCCC----CCCE
T ss_pred ----------------chhHHHHHHHHHHHHHHHhhCC---ceEEEEECCCCccCC-CCceEEE
Confidence 0001245677788888776653 33677776 99999 9999873
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.51 E-value=1.1e-06 Score=97.61 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=54.2
Q ss_pred ccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec----CceEEEEeecCCeEeeCcEEech
Q psy8076 514 ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE----NGYIYVTARDDDVINVAGHRLST 589 (737)
Q Consensus 514 ~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~----dG~l~i~GR~dd~Ik~~G~rv~~ 589 (737)
.|..|+.+||+|+.. .|+|. |++||+++++. ...+.|+||.+++|++.|++|..
T Consensus 392 eVe~G~~YelViTt~------~GL~R----------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~ 449 (609)
T 4b2g_A 392 HVEVGKEYELVITTY------AGLYR----------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDE 449 (609)
T ss_dssp GCCTTCEEEEEEECT------TSCCS----------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred HcCCCCeEEEehhhh------hhhhh----------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCH
Confidence 467899999999864 24443 99999999974 47899999999999999999999
Q ss_pred HHHHHHHhc
Q psy8076 590 SALEDVVLS 598 (737)
Q Consensus 590 ~eIE~~l~~ 598 (737)
.+||++|.+
T Consensus 450 ~~v~~av~~ 458 (609)
T 4b2g_A 450 AELQKAVDN 458 (609)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999884
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.42 E-value=1.2e-06 Score=97.15 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=54.3
Q ss_pred ccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec----CceEEEEeecCCeEeeCcEEech
Q psy8076 514 ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE----NGYIYVTARDDDVINVAGHRLST 589 (737)
Q Consensus 514 ~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~----dG~l~i~GR~dd~Ik~~G~rv~~ 589 (737)
.|..|+.+||+|+.. .|.|. |++||++++.. ...+.|+||.+++|++.|+++..
T Consensus 380 eVe~G~~YelViTt~------~GL~R----------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~ 437 (581)
T 4eql_A 380 DVKLGCTYEPVVTNF------AGLYR----------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNE 437 (581)
T ss_dssp GCCTTCEEEEEEECS------SSCCS----------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEH
T ss_pred HcCCCceEEEEEeec------cceee----------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCH
Confidence 456789999999974 23332 99999999976 46899999999999999999999
Q ss_pred HHHHHHHhcC
Q psy8076 590 SALEDVVLSH 599 (737)
Q Consensus 590 ~eIE~~l~~~ 599 (737)
.+||++|.+.
T Consensus 438 ~~v~~al~~a 447 (581)
T 4eql_A 438 EDLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.39 E-value=3.7e-06 Score=93.06 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=59.4
Q ss_pred CccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecC----ceEEEEeecCCeEeeCcEEec
Q psy8076 513 SECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDEN----GYIYVTARDDDVINVAGHRLS 588 (737)
Q Consensus 513 ~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~d----G~l~i~GR~dd~Ik~~G~rv~ 588 (737)
..|..|+.+||+|+.. .|.|. |++||++++..- ..+.|+||.++++++.|+++.
T Consensus 386 ~eve~G~~YelviTt~------~GL~R----------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~ 443 (581)
T 4epl_A 386 TQVKIGEEYEVVITNY------AGLYR----------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNT 443 (581)
T ss_dssp GGCCTTCEEEEEEEST------TSCSS----------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBC
T ss_pred HHcCCCCeEEEEEeec------cceee----------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECC
Confidence 3567899999999974 13332 999999999742 579999999999999999999
Q ss_pred hHHHHHHHhc------CC--CcceeEEec
Q psy8076 589 TSALEDVVLS------HP--DVGDTAVIG 609 (737)
Q Consensus 589 ~~eIE~~l~~------~p--~V~~a~vv~ 609 (737)
..+||++|.+ .. .|.|..+..
T Consensus 444 ~~~v~~al~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 444 ERDLQLSVESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhcccCCeEEEEEEec
Confidence 9999999875 22 356666554
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=86.39 E-value=4.4 Score=43.24 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=76.3
Q ss_pred CceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecC--CHHHHHHHHHHHHcCCEEEecCCC
Q psy8076 93 KKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL--IPEAIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 93 d~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~--~~e~vva~lA~~~~G~~~vpl~~~ 167 (737)
+.+|.+... .-+| +.-.+|.+.+...+..+++.+...|+.++|++...++- ....+..+++++..|+..++.++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 677766543 2222 34578999999988888888888999999999999874 345566778899999999887654
Q ss_pred CCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 168 FAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
.++.+...+++.++.+++....
T Consensus 166 -~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 166 -NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp -CHHHHHHHHHHHTCCEEECCHH
T ss_pred -CHHHHHHHHHHHCCCEEEECHH
Confidence 6788999999999999887653
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=85.90 E-value=6.4 Score=41.99 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=75.3
Q ss_pred CCceEEEE-eCCCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCC--HHHHHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIH-DSPVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI--PEAIVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~-~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~--~e~vva~lA~~~~G~~~vpl~~ 166 (737)
++.+|.+. -+.-+| +.-.+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++++..|+..+++++
T Consensus 91 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 170 (443)
T 2y4o_A 91 REQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG 170 (443)
T ss_dssp GGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS
T ss_pred hhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC
Confidence 56666443 332223 245789999988888888888888999999999998853 4445667888999999988866
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 167 GFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
. .++++...+++.++.+++....
T Consensus 171 ~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 171 G-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp C-CHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CHHHHHHHHHHhCCcEEEECHH
Confidence 4 7889999999999999987653
No 44
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=85.85 E-value=4.8 Score=42.95 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=75.7
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecC--CHHHHHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL--IPEAIVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~--~~e~vva~lA~~~~G~~~vpl~~ 166 (737)
++.+|.+... .-+| +.-.+|.+.+...+..+++.+...|+.++|++...++. ....+..+++++..|+..+++++
T Consensus 89 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 168 (437)
T 2y27_A 89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG 168 (437)
T ss_dssp GGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS
T ss_pred hhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC
Confidence 5666655433 2222 34578999998888888888888899999999999885 34445567888999999998765
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 167 GFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
..++++...+++.++.+++....
T Consensus 169 -~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 169 -GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp -CCHHHHHHHHHHHCCSEEEECHH
T ss_pred -CCHHHHHHHHHHhCCCEEEECHH
Confidence 47889999999999999987653
No 45
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=65.33 E-value=19 Score=37.07 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecC--CHHHHHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL--IPEAIVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~--~~e~vva~lA~~~~G~~~vpl~~ 166 (737)
++.+|.+... .-+| +...+|.+.+...+..+++.+...|+.++|++..++|- ..--+...++++..|+.+++.+
T Consensus 90 ~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~- 168 (369)
T 3hgu_A 90 ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID- 168 (369)
T ss_dssp TTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC-
T ss_pred ccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc-
Confidence 5665655432 2222 34577999998888877777778899999999999886 2233344555588999655543
Q ss_pred CCCHH-----------------------HHHHHHhhcCCcEEEEcCC
Q psy8076 167 GFAAR-----------------------ELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 167 ~~~~~-----------------------~l~~~l~~~~~~~vl~~~~ 190 (737)
+.+. ++...+++.++.+++....
T Consensus 169 -~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps 214 (369)
T 3hgu_A 169 -IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPP 214 (369)
T ss_dssp -CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHH
T ss_pred -CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHH
Confidence 3444 6666888999988887653
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=63.60 E-value=72 Score=34.21 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=69.4
Q ss_pred CCceEEEEeCC-CCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCH-HHHHHHHHHHHcCCEEEecCCC
Q psy8076 92 AKKVALIHDSP-VTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP-EAIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 92 pd~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~-e~vva~lA~~~~G~~~vpl~~~ 167 (737)
++.+|++.... -+| +.-.+|.+.+...+..+.. ..++.++|++...+|-.- --+..+++++..|+..+..+ .
T Consensus 162 ~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~ 237 (501)
T 3ipl_A 162 LDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-K 237 (501)
T ss_dssp TTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred CCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-C
Confidence 67888765442 222 3457899988776665543 458899999999888653 23344678889999988876 4
Q ss_pred CCHHHHHHHHhhcCCcEEEEcC
Q psy8076 168 FAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
+.++.+...+++.++.++....
T Consensus 238 ~~~~~~~~~i~~~~~t~~~~~P 259 (501)
T 3ipl_A 238 FNAEQILTMIKNERITHISLVP 259 (501)
T ss_dssp CCHHHHHHHHHHSCCCEEEECH
T ss_pred CCHHHHHHHHHHcCCcEEEchH
Confidence 7889999999999999998865
No 47
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=58.77 E-value=72 Score=34.75 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=69.0
Q ss_pred CCceEEEEeCC-CC--CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHH--HH-HHHHHHHcCCEEEecC
Q psy8076 92 AKKVALIHDSP-VT--KSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA--IV-SMLATVRLGAIHSVVF 165 (737)
Q Consensus 92 pd~~Al~~~~~-~~--~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vv-a~lA~~~~G~~~vpl~ 165 (737)
++.+|++.... -+ -+.-.+|.+.+...+..++.. .++.++|++...+|.+..+ .. .+++.+..|+..+..+
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 67778765432 12 234588999987776665543 5889999999998865433 32 4788899999988775
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 166 GGFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
...+..+...+++.++.++.....
