RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8076
(737 letters)
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 862 bits (2228), Expect = 0.0
Identities = 318/692 (45%), Positives = 419/692 (60%), Gaps = 98/692 (14%)
Query: 37 EAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVA 96
+ PE+FW + N+ W K W+++LDNS+ PFT+WFVGG +N CYNA+DRH+E G ++A
Sbjct: 1 KEPEAFWAEQANLIDWYKPWEKVLDNSNPPFTRWFVGGRLNLCYNAVDRHIEDGRGDQIA 60
Query: 97 LIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156
LI+DSPVT + R TYAEL ++VS LAG L +GV GDRV+IYMP+IPEA+++MLA R
Sbjct: 61 LIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACAR 120
Query: 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPD 216
+GAIHSVVFGGFA++EL +R++ AKPK+I+ AS G+EP +VV YK +L++ALE+S KP
Sbjct: 121 IGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPH 180
Query: 217 YCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCS 276
+I R V A L PG D+ W + +A+ CVPVE+ DPLYILYTSGTTGK
Sbjct: 181 KVLILNRGQV-PAPLKPGRDLDWAELMAKARPVDCVPVESTDPLYILYTSGTTGK----- 234
Query: 277 ELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAA 336
PKG++R GG+ L W+M IY + DV+W ASD+GWVVGHSYI YGPL
Sbjct: 235 -------PKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLH 287
Query: 337 GITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396
G T+V+YEGKP TPD Y+RVI + VN LFTAPTA+R IR++D D +Y SL
Sbjct: 288 GATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSL 347
Query: 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLP 456
R LF+AGE D T W EK+ V +++HWWQTETG ITA+C+G + + P S G P
Sbjct: 348 RALFLAGERLDSPTLEWIEKTLGVPVIDHWWQTETGWPITANCVGLELLPIKP-GSPGKP 406
Query: 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE 516
PGYD V+++ G E
Sbjct: 407 VPGYD-------------------------------------------VQVLDETGEELG 423
Query: 517 PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576
P ELG IV+KLPLPPG + TL+ +RF K+Y KFPGYYDT D+GY DE+GY++V R
Sbjct: 424 PGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRT 483
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFS 636
DDVINVAGHRLST +E+ VL HPDV + AV+GV + KG++P L + K
Sbjct: 484 DDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKD--------- 534
Query: 637 GLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFK 696
C +++ E+ LVRE IGP+AAF+
Sbjct: 535 --------------------------------DCKIDADQLENEIVALVREQIGPVAAFR 562
Query: 697 LSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
V LP+TRSGK R+++ +A + +
Sbjct: 563 NVVFVKRLPKTRSGKILRRTLRKIADGEDYKD 594
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 573 bits (1480), Expect = 0.0
Identities = 255/700 (36%), Positives = 374/700 (53%), Gaps = 102/700 (14%)
Query: 26 DKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDR 85
Y + Y++SI+ PE+FW + W + ++LD S+ PF +WFVGG N C+NA+DR
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRIDWQTPFTQVLDYSNPPFARWFVGGRTNLCHNAVDR 61
Query: 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP 145
H+ + +++ALI S T R T+ +L ++V+ +A L ++GV GDRVLIYMP+I
Sbjct: 62 HLAK-RPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIA 120
Query: 146 EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILN 205
EA +MLA R+GAIHSVVFGGFA+ L AR++ AKP +I++A G KVV YK +L+
Sbjct: 121 EAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLD 180
Query: 206 EALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHR--CVPVEANDPLYIL 263
EA+ ++ KP + ++ R + G D+ + AQ L R +E+N+P YIL
Sbjct: 181 EAIALAQHKPRHVLLVDRG-LAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYIL 239
Query: 264 YTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323
YTSGTTGK PKG+ R GG+ LA +M I+ + ++ ASD+GWV
Sbjct: 240 YTSGTTGK------------PKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWV 287
Query: 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
VGHSYI Y PL AG+ ++MYEG P R PD ++R++ +KVN +F+APTA+RV++++D
Sbjct: 288 VGHSYIVYAPLLAGMATIMYEGLPTR-PDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDP 346
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ 443
L ++ SLR LF+AGE D T +W ++ V +++++WQTETG I A G
Sbjct: 347 A--LLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGV- 403
Query: 444 HDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502
+ P + S G+P GY+ V++L E
Sbjct: 404 -EDRPTRLGSPGVPMYGYN------------------VKLLNEV---------------- 428
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF-PGYYDTMDA 561
G C P+E G +V++ PLPPG M T++ RF+K Y++ F Y T D
Sbjct: 429 --------TGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDW 480
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
G D +GY ++ R DDVINVAGHRL T +E+ + SHP V + AV+GV + KG++
Sbjct: 481 GIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVA 540
Query: 622 LYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKEL 681
+ K D + LE KE+
Sbjct: 541 FVVPK----DSDSLADREARLALE---------------------------------KEI 563
Query: 682 KELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
LV +G +A V+ LP+TRSGK R++I +A
Sbjct: 564 MALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIA 603
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 565 bits (1458), Expect = 0.0
Identities = 255/687 (37%), Positives = 354/687 (51%), Gaps = 110/687 (16%)
Query: 32 YRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGM 91
Y++SIE PE FW + W K WD++LD S+ PF KWFVGG++NA YN +DRH++ G
Sbjct: 1 YKESIEDPEEFWAEQAEELDWFKPWDKVLDWSNPPFAKWFVGGKLNASYNCLDRHLKAGR 60
Query: 92 AKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSM 151
KVA+I + R +TY EL +V A L ++GV GDRV IYMP+IPE ++M
Sbjct: 61 GNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAM 120
Query: 152 LATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEIS 211
LA R+GAIHSVVF GF+A L R+ AK K++I A G KV+ K I++EALE
Sbjct: 121 LACARIGAIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEK- 179
Query: 212 SCKPDYCIIFQRRCVEEAELTPGYDILWDDALA-QRLSHRCVPVEANDPLYILYTSGTTG 270
+ I+ +R E + G D+ W D +A P++A DPL+ILYTSG+TG
Sbjct: 180 CPSVEKVIVV-KRTGGEVPMVEGRDVWWHDLMAKASPYCEPEPMDAEDPLFILYTSGSTG 238
Query: 271 KPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYIC 330
K PKG++ GG++ A T ++++ DDV+W +D+GW+ GHSYI
Sbjct: 239 K------------PKGVVHTTGGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIV 286
Query: 331 YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQ 390
YGPLA G T+VMYEG PD PDP +++ ++ +KV +TAPTA+R++ R + +
Sbjct: 287 YGPLANGATTVMYEGAPD-YPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWP--KK 343
Query: 391 YSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETGHSITAHCLGYQHDTV 447
+ SLR L GE + E W + +++ WWQTETG + G
Sbjct: 344 HDLSSLRLLGSVGEPINPEAWMWYYEVIGKERCPIVDTWWQTETGGHMITPLPGA-TPLK 402
Query: 448 PPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRI 507
P S PFPG VE I
Sbjct: 403 PG--SATRPFPG-------------------------------------------VEPAI 417
Query: 508 IRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDEN 567
+ +G+E E G +V+K P PG + T+Y +R++K YF+KFPGYY T D DE+
Sbjct: 418 VDEEGNEVEGGVEGYLVIKRPW-PGMLRTIYGDHERYVKTYFSKFPGYYFTGDGARRDED 476
Query: 568 GYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627
GY ++ R DDVINV+GHRL T+ +E ++SHP V + AV+G P+ KGE +
Sbjct: 477 GYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAF----- 531
Query: 628 IPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE 687
V +K S +E+ KELK+ VR+
Sbjct: 532 -----------------------------VTLKDGVEPS--------DELRKELKKHVRK 554
Query: 688 AIGPIAAFKLSTSVTGLPRTRSGKTAR 714
IGPIA V GLP+TRSGK R
Sbjct: 555 EIGPIATPDEIIFVPGLPKTRSGKIMR 581
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 536 bits (1383), Expect = 0.0
Identities = 253/707 (35%), Positives = 363/707 (51%), Gaps = 112/707 (15%)
Query: 24 QNDKYYDAYRKSIEAPESFWTDVGN-MATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82
++Y + Y +SIE P+ FW + + W K + ++LD S PF KWFVGGE+N YN
Sbjct: 3 NLEQYKELYEESIEDPDKFWAKLARELLDWFKPFTKVLDWSFPPFYKWFVGGELNVSYNC 62
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+DRH+E KVA+I + +RK+TY EL +V A L ++GV GDRV IYMP
Sbjct: 63 VDRHLEA-RPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMP 121
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
+IPEA ++MLA R+GAIHSVVFGGF+A L R+ A K++I A G+ KV+ K
Sbjct: 122 MIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKA 181
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALA-QRLSHRCVPVEANDPLY 261
I++EALE ++ ++ RR G D+ W D +A P+++ DPL+
Sbjct: 182 IVDEALEKCPVSVEHVLVV-RRTGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLF 240
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
ILYTSG+TGK PKG+L GG++ A TM ++++ D++W +D+G
Sbjct: 241 ILYTSGSTGK------------PKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVG 288
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
W+ GHSYI YGPLA G T+VM+EG P PDP +++ +I HKV +TAPTA+R + R
Sbjct: 289 WITGHSYIVYGPLANGATTVMFEGTPT-YPDPGRFWEIIEKHKVTIFYTAPTAIRALMRL 347
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETGHSITAH 438
+ ++ SLR L GE + E W K +++ WWQTETG +
Sbjct: 348 GDE--WVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITP 405
Query: 439 CLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNAT 498
G T P S LPF G
Sbjct: 406 LPGAT-PTKPG--SATLPFFG--------------------------------------- 423
Query: 499 HFTSVEVRIIRNDGSECE-PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557
+E ++ +G+ E P E G +V+K P PG + T+Y +RF+ YF+ FPGYY
Sbjct: 424 ----IEPAVVDEEGNPVEGPGEGGYLVIKQPW-PGMLRTIYGDHERFVDTYFSPFPGYYF 478
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
T D D++GYI++T R DDVINV+GHRL T+ +E ++SHP V + AV+G+P+ KG+
Sbjct: 479 TGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQ 538
Query: 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEI 677
+ V +K D+E+
Sbjct: 539 AIYAF----------------------------------VTLKDGYEP--------DDEL 556
Query: 678 GKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
KEL++ VR+ IGPIA V GLP+TRSGK R+ + +A +
Sbjct: 557 RKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 527 bits (1360), Expect = e-179
Identities = 246/706 (34%), Positives = 353/706 (50%), Gaps = 114/706 (16%)
Query: 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAID 84
++Y Y++S+E PE FW + W K +D +LD + PF KWF GE+N YN +D
Sbjct: 16 MEQYKALYQESVEDPEGFWAEQAKRLDWFKPFDTVLD-WNAPFIKWFEDGELNVSYNCLD 74
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
RH++ KVA+I + RK+TY EL +V A +L ++GV GDRV IYMP+I
Sbjct: 75 RHLKTR-GDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMI 133
Query: 145 PEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL 204
PEA V+MLA R+GA+HSVVFGGF+A L R+ A K++I A GV K + K +
Sbjct: 134 PEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANV 193
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS-HRCVPVEANDPLYIL 263
+EAL + I+ RR + + G D+ W + +A P++A DPL+IL
Sbjct: 194 DEALANCPSV-EKVIVV-RRTGGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFIL 251
Query: 264 YTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323
YTSG+TGK PKG+L GG++ A TM +++ DV+W +D+GWV
Sbjct: 252 YTSGSTGK------------PKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWV 299
Query: 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
GHSYI YGPLA G T++M+EG P+ PDP +++ VI HKV +TAPTA+R + +E
Sbjct: 300 TGHSYIVYGPLANGATTLMFEGVPN-YPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGD 358
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETG-HSITAHC 439
+ +Y SLR L GE + E W K +++ WWQTETG IT
Sbjct: 359 E--HPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITP-- 414
Query: 440 LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATH 499
L P S P PG
Sbjct: 415 LPGATPLKPG--SATRPLPG---------------------------------------- 432
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559
++ ++ +G+ E E G +V+K P PG M T+Y +RF+K YF+ F G Y T
Sbjct: 433 ---IQPAVVDEEGNPLEGGEGGNLVIKDPW-PGMMRTIYGDHERFVKTYFSTFKGMYFTG 488
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP V + AV+G P+ KG+
Sbjct: 489 DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGI 548
Query: 620 FCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGK 679
+ ++ L P +E+ K
Sbjct: 549 YA-FV--------------------------------TLKGGEEP---------SDELRK 566
Query: 680 ELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKP 725
EL+ VR+ IGPIA + GLP+TRSGK R+ + +A +
Sbjct: 567 ELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEE 612
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 485 bits (1251), Expect = e-163
Identities = 255/704 (36%), Positives = 371/704 (52%), Gaps = 104/704 (14%)
Query: 26 DKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDR 85
+Y + Y++SIE PE+FW + W RILD S+ PF +WF GG N C+NA+DR
Sbjct: 1 MRYEEFYQRSIEQPEAFWAEQARRIDWQTPPQRILDYSNPPFARWFAGGRTNLCHNALDR 60
Query: 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP 145
H++ +++AL+ S T R +TY +L +V++ A +L A+GV GDRVLIYMP+I
Sbjct: 61 HLDE-RGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIA 119
Query: 146 EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILN 205
EA+ +MLA R+GAIHSVVFGGFA+ L R++ A PK+I++A G+ KV+ YK +L+
Sbjct: 120 EAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLD 179
Query: 206 EALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPV---EANDPLYI 262
A+ + P + ++ R + L PG D+ + AL + VPV E+N+P YI
Sbjct: 180 AAIAEAQHPPPHVLLVDRG-LAPMRLIPGRDVDY-AALRTQHEDAQVPVEWLESNEPSYI 237
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322
LYTSGTTGK PKG+ R VGG+ LA +M I+ + V ++ASD+GW
Sbjct: 238 LYTSGTTGK------------PKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGW 285
Query: 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382
VVGHSYI Y PL AG +V+YEG P PDP ++ ++ + V +F+APTA+RV++++
Sbjct: 286 VVGHSYIVYAPLLAGAATVLYEGLPTN-PDPGVWWSIVERYGVRTMFSAPTAIRVLKKQ- 343
Query: 383 KDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGY 442
D+ ++ SL +LF+AGE D T +W +++++WQTETG + A G
Sbjct: 344 -DAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGL 402
Query: 443 QHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFT 501
D P K S GLP GY +R+L E AT
Sbjct: 403 --DLKPVKLGSPGLPMYGYH------------------LRVLDE-----------AT--- 428
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG-YYDTMD 560
G C P+E G + V PLPPG +ST++ RF+K Y++ F Y + D
Sbjct: 429 ----------GRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFD 478
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPF 620
G DE+GY ++ R DDVINVAGHRL T +E+ V SHP V + AV+GV + KG++
Sbjct: 479 WGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVA- 537
Query: 621 CLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKE 680
+ F+ L + P + +
Sbjct: 538 ------------VVFAILKESDSAG--------------DAHDPHA----------VETG 561
Query: 681 LKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
+ + V +G +A V LP+TRSGK R+SI +A +
Sbjct: 562 MMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGR 605
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 477 bits (1230), Expect = e-162
Identities = 192/647 (29%), Positives = 284/647 (43%), Gaps = 135/647 (20%)
Query: 69 KWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA 128
KWF GG +N NA+DRH+E A+I D R++TY +L+ +V+ LA +L
Sbjct: 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDGLF-RELTYGDLRREVARLANALKD 59
Query: 129 IGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAA 188
+G GDRV IYMP PEA++++LAT R+GAI +VV G +A + R+ PKV+IA
Sbjct: 60 LGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIAD 119
Query: 189 SCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALA-QRL 247
K + + L ++ R + +D+A+
Sbjct: 120 DGTFRNGKEIALLEDADAVLSS-------VVVVPRL-----------GLWYDEAVEKASE 161
Query: 248 SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN 307
P+ A+DPL++LYTSGTTGK PKGI+ GG++ T +
Sbjct: 162 KFEFEPLPADDPLFLLYTSGTTGK------------PKGIVHSHGGYLVEHRLTAKFHGD 209
Query: 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNG 367
+ D +W +SD GW+ G Y + PLA+G T+V+Y+G+P P + + + +KV
Sbjct: 210 LLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPF--YSPERLWEALEKYKVTI 267
Query: 368 LFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWW 427
T+PT LR + + G Y SLR L AGE + E W + V +L+ +
Sbjct: 268 FGTSPTFLRRLMKLGL----GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYG 323
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
QTETG + + S+GLP PGY
Sbjct: 324 QTETGM----GFIAGRPPVKNG--SSGLPLPGY--------------------------- 350
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
VR + ++G+ P G +VV+LP PG T + P+R+ +
Sbjct: 351 ----------------AVRRVDDEGNPVPPGV-GELVVRLPW-PGMALTYWNDPERYKEA 392
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
Y F +Y T D DE+GY ++ R DDVI V+G R+ +E V+L+HP V + AV
Sbjct: 393 Y---FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAV 449
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
+GVP+P KG+I VL P
Sbjct: 450 VGVPDPGKGQIVLAFV---------------------------------VLAAGVEP--- 473
Query: 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714
E+ +E++ V IGP A + V LP+T SGK R
Sbjct: 474 -------NELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQR 513
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 351 bits (901), Expect = e-111
Identities = 233/729 (31%), Positives = 344/729 (47%), Gaps = 135/729 (18%)
Query: 9 SLDFSGNKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWD------RILDN 62
S DFS + +S Q +Y + Y++S++ P FW+D+ + W +KW+ LD
Sbjct: 17 SKDFSAQAL--VSSPQ--QYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDV 72
Query: 63 SDQPFT-KWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSL 121
P + +WF GG+ N CYN +DR+VE G K+A+ + +TY+EL ++V
Sbjct: 73 RKGPISIEWFKGGKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQ 132
Query: 122 LAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAK 181
LA L +GV GD V+IY+P++ E ++MLA R+GA+HSVVF GF+A L R+ K
Sbjct: 133 LANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCK 192
Query: 182 PKVIIAASCGVEPNKVVRYKTILNEALEISS---CKPDYCIIFQRRCV---EEAELTPGY 235
PKV+I + K + K I++ AL+ S+ C+ ++ + E+ + G
Sbjct: 193 PKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGR 252
Query: 236 DILWDDALAQRLSHRCVP-VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH 294
D+ W D + + V V+A DPL++LYTSG+TGK PKG+L GG+
Sbjct: 253 DVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGK------------PKGVLHTTGGY 300
Query: 295 IATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPS 354
+ A T ++ DV+W +D GW+ GHSY+ YGP+ G T +++EG P+ PD
Sbjct: 301 MVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPN-YPDSG 359
Query: 355 QYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWA 414
+ + ++ +KV +TAPT +R + R+ + ++S SLR L GE + W
Sbjct: 360 RCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV--TRHSRKSLRVLGSVGEPINPSAWRWF 417
Query: 415 EKSFNVT------MLNHWWQTET-GHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNI 467
FNV + + WWQTET G IT P PG
Sbjct: 418 ---FNVVGDSRCPISDTWWQTETGGFMIT-------------------PLPG-------- 447
Query: 468 VMLNWLDGRAHCVRILPESLRKNVPKGQNATH-FTSVEVRIIRNDGSECEPHELGRIVVK 526
W P+ K +AT F V+ I+ G E E G + VK
Sbjct: 448 ---AW-----------PQ-------KPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVK 486
Query: 527 LPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHR 586
PG TLY +R+ YF F GYY + D D++GY ++T R DDVINV+GHR
Sbjct: 487 KSW-PGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHR 545
Query: 587 LSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLER 646
+ T+ +E ++SHP + AV+G+ KG+ G+ F L
Sbjct: 546 IGTAEVESALVSHPQCAEAAVVGIEHEVKGQ-------------------GIYAFVTL-- 584
Query: 647 PTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPR 706
V PY EE+ K L VR IG AA GLP+
Sbjct: 585 ----------VEGVPY-----------SEELRKSLILTVRNQIGAFAAPDKIHWAPGLPK 623
Query: 707 TRSGKTARK 715
TRSGK R+
Sbjct: 624 TRSGKIMRR 632
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 320 bits (822), Expect = 1e-99
Identities = 198/713 (27%), Positives = 323/713 (45%), Gaps = 128/713 (17%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATWSKKWDRILD---NSDQPFTKWFVGGEINACYNAID 84
Y + + PESFW +V A WD++ D + D+ + WF GGE+N CYN +D
Sbjct: 10 YENDSNYANSNPESFWDEV---AKKYVHWDKMYDKVYSGDEIYPDWFKGGELNTCYNVLD 66
Query: 85 RHVERGMAK-KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL 143
HV+ + + + ALI++ P K K+TY +L E+V + L + +S D VLIYM
Sbjct: 67 IHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMAN 126
Query: 144 IPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI 203
E +++ML+ R+GA H V+F G++ + L R+E PK+II + G+ ++++ +
Sbjct: 127 TLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPN 186
Query: 204 LNEALEISSCKPDYCII-FQRRCVEEAELTPGYDIL-------WDDALA------QRLSH 249
L EA+E+S+ KP I F+ E++L I W D + Q +
Sbjct: 187 LKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFY 246
Query: 250 RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG 309
VPVE++ PLYILYTSGTTG K ++R G H+ L + I
Sbjct: 247 EYVPVESSHPLYILYTSGTTGN------------SKAVVRSNGPHLVGLKYYWRSIIEKD 294
Query: 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG---KPDRTPDPSQYYRVIHNHKVN 366
V ++ S +GWV H ++ YG L+ G T VM+EG K D + I HKV
Sbjct: 295 IPTVVFSHSSIGWVSFHGFL-YGSLSLGNTFVMFEGGIIKNKHIED--DLWNTIEKHKVT 351
Query: 367 GLFTAPTALRVIRREDKDST-LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH 425
T P +R + + D ++T + ++Y +L+ ++ GE + + E +
Sbjct: 352 HTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRG 411
Query: 426 WWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPE 485
+ QTE G + Y H + P +TG+P
Sbjct: 412 YGQTEIG---ITYLYCYGHINI-PYNATGVPSI--------------------------- 440
Query: 486 SLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545
++ I+ DG E +E+G + KLP+PP +T YK ++F
Sbjct: 441 ----------------FIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFK 484
Query: 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDT 605
++ F+KFPGYY++ D G+ DENGY + +R DD I ++G+++ + +E +L HP V +
Sbjct: 485 QL-FSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLEC 543
Query: 606 AVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLI-KPYGP 664
IG+ +P PI +L+ K
Sbjct: 544 CSIGIYDPD-----------------------------------CYNVPIGLLVLKQDQS 568
Query: 665 ISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717
SI ++ E+ ++ + I +A + V LP+T++GK R+ I
Sbjct: 569 NQSI----DLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQII 617
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 287 bits (736), Expect = 8e-90
Identities = 128/498 (25%), Positives = 196/498 (39%), Gaps = 87/498 (17%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY EL E+ + LA +L A+GV GDRV I +P PE +V++LA ++ GA + + A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
L LE ++ KV+I + V K ++ AL I +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD----------------D 104
Query: 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRP 290
+ + PV+ +D YI+YTSGTTGK PKG++
Sbjct: 105 GEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGK------------PKGVMLT 152
Query: 291 VGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRT 350
+A A D V G + +GPL AG T V+
Sbjct: 153 HRNLLALAAGLAERFGLTPGDRVLLLLP--LHFDGSVWEIFGPLLAGGTLVLVPKFTL-- 208
Query: 351 PDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET 410
DP++ +I +KV L+ PT LR++ + ++ +Y SLR + GE E
Sbjct: 209 -DPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEE----KKYDLSSLRLVLSGGEPLPPEL 263
Query: 411 KNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVM 469
+ F V ++N + TET TA+ G D S G P PG
Sbjct: 264 LRRLRERFGGVPLVNGYGPTETTVVATANLPG---DPEVKPGSIGRPLPG---------- 310
Query: 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPL 529
VEV+++ +G P E+G + ++
Sbjct: 311 ---------------------------------VEVKVLDEEGEPVPPGEVGELCIRG-- 335
Query: 530 PPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLST 589
PG P+ + + G Y T D G +DE+GY+ + R DD + + G R+
Sbjct: 336 -PGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEP 394
Query: 590 SALEDVVLSHPDVGDTAV 607
+E V+L HP V + AV
Sbjct: 395 GEIEAVLLEHPGVAEAAV 412
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 277 bits (712), Expect = 2e-84
Identities = 181/656 (27%), Positives = 281/656 (42%), Gaps = 150/656 (22%)
Query: 70 WFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI 129
W G++N Y AIDRH + G KVAL + K TY EL+E + A L +
Sbjct: 36 WLETGKVNIAYEAIDRHADGGRKDKVALRYLDA--SRKEKYTYKELKELSNKFANVLKEL 93
Query: 130 GVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAAS 189
GV GDRV I+MP IPE ++L ++ GAI +F F + RLE ++ KV+I +
Sbjct: 94 GVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLIT-T 152
Query: 190 CGVEPNKVVR----YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWD-DALA 244
+ K K +L E+ E PG D +AL
Sbjct: 153 PALLERKPADDLPSLKHVL-------------------LVGEDVEEGPGT---LDFNALM 190
Query: 245 QRLSHR--CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLA 299
++ S + D + YTSG+TGKP KG+L + H T
Sbjct: 191 EQASDEFDIEWTDREDGAILHYTSGSTGKP------------KGVLHVHNAMLQHYQTGK 238
Query: 300 WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRV 359
+ + ++ +DDV+W +D GWV G SY + P G T+V+ G+ P ++YR+
Sbjct: 239 YVL----DLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGR----FSPERWYRI 290
Query: 360 IHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN 419
+ ++KV +TAPTA+R++ D L +Y SLR++ GE + E W K F
Sbjct: 291 LEDYKVTVWYTAPTAIRMLMGAGDD--LVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG 348
Query: 420 VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHC 479
+ + ++WW TETG + A+ Y + P S G P PG
Sbjct: 349 LPIHDNWWMTETGGIMIAN---YPAMDIKPG-SMGKPLPG-------------------- 384
Query: 480 VRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYK 539
+E I+ + G+E P+ +G + +K P M ++
Sbjct: 385 -----------------------IEAAIVDDQGNELPPNRMGNLAIKKGW-PSMMRGIWN 420
Query: 540 APQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSH 599
P+++ YF +Y + D+ Y DE+GY + R DDVI +G R+ +E ++ H
Sbjct: 421 NPEKYES-YF--AGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEH 477
Query: 600 PDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLI 659
P V + VIG P+P +GEI IK + L + G+
Sbjct: 478 PAVAEAGVIGKPDPVRGEI-----IKAFVAL-RPGYEP---------------------- 509
Query: 660 KPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715
EE+ +E++ V++ +G AA + LP+TRSGK R+
Sbjct: 510 --------------SEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRR 551
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 270 bits (693), Expect = 1e-82
Identities = 174/624 (27%), Positives = 254/624 (40%), Gaps = 165/624 (26%)
Query: 106 SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVF 165
S+R TY+EL +V+ LA LAA+G+ GDRV IYMP+IPEA+V++LA ++GAI +F
Sbjct: 4 SVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIF 63
Query: 166 GGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC 225
GF + RL+ A+ KV+I A F RR
Sbjct: 64 SGFGPDAVATRLQDAEAKVLITAD------------------------------GFLRR- 92
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPK 285
+ V ++ +DP I+YTSGTTGK PK
Sbjct: 93 -----------------------GKRVDLK-DDPAMIIYTSGTTGK------------PK 116
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
G + G A + +++ D +DMGW++G ++ G L G T V+YEG
Sbjct: 117 GTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMG-PWLVLGGLLLGATIVLYEG 175
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
PD PDP + +R++ HKV L +PT +R +R + SLR L GE
Sbjct: 176 APDY-PDPDRLWRIVERHKVTHLGLSPTLIRALR--AHGDAPVEGHDLSSLRVLGSTGEP 232
Query: 406 CDHETKNWAEKSF---NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDG 462
D E+ W + ++N+ TE I LG P
Sbjct: 233 WDPESWLWLFERVGGGRAPIINYSGGTEISGGI----LG--------------NVP---- 270
Query: 463 KYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGR 522
I P S P G +A ++ DG E+G
Sbjct: 271 ----------------IRPIKPCSFNGPSP-GMDAD--------VVDEDGRPVRG-EVGE 304
Query: 523 IVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINV 582
+VV+ P PG ++ P+R+++ Y+++FPG + D DE+GY Y+ R DD I V
Sbjct: 305 LVVRAP-WPGMTRGFWRDPERYLETYWSRFPGVWVHGDWALVDEDGYWYILGRSDDTIKV 363
Query: 583 AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFG 642
AG R+ + +E V+ SHP V + A IGVP+P KGE C
Sbjct: 364 AGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFV------------------- 404
Query: 643 KLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVT 702
VL P + EL + V +A+G + V+
Sbjct: 405 --------------VLKPGVTP---------SAALEAELADHVGDALGKPFRPREVHFVS 441
Query: 703 GLPRTRSGKTARKSIVDMARNKPL 726
LP+TR+GK R+ I +P
Sbjct: 442 DLPKTRNGKIMRRVIRAAYLGQPP 465
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 236 bits (603), Expect = 2e-71
Identities = 115/454 (25%), Positives = 165/454 (36%), Gaps = 118/454 (25%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317
DP +ILYTSGTTGKP KG++ +A I + DV +
Sbjct: 1 DPAFILYTSGTTGKP------------KGVVLSHRNLLANAQALAQAIGL-TEGDVLLSV 47
Query: 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
+ VVG G L AG T V+YEG P P + +I ++V LF PT
Sbjct: 48 LPLFHVVGGGSGLLGALLAGGTVVLYEGF----PFPLSFLELIEQYRVTVLFGVPTLYDA 103
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITA 437
+ + +D Y SLR L GE E E+ +L + TET +
Sbjct: 104 LAKAAEDRG----YDLSSLRLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTST 159
Query: 438 HCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
+ + G P PG
Sbjct: 160 -NPDSELKKPG---TVGRPVPG-------------------------------------- 177
Query: 498 THFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557
VEVR++ +G P E+G +VV+ P M + G+Y
Sbjct: 178 -----VEVRVVDEEGKPLPPGEVGELVVR---GPWVMKGYWN--NPPETTAAATEDGWYR 227
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
T D GY DE GY+Y+T R D+I V G + + +E V+L HP V + AV+GVP+ +GE
Sbjct: 228 TGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGE 287
Query: 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEI 677
++ VL +P +
Sbjct: 288 RI-VAFV--------------------------------VL-RPGADALA---------- 303
Query: 678 GKELKELVREAIGPIAAFKLSTSVTGLPRTRSGK 711
+ELK +RE + P ++ V LP+T SGK
Sbjct: 304 -EELKAHLRERLAPYKVPRVIEFVDELPKTASGK 336
Score = 33.0 bits (76), Expect = 0.56
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 119 VSLLAGSLAAIGVSAGDRVLIYMPL--IPEAIVSMLATVRLGAIHSVVFGGF-AARELCA 175
++ AIG++ GD +L +PL + +L + G V++ GF
Sbjct: 26 LANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGALLAGG-TVVLYEGFPFPLSFLE 84
Query: 176 RLEHAKPKVIIA 187
+E + V+
Sbjct: 85 LIEQYRVTVLFG 96
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 209 bits (534), Expect = 2e-60
Identities = 125/495 (25%), Positives = 187/495 (37%), Gaps = 126/495 (25%)
Query: 233 PGYDILWDDALAQRLSH---RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILR 289
PG L + RL R + A+DP + +TSGTTG PK +L
Sbjct: 54 PGTTQLGPKDIRYRLERAGARAIVTSADDPALLYFTSGTTG------------LPKMVLH 101
Query: 290 PVG---GHIATLA-WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
GH+ T A W ++ DD+ WT +D GW G + P G +Y G
Sbjct: 102 THSYPLGHLVTGAYWL-----DLRPDDLHWTIADPGWAKGAWSSLFAPWLLGAAVFVYHG 156
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
R D + ++ + V PTA R++ ++D + Y LR++ AGE
Sbjct: 157 ---RRFDAERTLELLERYGVTTFCAPPTAYRMLLQQD-----LSSYDFSHLRHVVSAGEP 208
Query: 406 CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
+ E +W + + + + + QTETG + S G P PGY
Sbjct: 209 LNPEVIDWWRAATGLPIRDGYGQTETGLLVANF-----PGMEVKPGSMGRPAPGYR---- 259
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
V II ++G+E P E G I V
Sbjct: 260 ---------------------------------------VAIIDDEGNELPPGEEGDIAV 280
Query: 526 KL-PLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAG 584
++ P PPG K P++ T +Y T D DE+GY + R DDVI +G
Sbjct: 281 RVKPRPPGLFRGYLKDPEKTEA---TIRGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSG 337
Query: 585 HRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKL 644
+R+ +E ++ HP V + AV+G P+P +GE+ +K +
Sbjct: 338 YRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEV-----VKAFV---------------- 376
Query: 645 ERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGL 704
VL Y P EE+ KEL+E V++ P + V L
Sbjct: 377 ------------VLAPGYQP---------SEELAKELQEHVKKRTAPYKYPREIEFVEEL 415
Query: 705 PRTRSGKTARKSIVD 719
P+T SGK R +
Sbjct: 416 PKTVSGKIRRVELRA 430
Score = 61.6 bits (150), Expect = 6e-10
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
T+AEL+E+ A L +GV GDRV + +P +PE +L ++LGA+
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 170 ARELCARLEHAKPKVIIA 187
+++ RLE A + I+
Sbjct: 61 PKDIRYRLERAGARAIVT 78
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 208 bits (530), Expect = 9e-60
Identities = 165/605 (27%), Positives = 237/605 (39%), Gaps = 172/605 (28%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+YAEL+EQ + +A LA +GV GDRV +P PE +V++LAT R+GAI+ +F F
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGP 61
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
+ + RL H+ KV++ N R K
Sbjct: 62 KAIEYRLGHSGAKVVVT-------NAANRGK----------------------------- 85
Query: 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRP 290
L DD AQ +YTSGTTG PKG+ P
Sbjct: 86 -------LDDDLFAQ-----------------MYTSGTTGL------------PKGVPVP 109
Query: 291 VGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRT 350
+ A A+ M ++ DDV+W +D GW G Y GPLA GIT+V EG
Sbjct: 110 LNALAAFYAY-MRYAIDLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTVFLEG----G 164
Query: 351 PDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET 410
Y V+ V +PTA R++ D+ A LR AGE + E
Sbjct: 165 FTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADA---AARIKLKLRVASSAGEPLNPEV 221
Query: 411 KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVML 470
W + + VT+ +H+ QTETG + H H+ V S GLP PGY I +L
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNH-HALAHE-VRAG-SMGLPLPGYR-----IAVL 273
Query: 471 NWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP-L 529
+ +DG E G++ + +
Sbjct: 274 D--------------------------------------DDGQPLADGEPGQLAIDVASS 295
Query: 530 PPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLST 589
P S + P+ K +Y T D DE+GY + R DDVI AG+R+
Sbjct: 296 PLLWFSGYWDDPE---KTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGP 352
Query: 590 SALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTS 649
+E +L HP V + AV+GVP+P +GEI +K + L K G++G
Sbjct: 353 FDVESALLEHPAVAEAAVVGVPDPLRGEI-----VKAFVVL-KEGYAG------------ 394
Query: 650 LLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRS 709
+E+ +EL+ V++ + A + V LP+T S
Sbjct: 395 ------------------------SDELAEELQLFVKKRLSAHAYPREVEFVPALPKTPS 430
Query: 710 GKTAR 714
GK R
Sbjct: 431 GKIQR 435
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 209 bits (534), Expect = 2e-59
Identities = 158/658 (24%), Positives = 244/658 (37%), Gaps = 159/658 (24%)
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
R + ALI ++TY EL + + LA +L A+GV GDRV I +P
Sbjct: 18 ERAARRNPDRPALIFLGRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNS 73
Query: 145 PEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL 204
PE +++ LA +R GA+ + REL L A KV+I ++ + V
Sbjct: 74 PEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA----- 128
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRC--VPVEANDPLYI 262
EAL + + + I + A+ PV+ +D ++
Sbjct: 129 -EALPVV-----------LVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFL 176
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVWWTAS- 318
LYTSGTTG PKG++ R + + A +A + + DDV +
Sbjct: 177 LYTSGTTGL------------PKGVVLTHRNLLANAAGIAAALGG--GLTPDDVVLSWLP 222
Query: 319 ---DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTAL 375
G +VG PL G T V+ +P DP + +I +KV L PT L
Sbjct: 223 LFHIFGLIVGLL----APLLGGGTLVLLSPEP---FDPEEVLWLIEKYKVTVLSGVPTFL 275
Query: 376 -RVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGH 433
++ +KD + SLR + G E + + E+ + +L + TET
Sbjct: 276 RELLDNPEKD----DDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSP 331
Query: 434 SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493
+T P S G P PG
Sbjct: 332 VVTI-NPPDDLLAKPG--SVGRPLPG---------------------------------- 354
Query: 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP-LPPGTMSTLYKAPQRFMKIYFTKF 552
VEVRI+ DG E P E+G I V+ P + G + P+ + +
Sbjct: 355 ---------VEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGY----WNRPEATAEAFDE-- 399
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
G+ T D GY DE+GY+Y+ R D+I G + +E V+ HP V + AV+GVP+
Sbjct: 400 DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPD 459
Query: 613 PTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTR 672
GE + + D
Sbjct: 460 ERWGERV-VAVVVLKPGGD----------------------------------------- 477
Query: 673 SDEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNKPLR 727
E +EL+ +R+ +A +K+ V LPRT SGK R+++ + R +P
Sbjct: 478 -AELTAEELRAFLRKR---LALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPRL 531
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 203 bits (519), Expect = 4e-58
Identities = 138/479 (28%), Positives = 194/479 (40%), Gaps = 127/479 (26%)
Query: 245 QRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWT 301
L R + DP + +TSGTTGKP KG+L R V H AT +
Sbjct: 80 PELYERT---DPEDPALLHFTSGTTGKP------------KGVLHVHRAVVAHYATARYV 124
Query: 302 MSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIH 361
+ ++ DDV+W +D GWV G SY PL G+T V+ EG+ D ++Y ++
Sbjct: 125 L----DLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFD----AERWYGILE 176
Query: 362 NHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVT 421
KV +TAPTALR++ R L A+Y SLR++ GE + E W EK +
Sbjct: 177 EEKVTVWYTAPTALRMLMRAG--PELAARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMP 234
Query: 422 MLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVR 481
+ + WWQTETG + A+ G V P S G P PG
Sbjct: 235 IHDTWWQTETGAIMIANYPGIP---VKPG-SMGRPLPG---------------------- 268
Query: 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSE----CEPHELGRIVVKLPLPPGTMSTL 537
+E +I DG P ++G + +K P P
Sbjct: 269 ---------------------IEAAVIERDGDGLTPVTGPGQVGELALK-PGWPSMFRGY 306
Query: 538 YKAPQRFMKIYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVV 596
+R+ F G+Y T D Y DE+GY + R DDVI AGH + +E +
Sbjct: 307 LGNEERYAS----SFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESAL 362
Query: 597 LSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIR 656
+ HP V + VIG P+P GEI +K + L + GF
Sbjct: 363 MEHPAVAEAGVIGKPDPVAGEI-----VKAFVSL-RPGFEP------------------- 397
Query: 657 VLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715
EE+ +EL R+ +G A + V LP+TRSGK R+
Sbjct: 398 -----------------SEELRRELLTFARQRLGAAVAPREIHFVDNLPKTRSGKIMRR 439
Score = 67.8 bits (166), Expect = 8e-12
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+Y EL+E + A LA++GV G+RV +P PE V+ L T++LGA++ +F F
Sbjct: 2 SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 171 RELCARLEHAKPKVIIA 187
+ RLE + KV+I
Sbjct: 62 EPIRDRLELGEAKVLIT 78
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 162 bits (412), Expect = 2e-43
Identities = 123/495 (24%), Positives = 190/495 (38%), Gaps = 139/495 (28%)
Query: 241 DALAQRLSHR----CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGG 293
DA+ RL V ++DP ++YTSGTTG PKG L R + G
Sbjct: 68 DAVEHRLRDSGARVLVTDGSDDPAILIYTSGTTG------------PPKGALHGHRVLLG 115
Query: 294 HIAT--LAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGK---PD 348
H+ L + ++ DV+WT +D W+ G + L G+ V Y + P+
Sbjct: 116 HLPGVELYFELA----PRPGDVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPE 171
Query: 349 RTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDH 408
R + ++ + V F PTAL+++RR + A+Y LR + GE
Sbjct: 172 RA------FALMRRYGVTNAFLPPTALKMMRRVGSER---ARYDLR-LRAVASGGESLGE 221
Query: 409 ETKNWAEKSFNVTMLNHWWQTETGHSITAHC--LGYQHDTVPPKY-STGLPFPGYDGKYV 465
E WA +T+ + QTE + + +C LG P + S G P PG+
Sbjct: 222 ELLEWARDELGLTVNEFYGQTEA-NLVVGNCAALG------PARPGSMGKPVPGH----- 269
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
EV ++ + G P E+G I V
Sbjct: 270 --------------------------------------EVAVVDDAGRPVPPGEVGEIAV 291
Query: 526 KLPLPPGTMSTLYKAPQRFMKIYFTKFPG-YYDTMDAGYYDENGYIYVTARDDDVINVAG 584
K P P + P+ KF G + T D G D +GY++ R DDVI +G
Sbjct: 292 KRP-DPVMFLGYWNNPEATAA----KFAGDWLLTGDLGRRDADGYLWFKGRADDVIKSSG 346
Query: 585 HRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKL 644
+R+ + +E+ +L HP V + AV+GVP+P +GEI +K + L G
Sbjct: 347 YRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEI-----VKAFVVL-AEGVEP------- 393
Query: 645 ERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGL 704
+E+ EL+ELV+ + + V L
Sbjct: 394 -----------------------------SDELATELQELVKSRLAAHEYPREIEFVDEL 424
Query: 705 PRTRSGKTARKSIVD 719
P T +GK R+ +
Sbjct: 425 PMTTTGKIRRRELRR 439
Score = 63.9 bits (156), Expect = 1e-10
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 106 SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIH---S 162
+ + T+ +L++ + LA +L +GV GDRV +Y+P PE ++ LA +LGA+ S
Sbjct: 3 TREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLS 62
Query: 163 VVFGGFAARELCARLEHAKPKVII 186
V+FG A + RL + +V++
Sbjct: 63 VLFGPDA---VEHRLRDSGARVLV 83
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 164 bits (418), Expect = 5e-43
Identities = 104/399 (26%), Positives = 162/399 (40%), Gaps = 64/399 (16%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATW-------SKKWDRILDNSDQPFTKWFVGGEINACY 80
Y+ +R S+E +FW V W SK + +LD P +WF G +N
Sbjct: 8 YHALWRWSVEDLAAFWESV-----WDFFDVIGSKGYVVVLDGDIMPGARWFPGARLNYAE 62
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
N + RH + A+ R++++AEL+ QV+ LA +L +GV GDRV Y
Sbjct: 63 NLL-RHAD---NDPAAIYAAGE-DGERREISWAELRSQVARLAAALRDLGVKPGDRVAGY 117
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+P +PEA+++MLAT +GAI S F + R +PKV+ A G N
Sbjct: 118 LPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVD-GYVYNG---- 172
Query: 201 KTI--LNEALEISSCKP--------DYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHR 250
K + EI P Y A +LW A +
Sbjct: 173 KEHDRREKIAEIVKGLPSLEAVVVVPYLSS---DAQPAALKFSALTLLWSLAGDRAAPLE 229
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGG----HIATLAWTMSVIY 306
+ + PL+ILY+SGTTG PK I+ GG H+
Sbjct: 230 FERLPFDHPLWILYSSGTTGL------------PKCIVHGAGGTLLQHLKEHGLHC---- 273
Query: 307 NMGQDDV--WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHK 364
++ D ++T + GW++ + + L +G T V+Y+G P PDP +R+
Sbjct: 274 DLRPGDRLFYYTTT--GWMMWNWLV--SGLLSGATLVLYDGSPLY-PDPDVLWRLAAKLG 328
Query: 365 VNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
+ T+ L + + + G + SLR + G
Sbjct: 329 ITIFGTSAKYLDALEKAGIE--PGRTHDLSSLRTILSTG 365
Score = 48.8 bits (117), Expect = 8e-06
Identities = 48/202 (23%), Positives = 73/202 (36%), Gaps = 59/202 (29%)
Query: 519 ELGRIVVKLPLPPGTMSTLY---KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575
E+G +V P P +M + R+ YF FPG + D +G + + R
Sbjct: 435 EVGELVCTKPFP--SMPLYFWNDPDGSRYRDAYFDTFPGVWRHGDWIKITPHGGVIIYGR 492
Query: 576 DDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635
D +N G R+ T+ + VV P+V D+ V+G E R+PL
Sbjct: 493 SDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDE---------RMPL----- 538
Query: 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP---- 691
F KL +L D+ + K ++ +R A+ P
Sbjct: 539 -----FVKLREGVTL-----------------------DDALVKRIRSAIRAALSPRHVP 570
Query: 692 --IAAFKLSTSVTGLPRTRSGK 711
I A V +P T SGK
Sbjct: 571 AEIIA------VPDIPYTLSGK 586
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 161 bits (410), Expect = 2e-42
Identities = 156/651 (23%), Positives = 243/651 (37%), Gaps = 144/651 (22%)
Query: 77 NACYNAIDRHVERGMAK----KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVS 132
N Y+ +D A K+ALI + + T+ +L++ + A A+G+
Sbjct: 17 NFAYDVVDA-----YADEEPDKLALIWCDDDGEE-KIFTFGDLKDYSNKAANFFKALGIG 70
Query: 133 AGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGV 192
GD V++ + E SMLA ++GAI A+++ R+E A K+I+
Sbjct: 71 KGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDG 130
Query: 193 EPNKV---VRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH 249
P + + + P+ I F + +
Sbjct: 131 VPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENASPDFER-------------PT 177
Query: 250 RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLA-WTMSVIYNM 308
+D L + +TSGTTG P+ + D P+G HI T W N+
Sbjct: 178 GNDATCNDDILLVYFTSGTTGMPK----MVEHDH----TYPLG-HIVTAKYW-----QNV 223
Query: 309 GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGL 368
+ + T +D GW YG AG +Y+ DP I + V
Sbjct: 224 KEGGLHLTVADTGWGKAVWGKLYGQWIAGAAVFVYDYD---KFDPKNLLEKIEKYGVTTF 280
Query: 369 FTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQ 428
PT R + +ED ++Y SLRY AGE + E N ++ + ++ + Q
Sbjct: 281 CAPPTIYRFLIKEDL-----SKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLMEGFGQ 335
Query: 429 TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLR 488
TET +I P S G P PGYD
Sbjct: 336 TETTLTI-----ATFPWMEPKPGSMGKPSPGYD--------------------------- 363
Query: 489 KNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP--LPPGTMSTLYKAPQRFMK 546
+ II DG CE E G IV++ P G Y+ P+R +
Sbjct: 364 ----------------IDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAE 407
Query: 547 IYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTA 606
++ GYY T D + DE+GY++ R DD+I +G+R+ +E ++ HP V + A
Sbjct: 408 VWHD---GYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECA 464
Query: 607 VIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPIS 666
V GVP+P +G++ +K I VL K Y P
Sbjct: 465 VTGVPDPIRGQV-----VKATI----------------------------VLTKGYEP-- 489
Query: 667 SIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717
EE+ KEL++ V++ P ++ V LP+T SGK R I
Sbjct: 490 -------SEELKKELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEI 533
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 156 bits (396), Expect = 1e-40
Identities = 132/543 (24%), Positives = 203/543 (37%), Gaps = 141/543 (25%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI-HSV-VF 165
R+ TYAEL E+V+ LA +L A+GV GDRV ++ E + + A ++GA+ H + +
Sbjct: 30 RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIR 89
Query: 166 GGFAARELCARLEHAKPKVIIAAS------CGVEPN-KVVRYKTILNEALEISSCKPDYC 218
E+ L A+ +V++ S + P VR I+
Sbjct: 90 --LKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVR-TVIVEGD----------- 135
Query: 219 IIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVP-VEANDPLYILYTSGTTGKPQGCSE 277
A +++ LA P ++ ND +LYTSGTTG P
Sbjct: 136 --------GPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHP----- 182
Query: 278 LRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV---GHSY---ICY 331
KG+ V H +++V + + D+ V+ H + + Y
Sbjct: 183 -------KGV---VLSHRNLFLHSLAVCAWLK-----LSRDDVYLVIVPMFHVHAWGLPY 227
Query: 332 GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQY 391
L AG V+ P R DP +I +V F PT +++ + + +
Sbjct: 228 LALMAGAKQVI----PRRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY--FVDF 280
Query: 392 STDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPK- 450
S SLR + G ++ F + ++ + TET ++ D +P +
Sbjct: 281 S--SLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSV---LPPEDQLPGQW 335
Query: 451 ---YSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRI 507
S G P PG VE RI
Sbjct: 336 TKRRSAGRPLPG-------------------------------------------VEARI 352
Query: 508 IRNDGSECEPH--ELGRIVVKLP--------LPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557
+ +DG E P E+G I+V+ P P T T+ G+
Sbjct: 353 VDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG--------------GWLH 398
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
T D GY DE+GY+Y+T R DVI G + LED + HP V + AVIGVP+ GE
Sbjct: 399 TGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGE 458
Query: 618 IPF 620
P
Sbjct: 459 RPV 461
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 152 bits (386), Expect = 1e-38
Identities = 117/404 (28%), Positives = 167/404 (41%), Gaps = 75/404 (18%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATW-------SKKWDRILDNSDQPFTKWFVGGEINACY 80
Y +R S+E E+FW V W S + +L P +WF G +N
Sbjct: 36 YAALWRWSVEDLEAFWQSV-----WDFFGVIGSTPYTVVLAGRRMPGARWFPGARLNYAE 90
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
N + RH + A+I R++++AEL+ QV+ LA +L A+GV GDRV Y
Sbjct: 91 NLL-RH---RRDDRPAIIFRGE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAY 145
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+P IPE +V+MLAT LGAI S F + + R +PKV+IA G RY
Sbjct: 146 LPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVD-G------YRY 198
Query: 201 --KTI--LNEALEISSCKP---DYCIIFQRRCVEEAELTPGYDILWDDALAQR--LSHRC 251
K + E+ + P ++ A PG +LW+D LA
Sbjct: 199 GGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPG-ALLWEDFLAPAEAAELEF 257
Query: 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGG----HIATLAWTMSVIYN 307
PV + PL+ILY+SGTTG PK I+ GG H+ L +
Sbjct: 258 EPVPFDHPLWILYSSGTTGL------------PKCIVHGHGGILLEHLKELGLHC----D 301
Query: 308 MGQDDV--WWTASDMGW------VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRV 359
+G D W+T GW V G L G T V+Y+G P PDP+ + +
Sbjct: 302 LGPGDRFFWYTTC--GWMMWNWLVSG--------LLVGATLVLYDGSPFY-PDPNVLWDL 350
Query: 360 IHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
V T+ L + G + +LR + G
Sbjct: 351 AAEEGVTVFGTSAKYLDACEKA--GLVPGETHDLSALRTIGSTG 392
Score = 35.5 bits (83), Expect = 0.12
Identities = 40/170 (23%), Positives = 60/170 (35%), Gaps = 54/170 (31%)
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
YF FPG + D E+G + + R D +N G R+ T+ + V + P+V D+ V
Sbjct: 492 YFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLV 551
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
IG P R+PL F L +L
Sbjct: 552 IGQEWPDGDV---------RMPL----------FVVLAEGVTL----------------- 575
Query: 668 IYCTRSDEEIGKELKELVREAIGP------IAAFKLSTSVTGLPRTRSGK 711
D+ + ++ +R + P I A V +PRT SGK
Sbjct: 576 ------DDALRARIRTTIRTNLSPRHVPDKIIA------VPDIPRTLSGK 613
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 146 bits (371), Expect = 1e-37
Identities = 128/533 (24%), Positives = 198/533 (37%), Gaps = 105/533 (19%)
Query: 96 ALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155
ALI + ++T+A+L ++ LA L +G+ GD V + P E L +
Sbjct: 1 ALIDAD----TGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCL 56
Query: 156 RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKP 215
G I S + EL +L+ +KPK+I ++ V+ EA P
Sbjct: 57 AAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELD---KVK------EAA--KELGP 105
Query: 216 DYCIIFQRRCVEEAELTPGY-DILWDDALAQRLSHRCVPVE--ANDPLYILYTSGTTGKP 272
II ++ A + L + L R P+ +D +LY+SGTTG P
Sbjct: 106 VVRII----VLDSAPDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLP 161
Query: 273 QGCSELRSEDQPKGILRPVGGHIATL--AWTMSVIYNMGQDDVWWTASDMGWVVG-HSYI 329
+G L ++ IA L +DV T G + +
Sbjct: 162 KGV-MLSHKNI-----------IANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTL 209
Query: 330 CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT-ALRVIRREDKDSTLG 388
L G T ++ D + ++I +KV LF P A+ + + D
Sbjct: 210 AS--LLCGATVIIM-----PKFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVDK--- 259
Query: 389 AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH-WWQTETGHSITAHCLGYQHDTV 447
Y SLR +F E + K F T + + TETG T
Sbjct: 260 --YDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETG-PATTLTPP------ 310
Query: 448 PPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRI 507
G PG R++P +VE +I
Sbjct: 311 ------GDEKPG------------------SVGRLVP-----------------NVEAKI 329
Query: 508 IRNDGSEC-EPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566
+ DG + P+E G + VK P M P+ K + G+ T D GY+DE
Sbjct: 330 VDEDGGKSLGPNERGELCVK---GPQIMKGYLNNPEA-TKETIDE-DGWLHTGDIGYFDE 384
Query: 567 NGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
+G Y+ R ++I G+++ + LE V+L HP V D AVIG+P+ GE+P
Sbjct: 385 DGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELP 437
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 143 bits (362), Expect = 3e-36
Identities = 141/648 (21%), Positives = 239/648 (36%), Gaps = 155/648 (23%)
Query: 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDR 136
NA +DRH+ G K+AL +D +TY ELQE+V+ +L +G+ +R
Sbjct: 4 NAAVYFLDRHLNEGRGDKIALYYD------DGSLTYGELQEEVNRWGNALRELGIERENR 57
Query: 137 VLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNK 196
VL+ + PE + +++GA+ + + L ++ +V++ + E
Sbjct: 58 VLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWE--- 114
Query: 197 VVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEA 256
V++ + L + I+ Y L A + + A
Sbjct: 115 VLKPALQKDPHLR-------HVIVVG----GAGPGALSYAQLIATAAEELEA---AATSA 160
Query: 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGIL--RPVGGHIATLAWTMSVIYNMGQDDVW 314
+D + LY+SG+TG+P+G L + + V G + +DDV
Sbjct: 161 DDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLG--------------ITEDDVV 206
Query: 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA 374
++A+ + + G Y PL+ G T+V+ +P TPD + I +K F PT
Sbjct: 207 FSAAKLFFAYGLGNGLYFPLSVGATTVLMPERP--TPD--AVFATIERYKPTVFFGVPTL 262
Query: 375 L-RVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETG 432
++ +K + SLR AGE E W E F + +L+ TE
Sbjct: 263 YAAMLAAPEK-----PERDLSSLRLCVSAGEALPAEIGYRWKEL-FGLEILDGIGSTEML 316
Query: 433 H---SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRK 489
H S + Y ++G P PGY
Sbjct: 317 HIFLSNRPGAVKYG--------TSGKPVPGY----------------------------- 339
Query: 490 NVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYF 549
EV+++ DG E E+G + V+ + + + ++
Sbjct: 340 --------------EVKLVDEDGEEVADGEIGELWVR---GDSSAAGYWNRREKTR---- 378
Query: 550 TKFPG-YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
F G + T D Y DE+GY + R DD++ V+G +S +ED +L HP V + AV+
Sbjct: 379 ETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVV 438
Query: 609 GVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSI 668
G + L +P + + VL Y P
Sbjct: 439 GAEDED----------------------------GLTKPKAFV-----VLKDGYQP---- 461
Query: 669 YCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKS 716
E+ ELK+ V++ + P + V LP+T +GK R
Sbjct: 462 -----SPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKIQRFK 504
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 133 bits (337), Expect = 3e-33
Identities = 120/531 (22%), Positives = 192/531 (36%), Gaps = 143/531 (26%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
RK+TYAEL E A L +GV GDRV + +P P+ ++ ++ GA+ V
Sbjct: 23 RKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPL 82
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ REL +L + KV+I A
Sbjct: 83 YTPRELEHQLNDSGAKVLIVA--------------------------------------- 103
Query: 228 EAELTPGYDILWDDALAQRLSHRC-VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
I ++DALA V + +D + YT GTTG PKG
Sbjct: 104 ---------ISFEDALASGAPLPLPVELSPDDLAVLQYTGGTTG------------VPKG 142
Query: 287 IL---RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMY 343
+ R + ++ +A + + +D + TA + + G + L G T+V+
Sbjct: 143 AMLTHRNLVANVQQIAAWVKDL--REGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLV 200
Query: 344 EGKPDRTPDPSQYYRVIHNHK------VNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397
P + I ++ V L+ A ++ + +Y SLR
Sbjct: 201 P-----NFRPINVLKEIKRYRFTIFPGVPTLYNA-----LLNHPEF-----KKYDFSSLR 245
Query: 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKY-STGLP 456
G E E+ ++ + TET T + K S GLP
Sbjct: 246 LCISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVN-----PLDGERKPGSIGLP 300
Query: 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE 516
PG EV+I+ ++G+E
Sbjct: 301 LPG-------------------------------------------TEVKIVDDEGNELP 317
Query: 517 PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576
P E+G +VV+ P M + P+ + G+ T D GY DE+GY Y+ R
Sbjct: 318 PGEVGELVVR---GPQVMKGYWNRPE---ETAEVLTDGWLRTGDIGYMDEDGYFYIVDRK 371
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627
D+I V G + +E+V+ SHP V + AV+GVP+P +GE ++ +
Sbjct: 372 KDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAV-KAFVVLK 421
>gnl|CDD|221322 pfam11930, DUF3448, Domain of unknown function (DUF3448). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 80 amino acids in length. This
domain is found associated with pfam00501. This domain
has a conserved DRH sequence motif. This domain has two
completely conserved residues (N and A) that may be
functionally important.