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~ 290 (544)
T 3o83_A 267 -NPEPLNCFSIIQRHQVNMASLVPS 290 (544)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHH
T ss_pred -CCCHHHHHHHHHHHCCCEEEechH
Confidence 467888889999999999887653
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=58.18 E-value=40 Score=36.91 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=68.3
Q ss_pred CceEEEEeCC-CCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHH--HHHHHHHHHHcCCEEEecCCC
Q psy8076 93 KKVALIHDSP-VTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE--AIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 93 d~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e--~vva~lA~~~~G~~~vpl~~~ 167 (737)
+.+|++.... -+| +.-.+|.+.+...+......+...++.++|++...+|-+-. +...+++.+ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 7778776532 122 34578999887766655444333578899999988886533 334467777 999988875 5
Q ss_pred CCHHHHHHHHhhcCCcEEEEcC
Q psy8076 168 FAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
+.++.+...+++.++.+++...
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P 291 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVP 291 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECH
T ss_pred CCHHHHHHHHHHcCCcEEEecH
Confidence 7889999999999999988765
No 49
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=56.99 E-value=91 Score=33.84 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=69.2
Q ss_pred CCceEEEEeCC-CC--CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCH--HHHH-HHHHHHHcCCEEEecC
Q psy8076 92 AKKVALIHDSP-VT--KSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP--EAIV-SMLATVRLGAIHSVVF 165 (737)
Q Consensus 92 pd~~Al~~~~~-~~--~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~--e~vv-a~lA~~~~G~~~vpl~ 165 (737)
|+.+|++.... -+ -+.-.+|.+.+...+..... ..++.++|++...+|-+- .+.. .+++.+..|+..+..+
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 257 (539)
T 1mdb_A 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257 (539)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC
Confidence 67777765432 12 23468899988776655443 347889999999888653 3333 5788999999988775
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 166 GGFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
...++.+...+++.++.++.....
T Consensus 258 -~~~~~~~~~~i~~~~~t~~~~~P~ 281 (539)
T 1mdb_A 258 -SPSPDDAFPLIEREKVTITALVPP 281 (539)
T ss_dssp -SSSHHHHHHHHHHHTCSEEEECHH
T ss_pred -CCCHHHHHHHHHHcCCeEEEccHH
Confidence 467889999999999999887653
No 50
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=53.98 E-value=4.2 Score=43.26 Aligned_cols=44 Identities=5% Similarity=0.028 Sum_probs=40.2
Q ss_pred cceeeeeeecccccccccccCC-hhHHHHHHHHHhhC---hhhHHHHH
Q psy8076 3 QFKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEA---PESFWTDV 46 (737)
Q Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~---p~~~~~~~ 46 (737)
..++.+.++|++++|+++++++ +++|..+++.++++ |+..++++
T Consensus 371 ~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~l 418 (436)
T 1l5a_A 371 QHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARL 418 (436)
T ss_dssp TSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred CCcEEEEEEeChhhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHH
Confidence 3468899999999999999999 66899999999999 99999888
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=51.06 E-value=93 Score=33.56 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=66.2
Q ss_pred CCceEEEEeC-CCC--CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHH--HHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIHDS-PVT--KSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA--IVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~~~-~~~--~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~G~~~vpl~~ 166 (737)
|+.+|++... .-+ -+.-.+|.+.+...+..++.. .++.++|++...+|-.-.+ ...+++++ .|+..+..+
T Consensus 169 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~- 243 (517)
T 3r44_A 169 GDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP- 243 (517)
T ss_dssp TTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS-
T ss_pred CCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC-
Confidence 5677765443 222 234578999887776665544 4889999999998866433 33355555 898888774
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 167 GFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
.+.+.++...+++.++.++.....
T Consensus 244 ~~~~~~~~~~i~~~~~t~~~~~P~ 267 (517)
T 3r44_A 244 QFDATKVWSLIVEERVCIGGAVPA 267 (517)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHH
T ss_pred CCCHHHHHHHHHHhCCeEEEeHHH
Confidence 578899999999999999887653
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=47.30 E-value=86 Score=34.14 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=68.4
Q ss_pred CCceEEEEeC-CCC--CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCH-HHHHHHHHHHHcCCEEEecCCC
Q psy8076 92 AKKVALIHDS-PVT--KSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP-EAIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 92 pd~~Al~~~~-~~~--~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~-e~vva~lA~~~~G~~~vpl~~~ 167 (737)
++.+|++... .-+ -+.-.+|.+.+...+......+...++.+++++...+|-+- --+..+++.+..|+..+.+. .
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~ 267 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R 267 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence 4567766543 112 23457899888766555444433357889999998888653 22445677889999988875 5
Q ss_pred CCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 168 FAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
+.++.+...+++.++.+++....
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~ 290 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPT 290 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCeEEEeCcH
Confidence 78899999999999999988653
No 53
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=44.65 E-value=1.5e+02 Score=32.62 Aligned_cols=95 Identities=16% Similarity=0.032 Sum_probs=68.3
Q ss_pred CCceEEEEeC-CCC--CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCC--HHHHH-HHHHHHHcCCEEEecC
Q psy8076 92 AKKVALIHDS-PVT--KSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI--PEAIV-SMLATVRLGAIHSVVF 165 (737)
Q Consensus 92 pd~~Al~~~~-~~~--~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~--~e~vv-a~lA~~~~G~~~vpl~ 165 (737)
|+.+|++... .-+ -+.-.+|.+.+...+...... .++.++|++...+|-+ ..+.+ .+++++..|+..+..+
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 5777766543 222 234688999887666655443 4788999999998854 34433 4788889999988775
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 166 GGFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
. .....+...+++.++.++.....
T Consensus 260 ~-~~~~~~~~~i~~~~~t~~~~~P~ 283 (617)
T 3rg2_A 260 D-PSATLCFPLIEKHQVNVTALVPP 283 (617)
T ss_dssp S-CCHHHHHHHHHHTTCCEEEECHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEcchH
Confidence 4 57788888999999999887653
No 54
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=44.26 E-value=5.8 Score=42.99 Aligned_cols=42 Identities=14% Similarity=0.047 Sum_probs=30.3
Q ss_pred ceeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHH
Q psy8076 4 FKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDV 46 (737)
Q Consensus 4 ~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~ 46 (737)
.++.+.++|++++| ++++++ +++|..+++.++++|+..++++
T Consensus 426 ~~l~~~~~y~~~l~-~~~i~~l~~~~~~~L~~~~~~p~~~l~~l 468 (493)
T 4hvm_A 426 EDMVIVLDQRRTHP-AGGGSALLDGLDAAMAQAVADPSAPLPHS 468 (493)
T ss_dssp TEEEEEEEECC--------CHHHHHHHHHHHHHHHCTTSBCCC-
T ss_pred CeEEEEEEEccccC-HHHHHHHHHHHHHHHHHHHhCCCCccccC
Confidence 46889999999999 999999 6789999999999999977766
No 55
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=43.01 E-value=1e+02 Score=31.47 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCceEEEEe-CCCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCH-HHHHHHHHHHHcCCEEEecCCC
Q psy8076 92 AKKVALIHD-SPVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP-EAIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 92 pd~~Al~~~-~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~-e~vva~lA~~~~G~~~vpl~~~ 167 (737)
.|.+|++.. +.-+| +.-.+|++.|...+..++. ..++.++|++...+|-+- --+..++..+..|+..+..++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 556665532 22233 3458999998776655544 458899999999988653 3344556667778887777654
Q ss_pred CCHHHHHHHHhhcCCcEEEEcC
Q psy8076 168 FAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
.. ....+++.++.++....
T Consensus 113 ~~---~~~~i~~~~~t~~~~~P 131 (358)
T 4gs5_A 113 AN---PLAGLDHADFDFVAMVP 131 (358)
T ss_dssp SC---TTTTCSSCCCSEEEECH
T ss_pred cc---HHHHHHHhCCeEEEcCh
Confidence 33 23456677777776643
No 56
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=42.78 E-value=2.3e+02 Score=28.38 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=47.0
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEec--CC--CCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHH
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVV--FG--GFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl--~~--~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~ 206 (737)
+++||.|.+.-+....+. .++...|+.++++ ++ ....+.++..++..++++|+........+...+. ..+.+
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~-~~l~~ 181 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDA-ADMEA 181 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCH-HHHHH
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCH-HHHHH
Confidence 578899888776554332 2344567765554 43 3467889998887678888776544444444332 33555
Q ss_pred HHHhcC
Q psy8076 207 ALEISS 212 (737)
Q Consensus 207 ~~~~~~ 212 (737)
..+.+.