Length = 82
Score = 117 bits (295), Expect = 2e-31
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAID 84
+ Y + Y +SIE PE FW + W K WD++LD S+ PF KWFVGG++NA YN +D
Sbjct: 4 MEAYQELYEESIEDPEGFWAEQAEELDWFKPWDKVLDWSNAPFIKWFVGGKLNASYNCLD 63
Query: 85 RHVERGMAKKVALIHDS 101
RH+E G KVA+I +
Sbjct: 64 RHLETGRGDKVAIIWEG 80
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 124 bits (314), Expect = 4e-31
Identities = 101/366 (27%), Positives = 142/366 (38%), Gaps = 83/366 (22%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317
DP ILYTSGTTG+P KG++ + A ++ DV+ A
Sbjct: 2 DPALILYTSGTTGRP------------KGVMLTHRN-LLANAVNALAGVDLSPGDVYLLA 48
Query: 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTAL-R 376
+ + G + LAAG T V+ DP +I H+V F PT R
Sbjct: 49 APLYHAAGGLF-LLPALAAGGTVVL-----MPKFDPEAVLDLIERHRVTHTFLVPTMFQR 102
Query: 377 VIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSIT 436
++R D A+Y SLR + E K + F + + TETG T
Sbjct: 103 LLRLPDF-----ARYDLSSLRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETG--PT 155
Query: 437 AHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
L + S G P PG
Sbjct: 156 TTLLSPEDWLRKLG-SVGRPVPG------------------------------------- 177
Query: 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ---RFMKIYFTKFP 553
VEVRI+ DG E P E+G IVV+ P M+ + P+ ++
Sbjct: 178 ------VEVRIVDEDGRELPPGEVGEIVVR---GPAVMAGYWNRPEATAEALR------D 222
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+ T D GY DE+GY+Y+ R D+I G + + +E+V+L+HP V D AVIGVP+
Sbjct: 223 GWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDE 282
Query: 614 TKGEIP 619
GE
Sbjct: 283 EWGEAV 288
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 125 bits (315), Expect = 9e-31
Identities = 110/519 (21%), Positives = 172/519 (33%), Gaps = 132/519 (25%)
Query: 111 TYAELQEQVSLLAGSL-AAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
TY EL E+ + LA L AA GV GDRV + + E +V++LA ++ GA + + +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
A L LE A ++++ +
Sbjct: 61 AERLAFILEDAGARLLL--------------------------TDSALASRLAGLVLPVI 94
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILR 289
L P DDA A P +D Y++YTSG+TG+ PKG++
Sbjct: 95 LLDPLELAALDDAPA--PPPPDAPSGPDDLAYVIYTSGSTGR------------PKGVVV 140
Query: 290 PVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDR 349
+ LAW Y + DD + + + I +G L AG T V+ +R
Sbjct: 141 THRSLVNLLAWLARR-YGLDPDDRVLQFASLSFDASVEEI-FGALLAGATLVVPPEDEER 198
Query: 350 TPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHE 409
D + +I H V L P+ L ++ + SLR + + GE
Sbjct: 199 -DDAALLAALIAEHPVTVLNLTPSLLALLAAALPP-------ALASLRLVILGGEALTPA 250
Query: 410 T-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYST--GLPFPGYDGKYVN 466
W + ++N + TET ++ + D P + G P
Sbjct: 251 LVDRWRARGPGARLINLYGPTET--TVWSTATLVDPDDAPRESPVPIGRPLANTR----- 303
Query: 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHEL---GRI 523
+ +L + LR VP G EL G
Sbjct: 304 -------------LYVLDDDLRP-VPVG---------------------VVGELYIGGPG 328
Query: 524 V---------------VKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENG 568
V V P G + LY+ T D Y +G
Sbjct: 329 VARGYLNRPELTAERFVPDPFAGGDGARLYR------------------TGDLVRYLPDG 370
Query: 569 YIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
+ R DD + + G+R+ +E +L HP V + V
Sbjct: 371 NLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 124 bits (313), Expect = 1e-29
Identities = 96/360 (26%), Positives = 156/360 (43%), Gaps = 27/360 (7%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMA--TWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDR 85
Y +R S++ ++FW V +S R++D+ P +WF G +N N + R
Sbjct: 37 YDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDRTMPGAQWFPGARLNYAENLL-R 95
Query: 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP 145
L D T VT+AEL+ QV+ LA +L A+GV GDRV Y+P IP
Sbjct: 96 AAGTE---PALLYVDE--THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIP 150
Query: 146 EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV-RYKTIL 204
+A+V+MLAT +GAI S F AR + R + +PK++ K R +
Sbjct: 151 QAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVA 210
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCV--PVEANDPLYI 262
E+ + + I + EA G + +D A + V + + PL+I
Sbjct: 211 EVRKELPTLRAVVHIPYLGPRETEAPKIDG-ALDLEDFTAAAQAAELVFEQLPFDHPLWI 269
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322
L++SGTTG PK I+ GG + + ++G D + + GW
Sbjct: 270 LFSSGTTG------------LPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGW 317
Query: 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382
++ +++ G LA G T V+Y+G P P + + + T+ + R+
Sbjct: 318 MM-WNWLVSG-LATGATLVLYDGSP-GFPATNVLWDIAERTGATLFGTSAKYVMACRKAG 374
Score = 49.5 bits (118), Expect = 5e-06
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 47/214 (21%)
Query: 519 ELGRIVVKLPLPPGTMSTLY---KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575
E+G +V P+P +M + ++ YF +PG + D G I + R
Sbjct: 463 EVGELVCTNPMP--SMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGR 520
Query: 576 DDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635
D +N G R+ ++ + + V +V ++ IG +P G R+ L
Sbjct: 521 SDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGY---------RVVL----- 566
Query: 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAF 695
F L +L D+ + +K +R + P
Sbjct: 567 -----FVHLAPGATL-----------------------DDALLDRIKRTIRAGLSPRHVP 598
Query: 696 KLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVR 729
V G+P T +GK ++ + + P+
Sbjct: 599 DEIIEVPGIPHTLTGKRVEVAVKRVLQGTPVDNP 632
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 122 bits (307), Expect = 5e-29
Identities = 135/556 (24%), Positives = 204/556 (36%), Gaps = 126/556 (22%)
Query: 84 DRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL 143
D V K A+ T + R+ TY EL V +A LA +GV GD V +P
Sbjct: 31 DACVAS-CPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPN 89
Query: 144 IPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI 203
E V LA R+GA+ + + F REL L+HA+ KV++ ++
Sbjct: 90 WWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPK---------TFRGF 140
Query: 204 LNEAL--EISSCKPDYCIIFQRRCVEEAELTPGYDIL-----WD---DALAQRLSHRCVP 253
+ A+ + P + V + ++ L W+ DA A R P
Sbjct: 141 DHAAMARRLRPELPA----LRHVVVVGGDGADSFEALLITPAWEQEPDAPAILARLRPGP 196
Query: 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIY----NMG 309
+D ++YTSGTTG+P KG++ H A V Y +G
Sbjct: 197 ---DDVTQLIYTSGTTGEP------------KGVM-----HTANTLMANIVPYAERLGLG 236
Query: 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
DDV AS M G Y P+ G T+V+ + DP++ +I V F
Sbjct: 237 ADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQD-----IWDPARAAELIRTEGVT--F 289
Query: 370 T-APTA-----LRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTML 423
T A T R ++ + + SLR AG A + ++
Sbjct: 290 TMASTPFLTDLTRAVKESGRPVS--------SLRTFLCAGAPIPGALVERARAALGAKIV 341
Query: 424 NHWWQTETGHSITAHCLGYQHDTVPPKYST--GLPFPGYDGKYVNIVMLNWLDGRAHCVR 481
+ W TE G ++T L D + ST G P PG
Sbjct: 342 SAWGMTENG-AVTLTKL----DDPDERASTTDGCPLPG---------------------- 374
Query: 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAP 541
VEVR++ DG+ ++GR+ V+ K P
Sbjct: 375 ---------------------VEVRVVDADGAPLPAGQIGRLQVR---GCSNFGGYLKRP 410
Query: 542 QRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPD 601
Q T G++DT D D +GYI ++ R DVI G + +E ++ HP
Sbjct: 411 QL----NGTDADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPA 466
Query: 602 VGDTAVIGVPEPTKGE 617
+ A++ P+ GE
Sbjct: 467 IAQVAIVAYPDERLGE 482
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 119 bits (301), Expect = 7e-29
Identities = 122/498 (24%), Positives = 175/498 (35%), Gaps = 139/498 (27%)
Query: 233 PGYDILWDDALAQRLSH---RCV---PVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
P +L L R S + + A+DP+ + +TSGTTG P K
Sbjct: 54 PATTLLTPADLRDRFSRGKPKAIVADETRADDPILLYFTSGTTGLP------------KL 101
Query: 287 ILR-----PVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYIC-YGPLAAGITS 340
+L PVG H++T+ W + D+ S GW H++ + P AG T
Sbjct: 102 VLHTHVSYPVG-HLSTMYWI-----GLQPGDIHLNISSPGWA-KHAWSSFFAPWNAGATV 154
Query: 341 VMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLF 400
D +Y + V PT R+ ++D AQY LR
Sbjct: 155 FGIN---YPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQQDL-----AQYDV-RLREAV 205
Query: 401 VAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY 460
AGE + E +K++ +T+ + + QTET TA V P S G P PGY
Sbjct: 206 SAGEPLNPEVIERVKKAWGLTIRDGYGQTET----TAMIGNSPGQKVKPG-SMGRPLPGY 260
Query: 461 DGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHEL 520
V ++ ++G E P
Sbjct: 261 R-------------------------------------------VVLLDDEGKEI-PVTE 276
Query: 521 GRIVVKL-PLPPGTMSTLYKAPQRFMKIYFTKFP--GYYDTMDAGYYDENGYIYVTARDD 577
G I + L P G M P++ GYY T D Y DE+GY++ R D
Sbjct: 277 GEIALDLGDRPIGLMLGYMGDPEKT-----AAAFRGGYYRTGDKAYRDEDGYLWFVGRAD 331
Query: 578 DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637
DV + +R+S +E +L HP V + AV+ P+P + +P K I
Sbjct: 332 DVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVP-----KAYI--------- 377
Query: 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKL 697
VL Y P E+ EL VRE + P +
Sbjct: 378 -------------------VLKPGYEP---------SRELALELFAHVRERLAPYKRIRR 409
Query: 698 STSVTGLPRTRSGKTARK 715
V LP+T SGK R
Sbjct: 410 IEFVGELPKTISGKIRRV 427
Score = 57.4 bits (139), Expect = 1e-08
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+YA+L ++ + +A L GV GDRVL+ +P +PE +MLA ++LGA+
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60
Query: 170 ARELCARLEHAKPKVIIAAS 189
+L R KPK I+A
Sbjct: 61 PADLRDRFSRGKPKAIVADE 80
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 120 bits (303), Expect = 1e-28
Identities = 137/618 (22%), Positives = 236/618 (38%), Gaps = 138/618 (22%)
Query: 109 KVTYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
K ++ EL A L+ A G+ GDRV + +P +PE + +A +R G +
Sbjct: 41 KWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQ 100
Query: 168 FAARELCARLEHAKPKVIIAA-SCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
A+++ RL+ +K K I+ + + + L L +S D + F+
Sbjct: 101 LTAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSLKTKLLVSEHSRDGWLNFKELLK 160
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
E + H CV ++ +P+ I +TSGTTG P+ S G
Sbjct: 161 EAST-----------------EHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSS---LG 200
Query: 287 ILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGK 346
+ V G W ++ D+ W SD GW+ + + P G ++
Sbjct: 201 LGLKVNGR----YWL-----DLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVH--- 248
Query: 347 PDRTP--DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGE 404
P DP + + + + +APT R++ ++D S Y SLR+ GE
Sbjct: 249 --HLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLTS-----YKFKSLRHCVTGGE 301
Query: 405 HCDHET-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGK 463
+ E + W ++ + + + QTETG C ++ + P S G P YD
Sbjct: 302 PLNPEVLEQWKAQT-GLDLYEGYGQTETGLI----CANFKGMKIKPG-SMGKASPPYD-- 353
Query: 464 YVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRI 523
V+II ++G+ P G I
Sbjct: 354 -----------------------------------------VQIIDDNGNVLPPGTEGDI 372
Query: 524 VVKL-PLPPGTMSTLYKA-PQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVIN 581
+++ P P + + Y P++ T +Y T D G DE+GY + R DDVIN
Sbjct: 373 GIRVKPTRPFCLFSCYVDNPEKTAA---TIRGDFYITGDRGIMDEDGYFWFVGRADDVIN 429
Query: 582 VAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGF 641
+G+R+ +E ++ HP V ++AV+ P+P +GE+
Sbjct: 430 SSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEV----------------------- 466
Query: 642 GKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSV 701
+K + ++ + + E++ KEL+E V+ P + V
Sbjct: 467 -----------------VKAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFV 509
Query: 702 TGLPRTRSGKTARKSIVD 719
LP+T +GK R + D
Sbjct: 510 QELPKTITGKIKRNELRD 527
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 114 bits (289), Expect = 5e-27
Identities = 117/521 (22%), Positives = 175/521 (33%), Gaps = 143/521 (27%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R++TY EL V LA L A+G+ GDRVL+ +P + E ++ A +LGAI +
Sbjct: 39 RRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPA 98
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
A E+ ++ K I A R+ DY
Sbjct: 99 HRAHEIGHFARQSEAKAYIIAD---------RFSGF------------DYA--------- 128
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
ALA+ L D + GTTG PK I
Sbjct: 129 --------------ALARELLEEL-----PDVALFQLSGGTTG------------LPKLI 157
Query: 288 LRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV--VGHSYICYGP-----LAAGITS 340
R ++ + + + V+ V H++ P L AG T
Sbjct: 158 PRTHNDYLYSARASAE-ACGLDPGTVYL------AVLPAAHNFTLSSPGLLGALLAGGTV 210
Query: 341 VMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA--PTALRVIRREDKDSTLGAQYSTDSLRY 398
V++ P P + +I KV TA P L + ++ Q SLR
Sbjct: 211 VLHH-----PPSPDVAFPLIEREKVT--HTALVPALLNLWL----EAAEWDQADLSSLRV 259
Query: 399 LFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVP-PKYST-GLP 456
+ V G E E+ + + E + D P T G P
Sbjct: 260 IQVGGAPLSPELARRVEERLGCPLQQVFGMAE------GLVNYTRLDDPPDVIMRTQGRP 313
Query: 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE 516
D +RI+ + G
Sbjct: 314 ISPADE-----------------IRIVDD-------------------------QGEPVP 331
Query: 517 PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576
P E+G ++ + P T+ Y+AP+ FT G+Y T D D +GY V R
Sbjct: 332 PGEVGELLTR---GPYTIRGYYRAPE-HNARAFTD-DGFYRTGDLVRIDADGYYRVVGRI 386
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
D IN G ++S +E+++LSHP V D AV+G+P+ GE
Sbjct: 387 KDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGE 427
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 114 bits (288), Expect = 8e-27
Identities = 125/543 (23%), Positives = 198/543 (36%), Gaps = 129/543 (23%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
+ ALI D+ + R +TYAEL+ V LA LAA G GD VL+ P E V LA
Sbjct: 21 RPALI-DAA---TGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLA 76
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR---YKTILNEALEI 210
+ GA+ + + E+ +++ + K+ I S E K+ +L ++ +
Sbjct: 77 VLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAE--KLASLALEPVVLLDSADD 134
Query: 211 SSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTG 270
S D A V ++ +D + Y+SGTTG
Sbjct: 135 GSAAI-----------------------DDLLFADEPEPPVVVIKQDDVAALPYSSGTTG 171
Query: 271 KPQGCSELRSEDQPKGILRPVGGHIATLA-WTMSVIYNMGQDDVWWTASDMGWVVGHSYI 329
+ KG++ IA +A N ++DV M + G + I
Sbjct: 172 RS------------KGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVI 219
Query: 330 CYGPLAAGITSV-MYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388
L G T V M P D ++ I +KV L P + + + +
Sbjct: 220 LLALLRLGATVVVM----PRF--DLEKFLAAIEKYKVTHLPVVPPIVLALVKHP----IV 269
Query: 389 AQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTV 447
+Y SL+ + E + + + V + + TE+ T + +
Sbjct: 270 DKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKD--- 326
Query: 448 PPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVR 506
PK S G P VE +
Sbjct: 327 -PKPGSVGRLVPN-------------------------------------------VEAK 342
Query: 507 IIRNDGSECEPHELGRIVVKLPLPPGTMSTLY-KAPQRFMKIYF-----TKFP----GYY 556
I+ D E G LPP L+ + PQ MK Y T G+
Sbjct: 343 IV--D------PETGE-----SLPPNQPGELWVRGPQ-VMKGYLNNPEATAETIDKDGWL 388
Query: 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616
T D GY+DE+GY+++ R ++I G +++ + LE ++LSHP++ D AVI P+ G
Sbjct: 389 HTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAG 448
Query: 617 EIP 619
EIP
Sbjct: 449 EIP 451
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 111 bits (280), Expect = 6e-26
Identities = 112/466 (24%), Positives = 177/466 (37%), Gaps = 135/466 (28%)
Query: 256 ANDPLYILYTSGTTGKPQGCSELR------SEDQPKGILRPVGGHIATLAWTMSVIYNMG 309
A+D I +TSGTTG P+G + P+ +L+P
Sbjct: 146 ADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPT------------------ 187
Query: 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
DDV+ + + + G + PL G ++V+ E P + I H+ LF
Sbjct: 188 PDDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLE-----QATPPLLLKAIQEHRATILF 242
Query: 370 TAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQ 428
TAPTA R + + K + SLR AGE + ++W E++ + +++
Sbjct: 243 TAPTAYRAMLIKVKA------FDISSLRKCVSAGETLPAKVWQDWYERT-GLKIIDGIGA 295
Query: 429 TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLR 488
TE H + + P +TG P PGY
Sbjct: 296 TEMLH----IFISANEENAKPG-ATGKPVPGY---------------------------- 322
Query: 489 KNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIY 548
E RI+ + G+E E GR+ V+ G Y +R + Y
Sbjct: 323 ---------------EARIVDDQGNEVPRGEAGRLAVR-----GPTGCRYLDDER-QQEY 361
Query: 549 FTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
G+ T D DE+GY + AR DD+I AG+ ++ +ED +L+HPDV + AVI
Sbjct: 362 VRD--GWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVI 419
Query: 609 GVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSI 668
GVP+ +G+I C +I VL
Sbjct: 420 GVPDEERGQI-VCAHI--------------------------------VLRDG------- 439
Query: 669 YCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714
T++ E + + L++ V+ I P + V LP+T++GK R
Sbjct: 440 --TKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKIQR 483
Score = 44.8 bits (106), Expect = 1e-04
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 76 INACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA-IGVSAG 134
+N +DRHV G + TY +L ++ + +A L +GV G
Sbjct: 33 LNCAAELLDRHVHNGRGNRPCFRTFE------ETWTYQDLLDRANRIAHVLVEDLGVVPG 86
Query: 135 DRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAAREL-----CARLEHA 180
+RVL+ P + LA ++ GAI A+EL AR+ HA
Sbjct: 87 NRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRAKELTTIVDKARITHA 137
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 109 bits (276), Expect = 1e-25
Identities = 83/379 (21%), Positives = 124/379 (32%), Gaps = 89/379 (23%)
Query: 253 PVEANDPLYILYTSGTTGKPQG-----CSELRSEDQPKGILRPVGGHIATLAWTMSVIYN 307
+D +LYTSGTTG+P+G + L R +
Sbjct: 89 AAMPDDVALLLYTSGTTGEPKGVMHTHNTLLAEV-------RSYVERLG----------- 130
Query: 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYE-GKPDRTPDPSQYYRVIHNHKVN 366
+ DDV S + + G Y PL G T V+ + P R + +I H V
Sbjct: 131 LTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALE------LIREHGVT 184
Query: 367 GLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHW 426
A L + A SLR G E A ++ ++ +
Sbjct: 185 FTMGATPFLADLLAAADA----AGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVVRAY 240
Query: 427 WQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486
TE +T P DGR
Sbjct: 241 GMTEVPL-VTVG-----TPDDPDDKRAAT------------------DGRP--------- 267
Query: 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546
VEVRI+ +DG++ P E G + V+ P P
Sbjct: 268 -------------VPGVEVRIVDDDGNDVPPGEEGELQVR---GPQLFLGYLDPPDNTEA 311
Query: 547 IYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDT 605
G++ T D G D +GY+ +T R D+I G +S +ED++L HP V +
Sbjct: 312 F----TDDGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEV 367
Query: 606 AVIGVPEPTKGEIPFCLYI 624
AV+ +P+ GE C +
Sbjct: 368 AVVAMPDERLGER-VCAVV 385
Score = 62.6 bits (153), Expect = 3e-10
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TY EL + LA +LA +GV GD V +P E +V LA R+GA+ + + +
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 170 ARELCARLEHAKPKVIIAAS 189
REL L A+ +V+
Sbjct: 62 ERELGFILRQARARVLFVPD 81
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 107 bits (271), Expect = 2e-25
Identities = 85/375 (22%), Positives = 132/375 (35%), Gaps = 97/375 (25%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL--AWTMSVIYNMGQDDVWW 315
DP I YTSGTTG+P+G + H L ++++ + + D
Sbjct: 3 DPALIQYTSGTTGRPKGA---------------MLTHRNVLNNGYSIARRLGLTEGDRTL 47
Query: 316 --------TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNG 367
+G + L AG T V+ DP R+I ++
Sbjct: 48 VPVPLFHVFGLVLGVL--------ASLTAGATLVL-----MEKFDPGAALRLIERERITA 94
Query: 368 LFTAPT-ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVT-MLNH 425
L PT + ++ D D ++ SLR G E + F + +
Sbjct: 95 LHGVPTMFIALLEHPDFD-----KFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTG 149
Query: 426 WWQTETGHSITAHCLGYQHDTVPPK-YSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILP 484
+ TET T D + + G P PG
Sbjct: 150 YGMTETSGVGTQTSGD---DPYEDRPGTVGRPLPG------------------------- 181
Query: 485 ESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRF 544
VEV+I+ DG E P E+G I V+ M Y P+
Sbjct: 182 ------------------VEVKIVDPDGGEVPPGEVGEICVR---GYSVMKGYYNDPEAT 220
Query: 545 MKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGD 604
+ G+ T D GY DE+GY+ + R D+I G + + +E+ +L+HP V +
Sbjct: 221 AEAIDA--DGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAE 278
Query: 605 TAVIGVPEPTKGEIP 619
AV+GVP+ GE+
Sbjct: 279 AAVVGVPDERLGEVV 293
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 106 bits (267), Expect = 2e-24
Identities = 103/491 (20%), Positives = 161/491 (32%), Gaps = 147/491 (29%)
Query: 241 DALAQRLSH---RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT 297
L L + EA+D Y LYTSGTTGKP+G + P +
Sbjct: 72 QDLEHILDDSGAALLVTEADDIAYWLYTSGTTGKPKGV--MHRHRDPLTFAEAFARELLG 129
Query: 298 LAWTMSVIYNMGQDDVWWTASDM--GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQ 355
L D +++S + + +G+S PL +G ++V+ G P P
Sbjct: 130 LQ----------PGDRIFSSSKLFFAYGLGNSL--LFPLFSGASAVLLPGW----PTPEA 173
Query: 356 YYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWA 414
++ H+ LF P R + +S G+ S+R AGE + WA
Sbjct: 174 VLDLLARHRPTVLFGVPALYRALL----ESGAGSAPLFRSVRLCVSAGEALPAGLAERWA 229
Query: 415 EKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474
E + + +L+ TE H ++ + P +TG P PGY
Sbjct: 230 E-ATGIEILDGIGSTEVLHIFISN----RPGAARPG-TTGRPVPGY-------------- 269
Query: 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP------ 528
E R++ G E +G + V+ P
Sbjct: 270 -----------------------------EARLVDESGREVPAGTVGDLWVRGPSLAPGY 300
Query: 529 --LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHR 586
LP T TL G+ T D D +G+ R DD+I V+G
Sbjct: 301 WNLPEKTQRTLRD--------------GWLRTGDRFSRDADGWYRYQGRADDMIKVSGQW 346
Query: 587 LSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLER 646
+S +E + HP V + AV+ VP+ G L F
Sbjct: 347 VSPLEVEAALGEHPAVAEAAVVAVPDED-------------------GLVRLKAFVVPRP 387
Query: 647 PTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVT---G 703
+ + + ++L +RE +A +K +
Sbjct: 388 GEA-----------------------IQQLLERDLHRFLRER---LAPYKCPRQIEFLDT 421
Query: 704 LPRTRSGKTAR 714
LPRT +GK R
Sbjct: 422 LPRTATGKLQR 432
Score = 52.7 bits (127), Expect = 4e-07
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
K A + +TY EL + + A L A+GVS GDRVL+ +P PE + + LA
Sbjct: 1 KTAFYCGE------QSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLA 54
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIA 187
++ GA+ + ++L L+ + +++
Sbjct: 55 CLKAGAVAVALNPLLTPQDLEHILDDSGAALLVT 88
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 100 bits (252), Expect = 6e-23
Identities = 93/373 (24%), Positives = 140/373 (37%), Gaps = 94/373 (25%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI-Y-NMGQDDVWW 315
D I+YTSG+TG+P KG+ + H A S+ Y + +DD
Sbjct: 3 DLAAIIYTSGSTGEP------------KGV---MLSHRNLTAGARSIAQYLELTEDDRIL 47
Query: 316 TASDMGWVVGHSYICYG------PLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
YG G T V+ R P + + ++ G
Sbjct: 48 AVLPF-------SFDYGLSQLLTAFRVGGTLVLES----RFAFPRDVLKHLAKERITGFA 96
Query: 370 TAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQ 428
PT + R D A+ SLRYL AG +T ++F + + + +
Sbjct: 97 GVPTTWAQLLRLDPL----AREDFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGL 152
Query: 429 TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLR 488
TE ST LP P LD R P+S+
Sbjct: 153 TEA------------------FRSTYLP-PEE------------LDRR-------PDSIG 174
Query: 489 KNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ----RF 544
K +P +VE+ ++ DG+ C P E+G +V + M + P+ R
Sbjct: 175 KAIP---------NVELWVVDEDGNRCAPGEVGELVHRGAN---VMKGYWNDPEATAERL 222
Query: 545 MKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGD 604
Y T D DE GY+Y R DD+I G+R+S + +E+V+ +HP V +
Sbjct: 223 RPGPLPGEIVLY-TGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAE 281
Query: 605 TAVIGVPEPTKGE 617
AVIGVP+P G+
Sbjct: 282 AAVIGVPDPLLGQ 294
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 103 bits (258), Expect = 6e-23
Identities = 128/536 (23%), Positives = 200/536 (37%), Gaps = 107/536 (19%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+TYAEL E A L GV AGDRV +++P P+ + ++LGA+H V
Sbjct: 57 HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPL 116
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCK--PDYCIIFQRRC 225
F EL L A +V++A + VR +T L + S P +
Sbjct: 117 FREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDS 176
Query: 226 VEEAELTPGYDILWDDAL----AQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSE 281
+ L D L A P + + YT GTTG P+GC
Sbjct: 177 LRAPRLAAAG---AIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGC------ 227
Query: 282 DQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSV 341
+ T A +V G+D V+ + W+ G ++ PL +G T V
Sbjct: 228 ------EHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLV 281
Query: 342 MYEGKPDRTPDPSQYYRVIHNHKVNGLF-TAPTALRVIRREDKDSTLGAQYSTDSLRYL- 399
+ R D + + ++V A+ ++ D A+Y SLR +
Sbjct: 282 LLA----RW-DAVAFMAAVERYRVTRTVMLVDNAVELM-----DHPRFAEYDLSSLRQVR 331
Query: 400 ---FVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ---HDTVPPKYST 453
FV + D+ + W + +V W TET H+ G+Q D +
Sbjct: 332 VVSFVKKLNPDYR-QRWRALTGSVLAEAAWGMTET-HTCDTFTAGFQDDDFDLLSQPVFV 389
Query: 454 GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGS 513
GLP PG + K + F + E+ + G+
Sbjct: 390 GLPVPGTEFKICD---------------------------------FETGELLPL---GA 413
Query: 514 ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP---------GYYDTMDAGYY 564
E G IVV+ P +L K Y+ K P G+ T D G
Sbjct: 414 E------GEIVVRTP-------SLLKG-------YWNK-PEATAEALRDGWLHTGDIGKI 452
Query: 565 DENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPF 620
DE G+++ R +++ V G + S +E ++ HP V +AV+G P+P KG++P
Sbjct: 453 DEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPV 508
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 99 bits (250), Expect = 2e-22
Identities = 87/368 (23%), Positives = 128/368 (34%), Gaps = 104/368 (28%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317
D ILYTSGTTG P KG+L + A + + + DDV T
Sbjct: 82 DTAAILYTSGTTGPP------------KGVLLT-HAQLLFAARLAARLLGLRPDDVLLTP 128
Query: 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
+ + +Y Y L G T V+ S+++ + H +
Sbjct: 129 LPLFHINAQAYSVYAALLVGATLVLLPRF-----SASRFWDQVRKHGATVFNLLGAMAAI 183
Query: 378 I-----RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETG 432
+ +D+D LR++F A E+ F V ++ + TETG
Sbjct: 184 LMKQPPSPDDRDH---------PLRFVFGAP--LPAAIWPAFEERFGVKLVEGYGMTETG 232
Query: 433 HSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVP 492
I + P S G P PG
Sbjct: 233 VPI----IAPGDPAPPG--SCGRPRPGV-------------------------------- 254
Query: 493 KGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF 552
EVRI+ DG E P E+G +VV+ P P M K Y+
Sbjct: 255 -----------EVRIVDEDGREVPPGEVGELVVR-PRRPWAM----------FKGYY-GM 291
Query: 553 P---------GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
P G++ T D G DE+G++Y R D I G +S+ +E +L+HP V
Sbjct: 292 PEATAKAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVA 351
Query: 604 DTAVIGVP 611
+ AV+ VP
Sbjct: 352 EAAVVAVP 359
Score = 68.8 bits (169), Expect = 4e-12
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R+ TYAEL E+V+ LA L A+GV GDRV + + PE + + A +LGA+ +
Sbjct: 2 RRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTA 61
Query: 168 FAARELCARLEHAKPKVIIAASCGV 192
EL L+H+ ++I+ + +
Sbjct: 62 LRGEELAHILDHSGARLIVVDTAAI 86
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 98.4 bits (245), Expect = 2e-21
Identities = 131/552 (23%), Positives = 202/552 (36%), Gaps = 112/552 (20%)
Query: 83 IDRHVERGMAK---KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLI 139
I+ H + +A K AL ++R+ +Y EL +V +A LA +GV GD V
Sbjct: 24 INDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSF 83
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR 199
+P E LA R+GA+ + + F REL L HA KV + S
Sbjct: 84 QLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPS---------V 134
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL-----WD---DALAQRLSHRC 251
++ + A+ + + Q V + + +D + D DA A R
Sbjct: 135 FRGFDHAAM-ARELQSKLPALRQV-VVIDGDGDDSFDRVLMTPERDDTPDAAAILAGPRP 192
Query: 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIY----N 307
P +D ++YTSGTTG +PKG++ H A ++ Y
Sbjct: 193 SP---DDVTQLIYTSGTTG------------EPKGVM-----HTANTLFSNIHPYAERLE 232
Query: 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNG 367
+G DV AS M G Y PL T+V+ + +P++ +I V
Sbjct: 233 LGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQD-----IWNPARAAELIRETGVTF 287
Query: 368 LFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWW 427
+ L + R K+S GA SL AG A + +++ W
Sbjct: 288 TMASTPFLTDLCRAVKES--GAPVP--SLFTFLCAGAPIPGILVERAWELLGALIVSAWG 343
Query: 428 QTETGHSITAHCLGYQHDTVPPKYST--GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPE 485
TE G + D K ST G P PG
Sbjct: 344 MTENGAVTVT-----EPDDALEKASTTDGRPLPG-------------------------- 372
Query: 486 SLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545
VEV++I +G++ E GR++V+ K P
Sbjct: 373 -----------------VEVKVIDANGAKLSQGETGRLLVR---GCSNFGGYLKRPH--- 409
Query: 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDT 605
+ T G++DT D + D GYI + R DVI G + +E+++ HP V
Sbjct: 410 -LNSTDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQV 468
Query: 606 AVIGVPEPTKGE 617
A++ P+ GE
Sbjct: 469 AIVAYPDERLGE 480
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 97.7 bits (244), Expect = 3e-21
Identities = 145/643 (22%), Positives = 226/643 (35%), Gaps = 195/643 (30%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
VTY EL+ + + LA L A+G+ GD V I + PE A R G ++ +
Sbjct: 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
A E+ ++ + KV+I ++ + A E+++ P + A
Sbjct: 72 AAEIAYIVDDSGAKVLIVSAALAD------------TAAELAAELPAGV----PLLLVVA 115
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILR 289
PG+ +++ALA + A + LY+SGTTG+ PKGI R
Sbjct: 116 GPVPGFRS-YEEALAAQPDTPIADETAGADM--LYSSGTTGR------------PKGIKR 160
Query: 290 P-VGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPL-------------A 335
P G M + G M Y+ PL A
Sbjct: 161 PLPGLDPDEAPGMMLALLGFG----------MYGGPDSVYLSPAPLYHTAPLRFGMSALA 210
Query: 336 AGITSVMYEG-KPDRTPDPSQYYRVIHNHKVNGLFTA----PTALRVIRREDKDSTLGAQ 390
G T V+ E + + YRV H+ V +F P +R A+
Sbjct: 211 LGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVR------------AR 258
Query: 391 YSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWW---------QTETGHS--ITAHC 439
Y SLR A C E K M++ WW +E G IT+
Sbjct: 259 YDVSSLRVAIHAAAPCPVEVKR--------AMID-WWGPIIHEYYASSEGGGVTVITSE- 308
Query: 440 LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATH 499
L PG GK V G VRIL E
Sbjct: 309 -------------DWLAHPGSVGKAV--------LGE---VRILDE-------------- 330
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559
DG+E P E+G + ++ P + P++ G+
Sbjct: 331 -----------DGNELPPGEIGTVYFEMDGYP---FEYHNDPEKTAAARNPH--GWVTVG 374