T Consensus 182 i~~~~~ 187 (367)
T 3euc_A 182 IVRAAQ 187 (367)
T ss_dssp HHHHTB
T ss_pred HHHhhh
Confidence 555443
No 57
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=41.33 E-value=80 Score=34.66 Aligned_cols=95 Identities=9% Similarity=0.091 Sum_probs=69.1
Q ss_pred CCceEEEEeCC-CC--CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHH--HHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIHDSP-VT--KSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA--IVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~~~~-~~--~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~G~~~vpl~~ 166 (737)
|+.+|++.... -+ -+.-.+|.+.+...+..++. ..++.++|++...+|-+-.+ ...+++.+..|+..+.+.+
T Consensus 166 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 242 (590)
T 3kxw_A 166 SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSP 242 (590)
T ss_dssp TTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCH
T ss_pred CCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCH
Confidence 67788765432 22 23468899999877665544 45889999999999877544 3347889999999888765
Q ss_pred CC---CHHHHHHHHhhcCCcEEEEcC
Q psy8076 167 GF---AARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 167 ~~---~~~~l~~~l~~~~~~~vl~~~ 189 (737)
.. .+..+...+++.++.++.+..
T Consensus 243 ~~~~~~~~~~~~~i~~~~~t~~~~~p 268 (590)
T 3kxw_A 243 FSFLQNPLSWLKHITKYKATISGSPN 268 (590)
T ss_dssp HHHHHCTHHHHHHHHHHTCSEEEECT
T ss_pred HHHHHCHHHHHHHHHHhCCeeecCCh
Confidence 32 567788889999999887654
No 58
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=40.55 E-value=69 Score=34.49 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=67.8
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHH-HHHHHHHHHHcCCEEEecCCC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE-AIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~G~~~vpl~~~ 167 (737)
++.+|++... .-+| +.-.+|.+.+...+.... ...++.++|++...+|-+.. .+..+++.+..|+..+.+++.
T Consensus 143 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 219 (512)
T 3fce_A 143 GDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKD 219 (512)
T ss_dssp TTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHH
T ss_pred CCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHH
Confidence 6677766543 2122 245789988876655444 34588999999999886532 234578889999999888753
Q ss_pred --CCHHHHHHHHhhcCCcEEEEcC
Q psy8076 168 --FAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 168 --~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
..+..+...+++.++.++....
T Consensus 220 ~~~~~~~~~~~i~~~~~t~~~~~P 243 (512)
T 3fce_A 220 MIARPKDLFASLEQSDIQVWTSTP 243 (512)
T ss_dssp HHHSHHHHHHHHHHHCCCEEEECH
T ss_pred HhhCHHHHHHHHHHcCCcEEEecH
Confidence 5678899999999999888764
No 59
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=39.30 E-value=1.2e+02 Score=32.87 Aligned_cols=69 Identities=6% Similarity=-0.018 Sum_probs=56.2
Q ss_pred hcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHH
Q psy8076 306 YNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR 380 (737)
Q Consensus 306 ~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~ 380 (737)
.++.++|++...++-.... +..+++.+..|+..+.++. ....+++...++.-+++++++.+.....+..
T Consensus 72 ~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~----~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 72 KGVRKGEHVGVCIPNSIDY--VMTIYALWRVAATPVPINP----MYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECCT----TCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEEccCC----CCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 5889999999888876544 3447999999999998875 3678999999999999999998877666544
No 60
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=38.90 E-value=1.1e+02 Score=32.77 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=68.2
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHH-HHHHHHHHHHcCCEEEecCCC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE-AIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~G~~~vpl~~~ 167 (737)
++.+|++... .-+| +.-.+|.+.+...+..++. ..++.++|++...+|-+.. .+..+++++..|+..+.++..
T Consensus 142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 218 (511)
T 3e7w_A 142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKD 218 (511)
T ss_dssp TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHH
T ss_pred CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChh
Confidence 5677766433 2222 3457899888766655443 4678899999999886632 344578889999998887643
Q ss_pred --CCHHHHHHHHhhcCCcEEEEcC
Q psy8076 168 --FAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 168 --~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
..+..+...+++.++.+++...
T Consensus 219 ~~~~~~~~~~~i~~~~~t~~~~~P 242 (511)
T 3e7w_A 219 AVNKPKVLFEELKKSGLNVWTSTP 242 (511)
T ss_dssp HHHSHHHHHHHHHHHCCSEEEECH
T ss_pred hhcCHHHHHHHHHHcCCcEEEecH
Confidence 5678889999999999888764
No 61
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=37.48 E-value=1.6e+02 Score=29.91 Aligned_cols=64 Identities=13% Similarity=0.015 Sum_probs=44.5
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC-------CCHHHHHHHHhhcCCcEEEEcCCcccCCcc
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG-------FAARELCARLEHAKPKVIIAASCGVEPNKV 197 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~-------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~ 197 (737)
+++||.|.+.-+....+. .++...|+.+++++.. ...+.++..+++.++++|+........+..
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~ 176 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYA 176 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBC
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcc
Confidence 468999888777665533 3456788887777643 678999999987778887766544444444
No 62
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=36.99 E-value=1.2e+02 Score=32.57 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=66.9
Q ss_pred CCceEEEEeCC-CCC--ceeEEcHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEecCCHHH--HHHHHHHHHcCCEEEec
Q psy8076 92 AKKVALIHDSP-VTK--SIRKVTYAELQEQVSLLAGSLAAIGV--SAGDRVLIYMPLIPEA--IVSMLATVRLGAIHSVV 164 (737)
Q Consensus 92 pd~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv--~~Gd~V~i~~~~~~e~--vva~lA~~~~G~~~vpl 164 (737)
|+.+|++.... -+| +.-.+|.+.+...+..++. ..++ .++|++...+|-.-.+ ...+++.+..|+..+..
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 228 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC
Confidence 67788765432 122 3457888888766555433 3477 7889998888865433 34578889999998887
Q ss_pred CCCCCHHHHHHHHhhcCCcEEEEcC
Q psy8076 165 FGGFAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
+. +.+..+...+++.++.+++...
T Consensus 229 ~~-~~~~~~~~~i~~~~~t~~~~~P 252 (504)
T 1t5h_X 229 EE-FRPVDALQLVQQEQVTSLFATP 252 (504)
T ss_dssp SS-CCHHHHHHHHHHHTCCEEECCH
T ss_pred CC-CCHHHHHHHHHHhCCeEEEeCh
Confidence 64 6788899999999999988764
No 63
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=36.47 E-value=1.8e+02 Score=31.77 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=65.5
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHH--HHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA--IVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~G~~~vpl~~ 166 (737)
++.+|++... .-+| +.-.+|.+ +....... .....++.++|++...+|-+..+ ...+++.+..|+..+....
T Consensus 205 ~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 281 (570)
T 3c5e_A 205 SQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLL 281 (570)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECC
T ss_pred CCCcEEEEECCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecC
Confidence 6777776543 2222 24578888 43311111 11446889999999988876433 3357888899998887764
Q ss_pred -CCCHHHHHHHHhhcCCcEEEEcC
Q psy8076 167 -GFAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 167 -~~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
.+.+..+...+++.++.+++...
T Consensus 282 ~~~~~~~~~~~i~~~~~t~~~~~P 305 (570)
T 3c5e_A 282 PKFDPLVILKTLSSYPIKSMMGAP 305 (570)
T ss_dssp SSCCHHHHHHHHHHSCCCEEEECH
T ss_pred CCCCHHHHHHHHHHhCCeEEeccH
Confidence 77899999999999999998764
No 64
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=35.66 E-value=1.8e+02 Score=30.48 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=45.9
Q ss_pred CCCCCEEEEEecCCHHHHHHHH-HHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchH
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSML-ATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~l-A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~ 202 (737)
+++||.|.+.-+......-.+- .+.+.|+.++.++.+ ..+.++..++. +.++|+........+...++..
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~ 188 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLETISNPQLQVADLEA 188 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHH
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHH
Confidence 6789998776665554443332 556778888888766 66777777754 6677777665555555555443
No 65
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=34.04 E-value=1.9e+02 Score=30.97 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=65.5
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCH--HHHHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP--EAIVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~--e~vva~lA~~~~G~~~vpl~~ 166 (737)
++.+|++... .-+| +.-.+|.+.+...+..++..+ ++.++|++...+|..- .++..+++.+..|+..+...
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~- 229 (505)
T 3nyq_A 154 DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG- 229 (505)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-
T ss_pred CCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-
Confidence 6677765443 2222 345889999887777665544 7889999988887542 33446789999999988774
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcC
Q psy8076 167 GFAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
.+.++.+...+ +.++.+++...
T Consensus 230 ~~~~~~~~~~i-~~~~t~~~~~P 251 (505)
T 3nyq_A 230 RFSTEGAAREL-NDGATMLFGVP 251 (505)
T ss_dssp SCCHHHHHHHH-TTTCCEEEECH
T ss_pred CCChHHHHHHH-hhCCeEEEehH
Confidence 56677777777 66888887764
No 66
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=33.75 E-value=3.2e+02 Score=27.31 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=47.9
Q ss_pred CCC-CEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC----CCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHH
Q psy8076 132 SAG-DRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG----FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206 (737)
Q Consensus 132 ~~G-d~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~ 206 (737)
++| |.|.+.-|.-..+. .++...|+.+++++.. ...+.+...++ ++++|+........+...+ .+.+.+
T Consensus 97 ~~g~d~Vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~-~~~l~~ 170 (356)
T 1fg7_A 97 EPGKDAILYCPPTYGMYS---VSAETIGVECRTVPTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLIN-PQDFRT 170 (356)
T ss_dssp CTTTCEEEECSSSCTHHH---HHHHHHTCEEEECCCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCC-HHHHHH
T ss_pred CCCCCEEEEeCCChHHHH---HHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCC-HHHHHH
Confidence 578 99888776555544 3345578877666532 44667766665 6677776654444455444 344555
Q ss_pred HHHhcCCCCCeEEEEec
Q psy8076 207 ALEISSCKPDYCIIFQR 223 (737)
Q Consensus 207 ~~~~~~~~~~~viv~~~ 223 (737)
..+.+. ....++++.
T Consensus 171 l~~~~~--~~~~li~De 185 (356)
T 1fg7_A 171 LLELTR--GKAIVVADE 185 (356)
T ss_dssp HHHHHT--TTCEEEEEC
T ss_pred HHHhCC--CCCEEEEEc
Confidence 554443 223444443
No 67
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=33.11 E-value=1.4e+02 Score=30.22 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=58.7
Q ss_pred CCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCH
Q psy8076 92 AKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIG-VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170 (737)
Q Consensus 92 pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~G-v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~ 170 (737)
+.++.+..++-+. +=+++.--. ...+ ..+.+.| +++|+.|.+....+-.-....++|.+.|.-++.+-|...+
T Consensus 34 g~~i~~K~E~~~p----tGSfK~R~a-~~~i-~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~ 107 (334)
T 3tbh_A 34 KAKVVLKMECENP----MASVKDRLG-FAIY-DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMS 107 (334)
T ss_dssp SSEEEEEEGGGST----TSBTHHHHH-HHHH-HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSC
T ss_pred CCEEEEEeCCCCC----ccCcHHHHH-HHHH-HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 4567776665221 124544311 1222 3344556 4888887566666777777778888889877666555444
Q ss_pred HHHHHHHhhcCCcEEEEcCC
Q psy8076 171 RELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 171 ~~l~~~l~~~~~~~vl~~~~ 190 (737)
.....+++..+++++++...
T Consensus 108 ~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 108 LERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHHCCCEEEEECCC
Confidence 55567789999999999753
No 68
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=33.11 E-value=3.7e+02 Score=26.63 Aligned_cols=86 Identities=7% Similarity=0.074 Sum_probs=49.7
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC----CCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHH
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG----FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~ 206 (737)
+++||.|.+..+....+. .++...|+.++.++.+ ...+.+...++. ++++|+........+...+. +.+.+
T Consensus 105 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~-~~l~~ 179 (363)
T 3ffh_A 105 LDTTTNTVMATPTFVQYR---QNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIEL-ADIQA 179 (363)
T ss_dssp CSTTCEEEEEESSCHHHH---HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCH-HHHHH
T ss_pred ccCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCH-HHHHH
Confidence 468999988887665533 3345567766555432 356788877754 56777765544444554443 34555
Q ss_pred HHHhcCCCCCeEEEEec
Q psy8076 207 ALEISSCKPDYCIIFQR 223 (737)
Q Consensus 207 ~~~~~~~~~~~viv~~~ 223 (737)
..+... . ...++++.
T Consensus 180 l~~~~~-~-~~~li~De 194 (363)
T 3ffh_A 180 FLDRVP-S-DVLVVLDE 194 (363)
T ss_dssp HHTTSC-T-TSEEEEEC
T ss_pred HHHhCC-C-CcEEEEeC
Confidence 555443 2 44455544
No 69
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=32.93 E-value=1.6e+02 Score=31.94 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=66.7
Q ss_pred CCceEEEE-eCCCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHH-HHHHHHHHHcCCEEEecCCC
Q psy8076 92 AKKVALIH-DSPVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA-IVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 92 pd~~Al~~-~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~G~~~vpl~~~ 167 (737)
++.+|++. -+.-+| +.-.+|.+.+...+.... .....++.++|++...+|-.-.. +..+++++..|+..+..++.
T Consensus 175 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~ 253 (541)
T 1v25_A 175 ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR 253 (541)
T ss_dssp TTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTC
T ss_pred CCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCC
Confidence 56777554 332222 345788888754433210 11234788999999888865322 23567788899999988777
Q ss_pred CCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 168 FAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
+.++.+...+++.++.++.....
T Consensus 254 ~~~~~~~~~i~~~~~t~~~~~P~ 276 (541)
T 1v25_A 254 LDPASLVELFDGEGVTFTAGVPT 276 (541)
T ss_dssp CSHHHHHHHHHHTTCCEEEECHH
T ss_pred CCHHHHHHHHHhcCeeEEecchH
Confidence 78999999999999999887653
No 70
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=32.01 E-value=2.4e+02 Score=28.23 Aligned_cols=70 Identities=9% Similarity=-0.053 Sum_probs=46.3
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC----CCHHHHHHHHhhcCCcEEEEcCCcccCCccccch
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG----FAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~ 201 (737)
.++||.|.+..+....+.-...++...|+.++.++.+ ...+.++..++. ++++|+........+...+..
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~ 159 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVE 159 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHH
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHH
Confidence 3688998887776666555555556678877766532 467888887764 677777765555556666643
No 71
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=32.00 E-value=1.9e+02 Score=29.17 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=44.8
Q ss_pred HHcCCCCCCEEEEEecCCHHHHHHHHH-HHHcCCEEEecCCC------CCHHHHHHHHhhcCCcEEEEcCCcccCCcccc
Q psy8076 127 AAIGVSAGDRVLIYMPLIPEAIVSMLA-TVRLGAIHSVVFGG------FAARELCARLEHAKPKVIIAASCGVEPNKVVR 199 (737)
Q Consensus 127 ~~~Gv~~Gd~V~i~~~~~~e~vva~lA-~~~~G~~~vpl~~~------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~ 199 (737)
....+++||.|.+..+......-.+.. +...|+.++.++.. ...+.++..++. ++++|+........+...+
T Consensus 94 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~ 172 (390)
T 1elu_A 94 WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVLP 172 (390)
T ss_dssp HHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBCC
T ss_pred hCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCceecC
Confidence 333467899999888877766654433 34568776665532 345666666643 5677777665555566656
Q ss_pred c
Q psy8076 200 Y 200 (737)
Q Consensus 200 ~ 200 (737)
+
T Consensus 173 ~ 173 (390)
T 1elu_A 173 L 173 (390)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=31.96 E-value=1.5e+02 Score=29.64 Aligned_cols=68 Identities=10% Similarity=0.033 Sum_probs=44.5
Q ss_pred CCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC----CCHHHHHHHHhhcCCcEEEEcCCcccCCccccc
Q psy8076 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG----FAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200 (737)
Q Consensus 132 ~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~ 200 (737)
++||.|.+..+..+.+.-++..+-+.|+.++.++.+ ...+.++..++. +.++++........+...++
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~ 157 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPV 157 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCH
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCCH
Confidence 578999888777776666555555678776665533 367888887753 55677766655455555553
No 73
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=31.45 E-value=2.2e+02 Score=26.53 Aligned_cols=90 Identities=12% Similarity=0.004 Sum_probs=50.8
Q ss_pred EEEEeccc--ccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEee------cHHH--HHHHHHcC
Q psy8076 313 VWWTASDM--GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFT------APTA--LRVIRRED 382 (737)
Q Consensus 313 ~~l~~~~~--~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~------~P~~--~~~l~~~~ 382 (737)
+++..++. .|+.|....-..--..|-.++.... ...++.+.+.+.++++.++.+ ++++ ++.+.+..
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~----~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV----DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS----SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC----CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 44444443 4777754422333345666665543 357899999999999998777 2222 22222221
Q ss_pred CCCccccCCCC-CCccEEEeecCCCCHHHHHH
Q psy8076 383 KDSTLGAQYST-DSLRYLFVAGEHCDHETKNW 413 (737)
Q Consensus 383 ~~~~~~~~~~l-~~Lr~i~~gGe~l~~~~~~~ 413 (737)
.. ..+ ..++ +++||.+++++..+.