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
D GY DE+GY+Y+T R D+I G + +E+++++HP V D AV GVP+
Sbjct: 375 DVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPD------- 427
Query: 620 FCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGK 679
++MG ER ++ +++P + + +
Sbjct: 428 -----------EEMG----------ER--------VKAVVQP------ADGADAGDALAA 452
Query: 680 ELKELVREAIGPIAAFKLSTSV---TGLPRTRSGKTARKSIVD 719
EL +R +A +K S+ LPRT +GK ++ + D
Sbjct: 453 ELIAWLRGR---LAHYKCPRSIDFEDELPRTPTGKLYKRRLRD 492
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 95.7 bits (238), Expect = 1e-20
Identities = 136/649 (20%), Positives = 235/649 (36%), Gaps = 155/649 (23%)
Query: 74 GEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSA 133
+ NA + +DR+V G K A I D I ++Y EL+ QV L +L +GV
Sbjct: 1 EKYNAAEDLLDRNVVEGRGGKTAFIDD------ISSLSYGELEAQVRRLGAALRRLGVKR 54
Query: 134 GDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVE 193
+RVL+ M + ++ L +R G + + A + LE ++ +V+ +
Sbjct: 55 EERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSG---- 110
Query: 194 PNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVP 253
++ AL S P V G L + + +
Sbjct: 111 -----ELLPVIKAALGKS---PH-----LEHRVVVGRPEAGEVQLAELLATESEQFKPAA 157
Query: 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL--RPVGGHIATLAWTMSVIYNMGQD 311
+A+DP + LY+SG+TG P+G S L R G + +D
Sbjct: 158 TQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLG--------------IRED 203
Query: 312 DVWWTASDM--GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
DV ++A+ + + +G++ P++ G T+V+ +R P P + + H+ +
Sbjct: 204 DVVFSAAKLFFAYGLGNALTF--PMSVGATTVLM---GER-PTPDAVFDRLRRHQPTIFY 257
Query: 370 TAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQT 429
PT + D L A+ LR AGE E + F V +++ T
Sbjct: 258 GVPTLYAAML---ADPNLPAE-DQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGST 313
Query: 430 ETGH---SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486
E H S + Y ++G P PGY
Sbjct: 314 EMLHIFLSNLPGDVRYG--------TSGKPVPGY-------------------------- 339
Query: 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546
+R++ + G + E G +++ P TM +A R
Sbjct: 340 -----------------RLRLVGDGGQDVAAGEPGELLISGP-SSATMYWNNRAKTR--- 378
Query: 547 IYFTKFPG-YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDT 605
F G + + D +++G R DD++ V+G +S +E ++ HP V +
Sbjct: 379 ---DTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEA 435
Query: 606 AVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPI 665
AV+GV + GLI +P + ++++P I
Sbjct: 436 AVVGVEDE----------------------DGLI------KPKAF------IVLRPGQDI 461
Query: 666 SSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714
+ T ELKE V++ + P + V LP+T +GK R
Sbjct: 462 DTALET--------ELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQR 502
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 95.7 bits (238), Expect = 1e-20
Identities = 106/521 (20%), Positives = 186/521 (35%), Gaps = 111/521 (21%)
Query: 111 TYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
TY +L E VS +A L + V G+R+ I E IV + A ++ I +
Sbjct: 29 TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
EL +L+ + V+ KT N AL + +
Sbjct: 89 ENELIFQLKDSGTTVLFVE------------KTFQNMALSMQK---------------VS 121
Query: 230 ELTPGYDILWDDALAQRLSHR---CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
+ ++ +L + + V + I YTSGTTGKP+G + L E+
Sbjct: 122 YVQR---VISITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKG-AVLTQENMFWN 177
Query: 287 ILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGK 346
L + + TM D + + G + L AG ++
Sbjct: 178 ALN----NTFAIDLTM--------HDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIV---- 221
Query: 347 PDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHC 406
P + +P++ +I HKV + PT + + + + + S+R+ + G C
Sbjct: 222 PRKF-EPTKALSMIEKHKVTVVMGVPTIHQALI----NCSKFETTNLQSVRWFYNGGAPC 276
Query: 407 DHE-TKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
E + + ++ F G +T +T P
Sbjct: 277 PEELMREFIDRGFLFGQ---------GFGMT--------ETSP----------------- 302
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
+ ML+ D R S+ K V F + +I + ++ E E+G +++
Sbjct: 303 TVFMLSEEDARRK-----VGSIGKPVL-------FC--DYELIDENKNKVEVGEVGELLI 348
Query: 526 KLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGH 585
+ P M + P + T G+ T D DE+G++Y+ R ++I G
Sbjct: 349 R---GPNVMKEYWNRPDATEE---TIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGE 402
Query: 586 RLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626
+ +E V+ DV + AV+G GEIP +KK
Sbjct: 403 NIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKK 443
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 94.6 bits (236), Expect = 3e-20
Identities = 126/558 (22%), Positives = 198/558 (35%), Gaps = 145/558 (25%)
Query: 105 KSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRV------------LIYMPLIPEAIVSML 152
SI + TYA+ +V LA +L ++GV GDRV L + A+ M
Sbjct: 21 GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYF------AVPGMG 74
Query: 153 AT-----VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEA 207
A RL + ++ + HA+ KVI L
Sbjct: 75 AVLHTLNPRL-----------SPEQIAYIINHAEDKVIFV------------DDDFLPLL 111
Query: 208 LEISSCKPD--YCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVP-VEANDPLYILY 264
I+ P +++ + E L Y +++ L + P ++ N + Y
Sbjct: 112 EAIAPRLPTVKAVVVYDDADMPETSLPNVYA--YEELLEEESPEYEWPELDENTAAGLCY 169
Query: 265 TSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVWWTASDM- 320
TSGTTG P KG++ R + H A S+ + + D M
Sbjct: 170 TSGTTGNP------------KGVVYSHRSLVLHTLASALPDSL--GLSESDTVLPVVPMF 215
Query: 321 ---GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
W + Y G V+ P R DP+ +I KV PT
Sbjct: 216 HVNAWGLP-----YAATMVGAKLVL----PGRYLDPASLLDLIEEEKVTVSAGVPTIWLG 266
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITA 437
+ + SLR + V G E+ V +++ W TET T
Sbjct: 267 LL----NYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERG-VEVIHAWGMTETSPLGTV 321
Query: 438 HCLGYQHDTVPP------KYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNV 491
L +P + G P PG
Sbjct: 322 SRLKPHLVDLPEEEKLELRAKQGRPVPG-------------------------------- 349
Query: 492 PKGQNATHFTSVEVRIIRNDGSECEPHE---LGRIVVKLPLPPGTMSTLYKAPQRFMKIY 548
VE+RI+ ++G+E P + +G +VV+ P + YK P++ +
Sbjct: 350 -----------VELRIVDDEGNEL-PWDGKTVGELVVR---GPWVTGSYYKDPEKTEE-- 392
Query: 549 FTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
T+ G++ T D DE+GYI +T R DVI G +S+ LE+ +++HP V + AV+
Sbjct: 393 LTR-DGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVV 451
Query: 609 GVPEPTKGEIPFCLYIKK 626
GVP GE P + + K
Sbjct: 452 GVPHEKWGERPLAVVVLK 469
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 91.9 bits (229), Expect = 4e-20
Identities = 87/376 (23%), Positives = 140/376 (37%), Gaps = 102/376 (27%)
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVG---GHIATLAWTMSVIYNMGQDD 312
+DP IL+TSGTTG+P+G V ++ A ++ + +
Sbjct: 1 PDDPALILHTSGTTGRPKG----------------VPLTHKNLLASARNIAKSHKL---- 40
Query: 313 VWWTASDMGWVV-----GHSYIC--YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKV 365
T SD V H I L AG + V S+++ I ++V
Sbjct: 41 ---TPSDRCLNVMPLFHIHGLIVSLLATLLAGGSVVCPPKF-----SASKFWDDIAKYRV 92
Query: 366 NGLFTAPTALRVI-RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLN 424
PT +++ + + LR++ A + EK F V +L
Sbjct: 93 TWYSAVPTIHQILLKTAKPNPGKPPP----RLRFIRSASAPLPPAVLDRLEKRFGVPVLE 148
Query: 425 HWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILP 484
+ TE H I ++ P LP
Sbjct: 149 AYGMTEAAHQIASN-------------------P------------------------LP 165
Query: 485 ESLRK--NVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ 542
+RK +V + VEV I+ +DG P + G IV++ P + P
Sbjct: 166 PLVRKPGSVGRPAG------VEVAILDDDGRPLPPGQEGEIVIR---GPNVTAGYLNNP- 215
Query: 543 RFMKIYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPD 601
+ F G++ T D GY DE+GY+++T R ++IN G ++S +E+V+L HP
Sbjct: 216 ---EANREAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPA 272
Query: 602 VGDTAVIGVPEPTKGE 617
V + V GVP+ GE
Sbjct: 273 VAEAVVFGVPDELYGE 288
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 92.8 bits (231), Expect = 1e-19
Identities = 122/527 (23%), Positives = 187/527 (35%), Gaps = 111/527 (21%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R+ ++ EL ++ + AG LAA+GV GD V + M + A +RLGA V
Sbjct: 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWH 69
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
F E+ LE + +V+IA + + + L + + S I R
Sbjct: 70 FKPEEIAYILEDSGARVLIAHADLLHG-----LASALPAGVTVLSVPTPPEIAAAYRISP 124
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
P I W+ LAQ+ + PV P ++YTSGTTG P KG+
Sbjct: 125 ALLTPPAGAIDWEGWLAQQEPYDGPPVPQ--PQSMIYTSGTTGHP------------KGV 170
Query: 288 LRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPL------AAGITSV 341
R A G G + GPL A G+ +
Sbjct: 171 RRAAPTPEQAAAAEQMRALIYGLKP------------GIRALLTGPLYHSAPNAYGLRAG 218
Query: 342 MYEGKPDRTP--DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYL 399
G P DP + ++I H++ + PT IR + A+Y SLR++
Sbjct: 219 RLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMF--IRLLKLPEEVRAKYDVSSLRHV 276
Query: 400 FVAGEHCDHETKNWAEKSFNVTMLNHWW---------QTETGHSITAHCLGYQHDTVPPK 450
A C + K M+ WW TE+G A
Sbjct: 277 IHAAAPCPADVKR--------AMIE-WWGPVIYEYYGSTESGAVTFATS----------- 316
Query: 451 YSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN 510
L PG GK P E+R +
Sbjct: 317 -EDALSHPGTVGK------------------AAPG-----------------AELRFVDE 340
Query: 511 DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYI 570
DG E+G I ++ P T + P++ +I G+ + D GY D +GY+
Sbjct: 341 DGRPLPQGEIGEIYSRIAGNPDF--TYHNKPEKRAEI---DRGGFITSGDVGYLDADGYL 395
Query: 571 YVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
++ R D++ G + + +E V+ + P V D AV G+P+ GE
Sbjct: 396 FLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGE 442
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 91.1 bits (226), Expect = 4e-19
Identities = 107/521 (20%), Positives = 182/521 (34%), Gaps = 92/521 (17%)
Query: 103 VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS 162
VT ++Y +L V LAG L G+ GDRV + M E +V++LA R +
Sbjct: 37 VTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVV 96
Query: 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQ 222
+ E R + A +V++ + G + A + P +
Sbjct: 97 PLDPALPIAEQRVRSQAAGARVVLIDADGPH-----------DRAEPTTRWWPLTVNVGG 145
Query: 223 RRCVEEAELTPGYDILWDDALAQRLSHRCVP--VEANDPLYILYTSGTTGKPQGCSELRS 280
L+ D A + P + +D + I++T GTTG P+
Sbjct: 146 DSGPSGGTLSVHLD-----AATEPTPATSTPEGLRPDDAM-IMFTGGTTGLPKMVPWTH- 198
Query: 281 EDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITS 340
+IA+ + Y + D T + M GH G +AA + +
Sbjct: 199 ------------ANIASSVRAIITGYRLSPRDA--TVAVMPLYHGH-----GLIAALLAT 239
Query: 341 VMYEGK---PDRTP-DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396
+ G P R ++ I PT +++ ++ +T + +L
Sbjct: 240 LASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILL--ERAATEPSGRKPAAL 297
Query: 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLP 456
R++ ET + F ++ + TE H +T + T P STGL
Sbjct: 298 RFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLV 357
Query: 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE 516
GR+ T ++RI+ +DG
Sbjct: 358 ------------------GRS-----------------------TGAQIRIVGSDGLPLP 376
Query: 517 PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576
+G + ++ T+ Y FT G+ T D G G + + R
Sbjct: 377 AGAVGEVWLRGT----TVVRGYLGDPTITAANFTD--GWLRTGDLGSLSAAGDLSIRGRI 430
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
++IN G ++S +E V+ SHP+V + AV GVP+ GE
Sbjct: 431 KELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGE 471
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 90.8 bits (225), Expect = 8e-19
Identities = 66/380 (17%), Positives = 127/380 (33%), Gaps = 60/380 (15%)
Query: 84 DRHVERGMAKKVALIHDSP-VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ ++ A D+ + + +++TYAEL + + LA L ++GV G+ V I
Sbjct: 226 RLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILAD 285
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
E +V++LA ++ GA + + + A L LE ++P +++
Sbjct: 286 RSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLT--------------- 330
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
Q + PG + + + + YI
Sbjct: 331 -------------------QAHLRVDDVGLPGLALDDALSEIPDTDPIPQALLGDALAYI 371
Query: 263 LYTSGTTGKPQG-CSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
+YTSG+TG+P+G E R+ L + + DD + +
Sbjct: 372 IYTSGSTGQPKGVRIEHRAL-------------ANLLND-AGARFGLDADDRVLALASLS 417
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
+ I +G L G + + DP+ ++ + L P LR++
Sbjct: 418 FDASVFEI-FGALLEG--ARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLL--L 472
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHET--KNWAEKSFNVTMLNHWWQTETGHSITAHC 439
+ LR L GE + + +LN + TE +
Sbjct: 473 LAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFP 532
Query: 440 LGYQHDTVPPKYSTGLPFPG 459
+ + ++ P G P
Sbjct: 533 ISAELESRVP---IGRPVAN 549
Score = 31.5 bits (71), Expect = 1.7
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHP 600
Y T D +G + R D + + G R+ +E + P
Sbjct: 597 LYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 86.6 bits (215), Expect = 4e-18
Identities = 77/360 (21%), Positives = 123/360 (34%), Gaps = 71/360 (19%)
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
T GTTG P+ + R + AW +++ +G DV + V
Sbjct: 10 TGGTTGAPK-------------LARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVG 56
Query: 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPS---QYYRVIHNHKVNGLFTAPTALRVIRRE 381
G PLA G T V+ P +P+ +++++ ++V L PT L + +
Sbjct: 57 GAIVTGLAPLARGATVVL--PTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQV 114
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
A S SLRY E E V ++ + TE + G
Sbjct: 115 PLG---DADIS--SLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRG 169
Query: 442 YQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFT 501
S GL P VR+ +A
Sbjct: 170 GP----RRPGSVGLRLPY------------------TRVRVAK----------LDAGG-- 195
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
G +C P E+G + ++ P + Y G+ +T D
Sbjct: 196 --------ALGRDCAPGEVGVLAIRGP----NVFPGYLNDAHNAGARLE--DGWLNTGDL 241
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
G D +GY+++T R D+I GH + +E+ +L HP V A +G P+ GE+P
Sbjct: 242 GRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVA 301
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 87.7 bits (218), Expect = 5e-18
Identities = 88/389 (22%), Positives = 140/389 (35%), Gaps = 100/389 (25%)
Query: 243 LAQRLSHR-CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT 301
L L + +DP IL+TSG+ G P KG++ +A +
Sbjct: 130 LPPALLRLFLAGAKPDDPAVILFTSGSEGLP------------KGVVLSHRNLLANIDQI 177
Query: 302 MSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYY---R 358
+VI ++ +DV A + G + PL G+ V Y P+P
Sbjct: 178 AAVI-DLNTEDVLLGALPLFHAFGLTVTLLLPLLTGLRVVYY-------PNPLDAKKIAE 229
Query: 359 VIHNHKVNGLFTAPTALRVI-RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKN-WAEK 416
+I ++K L PT LR R SLR + E T+ + EK
Sbjct: 230 LIRDYKATILCGTPTFLRGYARNAHP-------EDFSSLRLVVAGAEKLPEATRELFEEK 282
Query: 417 SFNVTMLNHWWQTETGHSITAHC-LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475
F + +L + TE I+ + +G + TV G P PG
Sbjct: 283 -FGIRILEGYGATECSPVISVNTPMGNKPGTV------GRPLPG---------------- 319
Query: 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPH-ELGRIVVKLPLPPGTM 534
+EVRI+ + E P E G ++V+ P M
Sbjct: 320 ---------------------------IEVRIVSPETHEELPIGEGGLLLVR---GPNVM 349
Query: 535 STLYKAPQRFMKIYFTKF-----PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLST 589
S ++ T G+YDT D G DE+G++ + R + G +S
Sbjct: 350 SGYLNNEEK------TSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSL 403
Query: 590 SALEDVVLSH-PDVGDTAVIGVPEPTKGE 617
+A+E+++ P+ A + VP+ KGE
Sbjct: 404 TAVEELLSEILPEDSLHAAVEVPDEKKGE 432
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 87.8 bits (217), Expect = 5e-18
Identities = 118/525 (22%), Positives = 193/525 (36%), Gaps = 93/525 (17%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ +T++ ++V A L +GV GDRV I +P P+A++ T+ G I
Sbjct: 48 KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPL 107
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEAL--EISSCKP-----DYCII 220
+ REL +L + KVI+ V+ T + + I+ P Y +
Sbjct: 108 YTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167
Query: 221 FQRRC-----VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYIL-YTSGTTGKPQG 274
+++ V E+E LW+ + + VP + + L +L YT GTTG P
Sbjct: 168 QKKQSNLVVKVSESETIH----LWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFP-- 221
Query: 275 CSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPL 334
KG++ ++ + +YN + + ++ V + YG
Sbjct: 222 ----------KGVMLTHKNLVSNTLMGVQWLYNCKEGE------EVVLGVLPFFHVYGMT 265
Query: 335 AAGITSVMYEGKPDRTP--DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYS 392
A S+M K P D + I HKV APT + +S L +Y
Sbjct: 266 AVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALL----NSPLLKEYD 321
Query: 393 TDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYS 452
S+R E + E ++ + TE+ S H VP S
Sbjct: 322 ISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES--SPVTHSNFLWEKRVPG--S 377
Query: 453 TGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDG 512
G+P+P + +++ G
Sbjct: 378 IGVPWPDTEAMIMSL------------------------------------------ETG 395
Query: 513 SECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYV 572
P E+G IVVK P M + P+ + G+ T D GY DE+G+ YV
Sbjct: 396 EALPPGEIGEIVVK---GPQIMKGYWNKPEETAAVLQD---GWLHTGDVGYMDEDGFFYV 449
Query: 573 TARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
R D+I +G + +E+V+ H V + IGVP+P +GE
Sbjct: 450 KDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGE 494
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 87.3 bits (217), Expect = 6e-18
Identities = 56/181 (30%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 108 RKVTYAELQEQVSLLAGSL-AAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG 166
R ++Y EL E+ LAG L GV GDRVL+YM P+ +++ A +R A+ V
Sbjct: 34 RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNP 93
Query: 167 GFAARELCARLEHAKPKVIIAASC---GVEPNK---------VVRYKTILNEALEISSCK 214
EL + + +V I S V P V +Y L EI+
Sbjct: 94 MNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAV-- 151
Query: 215 PDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
P + R L PG + W +ALA L+ +D + YTSGTTG P+G
Sbjct: 152 PAWL----RAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207
Query: 275 C 275
C
Sbjct: 208 C 208
Score = 55.0 bits (133), Expect = 1e-07
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 502 SVEVRIIRND-GSECEPHELGRIVVKLPLPPGTMSTLYKAPQR----FMKIYFTKFPGYY 556
V+ R+I + E P E+G IVV P + P+ F++I +F +
Sbjct: 365 GVDARVIDPETLEELPPGEVGEIVVH---GPQVFKGYWNRPEATAEAFIEIDGKRF---F 418
Query: 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616
T D G DE GY ++T R +IN +G ++ + +E+++ HP + + VI P+P +G
Sbjct: 419 RTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRG 478
Query: 617 E 617
E
Sbjct: 479 E 479
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 86.7 bits (215), Expect = 7e-18
Identities = 96/536 (17%), Positives = 178/536 (33%), Gaps = 153/536 (28%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
T+ +L + + LA +L A G+ +G RV + E ++ + A + LGA +++
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 171 RELCARLEHAKPKVIIAASC----GVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
E +LE ++++ S + + + R + +S+
Sbjct: 61 NERTNQLEDLDVQLLLTDSLLEEKDFQADSLDRIEAAGRYETSLSASFNM---------- 110
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
+ +++TSGTTGKP K
Sbjct: 111 ------------------------------DQIATLMFTSGTTGKP------------KA 128
Query: 287 ILRPVGGHIATLAWTMSVIYNMG--QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYE 344
+ H A+ + N+G +DD W + + + G S I + L G T + +
Sbjct: 129 VPHTFRNHYAS---AVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVD 184
Query: 345 GKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGE 404
+Q +I N +V + PT L + E ++LR + + G
Sbjct: 185 KF-------NQLLEMIANERVTHISLVPTQLNRLLDEG--------GHNENLRKILLGGS 229
Query: 405 HCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKY 464
A++ + + + + TET +T + + + G P G
Sbjct: 230 AIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTT----ATPEMLHARPDVGRPLAG----- 279
Query: 465 VNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIV 524
E++I + D E G I+
Sbjct: 280 --------------------------------------REIKI-KVDNKE----GHGEIM 296
Query: 525 VKLPLPPGTMSTLYKAPQRFMKIYFTKFP--------GYYDTMDAGYYDENGYIYVTARD 576
VK MK Y + G+++T D G D G++YV R
Sbjct: 297 VKGAN--------------LMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRR 342
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632
DD+I G + +E V+ HP + + V+ P+ G++P YI + +
Sbjct: 343 DDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPV-AYIVSESDISQ 397
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 86.2 bits (214), Expect = 2e-17
Identities = 119/549 (21%), Positives = 192/549 (34%), Gaps = 110/549 (20%)
Query: 99 HDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158
D P T TYAEL V+ A L ++GV GD V +P +PE ++ G
Sbjct: 53 LDRPET-----WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG----G 103
Query: 159 AIHSVVF---GGFAARELCARLEHAKPKVIIAASCGVEP--------NKVVRYKTILNEA 207
+ ++ L A KV++ G P +V+ L
Sbjct: 104 EAAGIANPINPLLEPEQIAELLRAAGAKVLVTL--GPFPGTDIWQKVAEVLAALPELRTV 161
Query: 208 LEISSCKPDYCIIFQRRCVEEAELTPGYDIL-WDDALAQRLSHRCV---PVEANDPLYIL 263
+E+ Y +R V IL +D LA++ R P+ +D
Sbjct: 162 VEVDL--ARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYF 219
Query: 264 YTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323
+T GTTG PK G +A AW +++ +G D + + V
Sbjct: 220 HTGGTTG------------MPKLAQHTHGNEVAN-AWLGALLLGLGPGDTVFCGLPLFHV 266
Query: 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPS---QYYRVIHNHKVNGLFTAPTALRVIRR 380
PLA G V+ P P +++++ +++N L PT + +
Sbjct: 267 NALLVTGLAPLARGAHVVL--ATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQ 324
Query: 381 EDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCL 440
D + SLRY E E + V ++ + TE A C+
Sbjct: 325 VPVDG-----HDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTE------ATCV 373
Query: 441 GYQHDTVPPKY-----STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495
PP S GL P V +V+L D +R
Sbjct: 374 ---SSVNPPDGERRIGSVGLRLPYQR---VRVVIL---DDAGRYLR-------------- 410
Query: 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555
+C E+G + + P + + Y ++ G+
Sbjct: 411 ------------------DCAVDEVGVLCIAGP----NVFSGYLEAAHNKGLWL--EDGW 446
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTK 615
+T D G D +GY ++T R D+I GH + +A+E+ +L HP V A +G P+
Sbjct: 447 LNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHA 506
Query: 616 GEIPFCLYI 624
GE+P Y+
Sbjct: 507 GELP-VAYV 514
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 84.4 bits (210), Expect = 3e-17
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 41/230 (17%)
Query: 244 AQRLSH-------RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH-- 294
A+RL++ + + + +D Y++YTSG+TG+ PKG+ + H
Sbjct: 73 AERLAYMLEDSGAKLLLTDPDDLAYVIYTSGSTGR------------PKGV---MVEHRG 117
Query: 295 IATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPS 354
+ L + Y + D + + I + PL +G T V+ P+ DP
Sbjct: 118 LVNLLAWLQERYGLTAGDRVLQFASFSFDASVWEI-FPPLLSGATLVLAP--PEVLRDPE 174
Query: 355 QYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNW 413
++ H++ L P+ LR + + + L SLR + V GE E + W
Sbjct: 175 ALAELLREHRITVLHLVPSLLRALLDALEPAAL------PSLRLVIVGGEALPAELVRRW 228
Query: 414 AEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYST---GLPFPGY 460
E ++N + TET T ++ D + G P
Sbjct: 229 RELFPGARLVNAYGPTET----TVDVTYHEVDPDDLDGGSVPIGRPIANT 274
Score = 59.8 bits (146), Expect = 2e-09
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
VA++ + +TY EL E+ + LA L A GV GD V I + PE +V++LA
Sbjct: 3 AVAVVFGD------QSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILA 56
Query: 154 TVRLGA 159
++ GA
Sbjct: 57 VLKAGA 62
Score = 32.8 bits (76), Expect = 0.63
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 542 QRFMKIYFTKFPG--YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSH 599
+RF+ F PG Y T D + +G + R DD + + G+R+ +E +L+H
Sbjct: 314 ERFVPDPFGG-PGERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGEIEAALLAH 372
Query: 600 PDVGDTAVIGVPEPTKG 616
P V + V+ +
Sbjct: 373 PGVREAVVVAREDGAGE 389
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 84.7 bits (210), Expect = 6e-17
Identities = 54/174 (31%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+TY EL E+V LA L ++G+ AGDRV I+ PE ++ LA + LGA+ ++
Sbjct: 44 EAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYST 103
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDY--CIIFQRRC 225
+L L ++ KVI VE + ++ LE D I R
Sbjct: 104 STPEQLAYILNESESKVIF-----VENQE---LLDLVLPVLEDCPKVVDLIVIIDLVREA 155
Query: 226 VEEAELT----PGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
VE L P I + L R P + +D I+YTSGTTG P+G
Sbjct: 156 VEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGV 209
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 531 PGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVI------NVAG 584
P M YK P+ + FT+ G++ T D G DE+GY+ +T R ++I N+A
Sbjct: 428 PNVMKGYYKNPEATAEA-FTE-DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIA- 484
Query: 585 HRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
+E + P + V+G +
Sbjct: 485 ----PEPIESKLAKSPLIEQICVVGDDKK 509
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 84.1 bits (208), Expect = 6e-17
Identities = 112/515 (21%), Positives = 177/515 (34%), Gaps = 109/515 (21%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++TY+EL+ +V +A L A GV RV + P +A++++LA RLGA+ +++
Sbjct: 28 RLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRL 87
Query: 169 AA---RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC 225
EL R E +IA V I ++
Sbjct: 88 KPAEIAELIKRGEMTA--AVIAVDAQVMD--------------AIFQSGSGVRVLA---- 127
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPK 285
+ G + P E P ++ YTSGTTG P+G + + +
Sbjct: 128 -LGDLVGLGEPESAGPPIEDP------PREPEQPAFVFYTSGTTGLPKGAVIPQRAAESR 180
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
L + G+ +V + V+G + LA T V
Sbjct: 181 -----------VLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYV---- 225
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
DP+ ++I +V LF PT L + + GA DSL ++ AG
Sbjct: 226 -VVEEFDPADALKLIEQERVTSLFATPTHLDAL----AAAAEGAPLKLDSLEHVTFAGAT 280
Query: 406 CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
+ +N + TE +S+ Y D P+ T + PG+
Sbjct: 281 MPDAVLERVNQHLPGEKVNIYGTTEAMNSL------YMRD---PRTGTEMR-PGFFS--- 327
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE---PHELGR 522
EVRI+R GS E E G
Sbjct: 328 --------------------------------------EVRIVRIGGSPDEALPNGEEGE 349
Query: 523 IVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINV 582
+VV T + PQ + G+Y T D D +G + + R DD+I
Sbjct: 350 LVVAAA--DATFTGYLNQPQATAE---KLQDGWYRTSDVAVVDPSGTVRILGRVDDMIIS 404
Query: 583 AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
G + S +E V+ P V + VIG+P+ G+
Sbjct: 405 GGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQ 439
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 83.4 bits (207), Expect = 7e-17
Identities = 97/376 (25%), Positives = 144/376 (38%), Gaps = 102/376 (27%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW-WT 316
DP I+YTSGTTG+P KG++ H A +++ + W WT
Sbjct: 89 DPALIIYTSGTTGRP------------KGVVLT---HGNLAANARALV------EAWRWT 127
Query: 317 ASDM-----------GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKV 365
ASD+ G + PL AG + DP + + ++
Sbjct: 128 ASDVLLHALPLHHVHGLFNA----LHCPLWAGASVEFL-----PRFDPQERDALRLLPRI 178
Query: 366 NGLFTAPTA-LRVIRREDKDSTLGAQYSTDSLRYLFVAGEH-CDHETKNWAEKSFNVTML 423
PT R++ E + A + +LR LFV+G E+ T+L
Sbjct: 179 TVFMGVPTIYTRLL--EHYEFDDAAAAAARNLR-LFVSGSAALPVPVLERWEERTGHTLL 235
Query: 424 NHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRIL 483
+ TETG +++ G + GLP PG
Sbjct: 236 ERYGMTETGMALSNPLDG-----ERRPGTVGLPLPG------------------------ 266
Query: 484 PESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPH-ELGRIVVKLPLPPGTMSTLYKAPQ 542
VEVRI+ DG E E+G I V+ P S + P+
Sbjct: 267 -------------------VEVRIVDEDGGEPLAAGEVGEIQVRGP---NVFSEYWNKPE 304
Query: 543 RFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR-DDDVINVAGHRLSTSALEDVVLSHPD 601
FT+ G++ T D G DE+GY + R DD+I G+++S +E+ +L HP
Sbjct: 305 A-TAEAFTE-DGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPG 362
Query: 602 VGDTAVIGVPEPTKGE 617
V + AVIGVP+P GE
Sbjct: 363 VAEVAVIGVPDPDWGE 378
Score = 58.0 bits (141), Expect = 9e-09
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
++AL+ R +TY EL + LA +L A+G+ GDRV + P E +V LA
Sbjct: 2 RIALVDGG------RSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLA 55
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVII 186
R G + + + A EL L ++P +++
Sbjct: 56 IWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV 88
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 82.9 bits (205), Expect = 1e-16
Identities = 75/270 (27%), Positives = 111/270 (41%), Gaps = 40/270 (14%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
T+ EL ++V+ LAG+L+ GV GDRVLI M E + S+LA LGAI
Sbjct: 41 NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAI------- 93
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL-NEALEISSCKPDYCIIFQRRCV 226
A + RL + ++ + CG VV + L A + P +
Sbjct: 94 --AVPVNFRLTPPEIAFLV-SDCGA---HVVVTEAALAPVATAVRDIVPLLSTVVVAGGS 147
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
+ + GY+ L +A +H V + + P I+YTSGTTG+P+G
Sbjct: 148 SDDSVL-GYEDLLAEAGP---AHAPVDIPNDSPALIMYTSGTTGRPKGA----------- 192
Query: 287 ILRPVGGHIATLAWTMSVIYNMGQD---DVWWTASDMGWVVGHSYICYGPLAAGITSVMY 343
V H M+ + G D DV + + + G + G L G +V+Y
Sbjct: 193 ----VLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPG-LLLGAPTVIY 247
Query: 344 EGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
P DP Q V+ KV G+F P
Sbjct: 248 ---PLGAFDPGQLLDVLEAEKVTGIFLVPA 274
Score = 61.3 bits (149), Expect = 1e-09
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
+V R++ + ++ E+G IV Y+AP M Y+ +
Sbjct: 353 TVAARVVDENMNDVPVGEVGEIV-------------YRAPT-LMSGYWNNPEATAEAFAG 398
Query: 562 GYY--------DENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ DE GY++V R D+I G + + +E+V+ SHPD+ + AVIG +
Sbjct: 399 GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADE 458
Query: 614 TKGEIP 619
GE+P
Sbjct: 459 KWGEVP 464
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 82.4 bits (204), Expect = 3e-16
Identities = 88/341 (25%), Positives = 148/341 (43%), Gaps = 55/341 (16%)
Query: 30 DAYRKSIEAPESFWTDV-GNMA-TWSKKWDRILDNSDQ--PFTKWFVGGEINACYNAIDR 85
+ R S+E PE +W+ V ++ +S ILD SD+ P +W G +N +
Sbjct: 124 EFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQWLPGAVLNVAECCLTP 183
Query: 86 HVERGMAKKVALI------HDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLI 139
+ +A+I D PV ++T +EL+ QVS +A +L A+G GD + I
Sbjct: 184 KPSK-TDDSIAIIWRDEGSDDLPV----NRMTLSELRSQVSRVANALDALGFEKGDAIAI 238
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR 199