T Consensus 170 ~~------~~~~~~v~-v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 170 NE------EKLRDSVK-CMFGGAPVSDKWIEE 194 (215)
T ss_dssp HH------TTCGGGSE-EEEESSSCCHHHHHH
T ss_pred HH------cCCCCCCE-EEEECCCCCHHHHHH
Confidence 11 011 1233 788999999775443
No 74
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=29.74 E-value=4.1e+02 Score=26.12 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=52.7
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC----CCHHHHHHHHhh-cCCcEEEEcCCcccCCccccchHHHH
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG----FAARELCARLEH-AKPKVIIAASCGVEPNKVVRYKTILN 205 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~-~~~~~vl~~~~~~~~~~~~~~~~~~~ 205 (737)
+++||.|.+.-+....+. -++...|+.+++++.+ ...+.++..+++ .++++|+........+...+.. .+.
T Consensus 89 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~-~l~ 164 (354)
T 3ly1_A 89 ASLEAQLVIPELTYGDGE---HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPAD-VIE 164 (354)
T ss_dssp CCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHH-HHH
T ss_pred hCCCCeEEECCCCchHHH---HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHH-HHH
Confidence 468999988877665543 3455678876666433 367888888876 5788887765544445544433 345
Q ss_pred HHHHhcCCCCCeEEEEec
Q psy8076 206 EALEISSCKPDYCIIFQR 223 (737)
Q Consensus 206 ~~~~~~~~~~~~viv~~~ 223 (737)
+..+.+ .....++++.
T Consensus 165 ~l~~~~--~~~~~li~De 180 (354)
T 3ly1_A 165 PWIASK--PANTMFIVDE 180 (354)
T ss_dssp HHHHTC--CTTEEEEEEC
T ss_pred HHHHhC--CCCeEEEEec
Confidence 554443 2233444443
No 75
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=29.42 E-value=3.7e+02 Score=28.52 Aligned_cols=95 Identities=19% Similarity=0.148 Sum_probs=62.7
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHH-HHHHHHHHHcCCEEEecCCC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA-IVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~G~~~vpl~~~ 167 (737)
++.+|++... .-+| +.-.+|.+.+...+..++. ..++.++|++...+|-.-.+ +..++.++..|+..+.+. .
T Consensus 159 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~-~ 234 (509)
T 3ivr_A 159 AADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-K 234 (509)
T ss_dssp TTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred ccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-c
Confidence 6677765432 2222 2357899988776665544 45889999999998865332 233344344444444444 6
Q ss_pred CCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 168 FAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
+.++.+...+++.++.++.....
T Consensus 235 ~~~~~~~~~i~~~~~t~~~~~p~ 257 (509)
T 3ivr_A 235 FDPAQAARDIEAHKVTVMAEFAP 257 (509)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETT
T ss_pred cCHHHHHHHHHHHCCcEEEecHH
Confidence 78899999999999999987664
No 76
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=29.34 E-value=1.6e+02 Score=29.74 Aligned_cols=68 Identities=9% Similarity=-0.019 Sum_probs=40.3
Q ss_pred CCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCC--C--CCHHHHHHHHhhcCCcEEEEcCCcccCCccccc
Q psy8076 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG--G--FAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200 (737)
Q Consensus 132 ~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~--~--~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~ 200 (737)
++||.|.+.-+....+.-+...+.+.|+.++.++. + ...+.++..++. ++++|+........+...++
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l 157 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPV 157 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCH
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEeccCCCccccCCH
Confidence 47888887766665544433333346776655543 2 457788777754 56777766544444555553
No 77
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=28.74 E-value=3.3e+02 Score=27.04 Aligned_cols=67 Identities=9% Similarity=0.016 Sum_probs=45.4
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecC--CC----CCHHHHHHHHhh----cCCcEEEEcCCcccCCccccc
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVF--GG----FAARELCARLEH----AKPKVIIAASCGVEPNKVVRY 200 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~--~~----~~~~~l~~~l~~----~~~~~vl~~~~~~~~~~~~~~ 200 (737)
+++||.|.+.-+.......+ +...|+.++.++ .+ ...+.++..+++ -++++++........+...+.
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~ 166 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDV 166 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCH
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCH
Confidence 46899998887766655444 567788777665 22 367889888875 366777776655555665554
No 78
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=28.02 E-value=4.2e+02 Score=26.72 Aligned_cols=66 Identities=14% Similarity=-0.022 Sum_probs=45.3
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhc---CCcEEEEcCCcccCCccccc
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHA---KPKVIIAASCGVEPNKVVRY 200 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~---~~~~vl~~~~~~~~~~~~~~ 200 (737)
+++||.|.+..+....+. .++...|+.+++++. ...+.++..++.. ++++|++.......+...++
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~ 192 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNL 192 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCH
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCH
Confidence 568999888877666553 345567888887764 5678888888775 67788776655444555443
No 79
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=28.01 E-value=1.3e+02 Score=33.69 Aligned_cols=81 Identities=7% Similarity=-0.086 Sum_probs=59.4
Q ss_pred eeccCchhHHHH---HHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhc
Q psy8076 287 ILRPVGGHIATL---AWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNH 363 (737)
Q Consensus 287 V~~th~~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~ 363 (737)
..+|.+.+.... +..+....++.++|++..+++..... +..+++++..|+..+.+.. ...++++...|+.-
T Consensus 112 ~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vpl~~----~~~~~~l~~~l~~~ 185 (663)
T 1ry2_A 112 YSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSVVFA----GFSSNSLRDRINDG 185 (663)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEECCT----TSCHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEeeCC----CCCHHHHHHHHHhc
Confidence 346665543333 22233246889999999999877654 3447999999999888775 36789999999999
Q ss_pred CCcEEeecHH
Q psy8076 364 KVNGLFTAPT 373 (737)
Q Consensus 364 ~vt~l~~~P~ 373 (737)
++.++++...
T Consensus 186 ~~~~li~~~~ 195 (663)
T 1ry2_A 186 DSKVVITTDE 195 (663)
T ss_dssp TCSEEEEESB
T ss_pred CCeEEEEccc
Confidence 9999988654
No 80
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=27.63 E-value=3.5e+02 Score=27.19 Aligned_cols=70 Identities=11% Similarity=-0.020 Sum_probs=41.8
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEE--ecCCC--CCHHHHHHHHhh-cCCcEEEEcCCcccCCccccch
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS--VVFGG--FAARELCARLEH-AKPKVIIAASCGVEPNKVVRYK 201 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~v--pl~~~--~~~~~l~~~l~~-~~~~~vl~~~~~~~~~~~~~~~ 201 (737)
+++||.|.+.-+...... ..-.+.+.|+.++ +++++ ...+.++..+++ .++++|+........+...++.
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~ 154 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPID 154 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHH
Confidence 568998888766544332 1112234576554 44432 568899988864 3677887766554555555543
No 81
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=27.52 E-value=1.3e+02 Score=32.91 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=66.0
Q ss_pred cCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHH---HHHHhhhhcCCCCcEEEEecccccccchhhhhh
Q psy8076 255 EANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL---AWTMSVIYNMGQDDVWWTASDMGWVVGHSYICY 331 (737)
Q Consensus 255 ~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~ 331 (737)
.|+.+|++.... .| ....+|.+.+.... +..+. ..+++++|++...++-.... +..++
T Consensus 69 ~pd~~Al~~~~~--~g--------------~~~~~Ty~eL~~~~~~~A~~L~-~~Gv~~Gd~V~l~~~~~~e~--~~~~l 129 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--------------NEKIFTFKDLKYYSDKAANFFV-KHGIGKGDYVMLTLKSRYDF--WYCML 129 (580)
T ss_dssp CTTCEEEEEEES--SS--------------CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECTTCTHH--HHHHH
T ss_pred CCCCEEEEEEcC--CC--------------CEeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHH--HHHHH
Confidence 567888776532 23 23445654433222 22222 36889999999988876543 44478
Q ss_pred hccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecH
Q psy8076 332 GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAP 372 (737)
Q Consensus 332 ~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P 372 (737)
+++..|+..+-.+. ...+.++...++.-++.++++.+
T Consensus 130 A~~~~Gav~vpl~~----~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 130 GLHKLGAIAVPATH----MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp HHHHHTCEEEECCT----TCCHHHHHHHHHHHTCCEEEEES
T ss_pred HHHhCCEEEEeCCc----cCCHHHHHHHHHhcCCCEEEEec
Confidence 99999999888764 36789999999999999998754
No 82
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=27.47 E-value=1.9e+02 Score=29.30 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=62.0
Q ss_pred CCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHH
Q psy8076 92 AKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAAR 171 (737)
Q Consensus 92 pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~ 171 (737)
+-++.+-.++-+ .+=||+. +-..+.+.....+--+++|.+..+....+-.-+...++|.+.|.-++.+-|...+.