MP+ A++ LA + G + + FA E+ RL+ +K K I V K +
Sbjct: 239 DMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSI- 297
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
+ + +E + P ++ +L G D+ WDD LA R + P E
Sbjct: 298 --PLYSRVVEAKA--PKAIVLPADGKSVRVKLREG-DMSWDDFLA-RANGLRRPDEYK-A 350
Query: 260 LY--------ILYTSGTTGKPQG-----CSELRSEDQPKGILRPVGGHIATLAWTMSVIY 306
+ IL++SGTTG+P+ + LR+ A AW
Sbjct: 351 VEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRA---------------AADAWAHL--- 392
Query: 307 NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP 347
++ + D+ +++GW++G ++ Y L G T +Y G P
Sbjct: 393 DIRKGDIVCWPTNLGWMMGP-WLVYASLLNGATLALYNGSP 432
Score = 33.5 bits (77), Expect = 0.51
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 528 PLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE-----NGYIYVTARDDDVINV 582
PL G STL A K+YF P + + + D GY R DD +N+
Sbjct: 560 PLMFGASSTLLNADHY--KVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNL 617
Query: 583 AGHRLSTSALEDVV-LSHPDVGDTAVIGVPEPTKG 616
G ++S+ +E V + V +TA IGVP P G
Sbjct: 618 GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGG 652
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 80.9 bits (200), Expect = 7e-16
Identities = 76/319 (23%), Positives = 130/319 (40%), Gaps = 48/319 (15%)
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
R +R +AL+ R T+ E+ +V LA +LAA GV GDR+L++
Sbjct: 19 RFPDR-----IALVWGD------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNC 67
Query: 145 PEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL 204
+ SM A RLGA+ E+ E + + +I + E VR
Sbjct: 68 NQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVR----- 122
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILY 264
+ +++ + A Y+ L L R V+ +DP + +
Sbjct: 123 AASPDLTHVVA----------IGGARAGLDYEALVARHLGAR--VANAAVDHDDPCWFFF 170
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
TSGTTG+P+ + + + Q + + H+A L + + D + +
Sbjct: 171 TSGTTGRPK--AAVLTHGQMAFV---ITNHLADL------MPGTTEQDASLVVAPLSHGA 219
Query: 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKD 384
G +C +A G +V+ P DP++ + ++ H+V LFT PT L+++ E
Sbjct: 220 GIHQLC--QVARGAATVLL---PSERFDPAEVWALVERHRVTNLFTVPTILKML-VEHPA 273
Query: 385 STLGAQYSTDSLRYLFVAG 403
+Y SLRY+ AG
Sbjct: 274 V---DRYDHSSLRYVIYAG 289
Score = 70.5 bits (173), Expect = 1e-12
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 501 TSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMD 560
T +EV+I ++G E P E G I V + P + Y P+ K + G++ T D
Sbjct: 347 TGMEVQIQDDEGRELPPGETGEICV---IGPAVFAGYYNNPEANAKAFRD---GWFRTGD 400
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEI 618
G+ D G++Y+T R D+ G + +E+ +L+HP V + AV+GVP+P GE+
Sbjct: 401 LGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEV 458
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 80.9 bits (200), Expect = 7e-16
Identities = 123/535 (22%), Positives = 178/535 (33%), Gaps = 95/535 (17%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+D H R VALI D R ++ AEL+ V LA LAA GV GDRV +++P
Sbjct: 16 LDAHA-RARPDAVALI-DED-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLP 68
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPN-KVVRYK 201
E +V LA RLGA V + + E+ L + + ++ V P K + +
Sbjct: 69 NCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLV-----VWPGFKGIDFA 123
Query: 202 TILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP-- 259
IL + P I + + AL A DP
Sbjct: 124 AILAAV-PPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPDA 182
Query: 260 LYILY-TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318
+L+ TSGTT P+ L Q +LR H A ++ Y V A
Sbjct: 183 GALLFTTSGTTSGPK----LVLHRQ-ATLLR----H----ARAIARAYGYDPGAVLLAAL 229
Query: 319 DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378
V G S + G LA G V D ++ R + H+V F LR I
Sbjct: 230 PFCGVFGFSTLL-GALAGGAPLVCEP-----VFDAARTARALRRHRVTHTFGNDEMLRRI 283
Query: 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAH 438
T G + S R A SF
Sbjct: 284 LD-----TAGERADFPSARLFGFA--------------SF-------------------- 304
Query: 439 CLGYQHDTVPPKYSTGLPFPG-YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
+ + G+P G Y V ++ P S+R G
Sbjct: 305 -APALGELAALARARGVPLTGLYGSSEVQALVALQ-------PATDPVSVRIE---GGGR 353
Query: 498 THFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556
VR DG+ E G I ++ P M P + T GY+
Sbjct: 354 PASPEARVRARDPQDGALLPDGESGEIEIR---APSLMRGYLDNPDATARA-LTD-DGYF 408
Query: 557 DTMDAGYY-DENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
T D GY + ++Y T R D + + G ++ + +E + + P V V+G
Sbjct: 409 RTGDLGYTRGDGQFVYQT-RMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGA 462
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 80.4 bits (199), Expect = 1e-15
Identities = 76/297 (25%), Positives = 115/297 (38%), Gaps = 59/297 (19%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
+ A+++ R+ TY E ++ LA +L+ +G+ GD V + P P + +
Sbjct: 20 RTAVVYGD------RRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFG 73
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
GA+ + A ++ L H++ KV+ + ++ EAL + S
Sbjct: 74 VPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQ---------EFLSLAEEALALLST 124
Query: 214 KP--DYCIIFQRRCVEEAELTPGYDILWD---DALAQRLSHRCVPVEANDPLYILYTSGT 268
K D II E++E D+L D L P + DP+ + YTSGT
Sbjct: 125 KEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIP------PDDEWDPISLNYTSGT 178
Query: 269 TGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN-MGQDDVW-WTASDM---GWV 323
TG PKG++ G A L +VI M V+ WT GW
Sbjct: 179 TG------------NPKGVVYTHRG--AYLNALGNVIEWGMPDRPVYLWTLPMFHCNGW- 223
Query: 324 VGHSYICY--GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378
C+ A G T V R D Y +I HKV L APT L ++
Sbjct: 224 ------CFPWAITAVGGTHVCL-----RKVDAPAIYDLIEKHKVTHLCGAPTVLNML 269
Score = 62.3 bits (152), Expect = 4e-10
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 483 LPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPH---ELGRIVVKLPLPPGTMSTLYK 539
LP R + Q + EV ++ + + P +G IV++ G
Sbjct: 333 LPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMR-----GNT----- 382
Query: 540 APQRFMKIYFTKFP---------GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTS 590
MK Y+ K P G++ + D +GYI + R D+I G +S+
Sbjct: 383 ----VMKGYY-KNPEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSI 437
Query: 591 ALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIK 625
+E V+ HP V + AV+ P+ GE P C ++
Sbjct: 438 EVEGVLYKHPAVLEAAVVARPDEKWGETP-CAFVV 471
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 80.6 bits (199), Expect = 1e-15
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
+ T+ +L + V LA L A+GV GDRV I+ P E +++ AT R+GAI + +
Sbjct: 45 RYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAY 104
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEAL-EISSCKPDYCII----FQR 223
A EL L + + +I A + K Y +L E L ++ +P R
Sbjct: 105 RASELEYALGQSGVRWVICA----DAFKTSDYHAMLQELLPGLAEGQPGALACERLPELR 160
Query: 224 RCVEEAELTPGYDILWDDALA-------QRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
V A P + W + A + L+ R ++ +DP+ I YTSGTTG P+G
Sbjct: 161 GVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKG 218
Score = 54.8 bits (132), Expect = 1e-07
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553
G+ H +EV+++ DG+ E+G + + M + P+ +
Sbjct: 376 GRTQPH---LEVKVVDPDGATVPRGEIGELCTRGYS---VMKGYWNNPEATAESIDED-- 427
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+ T D DE GY+ + R D+I G + +E+ + +HP V D V GVP+
Sbjct: 428 GWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDE 487
Query: 614 TKGE 617
GE
Sbjct: 488 KYGE 491
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 79.7 bits (197), Expect = 1e-15
Identities = 87/373 (23%), Positives = 135/373 (36%), Gaps = 87/373 (23%)
Query: 255 EANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314
E +D I YTSGTTG P+GC + +AT A + + D V
Sbjct: 82 ELDDVAVIPYTSGTTGLPKGC------------MHTHRTVLATAA-ASAAWSGLTPDSVL 128
Query: 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA 374
+ V G P+ G T V+ + DR R I ++V T
Sbjct: 129 LAFLPLFHVAGMQGSMNAPIYTGATLVLL-TRWDREAAA----RAIERYRVTHWTNIVTM 183
Query: 375 LRVIRREDKDSTLG-AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH---WWQTE 430
+ + + A Y SL+ + G AE+ +T L + + TE
Sbjct: 184 VVDLL-----AHPRFADYDLSSLKVVGGGGAAL---PPAVAERLKALTGLLYEEGYGLTE 235
Query: 431 TGHSITAHCLGYQHDTVP--PKYST-GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
T H+ T H P PK G+P G D + ++ PE+
Sbjct: 236 T-HTCT-------HFNPPDRPKPQCLGIPVFGTDARVID-----------------PETG 270
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
E P E G IVV+ P + P+ +
Sbjct: 271 E-------------------------ELPPGEEGEIVVR---GPQVFKGYWNRPEATAES 302
Query: 548 YFT-KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTA 606
+ ++ T D GY DE GY + R +INV+G+++ + +E ++ HP V +
Sbjct: 303 FIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVC 362
Query: 607 VIGVPEPTKGEIP 619
VIG P+P +GE+
Sbjct: 363 VIGRPDPRRGEVV 375
Score = 60.0 bits (146), Expect = 2e-09
Identities = 31/80 (38%), Positives = 42/80 (52%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TYAEL E V LAG L GV GDRV +YM P+ +++ A +R GA+ V
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 170 ARELCARLEHAKPKVIIAAS 189
EL L + +V+I S
Sbjct: 62 EAELEHILNDSGARVLIVGS 81
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 79.9 bits (198), Expect = 1e-15
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+++TYAEL +V A +LAA+G+ GDRV I+ P P +++ L ++ GA+ +
Sbjct: 29 QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTR 88
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKP--DYCIIFQRRC 225
+ A E L K + L ++ P ++ +I +
Sbjct: 89 YTADEAAYILARGDAKALFVLG------------LFLGVDYSATTRLPALEHVVICE--- 133
Query: 226 VEEAELTPGYDILWDDALAQ-RLSHRCVPVEANDPLYILYTSGTTGKPQG 274
EE + + D LA + R V+ +D IL+TSGTTG+P+G
Sbjct: 134 TEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKG 183
Score = 68.4 bits (168), Expect = 5e-12
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
RK V G T VE +I+ G E E+G ++V+ P M Y P+
Sbjct: 332 RKTVA-GTIGTAIAGVENKIVNELGEEVPVGEVGELLVR---GPNVMKGYYDDPEA---- 383
Query: 548 YFT----KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
T G+ T D G DE GY+Y+ R D+ V G + + +E+V+ HP V
Sbjct: 384 --TAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVA 441
Query: 604 DTAVIGVPEPTKGE 617
+ AVIGVP+ GE
Sbjct: 442 EAAVIGVPDERLGE 455
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 78.8 bits (195), Expect = 3e-15
Identities = 75/297 (25%), Positives = 111/297 (37%), Gaps = 47/297 (15%)
Query: 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP 145
V + +VAL+ R++TYAEL+E+ + LA L A G+ GD V IY
Sbjct: 11 AVADAVPDRVALVCGD------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRI 64
Query: 146 EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILN 205
E + +ML + A+ V + EL L+ + ++ + +
Sbjct: 65 EYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYER---------EFAPRVA 115
Query: 206 EALEISSCKPDYCIIFQRRCVE----EAELTPGYDILWDDALAQRLSHRCVPVEANDPLY 261
E L K + VE L D ++DALA R + D LY
Sbjct: 116 EVLP-RLPKLRTLV-----VVEDGSGNDLLPGAVD--YEDALAAGSPERDFGERSPDDLY 167
Query: 262 ILYTSGTTGKPQGCSELRSED----QPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317
+LYT GTTG P+G R ED G G I ++ G + A
Sbjct: 168 LLYTGGTTGMPKGVM-WRQEDIFRVLLGGRDFATGEPIEDE-EELAKRAAAGPGMRRFPA 225
Query: 318 SDM--G---WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
+ G W + L +G T V+ PD D + +R I KVN +
Sbjct: 226 PPLMHGAGQWAA------FAALFSGQTVVLL---PDVRFDADEVWRTIEREKVNVIT 273
Score = 42.6 bits (101), Expect = 6e-04
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 491 VPKGQNATHFTSVEVR----IIRNDGSECEP--HELGRIVVKLPLPPGTMSTLYKAPQRF 544
V KG T + ++ DG+ EP E+G I + +P G YK P++
Sbjct: 342 VAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLG----YYKDPEKT 397
Query: 545 MKIYFTK------FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLS 598
+ + T PG ++A G I + R IN G ++ +E+ + +
Sbjct: 398 AETFPTIDGVRYAIPGDRARVEAD-----GTITLLGRGSVCINTGGEKVFPEEVEEALKA 452
Query: 599 HPDVGDTAVIGVPEPTKGE 617
HPDV D V+GVP+ G+
Sbjct: 453 HPDVADALVVGVPDERWGQ 471
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 78.1 bits (193), Expect = 4e-15
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
E++I DG P E G IVVK P + + G++ T D
Sbjct: 315 PCELKI-EKDGVVVPPFEEGEIVVK---GPNVTKGYLNREDATRETFQD---GWFKTGDI 367
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
GY DE G++YV R D+I G + + +E+V+LSHP V + V+GVP+ G++P
Sbjct: 368 GYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVP-V 426
Query: 622 LYIKKRIPLDK 632
++ K + +
Sbjct: 427 AFVVKSGEVTE 437
Score = 63.8 bits (156), Expect = 1e-10
Identities = 59/217 (27%), Positives = 89/217 (41%), Gaps = 61/217 (28%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVF-- 165
+KVT+ EL E V +AG LAA+GV GDRV + M E I+ + A +LGA+ V
Sbjct: 26 KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAV--AVLLN 83
Query: 166 GGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC 225
+ EL +L+ A+ K +I D+
Sbjct: 84 TRLSREELLWQLDDAEVKCLITD--------------------------DDF-------- 109
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEA---NDPLYILYTSGTTGKPQGCSELRSED 282
EA+L PG + + + + E ++ I+YTSGTTGK
Sbjct: 110 --EAKLIPGISVKFAELMNGPKEEA-EIQEEFDLDEVATIMYTSGTTGK----------- 155
Query: 283 QPKGILRPVGGHIATLAWTMSVIYNMG--QDDVWWTA 317
PKG+++ G H + + N+G +DD W A
Sbjct: 156 -PKGVIQTYGNHWWS---AVGSALNLGLTEDDCWLAA 188
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 78.4 bits (194), Expect = 4e-15
Identities = 70/291 (24%), Positives = 101/291 (34%), Gaps = 59/291 (20%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
K AL+ R TYAEL V+ +A +L +G+ GDRV + LA
Sbjct: 27 KTALVFGD------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA 80
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
R GA+H V EL L+H+ + + AL +
Sbjct: 81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPT---------AEAALALLPV 131
Query: 214 KPDYCIIFQRRCVEEAELTPGYDILWDDAL-AQRLSHRCVPVEANDPLYILYTSGTTGKP 272
V PG + + D A ++ V + +D ILYTSGT P
Sbjct: 132 DT-----LILSLVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLP 186
Query: 273 QGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHS---YI 329
+G + H A +A +S I +A D + H+ Y
Sbjct: 187 KGA---------------MLTHRALIAEYVSCIVAGD-----MSADD---IPLHALPLYH 223
Query: 330 C------YGP-LAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
C GP L G T+V+ + PDP R I ++ F PT
Sbjct: 224 CAQLDVFLGPYLYVGATNVILDA-----PDPELILRTIEAERITSFFAPPT 269
Score = 73.8 bits (182), Expect = 1e-13
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 24/120 (20%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP--------- 553
VE R++ +DG++ P E+G IV +++PQ M Y+ P
Sbjct: 350 VETRVVDDDGNDVAPGEVGEIV-------------HRSPQ-LMLGYWDD-PEKTAEAFRG 394
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ + D G DE GYI V R D+I G +++ +E+ + +HP V + AVIG+P+P
Sbjct: 395 GWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDP 454
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 78.9 bits (195), Expect = 5e-15
Identities = 71/342 (20%), Positives = 114/342 (33%), Gaps = 89/342 (26%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ +Y E++EQV LA L GV GD V + +P +++ A V GA + G
Sbjct: 482 YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTG 541
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ L LE A+P ++I + + D +
Sbjct: 542 YPDDRLKMMLEDARPSLLITTA-------------------DQLPRFADVPDLT------ 576
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
+ Y+ A L + + YI++TSG+TG+P+G
Sbjct: 577 ----SLCYNAPLAPQGAAPL----QLSQPHHTAYIIFTSGSTGRPKGV------------ 616
Query: 288 LRPVGGHIAT---LAWTMSVIYNMGQDDV----------------WWTASDMGWVVGHSY 328
+ G A L W M Y + DDV +W
Sbjct: 617 ---MVGQTAIVNRLLW-MQNHYPLTADDVVLQKTPCSFDVSVWEFFW------------- 659
Query: 329 ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388
P AG VM +P+ DP + + V P+ L + G
Sbjct: 660 ----PFIAGAKLVM--AEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVAS--LTPEG 711
Query: 389 AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTE 430
A+ S SLR +F +GE + ++ + N + TE
Sbjct: 712 ARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTE 753
Score = 30.0 bits (68), Expect = 5.9
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 528 PLPPGTMSTLYKA---------------PQRFMKIYFTKFPG--YYDTMDAGYYDENGYI 570
P+PPG LY RF+ F PG Y T D + ++G +
Sbjct: 796 PVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFA--PGERMYRTGDVARWLDDGAV 853
Query: 571 YVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
R DD + + G R+ ++ + + PDV + AV
Sbjct: 854 EYLGRSDDQLKIRGQRIELGEIDRAMQALPDV-EQAVT 890
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 76.4 bits (189), Expect = 2e-14
Identities = 68/296 (22%), Positives = 108/296 (36%), Gaps = 89/296 (30%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
+AL++ R +TYAEL E+ + LA L A GV GD V + + PE +V++LA
Sbjct: 3 AIALVYGD------RSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILA 56
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
++ GA + L+ A P L LE S
Sbjct: 57 ILKAGAAY-------------VPLDPAYP------------------AERLAFMLEDSGA 85
Query: 214 KPDYCIIFQRRCVEEAELT-PGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKP 272
+ ++ A IL ++ A+ V+A+D Y++YTSG+TG+P
Sbjct: 86 R---VLLTDESLAPLARADQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTGRP 142
Query: 273 QG-CSELRSEDQPKGILRPVGG-------------HIATLAWTMSVIYNMGQDDVWWTAS 318
+G R G++R V ++ L++ S ++W
Sbjct: 143 KGVAVPHR------GVVRLVRNTNYIALDPDDRFLQLSPLSFDASTF------EIW---- 186
Query: 319 DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTP-DPSQYYRVIHNHKVNGLF-TAP 372
G L G V+ T DP + R+I V L+ TA
Sbjct: 187 -------------GALLNGGRLVLI---DKETLLDPDRLARLIAEQGVTVLWLTAA 226
Score = 42.2 bits (100), Expect = 9e-04
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT 614
Y T D + +G I R D + + G R+ +E +L HP V + AV+ V E
Sbjct: 359 LYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVL-VREDA 417
Query: 615 KGEIPFCLYIKKRIPLD 631
G+ Y+ R LD
Sbjct: 418 AGDKRLVAYVVARGALD 434
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 75.2 bits (185), Expect = 4e-14
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 21/135 (15%)
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM-------KIYFTKF 552
F +V+VRI G E + E+G + VK +PQ FM
Sbjct: 313 FHNVQVRICNEAGEEVQKGEIGTVYVK-------------SPQFFMGYIIGGVLARELNA 359
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
G+ D GY DE G+IY+ R+ ++I G + +E V+ HP V + VIGVP+
Sbjct: 360 DGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPD 419
Query: 613 PTKGEIPFCLYIKKR 627
GE P IK
Sbjct: 420 SYWGEKP-VAIIKGS 433
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 74.9 bits (185), Expect = 4e-14
Identities = 66/313 (21%), Positives = 115/313 (36%), Gaps = 66/313 (21%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
A+I + +TY EL + + +A +L A GV+ GD V + MP E IV++L
Sbjct: 3 ATAVIDGA------GTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLG 56
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
+ GA + V I E R IL A
Sbjct: 57 ILLAGAAY----------------------VPIDPDQPAE-----RRAAILARA----GA 85
Query: 214 KPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQ 273
+ ++ + E + D A A+ + V+ +D Y+++TSG+TG+
Sbjct: 86 R---AVLTDPGLAQPEEAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGE-- 140
Query: 274 GCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW---VVGHSYIC 330
PKG++ + T+ + +G D S + + V Y
Sbjct: 141 ----------PKGVMITHRAAVNTILDVNRR-FGVGPADRVLALSALHFDLSV----YDI 185
Query: 331 YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQ 390
+G L+AG V+ + R DP + ++ H V + P + ++ A
Sbjct: 186 FGALSAGAALVLPD--EARRRDPDHWAELVQRHGVTVWNSVPALMDML----LTYAEDAA 239
Query: 391 YSTDSLRYLFVAG 403
SLR + ++G
Sbjct: 240 RLLPSLRLVMLSG 252
Score = 34.9 bits (81), Expect = 0.15
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
Y T D G Y +G I R D + + G+R+ +E + HP V V+ V +
Sbjct: 361 YRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAALARHPGVQRAVVVVVGDG 418
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 74.6 bits (184), Expect = 7e-14
Identities = 123/554 (22%), Positives = 195/554 (35%), Gaps = 134/554 (24%)
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
+A+ R+ + AL+ ++TY +L +++S + A+G+ GD V +
Sbjct: 20 SALKRY-----PDRPALVLGD------TRLTYGQLADRISRYIQAFEALGLGTGDAVALL 68
Query: 141 MPLIPEAIVSMLATVRLG----AIHSVVFGGFAARELCA-RLEHAKPKVIIAASCGVEPN 195
PE ++++ A G A+H + + + A LE A +I V+P
Sbjct: 69 SLNRPEVLMAIGAAQLAGLRRTALHPL-----GSLDDHAYVLEDAGISTLI-----VDPA 118
Query: 196 KVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVE 255
V AL + + P + V + D+L A A+ V
Sbjct: 119 PFV------ERALALLARVPSLKHVLTLGPVPDGV-----DLL--AAAAKFGPAPLVAAA 165
Query: 256 A-NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314
D + YT GTTGK PKG++ H + TM+ I
Sbjct: 166 LPPDIAGLAYTGGTTGK------------PKGVMGT---HRSI--ATMAQI--------- 199
Query: 315 WTASDMGWVVGHSYICYGPL--AAGIT---SVMYEGKPDRTP--DPSQYYRVIHNHKVNG 367
++ W ++ PL A G +++ G DP++ R I ++
Sbjct: 200 -QLAEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITA 258
Query: 368 LFTAPTALRVIRREDKDSTLGAQYSTD--SLRYLFVAGEHCDHETKNWAEKSFNVTMLNH 425
F PT + + T D SL ++ A + F +
Sbjct: 259 TFLVPTMIYALLDHPDLRT------RDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQY 312
Query: 426 WWQTETGHSITAHCLGYQHDTVPPKY--STGLPFPGYDGKYVNIVMLNWLDGRAHCVRIL 483
+ QTE IT + HD PK S G P PG V +L
Sbjct: 313 YGQTEAPMVIT-YLRKRDHDPDDPKRLTSCGRPTPGLR------------------VALL 353
Query: 484 PESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQR 543
E R+ V +G E+G I V+ PL M + P+
Sbjct: 354 DEDGRE-VAQG------------------------EVGEICVRGPL---VMDGYWNRPEE 385
Query: 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
+ G+ T D DE+G+ Y+ R D+I G + +EDV+ HP V
Sbjct: 386 TAE---AFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVA 442
Query: 604 DTAVIGVPEPTKGE 617
AVIGVP+ GE
Sbjct: 443 QVAVIGVPDEKWGE 456
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 73.6 bits (181), Expect = 2e-13
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
EVR++ DG+ P E+G ++ + P T+ Y+AP+ + + G+Y + D
Sbjct: 369 EVRVVDADGNPVAPGEVGELLTRGPY---TIRGYYRAPEHNARAFDAD--GFYRSGDLVR 423
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623
D +GY+ V R D IN G +++ +E+++L HP V D A++ +P+ GE C +
Sbjct: 424 RDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE-KSCAF 482
Query: 624 IKKRIP 629
I + P
Sbjct: 483 IVVKEP 488
Score = 64.4 bits (157), Expect = 1e-10
Identities = 78/354 (22%), Positives = 123/354 (34%), Gaps = 62/354 (17%)
Query: 66 PFTKWFVGGEINACYNA----IDRHVERGMAKKVALIHDSP-VTKSIRKVTYAELQEQVS 120
FT W E Y DR + + A D V R+++YAEL ++
Sbjct: 7 GFTPW--PEEFARRYREKGYWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRAD 64
Query: 121 LLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHA 180
LA L +G+ GD VL+ +P + E ++ A +RLG + A EL A
Sbjct: 65 RLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQI 124
Query: 181 KPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWD 240
+ ++I A + Y+ E + + I+ + + +
Sbjct: 125 EAALLIVA----RQHSGFDYRPFARELVAKHPTLR-HVIVAGE---------AEHPSVLE 170
Query: 241 DALAQRLSHR--CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL 298
AL P +A + + + GTTG PK I R + ++
Sbjct: 171 AALCHPAGLFTPAPPADAGEVAFFQLSGGTTG------------TPKLIPRTHNDYYYSV 218
Query: 299 AWTMSV-IYNMGQDDVWWTASDMGWVVGHSYICYGPLAA-GITSVMYEG-----KPDRTP 351
S I Q V+ A H++ PL++ G V G PD P
Sbjct: 219 --RASAEICGFDQQTVYLCALPA----AHNF----PLSSPGALGVFLAGGTVVLAPD--P 266
Query: 352 DPSQYYRVIHNHKVN--GLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
P + +I H V L +L + E + + L SLR L V G
Sbjct: 267 SPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLS------SLRLLQVGG 314
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 73.3 bits (180), Expect = 2e-13
Identities = 118/514 (22%), Positives = 177/514 (34%), Gaps = 111/514 (21%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG-GFA 169
T+ EL E+ LA +L A+ + V I + ++LA R+GA ++ FA
Sbjct: 70 TWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGA-DILLLNTSFA 128
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV--- 226
L + +I + ++ AL + P R V
Sbjct: 129 GPALAEVVTREGVDTVIYDE---------EFSATVDRAL---ADCPQ-----ATRIVAWT 171
Query: 227 -EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPK 285
E+ +LT ++L QR + IL TSGTTG P+G RS
Sbjct: 172 DEDHDLT--VEVLIAAHAGQRPEPT--GRKGR---VILLTSGTTGTPKGAR--RSGPGGI 222
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
G L+ + A +VI + M G S + LAA + +
Sbjct: 223 GTLKAILDRTPWRAEEPTVI-----------VAPMFHAWGFSQLV---LAASLACTIVT- 267
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
R DP +I H+ GL P R D + + +YS SLR+ +G
Sbjct: 268 --RRRFDPEATLDLIDRHRATGLAVVPVMFD--RIMDLPAEVRNRYSGRSLRFAAASGSR 323
Query: 406 CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
+ F + N++ TE G TA
Sbjct: 324 MRPDVVIAFMDQFGDVIYNNYNATEAGMIATAT--------------------------- 356
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
P LR T E+RI+ D E E+G I V
Sbjct: 357 ------------------PADLRAAPDTAGRPAEGT--EIRILDQDFREVPTGEVGTIFV 396
Query: 526 KLPLPPGTMSTLYKAPQRFMKIYFTK--FPGYYDTMDAGYYDENGYIYVTARDDDVINVA 583
+ T Y + TK G+ + D GY DENG ++V RDD++I
Sbjct: 397 R----NDTQFDGYTSGS-------TKDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSG 445
Query: 584 GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
G + +E + +HPDV + AVIGV + G+
Sbjct: 446 GENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQ 479
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 72.9 bits (179), Expect = 2e-13
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 484 PESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPL--------PPGTMS 535
P+S+ K +P + EV ++R DGSEC P E G +V + L P T
Sbjct: 329 PDSIGKAIP---------NAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAE 379
Query: 536 TLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDV 595
P +++ + + + D DE G++Y R D++I +G+R+S + +E+V
Sbjct: 380 RFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEV 437
Query: 596 VLSHPDVGDTAVIGVPEPTKGE 617
+ V + GVP+PT G+
Sbjct: 438 AYATGLVAEAVAFGVPDPTLGQ 459
Score = 68.7 bits (168), Expect = 5e-12
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 18/182 (9%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
AL+H R +TYA L E+V LA L +G++ G+RV IY+ E + +M
Sbjct: 16 ATALVHHD------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFG 69
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
G + + A ++ L ++++ +S ++ + C
Sbjct: 70 AALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLH-----------PALPGC 118
Query: 214 KPDYCIIFQRRCVEEAELTPGYDIL-WDDALAQRLSHRCVPVEANDPLYILYTSGTTGKP 272
+I +E PG + W LA + PV +D ILYTSG+TG+P
Sbjct: 119 HDLRTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRP 178
Query: 273 QG 274
+G
Sbjct: 179 KG 180
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 71.6 bits (176), Expect = 5e-13
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGT-MSTLYKAPQRFMKIYFTKFPGYYDTMDAG 562
E I + E+G I +K +P T Y P+ K+ + G+ T D G
Sbjct: 350 EAEIRDDHNRPLPAGEIGEICIK-GVPGKTIFKEYYLDPKATAKVL--EADGWLHTGDTG 406
Query: 563 YYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
Y DE G+ Y R ++I G +S LE+++ +HP + D V+G+ + + E
Sbjct: 407 YVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDE 461
Score = 55.5 bits (134), Expect = 7e-08
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 21/186 (11%)
Query: 93 KKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSML 152
K ALI +S +R+ +Y EL E+++ A ++G+ GD+V +++ PE I
Sbjct: 22 HKTALIFES-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF 80
Query: 153 ATVRLGAIHSVVFGGFAARELCARLEHAKPKVII---AASCGV-EPNKVVRYKTILNEAL 208
++GAI +V + ARL + I+ AS V Y+ I E
Sbjct: 81 GLAKIGAI--MV-------PINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED- 130
Query: 209 EISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGT 268
++ C+ R + + + L A L + P+ +D IL+TSGT
Sbjct: 131 --ATPLRHICLT--RVALPADDGVSSFTQLKAQQPAT-LCYA-PPLSTDDTAEILFTSGT 184
Query: 269 TGKPQG 274
T +P+G
Sbjct: 185 TSRPKG 190
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 71.8 bits (177), Expect = 5e-13
Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 28/182 (15%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY E E+V LA L A+G+ GDRV I+ P +PE +++ AT ++GAI + +
Sbjct: 45 TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE-ALEISSCKPDY----------CI 219
E LE+A + A + K Y +L E A E+++C+P +
Sbjct: 105 SE----LEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRV 160
Query: 220 IFQRRCVEEAELTPGYDILWDDALA-------QRLSHRCVPVEANDPLYILYTSGTTGKP 272
IF E PG + +D+ LA L+ R ++ +DP+ I YTSGTTG P
Sbjct: 161 IFL-----GDEKHPGM-LNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFP 214
Query: 273 QG 274
+G
Sbjct: 215 KG 216
Score = 41.3 bits (98), Expect = 0.002
Identities = 38/145 (26%), Positives = 56/145 (38%), Gaps = 45/145 (31%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTL----YKAPQRFMKIYFTKFPGYYD- 557
+EV+I+ +P E G V P G L Y MK GY++
Sbjct: 380 LEVKIV-------DP-ETGETV-----PRGEQGELCTRGYSV----MK-------GYWND 415
Query: 558 ---------------TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV 602
T D DE GY+ + R D+I G + +E+ + +HP +
Sbjct: 416 PEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKI 475
Query: 603 GDTAVIGVPEPTKGEIPFCLYIKKR 627
D V+GVP+ GE C +I R
Sbjct: 476 QDVQVVGVPDEKYGEE-VCAWIILR 499
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 70.4 bits (173), Expect = 7e-13
Identities = 89/384 (23%), Positives = 134/384 (34%), Gaps = 102/384 (26%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWW 315
D LY+LYT GTTG P+G R ED I R + G AT T+ +
Sbjct: 4 DDLYMLYTGGTTGMPKGVM-WRQED----IFRVLLGGPDFATGEPTLEELAKQVAA---- 54
Query: 316 TASDMGWVVG----H---SYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGL 368
+ ++ H ++ L AG +V+ PD DP + +R + H+VN L
Sbjct: 55 GGAGTRFLPACPLMHGAGQWLALSALFAG-GTVVLL--PDDKFDPDRVWRTVEKHRVNTL 111
Query: 369 ------FTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKN-WAEKSFNVT 421
F P L + + Y SLR + +G E K E N+
Sbjct: 112 VIVGDAFARPL-LEALEAAGR-------YDLSSLRAISSSGAMWSPEVKQGLLELLPNLA 163
Query: 422 MLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVR 481
+++ +ETG G +TG G V
Sbjct: 164 LVDALGASETGG------GGSSVSRAGGASATGKFELG-----------------PDTVV 200
Query: 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEP--HELGRIVVKLPLPPGTMSTLYK 539
+ DGSE P E+G I +P G YK
Sbjct: 201 LDE--------------------------DGSEVPPGSGEVGWIARGGRVPLG----YYK 230
Query: 540 APQRFMKIYFTK------FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALE 593
P++ K + PG + ++A G I + R IN G ++ +E
Sbjct: 231 DPEKTAKTFREIDGVRYAVPGDFARVEAD-----GTITLLGRGSVCINTGGEKVFPEEVE 285
Query: 594 DVVLSHPDVGDTAVIGVPEPTKGE 617
+ + +HPDV D V+GVP+ G+
Sbjct: 286 EALKAHPDVADALVVGVPDERWGQ 309
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 70.7 bits (174), Expect = 8e-13
Identities = 73/387 (18%), Positives = 129/387 (33%), Gaps = 120/387 (31%)
Query: 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVG-GHIAT-LAWTMSVIYNMGQD 311
+ +D YIL+TSG+TGKP KG+ + ++A+ L W M +++ +
Sbjct: 94 ADPDDLAYILFTSGSTGKP------------KGV--QISHANLASFLDW-MVEDFDLTEG 138
Query: 312 DVW-------WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHK 364
DV+ + S + LA+G T +Y ++ DP + + H
Sbjct: 139 DVFSNQAPFSFDLSVFDL--------FPALASGAT--LYVIPKEQIADPLALFEFLKEHG 188
Query: 365 VNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLN 424
+ + P+ ++ L + S SLR GE +
Sbjct: 189 LTVWVSVPSFASLLLL---SRELNPE-SLPSLRTFLFCGE------------VLPKKLAK 232
Query: 425 HWWQ-------------TE-----TGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466
+ TE T + +T L +++ +P G P PG
Sbjct: 233 ALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLS-RNEPLP----IGYPKPGLRAL--- 284
Query: 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVK 526
I+ DG P E G +V+
Sbjct: 285 ----------------------------------------ILDEDGRPVPPGEEGELVI- 303
Query: 527 LPLPPGTMSTLYKAPQRFMKIYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGH 585
P P++ K +F +Y T D Y +++G + R D I + G+
Sbjct: 304 --AGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGY 361
Query: 586 RLSTSALEDVVLSHPDVGDTAVIGVPE 612
R+ +E + + P V + V+ VP+
Sbjct: 362 RIELEEIEAALRALPGVEEAVVLPVPK 388
Score = 55.3 bits (134), Expect = 7e-08
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+TYAEL+E+ LA L A+G AGD V +Y P+A ++LA ++ GA + +
Sbjct: 15 DTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPS 74
Query: 168 FAARELCARLEHAKPKVIIAA 188
A + LE A P ++A
Sbjct: 75 QPAERIAKILEAAGPAALVAD 95
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 70.6 bits (173), Expect = 1e-12
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
EVR++ + G+ P E G ++ + P T YKAP+ F G+Y T D
Sbjct: 362 EVRVVDDHGNPVAPGETGMLLTRGPY---TFRGYYKAPEHNAAA-FDA-EGFYYTGDLVR 416
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623
GYI V R D IN G +++ +E+++L+HP V D A++ +P+ GE C +
Sbjct: 417 LTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKS-CAF 475
Query: 624 IKKRIP 629
I R P
Sbjct: 476 IVVRDP 481
Score = 60.2 bits (146), Expect = 2e-09
Identities = 76/351 (21%), Positives = 128/351 (36%), Gaps = 58/351 (16%)
Query: 66 PFTKWFVGGEINACYNA----IDRHVERGMAKKVALIHDSP-VTKSIRKVTYAELQEQVS 120
FT W E+ Y D+ + + + A D+ + R+ +Y EL ++
Sbjct: 2 EFTPWPE--ELAERYREKGYWQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRAD 59
Query: 121 LLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAAR--ELCARLE 178
LA L +G+ GD ++ +P I E + A ++LG V F+ R EL A
Sbjct: 60 NLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAP--VLALFSHRKSELTAYAS 117
Query: 179 HAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238
+P + I + + Y + S II + E L
Sbjct: 118 QIEPALYIIDR----AHSLFDYDDFARQLQ--SKLPTLRNIIVAGQTGEAELF------L 165
Query: 239 WDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL 298
W ++ A+ + P ++++ + + G+TG PK I R + ++
Sbjct: 166 WLESPAEPVK--FPPTKSDEVAFFQLSGGSTG------------TPKLIPRTHNDYYYSV 211
Query: 299 AWTMSV-IYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG-----KPDRTPD 352
SV I + Q + A H+Y P A G V Y G PD P
Sbjct: 212 --RRSVEICWLTQQTRYLCALPA----AHNYPLSSPGALG---VFYAGGCVVLAPD--PS 260
Query: 353 PSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
P+ + +I HKV P A+ + + ++ SL+ L V G
Sbjct: 261 PTDCFPLIERHKVTVTALVPPAVALWM----QAASKSRADLSSLKLLQVGG 307
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 69.3 bits (170), Expect = 4e-12
Identities = 63/191 (32%), Positives = 87/191 (45%), Gaps = 34/191 (17%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
TYAEL +QV A L A+GV GDRV I +P P+ IV+ A +RLGA+ VV
Sbjct: 56 ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAV--VVEHN 113
Query: 168 --FAARELCARLEHAKPKVII----AASCGVEPNKVVRYKTILNEALEISSCKPDYCIIF 221
+ A EL E +V I A + +TI+ ++ + + P +
Sbjct: 114 PLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIV--SVNMIAAMP----LL 167
Query: 222 QRRCVE---------EAELT---PG---YDILWDDAL---AQRLSHRCVPVEANDPLYIL 263
QR + A LT PG ++ L D A+ +SH +D IL
Sbjct: 168 QRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHP--RPTPDDVALIL 225
Query: 264 YTSGTTGKPQG 274
YTSGTTGKP+G
Sbjct: 226 YTSGTTGKPKG 236
Score = 55.8 bits (135), Expect = 5e-08
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLY-KAPQRFMKIYFTK------- 551
F EVRI+ +P + +P G L + PQ F K Y+ +
Sbjct: 395 FPDTEVRIV-------DPEDPDET-----MPDGEEGELLVRGPQVF-KGYWNRPEETAKS 441
Query: 552 -FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
G++ T D +E+G+I + R ++I G + + +E+V+ HP V D AV+G+
Sbjct: 442 FLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGL 501
Query: 611 PEPTKGE 617
P E
Sbjct: 502 PREDGSE 508
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 68.8 bits (169), Expect = 5e-12
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 31/144 (21%)
Query: 484 PESLRKN------VPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMS-- 535
PE L + PKG V V+I+ +G+E +GRI V
Sbjct: 368 PEDLAEAPGTVGRPPKG--------VTVKILDENGNEVPRGVVGRIFVG-----NGFPFE 414
Query: 536 --TLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALE 593
T + Q G + D GY+DE+G ++V RDDD+I G + + +E
Sbjct: 415 GYTDGRDKQI--------IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVE 466
Query: 594 DVVLSHPDVGDTAVIGVPEPTKGE 617
D++ HPDV + AVIGV + G+
Sbjct: 467 DLLAGHPDVVEAAVIGVDDEEFGQ 490
Score = 67.6 bits (166), Expect = 1e-11
Identities = 70/301 (23%), Positives = 108/301 (35%), Gaps = 50/301 (16%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TYAEL EQ + LA L A+GV AGD V + ++++ A ++GA ++ GF+
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFS 134
Query: 170 ARELCARLEHAKPKVII-----AASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRR 224
+L K ++ P + R +
Sbjct: 135 GPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNP----------------- 177
Query: 225 CVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQP 284
++ + L D L S +P ++ TSGTTG P
Sbjct: 178 -DDDEPSGSTDETL--DDLIAGSSTAPLPKPPKPGGIVILTSGTTG------------TP 222
Query: 285 KGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDM--GWVVGHSYICYGPLAAGITSVM 342
KG RP +A LA +S + + + M H + +A G T V+
Sbjct: 223 KGAPRPEPSPLAPLAGLLSRV-PFRAGETTLLPAPMFHATGWAHLTLA---MALGSTVVL 278
Query: 343 YEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVA 402
R DP I HK L P L I + + A+Y T SL+ +FV+
Sbjct: 279 R-----RRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPE--VLAKYDTSSLKIIFVS 331
Query: 403 G 403
G
Sbjct: 332 G 332
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 68.5 bits (168), Expect = 5e-12
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
S E++++ +DG+E P E G + VK P M ++ P+ ++ G+ T D
Sbjct: 386 STEIKLVDDDGNEVPPGEPGELWVK---GPQVMLGYWQRPEATDEVIKD---GWLATGDI 439
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEI 618
DE G++ + R D+I V+G + + +EDVV+ HP V + A +GVP GE
Sbjct: 440 AVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEA 496
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 67.6 bits (166), Expect = 9e-12
Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 69/223 (30%)
Query: 255 EANDPLYILYTSGTTGKPQG--------CSELRSEDQPKGILRPVG-----GHIATLAWT 301
+DP Y++YTSG+TGKP+G C+ LR+E G + + A++A+
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAE----GAILGIRPGDRVLQFASIAFD 152
Query: 302 MSVIYNMGQDDVWWTASDMGWVVGHSYICYGP---LAAGITSVMYEGKPDRTPDPSQYYR 358
+S++ +++ T + G + + P + +
Sbjct: 153 VSIL------EIFTT-----LLAGGT-LVIPPEELRLEDLAEFLNR-------------- 186
Query: 359 VIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKN-WAEKS 417
+V P+ L ++ ED SLR L + GE C + W++
Sbjct: 187 ----LRVTVAHLTPSLLALLDPED----------VPSLRTLILGGEACPQALVDRWSKP- 231
Query: 418 FNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY 460
+LN + TE + TA + P + G P P Y
Sbjct: 232 --RRLLNTYGPTEATVTATAS----RLTPGKP-VNIGRPLPNY 267
Score = 51.8 bits (125), Expect = 8e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGA 159
+TYAEL + + LA L ++GV GD V + + P V++LA ++ GA
Sbjct: 16 GSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAILAVLKAGA 67
Score = 35.7 bits (83), Expect = 0.088
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
Y T D Y E+G + R DD + + G R+ +E V+ + P V AV+
Sbjct: 325 YRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVV 377
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 67.6 bits (165), Expect = 9e-12
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAG 562
VE+RI G P+ G I ++ P +K P++ + ++ ++ + D G
Sbjct: 328 VEIRIADGAGRWLPPNMKGEICMR---GPKVTKGYWKDPEKTAEAFYG---DWFRSGDVG 381
Query: 563 YYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
Y DE G++Y+T R D+I G +++S +E V+ P+V + AVIGV + GE
Sbjct: 382 YLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERI 438
Score = 55.7 bits (134), Expect = 5e-08
Identities = 72/302 (23%), Positives = 118/302 (39%), Gaps = 58/302 (19%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
++++YAE +++ AG L A G+ GD V + M + A LGA+ +
Sbjct: 26 QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYR 85
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
AA E+ L A K+++ + K +++ A + S +R
Sbjct: 86 LAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAAQADS---------RRLAQG 136
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
E+ P V D + ++YTSGTT D+PKG+
Sbjct: 137 GLEIPPQA-----------------AVAPTDLVRLMYTSGTT------------DRPKGV 167
Query: 288 LRPVGGHIATLAW-TMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG- 345
+ G L W ++ + +G TAS+ VVG Y GI +V++ G
Sbjct: 168 MHSYG----NLHWKSIDHVIALG-----LTASERLLVVGPLYHVGAFDLPGI-AVLWVGG 217
Query: 346 --KPDRTPDPSQYYRVIHNHKVNGLFTAPTAL-RVIRREDKDSTLGAQYSTDSLRYLFVA 402
+ R DP I H++ + AP L RV+ D+D ++ DSL +
Sbjct: 218 TLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD-----RFDLDSLAWCIGG 272
Query: 403 GE 404
GE
Sbjct: 273 GE 274
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 68.3 bits (167), Expect = 1e-11
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 24/194 (12%)
Query: 240 DDALAQRLSHRC-VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL 298
D L H V ++ ++ Y++YTSG+TG QPKG+ G +A
Sbjct: 638 ADLLCGYSGHNPEVALDPDNLAYVIYTSGSTG------------QPKGVAIS-HGALANY 684
Query: 299 AWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYR 358
++ + DD S + +G + + +G LA+G T + PD D +
Sbjct: 685 VCVIAERLQLAADDSMLMVSTFAFDLGVTEL-FGALASGATLHLLP--PDCARDAEAFAA 741
Query: 359 VIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKN-WAEKS 417
++ + V L P+ L+ + ++ A R L GE +
Sbjct: 742 LMADQGVTVLKIVPSHLQALL----QASRVALPR--PQRALVCGGEALQVDLLARVRALG 795
Query: 418 FNVTMLNHWWQTET 431
++NH+ TET
Sbjct: 796 PGARLINHYGPTET 809
Score = 49.8 bits (119), Expect = 6e-06
Identities = 79/365 (21%), Positives = 117/365 (32%), Gaps = 95/365 (26%)
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDM 320
Y++YTSG+TG+ PKG G + L T Y + DV +
Sbjct: 1722 YVIYTSGSTGR------------PKGAGNRHGALVNRLCATQEA-YQLSAADVVLQFTSF 1768
Query: 321 GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR 380
+ V + + PL G V+ P DP Q ++I +V L P+ L+ + +
Sbjct: 1769 AFDVSVWEL-FWPLINGARLVI--APPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQ 1825
Query: 381 EDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGHSITAHC 439
D SLR + GE + E + W E+ + + N + TET
Sbjct: 1826 MD-----EQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTET-------- 1872
Query: 440 LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATH 499
V + T C R E R +VP GQ
Sbjct: 1873 ------AVDVTHWT-------------------------CRRKDLEG-RDSVPIGQ---- 1896
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLY-----------KAP----QRF 544
I N + L P+P G LY P +RF
Sbjct: 1897 -------PIANLSTYILDASLN------PVPIGVAGELYLGGVGLARGYLNRPALTAERF 1943
Query: 545 MKIYFTKFPG-YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
+ F Y T D Y +G I R D + + G R+ +E + V
Sbjct: 1944 VADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVR 2003
Query: 604 DTAVI 608
+ VI
Sbjct: 2004 EAVVI 2008
Score = 45.5 bits (108), Expect = 1e-04
Identities = 56/295 (18%), Positives = 103/295 (34%), Gaps = 57/295 (19%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
I+ V R + AL+ ++++YAEL + + LA L AIGV V + +
Sbjct: 3101 IEAQVAR-TPEAPALVFGD------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVE 3153
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
E IV++LA ++ G + + + L +E + K+++ + +E T
Sbjct: 3154 RSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDT 3213
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL-Y 261
L L L + + L Y
Sbjct: 3214 AL--------------------------------TLDRLDLNGYSENNPSTRVMGENLAY 3241
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
++YTSG+TGKP+G G +A ++ Y + +D
Sbjct: 3242 VIYTSGSTGKPKGVGVRH-------------GALANHLCWIAEAYELDANDRVLLFMSFS 3288
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376
+ L G V+ + + DP + ++ IH H+++ P L+
Sbjct: 3289 FDGAQERF-LWTLICGGCLVV---RDNDLWDPEELWQAIHAHRISIACFPPAYLQ 3339
Score = 35.5 bits (82), Expect = 0.14
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGA 159
+++TY EL + + LA L A+GV V I + E +V +LA ++ G
Sbjct: 1598 QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGG 1649
Score = 35.1 bits (81), Expect = 0.17
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
Y T D Y +G I R D + + G R+ +E +L+ P V + V+ P
Sbjct: 892 YRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPG 948
Score = 35.1 bits (81), Expect = 0.19
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGA 159
+ ++YAEL Q + LA L A GV V I + E +V +LA ++ G
Sbjct: 536 QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGG 587
Score = 29.7 bits (67), Expect = 8.4
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVP 611
Y T D Y +G I R D + + G R+ +E +L HP V + V+
Sbjct: 3473 YRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARD 3528
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 66.1 bits (162), Expect = 3e-11
Identities = 51/210 (24%), Positives = 78/210 (37%), Gaps = 50/210 (23%)
Query: 81 NAIDRHVERGMAK---KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRV 137
++ E A+ + AL+ + + ++YAEL + + A AA GV GD V
Sbjct: 37 RSLGDVFEEAAARHPDRPALLFED------QSISYAELNARANRYAHWAAARGVGKGDVV 90
Query: 138 LIYMPLIPEAIVSMLATVRLGA----IHSVVFGGFAARELCARLEHA----KPKVIIAAS 189
+ M PE + + L +LGA +++ G A L H+ K +I
Sbjct: 91 ALLMENRPEYLAAWLGLAKLGAVVALLNTQQRG--------AVLAHSLNLVDAKHLIVGE 142
Query: 190 CGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH 249
E L EA E + D + R T ++D LA +
Sbjct: 143 ---E----------LVEAFE--EARAD--LARPPRLWVAGGDTLDDPEGYED-LAAAAAG 184
Query: 250 RCVP-------VEANDPLYILYTSGTTGKP 272
V A D + +YTSGTTG P
Sbjct: 185 APTTNPASRSGVTAKDTAFYIYTSGTTGLP 214
Score = 30.2 bits (69), Expect = 4.5
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 549 FTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
F K +++T D D G+ R D G ++T+ +E+ + P V + V
Sbjct: 434 FKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVY 493
Query: 609 GVPEP 613
GV P
Sbjct: 494 GVEVP 498
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 65.8 bits (161), Expect = 4e-11
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 496 NATHFT--------SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
+AT F+ S EV I +DG++ E G I ++ P M+ + P K+
Sbjct: 374 DATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIR---GPQVMAGYWNRPDETAKV 430
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
G++ T D G DE GY + R D+I V+G + + +E+VV SHP V + A
Sbjct: 431 MTAD--GFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAA 488
Query: 608 IGVPEPTKGEIPFCLYIKK 626
+GVP+ GE +KK
Sbjct: 489 VGVPDEHSGEAVKLFVVKK 507
Score = 40.4 bits (95), Expect = 0.003
Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 12/177 (6%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ +TY EL E LA L + G++ G RV I MP + + V++ A +R G + V
Sbjct: 47 KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPL 106
Query: 168 FAARELCARLEHAKPKVIIA----ASC--GVEPNKVVRYKTI--LNEALEISSCKPDYCI 219
+ REL +L+ + + I+ A+ V V++ + + + L ++ +
Sbjct: 107 YTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVV 166
Query: 220 IFQRRCVEEAELTPGYDILWDDALAQ--RLSHRCVPVEANDPLYILYTSGTTGKPQG 274
++ V L PG+ + ++DALA+ R + + V + +D ++ YT GTTG +G
Sbjct: 167 RRVKKMVPAWSL-PGH-VRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKG 221
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 65.6 bits (160), Expect = 4e-11
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 529 LPPGTMSTLYKAPQRFMKIYFTKFP---------GYYDTMDAGYYDENGYIYVTARDDDV 579
LPPG L+ MK Y G+ T D Y+DE+GY+Y+ R ++
Sbjct: 396 LPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEI 455
Query: 580 INVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626
I G +++ + LE V++SHP++ D AV VP+ GEIP +++
Sbjct: 456 IKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRR 502
Score = 43.7 bits (103), Expect = 3e-04
Identities = 68/280 (24%), Positives = 105/280 (37%), Gaps = 41/280 (14%)
Query: 110 VTYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++Y+ELQ V +A L +GV GD VL+ +P V LA + LG I + +
Sbjct: 67 ISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSS 126
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL-NEALEISSCKPDYCIIFQRRCVE 227
+ E+ R+ + + VE + I E + S + ++ F E
Sbjct: 127 SLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPK-FYELIKE 185
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
+ + P I DD A I+Y+SGTTG KG+
Sbjct: 186 DFDFVPKPVIKQDDVAA-----------------IMYSSGTTGA------------SKGV 216
Query: 288 LRPVGGHIATLA----WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMY 343
+ IA + + S G D+V+ A M + G S G L+ G T V+
Sbjct: 217 VLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVM 276
Query: 344 EGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
R D S +VI KV P L + ++ K
Sbjct: 277 -----RRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAK 311
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 64.8 bits (158), Expect = 1e-10
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++DT D D GY+ +T R DVI G +S+ LE++ + HP V + AVIGV P
Sbjct: 410 GFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHP 469
Query: 614 TKGEIPFCLYIKK 626
E P + K
Sbjct: 470 KWDERPLLIVQLK 482
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 63.7 bits (156), Expect = 2e-10
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 44/179 (24%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ TY +L + LA L A+GV GDRV + + PEA+ LAT+R GA+ +
Sbjct: 27 LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTA 86
Query: 168 FAARELCARLEHAKPKVI------------IAASCGVEPNKVVRYKTILNEALEISSCKP 215
+ EL + A+P ++ IAA+ G + L+ S
Sbjct: 87 YTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAG------APHVETLDADGTGS---- 136
Query: 216 DYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
L + A A VP A+D ILYTSGTTG+ +G
Sbjct: 137 ----------------------LLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKG 173
Score = 43.3 bits (103), Expect = 4e-04
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 503 VEVRII-RNDGSECEPHELGRIVVKLP--------LPPGTMSTLYKAPQRFMKIYFTKFP 553
V +R+ G+E P E+G I VK P +P T F
Sbjct: 330 VSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEE------------FRA-D 376
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D G DE GY+++ R D+I G+ + +E + P V ++AVIGVP P
Sbjct: 377 GFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHP 436
Query: 614 TKGE 617
GE
Sbjct: 437 DFGE 440
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
Length = 499
Score = 62.5 bits (152), Expect = 4e-10
Identities = 121/620 (19%), Positives = 207/620 (33%), Gaps = 151/620 (24%)
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
MP+ +A++ LA V G + V F+A+E+ RL+ + K + + V+R
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQ------DVVLRG 54
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCV------PV 254
L ++ P I+ A D+ W D L + V PV
Sbjct: 55 GRALPLYSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPV 114
Query: 255 --EANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDD 312
IL++SGTTG+P+ P L P+ A+ W ++ D
Sbjct: 115 YAPVESVTNILFSSGTTGEPKAI--------PWTHLSPL--RCASDGWAH---MDIQPGD 161
Query: 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAP 372
V +++GW++G ++ Y G T +Y G P ++ + + V L P
Sbjct: 162 VVCWPTNLGWMMG-PWLLYSAFLNGATLALYGGAP-LGRGFGKF---VQDAGVTVLGLVP 216
Query: 373 TALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNW--AEKSFNVTMLNHWWQTE 430
+ ++ R + G +S LR GE + W + + + ++ + TE
Sbjct: 217 SIVKAWRHTGAFAMEGLDWS--KLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTE 274
Query: 431 TGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKN 490
+ L P +ST
Sbjct: 275 LASGYISSTL--LQPQAPGAFST------------------------------------- 295
Query: 491 VPKGQNATHFTSVEVRIIRNDGSECEPHE---LGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
A+ T ++ ND P + +G + + P+ G L A K+
Sbjct: 296 ------ASLGTRF---VLLNDNGVPYPDDQPCVGEVALAPPM-LGASDRLLNADHD--KV 343
Query: 548 YFTKFPGYYDT-------------MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALED 594
Y+ P Y GY+ G R DD +N+ G + S+ +E
Sbjct: 344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQG------RADDTMNLGGIKTSSVEIER 397
Query: 595 VVLSHPD-VGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTN 653
+ +TA +GV P G P L I + +K GF
Sbjct: 398 ACDRAVAGIAETAAVGVAPPDGG--PELLVIFLVLGEEKKGFD----------------- 438
Query: 654 PIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLS--TSVTGLPRTRSGK 711
E + K+ +E ++ + P+ FK+S V LPR S K
Sbjct: 439 -----------------QARPEALQKKFQEAIQTNLNPL--FKVSRVKIVPELPRNASNK 479
Query: 712 TARKSIVDMARNK-PLRVRL 730
R+ + D + + R +L
Sbjct: 480 LLRRVLRDQLKKELSGRSKL 499
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 61.6 bits (150), Expect = 9e-10
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G Y + D Y D +GY Y R D + V G L T+ +E ++L +PD + AV VP+P
Sbjct: 381 GVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDP 440
Query: 614 TKGE 617
G+
Sbjct: 441 VVGD 444
Score = 29.3 bits (66), Expect = 9.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 239 WDDALAQRLSHRCVPVE-----ANDPLYILYTSGTTGKPQGC 275
W D LA +HR +D +++TSGT+G P+
Sbjct: 132 WADELA---AHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAV 170
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 61.1 bits (149), Expect = 1e-09
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R TYA+++ +A L +G+ GD V++ +P PE +++ L R GA+ +
Sbjct: 49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPF 108
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ E+ + + + K+II SC V+ K+ ++ + + + C+
Sbjct: 109 YTPAEIAKQAKASGAKLIITQSCYVD--KLKGLAE--DDGVTVVTIDDP-----PEGCLH 159
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
+ELT ++ L + V + +D + + Y+SGTTG P+G
Sbjct: 160 FSELTQAD----ENELPE------VEISPDDVVALPYSSGTTGLPKG 196
Score = 46.5 bits (111), Expect = 4e-05
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+ T D GY D++ +++ R ++I G +++ + LE +++SHP + D AV+ + +
Sbjct: 412 GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDE 471
Query: 614 TKGEIP 619
GE+P
Sbjct: 472 VAGEVP 477
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 61.9 bits (150), Expect = 1e-09
Identities = 73/342 (21%), Positives = 131/342 (38%), Gaps = 57/342 (16%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
YAEL + + LA +L GV V + M E +V++LA ++ G + + + A
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPA 597
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
L LE + +++++ S + K L + Q ++
Sbjct: 598 ERLAYMLEDSGVQLLLSQS-------HLGRKLPLAAGV-------------QVLDLDRPA 637
Query: 231 L-TPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILR 289
GY ++ L+ + Y++YTSG+TGK PKG
Sbjct: 638 AWLEGY---SEENPGTELN-------PENLAYVIYTSGSTGK------------PKGAGN 675
Query: 290 PVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDR 349
L W M Y +G D + + V + + PL +G V+ P
Sbjct: 676 RHRALSNRLCW-MQQAYGLGVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVV--AAPGD 731
Query: 350 TPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHC--D 407
DP++ +I+ V+ L P+ L+ +++ + S SLR + +GE D
Sbjct: 732 HRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA------SCTSLRRIVCSGEALPAD 785
Query: 408 HETKNWAEKSFNVTMLNHWWQTETGHSIT-AHCLGYQHDTVP 448
+ + +A+ + N + TE +T C+ D+VP
Sbjct: 786 AQEQVFAKLP-QAGLYNLYGPTEAAIDVTHWTCVEEGGDSVP 826
Score = 54.2 bits (130), Expect = 2e-07
Identities = 82/370 (22%), Positives = 127/370 (34%), Gaps = 76/370 (20%)
Query: 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQD 311
V + ++ Y++YTSG+TG+ PKG+ G + L T Y + D
Sbjct: 4689 VRLHPDNLAYVIYTSGSTGR------------PKGVAVSHGSLVNHLHATGER-YELTPD 4735
Query: 312 DVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371
D + H + Y PL G + V+ + D DP + Y IH H+V L
Sbjct: 4736 DRVLQFMSFSFDGSHEGL-YHPLINGASVVI---RDDSLWDPERLYAEIHEHRVTVLVFP 4791
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTE 430
P L+ + + SLR GE + + A ++ V + N + TE
Sbjct: 4792 PVYLQQLAEHAE-----RDGEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTE 4846
Query: 431 TGHSITA-HCLGYQH---DTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486
T ++ +P G P G YV LDG+
Sbjct: 4847 TTVTVLLWKARDGDACGAAYMP----IGTPLGNRSG-YV-------LDGQL--------- 4885
Query: 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546
+P G E+ + G E + R ++ P +RF+
Sbjct: 4886 --NPLPVGVAG------ELYL----GGEG----VARGYLERPA---------LTAERFVP 4920
Query: 547 IYFTKFPG--YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGD 604
F PG Y T D Y +G I R D + + G R+ +E + HP V +
Sbjct: 4921 DPFGA-PGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVRE 4979
Query: 605 TAVIGVPEPT 614
VI
Sbjct: 4980 AVVIAQEGAV 4989
Score = 53.8 bits (129), Expect = 4e-07
Identities = 95/527 (18%), Positives = 174/527 (33%), Gaps = 104/527 (19%)
Query: 85 RHVERGMAKKVALIHDSPVTK-SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL 143
R V R ++V D+ ++++YAEL + + LA L GV V + +
Sbjct: 3057 RGVHRLFEEQVERTPDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVER 3116
Query: 144 IPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI 203
E +V +LA ++ G + + + L LE + +++++ S P
Sbjct: 3117 SLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLRLP--------- 3167
Query: 204 LNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYIL 263
+ V+ +L G + + A R + Y++
Sbjct: 3168 ------------------LAQGVQVLDLDRGDENYAEANPAIR-------TMPENLAYVI 3202
Query: 264 YTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323
YTSG+TGKP+G ++ M Y +G D + +
Sbjct: 3203 YTSGSTGKPKGVGIRH-------------SALSNHLCWMQQAYGLGVGDRVLQFTTFSFD 3249
Query: 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
V + + PL +G V+ P+ DP+ +I++ V+ L P+ L+ E+
Sbjct: 3250 VFVEEL-FWPLMSGARVVL--AGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEED 3306
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ 443
SL+ + GE + + + + + N + TE ++T +
Sbjct: 3307 AHRCT------SLKRIVCGGEALPADLQ--QQVFAGLPLYNLYGPTEATITVTHWQCVEE 3358
Query: 444 HDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSV 503
P G P ++ + + VP G +
Sbjct: 3359 GKDAVP---IGRPIANRACYILDGSL-------------------EPVPVGALGELYLGG 3396
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
E L G + +RF+ F Y T D
Sbjct: 3397 EG-----------------------LARGYHNRPGLTAERFVPDPFVPGERLYRTGDLAR 3433
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
Y +G I R D + + G R+ +E +L HP V + V+ V
Sbjct: 3434 YRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAV 3480
Score = 53.4 bits (128), Expect = 5e-07
Identities = 101/521 (19%), Positives = 157/521 (30%), Gaps = 132/521 (25%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ ++YAEL + + LA L A GV RV I E +V++LA ++ G + +
Sbjct: 2027 QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPN 2086
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ A L LE + +++ + L E L + + V
Sbjct: 2087 YPAERLAYMLEDSGAALLLT-------------QRHLLERLPLPA------------GVA 2121
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPL-YILYTSGTTGKPQGCSELRSEDQPKG 286
L D A A + L Y++YTSG+TG PKG
Sbjct: 2122 RLPLDR------DAEWADYPDTAPAVQLAGENLAYVIYTSGSTG------------LPKG 2163
Query: 287 ILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGK 346
+ G +A Y + D + H + PL G ++ +
Sbjct: 2164 VAVSHGALVAHCQAAGER-YELSPADCELQFMSFSFDGAHEQ-WFHPLLNGARVLI---R 2218
Query: 347 PDRTPDPSQYYRVIHNHKVNGLFTAPTALR-VIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
D DP Q Y + H V L P L+ + ++D ++R GE
Sbjct: 2219 DDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG------RPPAVRVYCFGGEA 2272
Query: 406 CDHET-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKY 464
+ + E V + N + TE V P P Y
Sbjct: 2273 VPAASLRLAWEALRPVYLFNGYGPTEA--------------VVTPLLWKCRPQDPCGAAY 2318
Query: 465 VNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIV 524
V I L R IL L
Sbjct: 2319 VPIGRA--LGNRRAY--ILDADLN------------------------------------ 2338
Query: 525 VKLPLPPGTMSTLYKAPQRFMKIYFTKFPG-----------------YYDTMDAGYYDEN 567
L PG LY + + Y + PG Y T D Y +
Sbjct: 2339 ---LLAPGMAGELYLGGEGLARGYLNR-PGLTAERFVPDPFSASGERLYRTGDLARYRAD 2394
Query: 568 GYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
G + R D + + G R+ +E + +HP V + V+
Sbjct: 2395 GVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVV 2435
Score = 42.3 bits (99), Expect = 0.001
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 89 RGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAI 148
R VA++ D K+TYAEL + + LA +L A GV V I M E +
Sbjct: 4562 RMTPDAVAVVFDE------EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMM 4615
Query: 149 VSMLATVRLGAIH 161
V +LA ++ G +
Sbjct: 4616 VGLLAVLKAGGAY 4628
Score = 30.3 bits (68), Expect = 5.4
Identities = 36/138 (26%), Positives = 50/138 (36%), Gaps = 29/138 (21%)
Query: 496 NATHFTSVEV--------RIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ----- 542
+ TH+T VE R I N L P+P G + LY A +
Sbjct: 811 DVTHWTCVEEGGDSVPIGRPIANLACYILDANLE------PVPVGVLGELYLAGRGLARG 864
Query: 543 ----------RFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSAL 592
RF+ F Y T D Y +G I R D + + G R+ +
Sbjct: 865 YHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEI 924
Query: 593 EDVVLSHPDVGDTAVIGV 610
E +L HP V + AV+ V
Sbjct: 925 EARLLEHPWVREAAVLAV 942
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 60.4 bits (146), Expect = 2e-09
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G T D GY D G +++ R+DD+I G + A+E+ + +HP V D AVIGVP+
Sbjct: 396 GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDE 455
Query: 614 TKGE 617
G
Sbjct: 456 RFGH 459
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 60.0 bits (146), Expect = 2e-09
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
EV + DG+ E+GR++ + P T YK+PQ + G+Y + D
Sbjct: 364 EVWVADADGNPLPQGEVGRLMTRGPY---TFRGYYKSPQHNASAFDAN--GFYCSGDLVS 418
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623
D +GYI V R+ D IN G +++ +E+++L HP V A++ + + GE C +
Sbjct: 419 IDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGE-KSCAF 477
Query: 624 IKKRIPL 630
+ + PL
Sbjct: 478 LVVKEPL 484
Score = 51.1 bits (123), Expect = 2e-06
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 64 DQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLA 123
D P T + + RH + +A+I R+ +Y EL + LA
Sbjct: 24 DLPLT------------DILTRHAA---SDAIAVICGE------RQFSYRELNQASDNLA 62
Query: 124 GSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAAR--ELCARLEHAK 181
SL G+ GD L+ + + E ++ A ++LG V F+ + EL A +
Sbjct: 63 CSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVA--PVNALFSHQRSELNAYASQIE 120