T Consensus 49 G~~IylK~E~ln----ptGSfK~-RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~ 123 (344)
T 3vc3_A 49 GAYVAVKQEMMQ----PTASIAD-RPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 123 (344)
T ss_dssp CSEEEEEEGGGS----TTSBTTH-HHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCH
T ss_pred CCEEEEEecCCC----CCCCcHH-HHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChH
Confidence 456777766521 1224442 12223344333333367887767777778888888899999998887777766666
Q ss_pred HHHHHHhhcCCcEEEEcC
Q psy8076 172 ELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 172 ~l~~~l~~~~~~~vl~~~ 189 (737)
.-...++..++++++++.
T Consensus 124 ~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 124 ERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHcCCEEEEECC
Confidence 677889999999999864
No 83
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=27.25 E-value=1.2e+02 Score=32.69 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=68.1
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEecCCH--HHHHHHHHHHHcCCEEEecC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIP--EAIVSMLATVRLGAIHSVVF 165 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~--e~vva~lA~~~~G~~~vpl~ 165 (737)
|+.+|++... .-+| +.-.+|.+.+...+........ ..++.++|++...+|-.- .+...+++.+..|+..+..+
T Consensus 177 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~ 256 (536)
T 3ni2_A 177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP 256 (536)
T ss_dssp TTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS
T ss_pred ccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC
Confidence 6777765432 2222 3458899888766544332222 247889999999888653 34456788889999988875
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcC
Q psy8076 166 GGFAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
.+.++.+...+++.++.++....
T Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P 279 (536)
T 3ni2_A 257 -KFEIGSLLGLIEKYKVSIAPVVP 279 (536)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECH
T ss_pred -CCCHHHHHHHHHHhCCeEEEccH
Confidence 57788999999999999988764
No 84
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=27.00 E-value=5.2e+02 Score=26.37 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=50.9
Q ss_pred CCEEEEEecCCHHHHHHHHHHHHcCCEEEecC--C-CCCHHHHHHHHhhcCCcEEEEcC-CcccCCccccchHHHHHHHH
Q psy8076 134 GDRVLIYMPLIPEAIVSMLATVRLGAIHSVVF--G-GFAARELCARLEHAKPKVIIAAS-CGVEPNKVVRYKTILNEALE 209 (737)
Q Consensus 134 Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~--~-~~~~~~l~~~l~~~~~~~vl~~~-~~~~~~~~~~~~~~~~~~~~ 209 (737)
||.|.+.-|.-..+. -++...|+.+++++ + ....+.++..++..++++|++.. .....+...+.. .+.+..+
T Consensus 133 gd~V~v~~p~y~~~~---~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~-~~~~l~~ 208 (427)
T 3ppl_A 133 TVKWICPVPGYDRHF---SITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTED-VAKRLSA 208 (427)
T ss_dssp CCEEEEEESCCHHHH---HHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHH-HHHHHHH
T ss_pred CCEEEEcCCCcHHHH---HHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHH-HHHHHHH
Confidence 899998888776544 34456787666554 2 24678888888666788888664 333444444433 3455555
Q ss_pred hc-CCCCCeEEEEec
Q psy8076 210 IS-SCKPDYCIIFQR 223 (737)
Q Consensus 210 ~~-~~~~~~viv~~~ 223 (737)
.+ . .....++.+.
T Consensus 209 ~a~~-~~~~~ii~De 222 (427)
T 3ppl_A 209 META-APDFRVVWDN 222 (427)
T ss_dssp CCCS-STTCEEEEEC
T ss_pred HHhh-cCCCEEEEEC
Confidence 44 3 3344455444
No 85
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=26.43 E-value=1.4e+02 Score=33.31 Aligned_cols=79 Identities=13% Similarity=-0.060 Sum_probs=57.8
Q ss_pred eeccCchhHHHHH---HHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhc
Q psy8076 287 ILRPVGGHIATLA---WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNH 363 (737)
Q Consensus 287 V~~th~~~~~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~ 363 (737)
..+|.+.+..... ..+. ..++.++|++..+++..... +..+++++..|+..+.++. ...++++...++..
T Consensus 106 ~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl~~----~~~~~~l~~~l~~~ 178 (652)
T 1pg4_A 106 KHISYRELHRDVCRFANTLL-DLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVIFG----GFSPEAVAGCIIDS 178 (652)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECCT----TSCHHHHHHHHHHH
T ss_pred eEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEecCC----CCCHHHHHHHHHhc
Confidence 4566655433322 2222 36889999999998877654 3447999999999988775 36789999999999
Q ss_pred CCcEEeecH
Q psy8076 364 KVNGLFTAP 372 (737)
Q Consensus 364 ~vt~l~~~P 372 (737)
++.++++..
T Consensus 179 ~~~~li~~~ 187 (652)
T 1pg4_A 179 SSRLVITAD 187 (652)
T ss_dssp TCSEEEEES
T ss_pred CCCEEEEcC
Confidence 999998754
No 86
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=26.30 E-value=3.7e+02 Score=27.78 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=47.6
Q ss_pred HHHcCCCCCCEEEEEecCCHHHHHHHH-HHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchH
Q psy8076 126 LAAIGVSAGDRVLIYMPLIPEAIVSML-ATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202 (737)
Q Consensus 126 L~~~Gv~~Gd~V~i~~~~~~e~vva~l-A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~ 202 (737)
|... +++||.|.+.-+........+- .+-+.|+.++.++.. ..+.++..++. +.++|+...-....+...++..
T Consensus 113 l~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~ 187 (414)
T 3ndn_A 113 LGAL-LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAA 187 (414)
T ss_dssp HHTT-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHH
T ss_pred HHHH-hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHH
Confidence 3334 6799999887766655443332 234578888777665 67788887765 6778887665555566555443
No 87
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=26.30 E-value=1.6e+02 Score=32.16 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=64.1
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHH-HHHHHHHHHHcCCEEEecCCC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE-AIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~G~~~vpl~~~ 167 (737)
++.+|++... .-+| +.-.+|.+.+...+..++ ...++.++|++..++|-+.. .+..++..+..|+..+.++..
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 257 (563)
T 1amu_A 181 STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD 257 (563)
T ss_dssp TTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence 5667766443 2222 235788888865544332 34588999999988876532 234567788889988877642
Q ss_pred --CCHHHHHHHHhhcCCcEEEEcC
Q psy8076 168 --FAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 168 --~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
..+..+...+++.++.++....
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P 281 (563)
T 1amu_A 258 TINDFVKFEQYINQKEITVITLPP 281 (563)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECH
T ss_pred hhcCHHHHHHHHHHcCCcEEEeCH
Confidence 5678888999999999888764
No 88
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=26.23 E-value=3.3e+02 Score=27.64 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=45.9
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecC--CC--CCHHHHHHHHhhcCCcEEEEcCCcccCCccccchH
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVF--GG--FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~--~~--~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~ 202 (737)
+++||.|.+..+...... ..-++...|+.++.++ ++ ...+.++..+++.++++|+........+...++..
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 157 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKA 157 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHH
Confidence 678999988876544311 2234556687665544 32 36788999988667788887765555666666544
No 89
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=26.17 E-value=3.9e+02 Score=27.34 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=45.6
Q ss_pred CCCCCEEEEEecCCHHHHHHHH-HHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccch
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSML-ATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~l-A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~ 201 (737)
+++||.|.+..+....+.-.+- ++...|+.++.++.. ..+.++..++. +.++|+........+...++.
T Consensus 98 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~ 167 (404)
T 1e5e_A 98 LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-IPGEVKKHMKP-NTKIVYFETPANPTLKIIDME 167 (404)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHH
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHH
Confidence 4689999888777666544332 356678888877655 45677777654 567777766555556665543
No 90
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=24.98 E-value=1.6e+02 Score=29.68 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=43.4
Q ss_pred CCCCCCEEEEEecCCH------HHHHHHHHHH-HcCCEEEecCCCC---------C---HHHHHHHHhhcCCcEEEEcCC
Q psy8076 130 GVSAGDRVLIYMPLIP------EAIVSMLATV-RLGAIHSVVFGGF---------A---ARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 130 Gv~~Gd~V~i~~~~~~------e~vva~lA~~-~~G~~~vpl~~~~---------~---~~~l~~~l~~~~~~~vl~~~~ 190 (737)
-+++||+|+|+.|.+. +.+-.....+ ..|.-++.-.... + ++++..++.+-..+.|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999752 3333333333 3466655433111 1 245667777888889998877
Q ss_pred cccCCccccc
Q psy8076 191 GVEPNKVVRY 200 (737)
Q Consensus 191 ~~~~~~~~~~ 200 (737)
.....+.+++
T Consensus 88 G~g~~rlL~~ 97 (327)
T 4h1h_A 88 GFNSNQLLPY 97 (327)
T ss_dssp CSCGGGGGGG
T ss_pred chhHHHHhhh
Confidence 6655555443
No 91
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=24.09 E-value=3.4e+02 Score=27.05 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=40.9
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC-------CCHHHHHHHHhhcCCcEEEEcCCcccCCccc
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG-------FAARELCARLEHAKPKVIIAASCGVEPNKVV 198 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~-------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~ 198 (737)
+++||.|.+..+....+. .++...|+.+++++.. ...+.++..+ ..++++++........+...