Query: 182 PKVIIA 187
P ++IA
Sbjct: 121 PALLIA 126
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 59.8 bits (145), Expect = 3e-09
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y + D DE GYI +T R D+I G +S+ +ED++L HP + D V+ +P+
Sbjct: 410 GWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDE 469
Query: 614 TKGEIPFCLYI 624
GE C Y+
Sbjct: 470 RLGE-RSCAYV 479
Score = 56.7 bits (137), Expect = 3e-08
Identities = 58/284 (20%), Positives = 103/284 (36%), Gaps = 56/284 (19%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY+ L S LA L A G+ GDRV +P E + LA +++GA+ + +
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
EL L + K+ A + +K I + + ++ V +
Sbjct: 111 AELVWVLNKCQAKMFFAPT---------LFKQT-RPVDLILPLQNQ--LPQLQQIVGVDK 158
Query: 231 LTPGYDILWDDALAQRLS-----HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPK 285
L P +L+Q ++ + ++ +L+TSGT G P+G + + +
Sbjct: 159 LAPATS---SLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGV--MLTHNN-- 211
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
IL + A L N+ DV+ + +G G + P G SV+ +
Sbjct: 212 -ILASERAYCARL--------NLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD- 261
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGA 389
+FT L ++ ++ LGA
Sbjct: 262 ----------------------IFTPDACLALLEQQRCTCMLGA 283
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 60.0 bits (145), Expect = 3e-09
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 483 LPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHE---LGRIVVKLPLPPGTMSTLYK 539
LPE+ + + Q + +V + + E P + +G IV+K S++ K
Sbjct: 352 LPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIK-------GSSIMK 404
Query: 540 APQRFMKIYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLS 598
+ K F G+ +T D G +G++ + R D+I G +S+ +E+V+
Sbjct: 405 GYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYK 464
Query: 599 HPDVGDTAVIGVPEPTKGEIPFCLYI 624
+P V +TAV+ +P PT GE P C ++
Sbjct: 465 YPKVLETAVVAMPHPTWGETP-CAFV 489
Score = 43.9 bits (103), Expect = 3e-04
Identities = 68/292 (23%), Positives = 119/292 (40%), Gaps = 54/292 (18%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL-GAIHSVVFGG 167
+ T+ + ++ LA SL ++ ++ D V + P P A+ M V + GA+ + +
Sbjct: 39 RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTP-AMYEMHFAVPMAGAVLNPINTR 97
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISS---CKPDYCIIFQRR 224
A + A L HAKPK++ ++ + E L + S + +IF
Sbjct: 98 LDATSIAAILRHAKPKILFVDR---------SFEPLAREVLHLLSSEDSNLNLPVIF--- 145
Query: 225 CVEEAELT--PGYDILWDDALAQR------LSHRCVPVE-ANDPLYILYTSGTTGKPQGC 275
+ E + P + L + L QR L R ++ +DP+ + YTSGTT P+G
Sbjct: 146 -IHEIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGV 204
Query: 276 SELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW-WTASDM---GWVVGHSYICY 331
++ G +++TL+ + + MG V+ WT GW +
Sbjct: 205 -----------VISHRGAYLSTLSAIIG--WEMGTCPVYLWTLPMFHCNGWT-----FTW 246
Query: 332 GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
G A G TSV R + Y+ I H V + PT ++ + +
Sbjct: 247 GTAARGGTSVCM-----RHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 59.8 bits (145), Expect = 3e-09
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
S ++I +DG+E E+G + VK P M ++ P+ +I + G+ T D
Sbjct: 386 STLCKVIDDDGNELPLGEVGELCVK---GPQVMKGYWQRPEATDEILDSD--GWLKTGDI 440
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
E+GY+ + R D+I V+G + + LEDV+ + P V A IGVP+ GE
Sbjct: 441 ALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGE 496
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 59.4 bits (144), Expect = 3e-09
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 34/167 (20%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++TY +L+EQ LA + + +++Y + P +V+ L +++ G + V
Sbjct: 25 ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSI 84
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
+ + +E A P+++I + V + I ALE
Sbjct: 85 PSERIEMIIEAAGPELVIHTA--ELSIDAVGTQIITLSALE------------------- 123
Query: 229 AELTPGYDILWDDALAQRLSH-RCVPVEANDPLYILYTSGTTGKPQG 274
A V+ +D YI+YTSG+TG P+G
Sbjct: 124 ------------QAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKG 158
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 59.1 bits (144), Expect = 4e-09
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 92 AKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSM 151
+AL D R ++YAEL E+ + LA L A+GV GDRV + + + + ++
Sbjct: 1 PDAIALRDDD------RTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAAL 54
Query: 152 LATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIA 187
LA ++ GA + + + A L LE A+P +++
Sbjct: 55 LAILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLT 90
Score = 40.6 bits (96), Expect = 0.003
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
Query: 244 AQRLSH-------RCVPVEANDPLYILYTSGTTGKPQG 274
A+RL + + + +D Y++YTSG+TGKP+G
Sbjct: 73 AERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKG 110
Score = 33.7 bits (78), Expect = 0.40
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
Y T D + +G + R DD + + G R+ +E + +HP V D V+ E
Sbjct: 322 YRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVVVREEG 379
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 59.0 bits (143), Expect = 5e-09
Identities = 83/368 (22%), Positives = 138/368 (37%), Gaps = 67/368 (18%)
Query: 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS--VIYNMGQDDVW 314
+D + I +TSGTTG+P+G + H A + +++ I G+DDV+
Sbjct: 172 DDAVLICFTSGTTGRPKGVTI---------------SHSALIVQSLAKIAIVGYGEDDVY 216
Query: 315 WTASDMGWVVGHSYICY-GPLAAGITSVMYEGKPDRTP--DPSQYYRVIHNHKVNGLFTA 371
+ + C+ G L++ + +M P D + I H V + T
Sbjct: 217 LHTAPL---------CHIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITV 267
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTE 430
P + + + S S+R + G A+K F N + + + TE
Sbjct: 268 PAMMADLISLTRKSMTWK--VFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTE 325
Query: 431 TGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKN 490
S+T L HD P S + + V + CV
Sbjct: 326 ACSSLTFMTL---HD--PTLESPKQTLQTVNQTKSSSVHQ----PQGVCV---------- 366
Query: 491 VPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT 550
G+ A H VE++I ++ S +GRI+ + P M L Q
Sbjct: 367 ---GKPAPH---VELKIGLDESSR-----VGRILTR---GPHVM--LGYWGQNSETASVL 410
Query: 551 KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
G+ DT D G+ D+ G +++ R +D I G + +E V+ HP V V+GV
Sbjct: 411 SNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGV 470
Query: 611 PEPTKGEI 618
P+ E+
Sbjct: 471 PDSRLTEM 478
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 58.7 bits (142), Expect = 7e-09
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 506 RIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYD 565
++I +DG+E E G + +K P M ++ P+ + + G++ T D D
Sbjct: 398 KVIDDDGNELPLGERGELCIK---GPQVMKGYWQQPEATAEALDAE--GWFKTGDIAVID 452
Query: 566 ENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
+G++ + R D+I V+G + + +EDVV++HP V + A IGVP+ GE
Sbjct: 453 PDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGE 504
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 58.7 bits (143), Expect = 7e-09
Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 31/171 (18%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI----HSV 163
+TYAEL + +A L A+G + GDRVL+ P + + + + GAI
Sbjct: 22 ETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPP 80
Query: 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQR 223
G L A L A + ++ S +R AL +
Sbjct: 81 RRLGRHLARLAAILADAGARAVLTTS---AVLAALRAALAAPAALLL-----------LL 126
Query: 224 RCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
++ D W R P + +D ++ YTSG+TG P+G
Sbjct: 127 IAADDLAALAAAD--W----------RPPPPDPDDIAFLQYTSGSTGAPKG 165
Score = 42.2 bits (100), Expect = 0.001
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 503 VEVRIIRNDGS-ECEPHELGRIVVKLPLPPGTMSTLYKAP----QRFMKIYFTKFPGYYD 557
EVRI+ + E+G I V+ P + + P + F T G+
Sbjct: 364 HEVRIVDPETRRPLPDGEVGEIWVR---GPSVAAGYWNRPEATAETFGARLATDEGGWLR 420
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVV-LSHPDVGDTAVIGVPEPTKG 616
T D G+ + G +YVT R D+I + G +E V +HP + A G
Sbjct: 421 TGDLGFLHD-GELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG 479
Query: 617 E 617
E
Sbjct: 480 E 480
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 58.0 bits (141), Expect = 9e-09
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG--G 167
+T+ EL ++VS LA LAA+GV GDRV + E ++ LA +RLGA+ V+
Sbjct: 2 LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAV--VLPLNPR 59
Query: 168 FAARELCARLEHAKPKV 184
EL +L +P +
Sbjct: 60 LPQEELQQQLADLQPDL 76
Score = 56.4 bits (137), Expect = 3e-08
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLP------LPPGTMSTLYKAPQRFMKIYFTKFPGYY 556
E+RI P + G I+V+ P LP G ++ G++
Sbjct: 251 RELRI-------VNPQD-GEILVRGPSLFLGYLPQGGLTPPLDED------------GWF 290
Query: 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616
T D GY D GY+YV R DD+I G + +E V+L HP V + AV+GVP+ G
Sbjct: 291 HTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWG 350
Query: 617 EIPFCLYIKKRIPLDK 632
+ P + P+
Sbjct: 351 QRPVAFVVPNDDPVSV 366
Score = 33.7 bits (78), Expect = 0.34
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 25/82 (30%)
Query: 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT 297
L + L Q+L+ + + + P I++TSG+TGK PK ++ G H+A
Sbjct: 60 LPQEELQQQLAD--LQPDLDRPATIIFTSGSTGK------------PKAVVHTWGNHLA- 104
Query: 298 LAWTMSVI---YNMG--QDDVW 314
S N+G DD W
Sbjct: 105 -----SARGSAENLGLTPDDNW 121
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 58.1 bits (140), Expect = 1e-08
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+ T D GY D++G I++ R ++I G +++ + LE ++L+HP V D AV+ +P+
Sbjct: 417 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDE 476
Query: 614 TKGEIP-FCLYIKKR 627
GEIP C+ I +
Sbjct: 477 EAGEIPAACVVINPK 491
Score = 30.3 bits (68), Expect = 4.6
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ VTY E+ A +L ++G+ G V++ +P + E + L + G + S
Sbjct: 54 KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPT 113
Query: 168 FAARELCARLEHAKPKVII 186
E+ + E A K+I+
Sbjct: 114 ALESEIKKQAEAAGAKLIV 132
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 57.6 bits (140), Expect = 1e-08
Identities = 69/325 (21%), Positives = 116/325 (35%), Gaps = 81/325 (24%)
Query: 83 IDRHVERGMAKK----VALIH----DSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAG 134
I RH+ R A++ +A+ + + ++++AEL + +A L A G+ G
Sbjct: 8 IARHLPR-AAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRG 66
Query: 135 DRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEP 194
R ++ + E A + GA+ +V G + L L A+P I G+
Sbjct: 67 MRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFI----GIPK 122
Query: 195 NKVVRYKTILNEALEISSCKPDYCIIF--------QRRCVEEAELTPGYDILWDDALAQR 246
+ R +F + V L G + L +
Sbjct: 123 AHLAR-------------------RLFGWGKPSVRRLVTVGGRLLWGGTTL---ATLLRD 160
Query: 247 LSH---RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS 303
+ + +D IL+TSG+TG PKG++ H A
Sbjct: 161 GAAAPFPMADLAPDDMAAILFTSGSTGT------------PKGVVYT---HGMFEA---- 201
Query: 304 VIYNMGQDDVWWTASDMGWVVGHSYICYGPL------AAGITSVMYEGKPDR--TPDPSQ 355
I + + D G G + PL A G+TSV+ + P R T DP++
Sbjct: 202 QIEALRE--------DYGIEPGEIDLPTFPLFALFGPALGMTSVIPDMDPTRPATVDPAK 253
Query: 356 YYRVIHNHKVNGLFTAPTALRVIRR 380
+ I + V LF +P L + R
Sbjct: 254 LFAAIERYGVTNLFGSPALLERLGR 278
Score = 43.0 bits (102), Expect = 5e-04
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 500 FTSVEVRIIR---------NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ--RFMKIY 548
VEVRII +D E+G IVV P+ + Y P+ R KI
Sbjct: 358 VDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPM---VTRSYYNRPEATRLAKI- 413
Query: 549 FTKFPGYYDTM-DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
+ M D GY D G ++ R + AG L T E + +HP V +A+
Sbjct: 414 PDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSAL 473
Query: 608 IGVPEP 613
+GV P
Sbjct: 474 VGVGVP 479
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 57.5 bits (139), Expect = 2e-08
Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLP-LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMD 560
+V+ R++ + G++C G ++++ P L PG ++ PQ + FT G++ T D
Sbjct: 314 TVQTRVVDDQGNDCPAGVPGELLLRGPNLSPG----YWRRPQATARA-FTG-DGWFRTGD 367
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPF 620
D +G+ +V R D+ G + + +E V+ HP + + AV+G+ + GE+ +
Sbjct: 368 IARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGY 427
Query: 621 C 621
Sbjct: 428 L 428
Score = 48.6 bits (116), Expect = 9e-06
Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 37/168 (22%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R+ TYAEL V LA L G G+R+ + + A R+GAI+ +
Sbjct: 21 RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWR 80
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKP-DYCIIFQRRCV 226
+A EL A L+ A+P++++ ++A+ D
Sbjct: 81 LSASELDALLQDAEPRLLLG-----------------DDAVAAGRTDVEDLAAFIASADA 123
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
E TP + IL+TSGT+G+P+G
Sbjct: 124 LEPADTP-------------------SIPPERVSLILFTSGTSGQPKG 152
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 56.2 bits (136), Expect = 3e-08
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
T D GY E G ++ R DDVINV+G + +EDV+L P V + V +P GE
Sbjct: 295 TKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGE 354
Query: 618 I 618
Sbjct: 355 R 355
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 56.4 bits (137), Expect = 4e-08
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 46/173 (26%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG------AIHS 162
K+TY +L+E LA + ++ + ++++ + PE + + L V+ G + S
Sbjct: 27 KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSS 86
Query: 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI-LNEALEISSCKPDYCIIF 221
A + +E AKP +IIA P +++ I L+E +I + Y
Sbjct: 87 ------PAERIEMIIEVAKPSLIIATE--ELPLEILGIPVITLDELKDIFATGNPY---- 134
Query: 222 QRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
H V+ +D YI++TSGTTGKP+G
Sbjct: 135 ------------------------DFDH---AVKGDDNYYIIFTSGTTGKPKG 160
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 56.3 bits (135), Expect = 4e-08
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query: 485 ESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGT-MSTLYKAPQR 543
E L G + ++ P + G+ + ++ L Y +
Sbjct: 326 EKLTLKAKTGLP--IPL--VRLRVADEEGRPVPKD-GKALGEVQLKGPWITGGYYGNEEA 380
Query: 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
G++ T D +DE GY+ + R D+I G +S+ LE+ ++ HP V
Sbjct: 381 TRSALTPD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVK 438
Query: 604 DTAVIGVPEPTKGEIPFCLYIK 625
+ AV+ +P P E +
Sbjct: 439 EAAVVAIPHPKWQE-RPLAVVV 459
Score = 37.0 bits (85), Expect = 0.039
Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 21/166 (12%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
+ TYAE+ ++ L G L A+GV GDRV + + A +GA+
Sbjct: 24 RTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRL 83
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
+ +E+ L HA+ KV++ ++
Sbjct: 84 SPKEIAYILNHAEDKVLLFDP---------NLLPLVEAIRGELK-----------TVQHF 123
Query: 229 AELTPGYDILWDDALAQRLSHRCV-PVEANDPLYILYTSGTTGKPQ 273
+ + V + YT+GTTG P+
Sbjct: 124 VVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPK 169
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 56.2 bits (136), Expect = 4e-08
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G Y + D Y D +G+IY R D + V G LS + +E ++L HP + AV VP+
Sbjct: 380 GMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDE 439
Query: 614 TKGE 617
G+
Sbjct: 440 RVGD 443
Score = 34.6 bits (80), Expect = 0.17
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 240 DDALAQRLSHRCV-----PVEANDPLYILYTSGTTGKPQG--CSELR 279
A A+ ++ V+A DP +++TSGTTG P+ CS R
Sbjct: 128 TPAYAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGR 174
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 56.5 bits (137), Expect = 4e-08
Identities = 87/389 (22%), Positives = 143/389 (36%), Gaps = 106/389 (27%)
Query: 253 PVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMG 309
+ +D I+++SG+ G +PKG++ + +I + S ++N+
Sbjct: 778 TFKPDDTATIIFSSGSEG------------EPKGVMLSHHNILSNIEQI----SDVFNLR 821
Query: 310 QDDVWWTASDMGWVVG-----HSY----ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVI 360
DDV ++ HS+ + PL GI V + PD T D +++
Sbjct: 822 NDDV---------ILSSLPFFHSFGLTVTLWLPLLEGIKVVYH---PDPT-DALGIAKLV 868
Query: 361 HNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNV 420
H+ L PT LR+ R K L ++ SLR + E E + E+ F +
Sbjct: 869 AKHRATILLGTPTFLRLYLRNKKLHPL--MFA--SLRLVVAGAEKLKPEVADAFEEKFGI 924
Query: 421 TMLNHWWQTETGHSITAHC-------LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473
+L + TET + + Q + S G+P PG
Sbjct: 925 RILEGYGATETSPVASVNLPDVLAADFKRQTGSKEG--SVGMPLPGV------------- 969
Query: 474 DGRAHCVRIL-PESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPG 532
VRI+ PE+ E P E G I++ P
Sbjct: 970 -----AVRIVDPET-------------------------FEELPPGEDGLILIG---GPQ 996
Query: 533 TMSTLYKAPQRFMK-IYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSA 591
M P++ + I G+Y T D G+ DE+G++ +T R + G + A
Sbjct: 997 VMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGA 1056
Query: 592 LED---VVLSHPDVGDTAVIGVPEPTKGE 617
+E+ L +V AV VP+ KGE
Sbjct: 1057 VEEELAKALGGEEV-VFAVTAVPDEKKGE 1084
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 55.7 bits (134), Expect = 6e-08
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
S + I + G+ E+G + +K P M +K P+ K+ G+ T D
Sbjct: 390 STDACIKDDAGTVLAIGEIGELCIK---GPQVMKGYWKRPEETAKVMDAD--GWLHTGDI 444
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
DE G++Y+ R D+I V+G + + +EDV+ P V + A +GVP+ GEI
Sbjct: 445 ARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKV 504
Query: 622 LYIKK 626
+ +KK
Sbjct: 505 VIVKK 509
Score = 36.0 bits (83), Expect = 0.078
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 15/203 (7%)
Query: 85 RHVERGMAKKVALIHDSPVTKSIRK-VTYAELQEQVSLLAGSL-AAIGVSAGDRVLIYMP 142
R V A VA D P S K +TY E + V A L + + GDRV + MP
Sbjct: 25 RTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMP 84
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAA-SCGVEPNKVV--- 198
+ ++ +R G V + REL +L + V++ + G +V+
Sbjct: 85 NCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT 144
Query: 199 RYKTILNEALEISSCKPDYCII-FQRRCVEEAELTPGYD----ILWDDALAQRLSHRCVP 253
K ++ L P ++ F + V++ L P Y I + +ALA H
Sbjct: 145 PVKQVITTGLGDMLGFPKAALVNFVVKYVKK--LVPEYRINGAIRFREALALGRKHSMPT 202
Query: 254 --VEANDPLYILYTSGTTGKPQG 274
+E +D ++ YT GTTG +G
Sbjct: 203 LQIEPDDIAFLQYTGGTTGVAKG 225
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 55.2 bits (134), Expect = 8e-08
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ +T+AEL E+V LA L A+GV GDRV I PE +++ LA + GA+ V
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAV-PVPIYP 62
Query: 168 FAARELCAR-LEHAKPKVIIA 187
++ E A L + +V+
Sbjct: 63 TSSPEEVAYILNDSGARVVFV 83
Score = 45.2 bits (108), Expect = 9e-05
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVI-NVAGHRLSTSALEDVVLSHPDVGDTAVIG 609
G+ T D G DE+G++ +T R D+I G ++ +E+ + + P + V+G
Sbjct: 311 GWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG 367
Score = 35.6 bits (83), Expect = 0.11
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 257 NDPLYILYTSGTTGKPQGC 275
+D ++YTSGTTG P+G
Sbjct: 88 DDLATLIYTSGTTGNPKGV 106
Score = 32.5 bits (75), Expect = 0.87
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 119 VSLLAGSLAAIGVSAGDRVLIYMPL--IPEAIVSMLATVRLGAIHSVVFGGFAARELCAR 176
++ A L I +S GDRVL ++PL + E + + GA V F + L
Sbjct: 114 LAQAAALLEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGAR--VNFAE-SPETLLED 170
Query: 177 LEHAKPKVIIA 187
L +P V A
Sbjct: 171 LREVRPTVFFA 181
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 55.1 bits (133), Expect = 8e-08
Identities = 43/168 (25%), Positives = 61/168 (36%), Gaps = 22/168 (13%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TYAE + A +LAA GV GDRV + E + L LGAI V A
Sbjct: 48 TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI--AVPINTAL 105
Query: 171 RELCARLEH----AKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
R +LEH + ++++ + + L A P ++
Sbjct: 106 RG--PQLEHILRNSGARLLVVEAALLA---------ALEAADPGDLPLPAVWLL---DAP 151
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
+ G+ L V+ D ILYTSGTTG +G
Sbjct: 152 ASVSVPAGWSTAPLPPLDAPAP--AAAVQPGDTAAILYTSGTTGPSKG 197
Score = 50.5 bits (121), Expect = 2e-06
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLY-----KAPQRFMKIYFTKFPGYYDT 558
E R++ E E G ++++ P +T Y K + + ++F T
Sbjct: 353 EARVVDEHDQELPDGEPGELLLRAD-EPFAFATGYFGMPEKTVEAWRNLWF-------HT 404
Query: 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVP 611
D D +G+ R D I G +S+ +E V+LSHP V AV VP
Sbjct: 405 GDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVP 457
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 55.0 bits (132), Expect = 9e-08
Identities = 131/653 (20%), Positives = 211/653 (32%), Gaps = 164/653 (25%)
Query: 99 HDSPVTKSIRK------VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSML 152
P ++R+ + Y EL +V LA L A VS G RVL+ PE +S+L
Sbjct: 25 RQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL 84
Query: 153 ATVRLGAIHSVVFGGFAARELCARLEHAKP-KVIIAASCGVEPNKVVRYKTILNEALEIS 211
A +LGAI + G + + P ++A + S
Sbjct: 85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS----------------S 128
Query: 212 SCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGK 271
+ I A L +LA + DPL +++TSGTTG+
Sbjct: 129 AVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQ-----GSEDPLAMIFTSGTTGE 183
Query: 272 PQGC-SELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYIC 330
P+ R+ IL+ G L W + WVVG +
Sbjct: 184 PKAVLLANRTFFAVPDILQKEG-----LNW-------------------VTWVVGET--T 217
Query: 331 YGPLAAG--------ITSVMYEGK-PDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
Y PL A +T +M+ G + + ++ + V PT L + E
Sbjct: 218 YSPLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSE 277
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
K A + SLR + G + E + V + +ETG TA CL
Sbjct: 278 LK----SANATVPSLRLVGYGGSRAIAADVRFIEAT-GVRTAQVYGLSETG--CTALCLP 330
Query: 442 YQHDTVP--PKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATH 499
++ + G P+PG D V L DG P +
Sbjct: 331 TDDGSIVKIEAGAVGRPYPGVD------VYLAATDGIG-----------PTAPGAGPSAS 373
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559
F ++ ++ P M + P+R ++ G+ +T
Sbjct: 374 FGTLWIK-----------------------SPANMLGYWNNPERTAEVLID---GWVNTG 407
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
D E+G+ Y+ R ++I G ++ ++ + V + A +P+
Sbjct: 408 DLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEE----- 462
Query: 620 FCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGK 679
F L+G ++ + DE +
Sbjct: 463 ---------------FGALVG------------------------LAVVASAELDESAAR 483
Query: 680 ELKELV----REAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
LK + R P+A VT +PRT+SGK R S+ A RV
Sbjct: 484 ALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATADKARV 536
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 54.7 bits (132), Expect = 1e-07
Identities = 83/381 (21%), Positives = 130/381 (34%), Gaps = 98/381 (25%)
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDD 312
A+DP IL+TSG+TG PKG++ R I L +
Sbjct: 84 ADDPAAILFTSGSTGP------------PKGVVYTHRTFAAQIDALRSLYGI-------- 123
Query: 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDR--TPDPSQYYRVIHNHKVNGLFT 370
D + +GP A G+T+V+ P DP++ + I + +F
Sbjct: 124 ---REGDRDLAAFPPFALFGP-ALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFG 179
Query: 371 APTALRVIRR--EDKDSTL---------GAQYSTDSLR-YLFVAGEHCDHETKNWAEKSF 418
+P L+ + R E+ L GA D LR ++ + T A ++
Sbjct: 180 SPALLKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEAL 239
Query: 419 NVT-MLNHWWQTETGHSITAH---CLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474
V + E+ A C+G+ P PG D
Sbjct: 240 PVASIEGREVLAESAEPPEAGAGVCVGH-------------PVPGID------------- 273
Query: 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTM 534
VRI+P + E P E+G I+V P
Sbjct: 274 -----VRIIPIDDGPIASWDDDI----------------ELPPGEVGEIIVS---GPHVT 309
Query: 535 STLYKAPQ--RFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSAL 592
Y P+ + KI ++ D GY+D+ G ++ R + AG L T +
Sbjct: 310 REYYNRPEATKLAKIS-DGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPV 368
Query: 593 EDVVLSHPDVGDTAVIGVPEP 613
E V HP V +A++GV +P
Sbjct: 369 EQVFNRHPGVRRSALVGVGKP 389
Score = 53.9 bits (130), Expect = 2e-07
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+T+ EL E+ +A L A G+ GDRV++ +P + A ++GA+ ++ G
Sbjct: 1 DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 168 FAARELCARLEHAKPKVII 186
+ L LE A+P I
Sbjct: 61 MGRKHLGRCLEEAEPDAFI 79
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 54.6 bits (131), Expect = 1e-07
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 529 LPPGTMSTLY-----------KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDD 577
LP G + T+Y P++ P + D G DE+GY+Y+ R
Sbjct: 343 LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKS 402
Query: 578 DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
+I G + E+ + HP V D AVIGVP+P GE
Sbjct: 403 FMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGE 442
Score = 31.5 bits (71), Expect = 1.8
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 103 VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158
V ++ +V+Y +L + + LA L G+ GD V + PEA+V + A +R G
Sbjct: 18 VAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSG 73
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 54.3 bits (131), Expect = 1e-07
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 528 PLPPGTMSTLYKAPQRFMKIYF-----TKF-----PGYYDTMDAGYYDENGYIYVTARDD 577
LPPG T++ R + Y T + D GY DE+GY+Y+T R
Sbjct: 347 ELPPGEPGTIWFEGGRPFE-YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAA 405
Query: 578 DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
+I G + E+++++HP V D AV GVP GE
Sbjct: 406 FMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGE 445
Score = 38.9 bits (91), Expect = 0.010
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 34/183 (18%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
VTY EL E+ + LA ++G+ GD V I+M + A R G ++ V
Sbjct: 25 VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLT 84
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
E ++ + + +I ++ L+++ C + R V +
Sbjct: 85 PAEAAYIVDDSGARALITSA----------------AKLDVARALLKQCPGVRHRLVLDG 128
Query: 230 ELT-PGYDILWDDALAQRLSHRCVPVEA-NDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
+ G+ +A+A L + E+ + LY+SGTTG+ PKGI
Sbjct: 129 DGELEGFVGY-AEAVAG-LPATPIADESLGTDM--LYSSGTTGR------------PKGI 172
Query: 288 LRP 290
RP
Sbjct: 173 KRP 175
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 53.0 bits (128), Expect = 4e-07
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 507 IIRNDGSECE---PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIY---FTKFPGYYDTMD 560
IR+ C P E+G ++ ++ KI F K Y++T D
Sbjct: 266 PIRDANGFCIKVPPGEVGLLLGEI-TDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGD 324
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
D GY Y R D G +ST+ +E+V+ HP V + V GV P
Sbjct: 325 LVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVP 377
Score = 48.8 bits (117), Expect = 8e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R+++YAE + A +L A+GV GD V + M PE +++ LA +LGA+ +++
Sbjct: 2 RRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTT 61
Query: 168 FAARELCARLEHAKPKVIIAASC 190
L + + + +I
Sbjct: 62 QRGEVLAHCINVSDARAVIVDPA 84
Score = 31.1 bits (71), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 258 DPLYILYTSGTTGKPQG--CSELR 279
DP + +YTSGTTG P+ S R
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRR 105
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 52.4 bits (126), Expect = 6e-07
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D D +G++ +T R DVI G +S+ +E+V ++HP V + A I P
Sbjct: 409 GWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHP 468
Query: 614 TKGEIPFCLYIKK 626
E P + +K+
Sbjct: 469 KWDERPLLVVVKR 481
Score = 30.1 bits (68), Expect = 5.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 107 IRKVTYAELQEQVSLLAGSLAAIGVSAGDRV 137
I + TY + + + LA +LAA+GV GDRV
Sbjct: 37 IHRYTYRDCERRAKQLAQALAALGVEPGDRV 67
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 52.3 bits (126), Expect = 6e-07
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D +GYI + R D+I G +S+ +EDV+ HP V AV+ P+P
Sbjct: 416 GWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDP 475
Query: 614 TKGEIPFCLYIKKR 627
GE+P C +++ +
Sbjct: 476 KWGEVP-CAFVELK 488
Score = 44.6 bits (106), Expect = 2e-04
Identities = 55/196 (28%), Positives = 81/196 (41%), Gaps = 47/196 (23%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAI-----V 149
A+IH R+ T+AE + LA +LA G+ GD V + +P IP + V
Sbjct: 35 PAVIHGD------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88
Query: 150 SMLATV------RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI 203
M V RL A S+ F L H + KV+I + E +V R
Sbjct: 89 PMAGAVLNTLNTRLDA-ASIAF----------MLRHGEAKVLIVDT---EFAEVAR---- 130
Query: 204 LNEALEISSCKPDYCIIFQRRCVEEAELTPGY---DILWDDALAQRLSHRCVPVEAN--D 258
EAL + P +I V++ E G + ++ LA + A+ D
Sbjct: 131 --EALALLPG-PKPLVID----VDDPEYPGGRFIGALDYEAFLASGDPDFAWTLPADEWD 183
Query: 259 PLYILYTSGTTGKPQG 274
+ + YTSGTTG P+G
Sbjct: 184 AIALNYTSGTTGNPKG 199
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 50.0 bits (120), Expect = 2e-06
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
PG++ T D G D +G + V R DD I+ G + +E + +HP V D AV G+P+
Sbjct: 233 PGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPD 291
Query: 613 PTKGE 617
G+
Sbjct: 292 DRLGQ 296
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 50.3 bits (120), Expect = 3e-06
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 528 PLPPGTMSTLYKAPQRFMKIYFTK--------FPGYYDTMDAGYYDENGYIYVTARDDDV 579
LPPG + L + Y+ + + T D GY D +GY ++ R D+
Sbjct: 387 VLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDM 446
Query: 580 INVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
I G + +E + HP V + VIG+P+ +GE
Sbjct: 447 IISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGE 484
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 49.6 bits (119), Expect = 4e-06
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDD-DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
G++ T D D +G + R+ D+I G+R+ +E +L HP V + AV+GVP+
Sbjct: 350 GWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPD 409
Query: 613 PTKGE 617
G+
Sbjct: 410 DDLGQ 414
Score = 33.4 bits (77), Expect = 0.44
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 243 LAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
L R HR + + P I+YTSGTTG P+G
Sbjct: 114 LHARSWHRYPEPDPDAPALIVYTSGTTGPPKG 145
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 49.9 bits (120), Expect = 4e-06
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 46/167 (27%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+Y E++E+ + L A+G+ GD++ I+ PE I++ A
Sbjct: 7 SYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQA----------------- 49