T Consensus 103 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~ 173 (383)
T 3kax_A 103 TKENESVLVQPPIYPPFF---EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLCSPHNPIGRVW 173 (383)
T ss_dssp CCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEESSBTTTTBCC
T ss_pred CCCCCEEEEcCCCcHHHH---HHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEeCCCCCCCcCc
Confidence 467888887776665543 3456678877776642 5778888888 45677776654444444433
No 92
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=24.03 E-value=4.1e+02 Score=26.65 Aligned_cols=65 Identities=20% Similarity=0.065 Sum_probs=39.8
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCC--C-----CCHHHHHHHHhhcCCcEEEEcCCcccCCccc
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG--G-----FAARELCARLEHAKPKVIIAASCGVEPNKVV 198 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~--~-----~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~ 198 (737)
.++||.|.+.-|....+. .++...|+.+++++. . ...+.++..+++.++++|+........+...
T Consensus 108 ~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~ 179 (390)
T 1d2f_A 108 SETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVW 179 (390)
T ss_dssp SCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCC
T ss_pred cCCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCc
Confidence 367888888777665543 334566776655442 2 5678888888765677776544333334433
No 93
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=24.01 E-value=5.4e+02 Score=25.54 Aligned_cols=77 Identities=8% Similarity=0.087 Sum_probs=48.1
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecC--C--CCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHH
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVF--G--GFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~--~--~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~ 206 (737)
.++||.|.+..+....+. .++...|+.+++++ . ....+.++..+++.++++|++.......+...+ .+.+.+
T Consensus 113 ~~~gd~Vl~~~~~y~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-~~~l~~ 188 (369)
T 3cq5_A 113 GGPGRTALGFQPSYSMHP---ILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTS-LDDVER 188 (369)
T ss_dssp CSTTCEEEEEESSCTHHH---HHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCC-HHHHHH
T ss_pred cCCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCC-HHHHHH
Confidence 368899988887665443 34556787665554 3 345788888887657787877554444455544 344555
Q ss_pred HHHhc
Q psy8076 207 ALEIS 211 (737)
Q Consensus 207 ~~~~~ 211 (737)
..+..
T Consensus 189 l~~~~ 193 (369)
T 3cq5_A 189 IINVA 193 (369)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 55544
No 94
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=23.97 E-value=1.7e+02 Score=31.41 Aligned_cols=69 Identities=10% Similarity=0.169 Sum_probs=54.6
Q ss_pred hhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHH
Q psy8076 305 IYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379 (737)
Q Consensus 305 ~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~ 379 (737)
..++.++|++...++-.... +..+++++..|+..+..+. ...+.++...++.-++..+++.+.....+.
T Consensus 67 ~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~~----~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 67 TLGVHPEERILLVMLDTVAL--PVAFLGALYAGVVPVVANT----LLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp HTTCCTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEECCT----TCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred HcCCCCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEecCc----ccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 35889999998888776543 3447899999999888774 367889999999999999999877655443
No 95
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=23.61 E-value=2.7e+02 Score=28.05 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=36.0
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC--------CCHHHHHHHHhhcCCcEEEEcCCcccCCc
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG--------FAARELCARLEHAKPKVIIAASCGVEPNK 196 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~--------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~ 196 (737)
+++||.|.+..+....+. .++...|+.++.++.. ...+.++..+++ +++++........+.
T Consensus 111 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~~p~nptG~ 179 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFN---SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCNPHNPVGR 179 (391)
T ss_dssp SCTTCEEEECSSCCTHHH---HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEESSBTTTTB
T ss_pred CCCCCEEEEcCCCCHHHH---HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEECCCCCCCc
Confidence 457787777665554433 3445667776666543 467777777776 666655544333343
No 96
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=23.56 E-value=5.4e+02 Score=25.48 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=38.8
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEE--EecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccc
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIH--SVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~--vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~ 198 (737)
+++||.|.+..+....+. .++...|+.+ +|+++....+.++..++.- .++++........+...
T Consensus 102 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~ 167 (377)
T 3fdb_A 102 TPAQSKVIVPTPAYPPFF---HLLSATQREGIFIDATGGINLHDVEKGFQAG-ARSILLCNPYNPLGMVF 167 (377)
T ss_dssp SCTTCCEEEEESCCTHHH---HHHHHHTCCEEEEECTTSCCHHHHHHHHHTT-CCEEEEESSBTTTTBCC
T ss_pred cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEEccCCCCCCHHHHHHHhccC-CCEEEEeCCCCCCCCCC
Confidence 468899888877665543 3344556654 4555446788888888763 55555544444444443
No 97
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=23.35 E-value=1.4e+02 Score=30.64 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC-----CCHHHHHHHHhhcC--CcEEEEc
Q psy8076 124 GSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG-----FAARELCARLEHAK--PKVIIAA 188 (737)
Q Consensus 124 ~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~--~~~vl~~ 188 (737)
..|...++++||.|.+-.+....+. -++...|+.++.++.+ ...+.++..+...+ .++|+..
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 3345557899999988776655433 3556789887666532 47788888774434 6777643
No 98
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.33 E-value=1.8e+02 Score=29.42 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=44.0
Q ss_pred CCCCCCEEEEEecCCH------HHHHHHHHHHH-cCCEEEecCCC---------CC---HHHHHHHHhhcCCcEEEEcCC
Q psy8076 130 GVSAGDRVLIYMPLIP------EAIVSMLATVR-LGAIHSVVFGG---------FA---ARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 130 Gv~~Gd~V~i~~~~~~------e~vva~lA~~~-~G~~~vpl~~~---------~~---~~~l~~~l~~~~~~~vl~~~~ 190 (737)
-+++||+|+|+.|.+. +.+-.....++ .|.-++.-... .+ +++|..++.+-.++.|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 4789999999999883 22333333343 47666542211 11 245666777778889998887
Q ss_pred cccCCccccc
Q psy8076 191 GVEPNKVVRY 200 (737)
Q Consensus 191 ~~~~~~~~~~ 200 (737)
.....+.+++
T Consensus 89 G~g~~rlL~~ 98 (336)
T 3sr3_A 89 GMNSNSLLPY 98 (336)
T ss_dssp CSCGGGGGGG
T ss_pred cccHHHHhhh
Confidence 6665555444
No 99
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=23.27 E-value=1.8e+02 Score=30.65 Aligned_cols=91 Identities=7% Similarity=0.009 Sum_probs=64.0
Q ss_pred CCceEEEEeCC---CCCceeEEcHHHHHHHHHHHHHHHHHcCCCC------CCEEEEEecCCH--HHHHHHHHHHHcCCE
Q psy8076 92 AKKVALIHDSP---VTKSIRKVTYAELQEQVSLLAGSLAAIGVSA------GDRVLIYMPLIP--EAIVSMLATVRLGAI 160 (737)
Q Consensus 92 pd~~Al~~~~~---~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~------Gd~V~i~~~~~~--e~vva~lA~~~~G~~ 160 (737)
++.+|++.... ..-+.-.+|.+.+...+..++..+ ++.+ +|++...+|-.- .++..+++.+..|+.
T Consensus 182 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~ 258 (480)
T 3t5a_A 182 YPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY---FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 258 (480)
T ss_dssp CCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH---CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCC
T ss_pred CCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh---ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCc
Confidence 67777765431 112346899999987777666554 4444 888888888654 445678899999999
Q ss_pred EEecCCC---CCHHHHHHHHhhcCCcEE
Q psy8076 161 HSVVFGG---FAARELCARLEHAKPKVI 185 (737)
Q Consensus 161 ~vpl~~~---~~~~~l~~~l~~~~~~~v 185 (737)
.+..++. ..++.+...+++.++.+.
T Consensus 259 ~v~~~~~~~~~~~~~~~~~i~~~~~t~~ 286 (480)
T 3t5a_A 259 AVLTSPVSFLQRPARWMHLMASDFHAFS 286 (480)
T ss_dssp EEECCHHHHHHCTHHHHHHTTSSSEEEE
T ss_pred eEEECHHHHHHCHHHHHHHHHhhceeEe
Confidence 8888654 366788888998888833
No 100
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=22.75 E-value=1.8e+02 Score=29.94 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=44.2
Q ss_pred CCCCCCEEEEEecCCH------HHHHHHHHHHH-cCCEEEecCCC---------CC---HHHHHHHHhhcCCcEEEEcCC
Q psy8076 130 GVSAGDRVLIYMPLIP------EAIVSMLATVR-LGAIHSVVFGG---------FA---ARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 130 Gv~~Gd~V~i~~~~~~------e~vva~lA~~~-~G~~~vpl~~~---------~~---~~~l~~~l~~~~~~~vl~~~~ 190 (737)
-+++||+|+|+.|.+. +.+-.....++ .|.-++.-... .+ +++|..++.+-.+++|++...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 5889999999999873 23333333343 57666543211 11 245666677778888998887
Q ss_pred cccCCccccc
Q psy8076 191 GVEPNKVVRY 200 (737)
Q Consensus 191 ~~~~~~~~~~ 200 (737)
.....+.+++
T Consensus 119 Gyga~rlLp~ 128 (371)
T 3tla_A 119 GDNSNSLLPF 128 (371)
T ss_dssp CSCGGGGGGG
T ss_pred cccHHHHHhh
Confidence 6655555544
No 101
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=22.68 E-value=2.8e+02 Score=28.13 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=39.3
Q ss_pred CCCCCEEEEEecCCHHHHHHHHH-HHHcCCEEEecCCC-----CCHHHHHHHHhhcCCcEEEEcCCcccCCccccchH
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLA-TVRLGAIHSVVFGG-----FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA-~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~ 202 (737)
+++||.|.+..+........+.. +-+.|+.++.++.+ ...+.++..++. ++++|+........+...++..
T Consensus 110 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~ 186 (406)
T 3cai_A 110 AGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK-STRLVAVNSASGTLGGVTDLRA 186 (406)
T ss_dssp GBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEESBCTTTCBBCCCHH
T ss_pred cCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC-CceEEEEeCCcCCccccCCHHH
Confidence 56788887766544433322222 22357766555432 356677777653 5667766654445555555543
No 102
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=22.37 E-value=3e+02 Score=27.55 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=42.6
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC------CCHHHHHHHHhhcCCcEEEEcCCcccCCcccc
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG------FAARELCARLEHAKPKVIIAASCGVEPNKVVR 199 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~ 199 (737)
+++||.|.+..+....+.- ++...|+.+++++.+ ...+.++..++. ++++|+........+...+
T Consensus 102 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~ 172 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQLYD---IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMD 172 (375)
T ss_dssp CCTTCEEEEEESSCTHHHH---HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCC
T ss_pred cCCCCEEEEeCCCchhHHH---HHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCC
Confidence 5789999988877655432 355678766655432 367888888864 6777777654444454444
No 103
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=22.24 E-value=3.9e+02 Score=26.82 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=45.4
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecC--C--CCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchH
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVF--G--GFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~--~--~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~ 202 (737)
+++||.|.+..+....+. ..-++...|+.++.++ + ....+.+...+++.++++|+........+...++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 164 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEG 164 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHH
Confidence 468999888877655542 2224566787665554 3 356788888887656777777655445566556443
No 104
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=21.65 E-value=2.2e+02 Score=30.87 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCceEEEEeCC-CCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHH--HHHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIHDSP-VTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE--AIVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e--~vva~lA~~~~G~~~vpl~~ 166 (737)
|+.+|++.... -+| +.-.+|.+.+...+..++.. ..++.++|++...+|-.-. ++..+++.+..|+..+.+.+
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 252 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRT 252 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCH
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcch
Confidence 67788776542 112 24688999887655544321 2588999999999887643 44557788888988877754
Q ss_pred ---CCCHHHHHHHHhhcCCcEEEEcC
Q psy8076 167 ---GFAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 167 ---~~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
...+..+...+++.++.++++..
T Consensus 253 ~~~~~~~~~~~~~i~~~~~t~~~~~p 278 (576)
T 3gqw_A 253 QDFAMRPLQWLKLISKNRGTVSVAPP 278 (576)
T ss_dssp HHHHHCTTHHHHHHHHTTCCEEEECH
T ss_pred hHhhhCHHHHHHHHHHhCCeEEEcCH
Confidence 23566788899999999888764
No 105
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=21.33 E-value=5.3e+02 Score=25.56 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=43.0
Q ss_pred CCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCC---C--CCHHHHHHHHhhcCCcEEEEcCCcccCCccccchH
Q psy8076 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG---G--FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202 (737)
Q Consensus 132 ~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~---~--~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~ 202 (737)
++||.|.+.-+......+ .-++.+.|+.++.++. + ...+.++..++..++++|+........+...++..
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~ 158 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKA 158 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHH
Confidence 689988776443322221 2344567877666543 2 46788988887656778877665555566555443
No 106
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=21.23 E-value=1.3e+02 Score=29.31 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEecCC
Q psy8076 120 SLLAGSLAAIGVSAGDRVLIYMPLI 144 (737)
Q Consensus 120 ~~lA~~L~~~Gv~~Gd~V~i~~~~~ 144 (737)
..+.+.|+++||++||.|.|...-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4577788999999999999997643
No 107
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=20.88 E-value=3.4e+02 Score=27.44 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=35.9
Q ss_pred CCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC-------CCHHHHHHHHhhcCCcEEEEcCCcccCCcc
Q psy8076 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG-------FAARELCARLEHAKPKVIIAASCGVEPNKV 197 (737)
Q Consensus 132 ~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~-------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~ 197 (737)
++||.|.+.-|....+. .++...|+.++.++.. ...+.++..+++.++++|+........+..
T Consensus 111 ~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 180 (399)
T 1c7n_A 111 KPGDGVIIITPVYYPFF---MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRV 180 (399)
T ss_dssp CTTCEEEECSSCCTHHH---HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBC
T ss_pred CCCCEEEEcCCCcHhHH---HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcC
Confidence 56777777655544433 2334567766655432 557777777765566666654443333443
No 108
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=20.82 E-value=3.2e+02 Score=28.03 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=44.2
Q ss_pred CCCCCEEEEEecCCHHHHHHHHH-HHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHH
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLA-TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI 203 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA-~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~ 203 (737)
+++||.|.+..+........+.. +-+.|+.++.++.+ .+.++..++. +.++|+........+...++...
T Consensus 92 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i 162 (412)
T 2cb1_A 92 LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--PEAVREALSA-KTRAVFVETVANPALLVPDLEAL 162 (412)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS--HHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--HHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHH
Confidence 57899988887766544433332 34568877777654 7777777754 56777776554455555554433
No 109
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=20.48 E-value=1.8e+02 Score=22.11 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=23.7
Q ss_pred hHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEee
Q psy8076 589 TSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626 (737)
Q Consensus 589 ~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~ 626 (737)
..++++.|.++|.|.+|..+.-+. ..++-+..+
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~-----D~ll~v~~~ 47 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEY-----DLIVKVETD 47 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSC-----SEEEEEEES
T ss_pred HHHHHHHHhCCCCeeEEEEEcccC-----CEEEEEEEC
Confidence 478999999999999998874322 255555543
No 110
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=20.36 E-value=2.5e+02 Score=31.03 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=66.4
Q ss_pred CCceEEEEe-CCCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHH-HHHHHHHHHHcCCEEEecC-C
Q psy8076 92 AKKVALIHD-SPVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE-AIVSMLATVRLGAIHSVVF-G 166 (737)
Q Consensus 92 pd~~Al~~~-~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~G~~~vpl~-~ 166 (737)
|+.+|.+.. ..-+| +.-.+|.+.+...+.. ....++.++|++...+|-+.+ .+..+++.+..|+..+..+ .
T Consensus 163 ~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp TTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred CCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence 667776543 22222 3457888877543321 234588999999999886643 3345788888999888764 3
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 167 GFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
...++.+...+++.++.++.....
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps 262 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTAS 262 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHH
T ss_pred cCCHHHHHHHHHHhCCcEEEccHH
Confidence 578899999999999999887654
No 111
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=20.11 E-value=4.1e+02 Score=26.36 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=43.5
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCC--C--CCHHHHHHHHhhcCCcEEEEcCCcccCCccccc
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG--G--FAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~--~--~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~ 200 (737)
+++||.|.+.-+..... ...-.+...|+.++.++. + ...+.++..+++.++++|+........+...++
T Consensus 74 ~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 146 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPV 146 (384)
T ss_dssp CCTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCH
T ss_pred cCCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcH
Confidence 67899888876543221 111222356776665543 3 478999999988778888877655555655553
No 112
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=20.03 E-value=6.3e+02 Score=25.47 Aligned_cols=67 Identities=10% Similarity=-0.000 Sum_probs=45.8
Q ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccch
Q psy8076 131 VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201 (737)
Q Consensus 131 v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~ 201 (737)
+++||.|.+--+....+ .-++...|+.+++++. ...+.++..+++.++++|++..-....+...++.
T Consensus 140 ~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~ 206 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMSL---WEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLA 206 (409)
T ss_dssp CCTTCEEEEETTSCHHH---HHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHH
T ss_pred cCCCCEEEECCCcCHHH---HHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHH
Confidence 46889888766655443 3455667888888754 4678888888877678888876555555555533
Done!