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
C + V + + G E + Y ILNE EIS I+F + +
Sbjct: 50 ---CFS--QSLVIVPLYDTLGEE---AIEY--ILNET-EIS-------IVF----CDAVK 87
Query: 231 LTPGYDILWDD--ALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
+ +++ L ++ P + D I+YTSGTTG P+G
Sbjct: 88 V-----YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGV 129
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 49.2 bits (118), Expect = 7e-06
Identities = 53/219 (24%), Positives = 77/219 (35%), Gaps = 64/219 (29%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLY--KAPQRFMKIYFTKFPGYYDTMDA 561
E+ I G +G I V+ P MS + + Q + G+ DT D
Sbjct: 395 EIEIRNEAGMPLPERVVGHICVR---GPSLMSGYFRDEESQDVLAA-----DGWLDTGDL 446
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV--GDTAVIGVPEPTKGEIP 619
GY +GY+Y+T R D+I + G + +E + P++ GD A + + GE
Sbjct: 447 GYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504
Query: 620 FCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEE--- 676
L + C SDEE
Sbjct: 505 VLL---------------------------------------------VQCRISDEERRG 519
Query: 677 -IGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714
+ L LVR G AA +L + LPRT SGK +R
Sbjct: 520 QLIHALAALVRSEFGVEAAVELVPPHS-LPRTSSGKLSR 557
Score = 32.7 bits (75), Expect = 0.82
Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 35/175 (20%)
Query: 107 IRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS---- 162
+ Y L+ + A L A+G+ GDRV + + + + A G +
Sbjct: 47 EEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPL 106
Query: 163 -VVFGGFAA--RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCI 219
+ FGG + +L L A+P II +NEA +
Sbjct: 107 PMGFGGRESYIAQLRGMLASAQPAAIITP---------DELLPWVNEATHGN----PLLH 153
Query: 220 IFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
+ + P D+ AL +D Y+ Y+SG+T P+G
Sbjct: 154 VLSH---AWFKALPEADV----ALP--------RPTPDDIAYLQYSSGSTRFPRG 193
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 48.8 bits (117), Expect = 7e-06
Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 37/174 (21%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
T+A++ +Q +A +L ++G+ GDR+ I E I++ LA G + ++ A
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 171 RELCARLEHAKPKVII--------AASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQ 222
+ LEH+ K + A GV TI+
Sbjct: 68 ETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEG----LPTIILFPYSTLKDHYK------ 117
Query: 223 RRCVEEAELTPGYDILWDDALA--QRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
WDD LA + L R +P E D I+YTSGTTG+P+G
Sbjct: 118 ----------------WDDLLAATEPLQGRPLP-EPEDLATIVYTSGTTGQPKG 154
Score = 34.5 bits (80), Expect = 0.22
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 511 DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYI 570
G E + E G I+++ PG MS YK P++ FT+ G+ T D G DE+G++
Sbjct: 333 PGVELKISEDGEILIR---SPGLMSGYYKDPEK-TAEAFTE-DGWLHTGDKGEIDEDGFL 387
Query: 571 YVTARDDDVINVA-GHRLSTSALEDVVLSHPDVGDTAVIG 609
+T R ++ + G ++ + +E+++ ++P V V+G
Sbjct: 388 KITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVG 427
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 49.0 bits (117), Expect = 8e-06
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 502 SVEVRIIRNDGSECEPHEL--GRIVVKLPL-------PP-----GTMSTLYKAPQRFMKI 547
S+E RI+ NDG E + G I V+ P G ST
Sbjct: 366 SLEYRIV-NDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAND 424
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
FT G+ T D G +G++ + R DVI G + ++ LE+ +++ P+V + AV
Sbjct: 425 RFTA-DGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAV 483
Query: 608 IGVPEPTKGEIP 619
IG P+ GE P
Sbjct: 484 IGYPDDKWGERP 495
Score = 40.2 bits (94), Expect = 0.004
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 111 TYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
T+A + + + LA +L +G++ RV M E + + A +GA+ + +
Sbjct: 40 TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC---V 226
++ + HA+ +VI+A +P + IL E C ++F
Sbjct: 100 NDQIVHIINHAEDEVIVA-----DPRLAEQLGEILKE------CPCVRAVVFIGPSDADS 148
Query: 227 EEAELTPGYDIL-WDDALAQRLSHRCVP-VEANDPLYILYTSGTTGKPQG 274
A + G + ++ L R + P ++ I Y++GTTG P+G
Sbjct: 149 AAAHMPEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKG 198
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 49.0 bits (117), Expect = 9e-06
Identities = 84/338 (24%), Positives = 126/338 (37%), Gaps = 67/338 (19%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+ YAEL Q + LA L GV V I P+ +V +LA ++ G + + +
Sbjct: 1157 LDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYP 1216
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
A L L A GVE ++ ++ L E L + I ++
Sbjct: 1217 AERLAYML----------ADSGVE---LLLTQSHLLERLPQA---EGVSAI----ALDSL 1256
Query: 230 EL------TPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQ 283
L PG L D LA Y++YTSG+TG Q
Sbjct: 1257 HLDSWPSQAPGLH-LHGDNLA----------------YVIYTSGSTG------------Q 1287
Query: 284 PKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMY 343
PKG+ L W M Y + DV + + + V + C+ PL G V+
Sbjct: 1288 PKGVGNTHAALAERLQW-MQATYALDDSDVLMQKAPISFDVS-VWECFWPLITGCRLVL- 1344
Query: 344 EGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
P DP + ++ + V L P L++ E L A + SLR LF G
Sbjct: 1345 -AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDE----PLAAACT--SLRRLFSGG 1397
Query: 404 EHCDHETKNWA-EKSFNVTMLNHWWQTETGHSITA-HC 439
E E +N ++ V + N + TET ++T C
Sbjct: 1398 EALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQC 1435
Score = 31.7 bits (72), Expect = 1.8
Identities = 10/14 (71%), Positives = 14/14 (100%)
Query: 261 YILYTSGTTGKPQG 274
Y++YTSG+TGKP+G
Sbjct: 2337 YLIYTSGSTGKPKG 2350
Score = 30.9 bits (70), Expect = 3.6
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 92 AKKVALIHDSP-VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVS 150
A + A +P +T + + ++YAEL + + LA +L GV RV + + E +V
Sbjct: 2195 AAQAARTPQAPALTFAGQTLSYAELDARANRLARALRERGVGPQVRVGLALERSLEMVVG 2254
Query: 151 MLATVRLGA 159
+LA ++ G
Sbjct: 2255 LLAILKAGG 2263
Score = 30.1 bits (68), Expect = 5.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 261 YILYTSGTTGKPQG 274
Y++YTSG+TG P+G
Sbjct: 3873 YVIYTSGSTGLPKG 3886
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 48.1 bits (115), Expect = 1e-05
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
G ++T D GY D GY+++ R+ I G + + +E +L+ V D V+G+P+
Sbjct: 323 QGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPD 382
Query: 613 PTKGEIPFCLYIKK 626
P GE+ +Y+ K
Sbjct: 383 PHWGEVVTAIYVPK 396
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 47.7 bits (114), Expect = 2e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGA 159
+TYAEL + + LA L A GV RV + + P+ +V++LA ++ GA
Sbjct: 23 ESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGA 74
Score = 46.1 bits (110), Expect = 5e-05
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 50/173 (28%)
Query: 240 DDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLA 299
+DA A R V + +D Y++YTSG+TG +PKG+ A L
Sbjct: 93 EDAGA-----RLVLTDPDDLAYVIYTSGSTG------------RPKGVAIEHRNAAALLQ 135
Query: 300 WTMSVIYNMGQDDVWWTASDMGWVVGHSYICY--------GPLAAGITSVMYEGKPDRTP 351
W +V ++A ++ V+ + IC+ PL+ G V+ +
Sbjct: 136 WAAAV----------FSAEELAGVLAATSICFDLSVFEIFVPLSTGGRVVLADNALALPD 185
Query: 352 DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGE 404
P +V + T P+A R + R D + S+R + +AGE
Sbjct: 186 LP-------AKAEVTLINTVPSAARELLRHDALPS--------SVRTVNLAGE 223
Score = 33.0 bits (76), Expect = 0.56
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 542 QRFMKIYFTKFPG--YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSH 599
+RF+ F PG Y T D +G + R DD + V G R+ +E + S
Sbjct: 317 ERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSI 376
Query: 600 PDVGDTAVIGVPE 612
P V + AV+
Sbjct: 377 PGVAE-AVVVAIG 388
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 46.1 bits (110), Expect = 5e-05
Identities = 94/449 (20%), Positives = 150/449 (33%), Gaps = 100/449 (22%)
Query: 255 EANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG--QDD 312
+D +I ++SG+TG+P+G IL H L ++I +D
Sbjct: 104 LPDDIAFIQFSSGSTGEPKGV-----------ILT----HKNLLTNIEAIIEAAEITSED 148
Query: 313 V---WWTAS-DMGWVVGHSYICYGPLAAGITSVMYEGKPDRT--PDPSQYYRVIHNHKVN 366
V W + DMG + H P A GI + P R P + H+
Sbjct: 149 VFLSWMPLTHDMGLIGFH----LTPTALGINQYLM---PTRLFIRRPLLWLDKASQHRAT 201
Query: 367 GLFTAPTALRVIRREDKDSTLGAQYSTD--SLRYLFVAGEHCDHETKNWAEKSFNVTMLN 424
L + + + + K D S+R +F E + + F M
Sbjct: 202 ILSSPNFGYKYLLKHFKTEK---IIDWDLSSVRLIFNGAEPISADLC----EEFLEKM-- 252
Query: 425 HWWQTETGHSITAHCLGYQHDTVPPKYSTGL---------PFPGYDGKYVNIVMLNWLDG 475
G + + + P Y GL P PG K V +
Sbjct: 253 -------------APFGLRPNAMYPVY--GLAEATLAVSFPKPGEPFKTVCL-------D 290
Query: 476 RAHCVRILPESLRKNVPKGQNATHFTSV-------EVRIIRNDGSECEPHELGRIVVKLP 528
R H + + + PK +A F V E+RI+ + G +G I +K
Sbjct: 291 RNHLK--VGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQIK-- 346
Query: 529 LPPG-TMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRL 587
G +++ Y K T G+ T D G+ NG + +T R D+I V G
Sbjct: 347 ---GDNVTSGYYNNPEATKKSITP-DGWLKTGDLGFL-RNGRLVITGRAKDIIIVNGQNY 401
Query: 588 STSALEDVVLSHPDV--GDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLE 645
+E V + G A GV + + ++++ R LD F L
Sbjct: 402 YPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLDD--------FTPLA 453
Query: 646 RP-TSLLTNPIRVLIKPYGPISSIYCTRS 673
+ + + I P+ SI T S
Sbjct: 454 LKIKRHVNKKMGLNIDHVIPVRSIPKTTS 482
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 45.7 bits (109), Expect = 7e-05
Identities = 109/553 (19%), Positives = 183/553 (33%), Gaps = 123/553 (22%)
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
A+ R E + + I S +YAEL E+ + L A+G+ GD V++
Sbjct: 15 ALQRAAEHAPGRGITYID---ADGSEEFQSYAELLEEAERILAGLRALGLKPGDSVIL-- 69
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201
+ V A + V GGF + A P + V K+
Sbjct: 70 -----QLERNEDFVT--AFWACVLGGFVPVPV------AVPPTYDEPNAAV--AKLRNIW 114
Query: 202 TILNEALEISSC--KPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
+L + ++ A L + ++ + P +DP
Sbjct: 115 ELLGSPVILTDAALVAAL-----AGLRTRAGLEALRVLAIEELRSAPPDAPLHPARPDDP 169
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGIL-RPVGGHIATLAWTMSVIYNMGQDDVW--WT 316
+L TSG+TG P+ C L + IL R G + DDV W
Sbjct: 170 ALLLLTSGSTGVPK-CVVLTH----RNILARSAG---------TVQVNGFTPDDVSLNWM 215
Query: 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTP----DPSQYYRVIHNHKVNGLFTAP 372
D V G + + G + T DP ++ +I ++V + AP
Sbjct: 216 PLDH--VGGIVMLHLRDVYLGCQQIHVP-----TDYILADPLRWLDLIDRYRVTITW-AP 267
Query: 373 T-ALRVIR-REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH----- 425
A ++ ++ + SLRY+ AGE +T + F + +
Sbjct: 268 NFAFALLNDALERIE--DRSWDLSSLRYIINAGEAVVAKT---IRR-FLELLAPYGLPAD 321
Query: 426 -----WWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480
+ +ET +T Y + G+ G
Sbjct: 322 AIRPAFGMSETCSGVT-----YSRGFRTGPDTGGVLVDSLTGP----------------- 359
Query: 481 RILPESLRKNVPKGQNATHFTS-------VEVRIIRNDGSECEPHELGRIVVKLPLPPGT 533
LR A F V +RI+ DG+ E+GR+ V+ P T
Sbjct: 360 ------LRFAAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGP----T 409
Query: 534 MSTLY----KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLST 589
+++ Y +A FT+ G++ T D G+ +G + +T R+ D+I + G
Sbjct: 410 VTSGYYRNPEANAEA----FTE-DGWFRTGDLGFLH-DGRLTITGREKDMIIINGVNYYN 463
Query: 590 SALEDVVLSHPDV 602
+E V P V
Sbjct: 464 HEIEAAVEQVPGV 476
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 45.1 bits (107), Expect = 1e-04
Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 40/230 (17%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY ++ E+V A L A+G + +RV I+ E ++++ R ++
Sbjct: 108 TYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGE 167
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
LC L + +I C + + K +++ + ++ + K + + + +
Sbjct: 168 EALCHSLNETEVTTVI---CDSK-----QLKKLIDISSQLETVKRVIYMDDEGVDSDSSL 219
Query: 231 LTPGYDILWDDALAQRLSHRCVPVEANDPL-----YILYTSGTTGKPQGCSELRSEDQPK 285
+ + ++L + PV+ + P I+YTSG+TG PK
Sbjct: 220 SGSSNWTVSSFSEVEKLG-KENPVDPDLPSPNDIAVIMYTSGSTG------------LPK 266
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLA 335
G++ G +AT+A M+V+ +G++DV Y+ Y PLA
Sbjct: 267 GVMMTHGNIVATVAGVMTVVPKLGKNDV--------------YLAYLPLA 302
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 44.6 bits (106), Expect = 1e-04
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 14/120 (11%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLP-LPPG--TMSTLYKAPQRFMKIYFTKFPGYYDTM 559
+EVR++ DG P +G I ++ + PG TM A G+ DT
Sbjct: 369 LEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDA---------DGWLDTG 419
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV--GDTAVIGVPEPTKGE 617
D GY E G + V R DVI +AG + + +E V G+ + + E
Sbjct: 420 DLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSRE 479
Score = 30.7 bits (70), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLI 139
+ T+ E+ E+ +AG LAA GV GD V +
Sbjct: 28 VRHTWGEVHERARRIAGGLAAAGVGPGDAVAV 59
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 44.3 bits (104), Expect = 2e-04
Identities = 56/251 (22%), Positives = 91/251 (36%), Gaps = 59/251 (23%)
Query: 99 HDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158
+D P + VT+ ++ + + L L G+S+GDRVL+ +P P+ + +LA + G
Sbjct: 20 YDRPAFYAADVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARG 79
Query: 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYC 218
+ F A R +HA AL ++S
Sbjct: 80 VM------AFLANPELHRDDHALAARNTEP------------------ALVVTS--DALR 113
Query: 219 IIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSEL 278
FQ V EA +++ + A + P+ + Y YTSGTTG P+
Sbjct: 114 DRFQPSRVAEAA-----ELMSEAARVAPGGYE--PMGGDALAYATYTSGTTGPPKAA--- 163
Query: 279 RSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYG------ 332
I A ++ + M + + T D G Y YG
Sbjct: 164 ----------------IHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVW 207
Query: 333 -PLAAGITSVM 342
PLA G ++V+
Sbjct: 208 FPLATGGSAVI 218
Score = 36.5 bits (84), Expect = 0.061
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
E+R++ DG+ P G + V+ P + P + G+ DT D
Sbjct: 323 EIRVVAPDGTTAGPGVEGDLWVR---GPAIAKGYWNRPDSPVAN-----EGWLDTRDRVC 374
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT 614
D +G++ R DD + G + +E +++ V + AV+ V E T
Sbjct: 375 IDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVREST 425
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 42.9 bits (101), Expect = 5e-04
Identities = 47/178 (26%), Positives = 69/178 (38%), Gaps = 32/178 (17%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY E+ E+V + +L A G G RV IY P+ IV+M A I ++
Sbjct: 78 TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGP 137
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQR------- 223
+ ++HA+ + V+ K+ K +L PD C +R
Sbjct: 138 GAVDYIVDHAEIDFVF-----VQDKKI---KELLE---------PD-CKSAKRLKAIVSF 179
Query: 224 RCVEEAELTPGYDI-----LWDDAL--AQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
V E E I W D L + P + D I+YTSGT+G P+G
Sbjct: 180 TSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKG 237
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 42.5 bits (100), Expect = 8e-04
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ + D G +GYI + R D+I G +S+ +E+VV +HP V + +V+ P+
Sbjct: 430 GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDE 489
Query: 614 TKGEIPFCLYI 624
GE P C ++
Sbjct: 490 RWGESP-CAFV 499
Score = 33.7 bits (77), Expect = 0.35
Identities = 72/323 (22%), Positives = 117/323 (36%), Gaps = 81/323 (25%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
+ +++H S + T+A+ ++ LA +LA + G V + P IP +
Sbjct: 36 RKSVVHGS------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFG 89
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEI--- 210
GA+ + V A + LEH+K +V++ + T+ EAL+I
Sbjct: 90 VPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQ---------EFFTLAEEALKILAE 140
Query: 211 ---SSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEA----NDPLY-- 261
SS KP I+ + + P +L L + E DP +
Sbjct: 141 KKKSSFKPPLLIV-----IGDPTCDPK-------SLQYALGKGAIEYEKFLETGDPEFAW 188
Query: 262 -----------ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310
+ YTSGTT P+G +L G ++ L + ++I+ M +
Sbjct: 189 KPPADEWQSIALGYTSGTTASPKGV-----------VLHHRGAYLMAL--SNALIWGMNE 235
Query: 311 DDVW-WTASDM---GWVVGHSYICYG-PLAA-GITSVMYEGKPDRTPDPSQYYRVIHNHK 364
V+ WT GW C+ LAA T++ R Y I N+
Sbjct: 236 GAVYLWTLPMFHCNGW-------CFTWTLAALCGTNICL-----RQVTAKAIYSAIANYG 283
Query: 365 VNGLFTAPTALRVIRREDKDSTL 387
V AP L I K T+
Sbjct: 284 VTHFCAAPVVLNTIVNAPKSETI 306
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 41.3 bits (97), Expect = 0.002
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 514 ECEPHELGRIVVKLPLPPGTMSTLY----KAPQ-RFMKIYFTKFPGYYDTMDAGYYDENG 568
E G ++ ++ + Y A + + ++ F K +Y T D D +G
Sbjct: 293 RAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADG 352
Query: 569 YIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
Y R D +ST + DV+ + P V + V GV P
Sbjct: 353 RWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVP 397
Score = 35.5 bits (82), Expect = 0.10
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 250 RCVPVEANDPLYILYTSGTTGKPQGC 275
+ V V+ +DP ++YTSGTTG P+GC
Sbjct: 80 KFVIVDPDDPAALIYTSGTTGLPKGC 105
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 41.1 bits (97), Expect = 0.002
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R +TYAEL E++ LA +G++ G V IY E + S+ + + V+
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPN--KVVRYKTILNEALEISSCKPDYCIIFQRRC 225
L L + K I+ V PN ++++ + N I
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNV-PNLLRLMKSGGMPN------------TTIIYLDS 226
Query: 226 VEEAELTPGYDIL-WDDALA---QRLSHRCVPV-EANDPL-YILYTSGTTGKPQG 274
+ + T G ++ W D +A SH + + E ND L I+YTSGTTG P+G
Sbjct: 227 LPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKG 281
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 40.3 bits (95), Expect = 0.003
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 38/165 (23%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
++Y +L ++V LLA L A+GV R+ + + + +++ LA ++ G + + F+
Sbjct: 3 LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
A + +H + G + ++++ + +S A
Sbjct: 60 A----QQTQH------LLNDAGAD--------LLISDDPDAAS----------------A 85
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
TP + D +A R S V + A I YTSG+TG+P+G
Sbjct: 86 LHTPFATLGEDLYIALRPSANPVELPA-GTAKITYTSGSTGQPKG 129
Score = 33.8 bits (78), Expect = 0.31
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDV-INVAGHRLSTSALEDVVLSHPDVGDTAVIGVP 611
++ T D G+ DE GY+Y+ R ++ I G +S +E + P + V G
Sbjct: 325 DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFGDA 384
Query: 612 EP 613
+P
Sbjct: 385 QP 386
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 39.9 bits (94), Expect = 0.004
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 28/177 (15%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R++TYAE E+V +A +L G+SA ++I E + LA + G ++ V
Sbjct: 68 RRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPA 127
Query: 168 FA--ARELCARLEHA----KPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIF 221
++ +++ +L H P ++ A + R AL + D ++
Sbjct: 128 YSLVSQDF-GKLRHVLELLTPGLVFAD----DGAAFAR-------ALA-AVVPADVEVVA 174
Query: 222 QRRCVEEAELTPGYDILWDDALAQRLSHRCVP----VEANDPLYILYTSGTTGKPQG 274
R V TP + LA + V + L+TSG+TG P+
Sbjct: 175 VRGAVPGRAATP-----FAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKA 226
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 39.6 bits (92), Expect = 0.006
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 20/172 (11%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY E+ + V L SL ++GV + IY PE I+SM A G ++ A
Sbjct: 81 TYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGA 140
Query: 171 RELCARLEHAKPKVIIAASCGVE------PNKVVRYKTILNEALEISSCKPDYCIIFQRR 224
+ + H++ ++ + PN KT+++ + Q+
Sbjct: 141 GAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVS----FGGVSRE-----QK- 190
Query: 225 CVEEAELTPGYDILWDD--ALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
EEAE WD+ L + + + +D I+YTSGTTG P+G
Sbjct: 191 --EEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKG 240
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 39.3 bits (92), Expect = 0.007
Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 22/181 (12%)
Query: 101 SPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI 160
P RKVTY E + V LA +L +G+ G V+I E + LA ++ G
Sbjct: 72 EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVP 131
Query: 161 -------HSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
+S++ A + L KP+V+ A S G + + + + +
Sbjct: 132 AAPVSPAYSLMSHDHAKLKHLFDL--VKPRVVFAQS-GAPFARALA--ALDLLDVTVVHV 186
Query: 214 KPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQ 273
I + A P + A ++ V L+TSG+TG P+
Sbjct: 187 TGPGEGIASIAFADLAATPPTAAV---AAAIAAITPDTVA-------KYLFTSGSTGMPK 236
Query: 274 G 274
Sbjct: 237 A 237
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 39.1 bits (91), Expect = 0.008
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 19/172 (11%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TY E+ + + ++ + GV+ GDR IY PE I++M A G + ++
Sbjct: 78 LTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLG 137
Query: 170 ARELCARLEHAKPKVI------IAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQR 223
A + + HA+ + I++ P KTI++ ++SS +
Sbjct: 138 ANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFG-DVSSEQK-------- 188
Query: 224 RCVEEAELTPGYDILWDD-ALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
EEAE W++ +L L P + D I+YTSGTTG+P+G
Sbjct: 189 ---EEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKG 237
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 38.0 bits (89), Expect = 0.016
Identities = 43/184 (23%), Positives = 69/184 (37%), Gaps = 43/184 (23%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM-PLIPEAIVSMLATVRLGAIHSVVFG 166
R+VTYAE QV +A +L +G+SA ++I I A++ LA + G + V
Sbjct: 24 RRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALL-ALAAMYAGVPVAPVSP 82
Query: 167 GFA--ARELCARLEHA----KPKVIIA----------ASCGVEPNKVVRYKTILNEALEI 210
++ +++ A+L H P + A A+ G+ VV +
Sbjct: 83 AYSLLSKDF-AKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVV---AVRGAP--- 135
Query: 211 SSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTG 270
I F P + D A A V + L+TSG+TG
Sbjct: 136 ----GGPAIAFA----ALLATPPTAAV--DAAFAA--------VGPDTVAKYLFTSGSTG 177
Query: 271 KPQG 274
P+
Sbjct: 178 LPKA 181
>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009). This is
a small domain that is found C terminal to pfam00501. It
has a central beta sheet core that is flanked by alpha
helices.
Length = 43
Score = 32.8 bits (76), Expect = 0.031
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 692 IAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
A + V LP+TRSGK R+ + +A + L
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIALGEDLGD 37
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 36.8 bits (86), Expect = 0.041
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
+AL + +T+ +L ++ LA A GV G V + PE +++ LA
Sbjct: 19 AIALRLND------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72
Query: 154 TVRLGA 159
++ GA
Sbjct: 73 LLQCGA 78
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 36.5 bits (85), Expect = 0.053
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVV-LSHPDVGDTAVIGVPE 612
G+YDT D DE G+I + R +AG +S +A+E++ PD A + +P+
Sbjct: 1010 GWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPD-ALHAAVSIPD 1068
Query: 613 PTKGE 617
KGE
Sbjct: 1069 ARKGE 1073
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 35.5 bits (82), Expect = 0.096
Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 51/168 (30%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R T+ EL E + +A A G +GD V ++M E + L ++G +++
Sbjct: 2 RHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALI--- 58
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
N +R +++L+ + +S K +IF
Sbjct: 59 ---------------------------NSNLRLESLLH-CITVSKAK---ALIFN----- 82
Query: 228 EAELTPGYDILWDDALAQRLSH--RCVPVEANDPLYILYTSGTTGKPQ 273
L D L Q + V D L+ +YTSGTTG P+
Sbjct: 83 ----------LLDPLLTQSSTEPPSQDDVNFRDKLFYIYTSGTTGLPK 120
Score = 33.9 bits (78), Expect = 0.29
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 546 KIY---FTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV 602
KI F K + + D DE GY+Y R D G +ST+ +E ++ + +
Sbjct: 338 KIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGILSNVLGL 397
Query: 603 GDTAVIGVPEP 613
D V GV P
Sbjct: 398 EDVVVYGVEVP 408
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 35.5 bits (82), Expect = 0.11
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI 160
R TY + +++ + L A+GV GDRV + M P A+V++ A RLGA+
Sbjct: 471 RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV 523
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive
yellow protein activation family. This model represents
the 4-coumarate--CoA ligase associated with biosynthesis
of the 4-hydroxy cinnamyl (also called 4-coumaroyl)
chromophore covalently linked to a Cys residue in
photoactive yellow protein of Rhodobacter spp. and
Ectothiorhodospira halophila. This enzyme is designated
6.2.1.12 and therefore joins a number of plant enzymes
linked to lignin biosynthesis and given similar names.
Length = 386
Score = 34.9 bits (80), Expect = 0.15
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
D D +D++G + R D+++ V G +S + D++ +P V AV
Sbjct: 278 DLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAV 328
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 35.0 bits (81), Expect = 0.16
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 16/182 (8%)
Query: 99 HDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158
P +K+ R TY ++ E ++LA L G+ GD V+IY + +V+++ ++ G
Sbjct: 261 FLDPSSKT-RSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAG 319
Query: 159 AIHSVVFGGFAARELCARLEHAKPK-VIIAASCGVEPNKVVRYKTILNEALEISSCKPDY 217
A SV+ + L AKP+ +I+ G V Y +++ LE+ + P
Sbjct: 320 ATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDY---IDKELELRTEIPAL 376
Query: 218 CIIFQRRCVEEAELTPGY-DILWDDALAQRLSHRCVP----VEANDPLYILYTSGTTGKP 272
+ ++ L G + D LA + + P V + + +TSG+ G P
Sbjct: 377 AL------QDDGSLVGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIP 430
Query: 273 QG 274
+G
Sbjct: 431 KG 432
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 34.5 bits (80), Expect = 0.21
Identities = 41/170 (24%), Positives = 60/170 (35%), Gaps = 33/170 (19%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIH---SVVFG 166
+T+++L + +A L G S GDR +I P E IV+ L ++ G I SV G
Sbjct: 36 LTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQG 94
Query: 167 GFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
G + A L P V++ S V+ V Y V
Sbjct: 95 GAHDERVSAVLRDTSPSVVLTTSAVVD--DVTEY-------------------------V 127
Query: 227 EEAELTPGYDILWDDAL--AQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
++ D L P + Y+ YTSG+T P G
Sbjct: 128 APQPGQSAPPVIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAG 177
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 33.9 bits (78), Expect = 0.35
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
G+YDT D +DE G++ + R +AG +S +E + L A +
Sbjct: 590 RGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSD 649
Query: 613 PTKGE 617
+KGE
Sbjct: 650 ASKGE 654
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 33.9 bits (78), Expect = 0.38
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAG 584
G+ + D G+ D++G++Y+T R ++I AG
Sbjct: 419 GWLHSGDLGFLDDDGFLYITGRIKELIITAG 449
Score = 30.4 bits (69), Expect = 3.8
Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 22/174 (12%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
+TY + E A + +G+ V I PE ++ + + G I ++
Sbjct: 8 TLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTN 67
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQ-RRCVE 227
+ E ++ ++ VV L + L I P I Q R ++
Sbjct: 68 SPEACQYVAETSEANIL-----------VVDNAKQLQKILAIQDQLPHLKAIIQYREPLK 116
Query: 228 EAELTPGYDILWDDALAQ-------RLSHRCVPVEANDPLYILYTSGTTGKPQG 274
E E P W + + +L + N ++YTSGTTG P+G
Sbjct: 117 EKE--PNL-YSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKG 167
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 32.9 bits (75), Expect = 0.62
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSH------PDVGDTAVI 608
+Y T D GY D +G +++ R + + +S ALE +++ G V
Sbjct: 411 WYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVC 470
Query: 609 GVPEPTKGE-IPFCLY 623
G+P GE + CL+
Sbjct: 471 GLP----GEKVRLCLF 482
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 32.4 bits (74), Expect = 1.1
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 19/174 (10%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV---- 163
+ +TY E + + L G+ G V +Y PE ++ A + SV
Sbjct: 77 KWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYV-SVPLYD 135
Query: 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQR 223
G A + + HA+ +AA P + T+L+ EI S + +
Sbjct: 136 TLGPDAVKFIV---NHAE----VAAIF-CVPQTL---NTLLSCLSEIPSVRLIVVVGGAD 184
Query: 224 RCVEEAELTPGYDIL-WDDALAQ-RLSHRC-VPVEANDPLYILYTSGTTGKPQG 274
+ G +I+ + LAQ R S + P + D I YTSGTTG P+G
Sbjct: 185 EPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKG 238
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 29.7 bits (67), Expect = 4.1
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 97 LIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY-MPLIPEAIVSMLATV 155
L+H + + + L +LA L G S G Y + + ++L +
Sbjct: 3 LLHGAGGSAESWRPLAEALAAGYRVLAPDLPGHGDSDGPPRTPYSLEDDAADLAALLDAL 62
Query: 156 RLGAI----HSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
LG + HS GG A AR +++ + + +++
Sbjct: 63 GLGPVVLVGHS--LGGAVALAAAARRPERVAGLVLISPPLRDLEELLAA 109
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 30.5 bits (69), Expect = 4.1
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 83 IDRHVERGMAKKVA---LIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLI 139
I+R++ + VA L H ++T+ +L ++ + L + GDRV I
Sbjct: 40 IERNI-ANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAI 97
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFG----GFAARELCARLEHAKPKVIIAASCGVEP 194
P + + A ++ G I +F G A R L L A+P V++ + E
Sbjct: 98 LAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAER-LDTALRDAEPTVVLTTTAAAEA 155
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 29.8 bits (68), Expect = 4.9
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 15/72 (20%)
Query: 139 IYM------PLIPEAIVSML--ATVRLGAIHSV-VFGGFA------ARELCARLEHAKPK 183
IY+ P+ PE + +ML T G S+ FG A ARE A+L A P+
Sbjct: 3 IYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPE 62
Query: 184 VIIAASCGVEPN 195
II S E N
Sbjct: 63 EIIFTSGATESN 74
>gnl|CDD|222073 pfam13361, UvrD_C, UvrD-like helicase C-terminal domain. This
domain is found at the C-terminus of a wide variety of
helicase enzymes. This domain has a AAA-like structural
fold.
Length = 342
Score = 30.0 bits (68), Expect = 5.3
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 27 KYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWF 71
Y + ++ E E ++ + + K+++ D S Q +
Sbjct: 216 GYREYLKEEKEEGEERLENLEELLSLLKEYEGSEDESLQSLLDFL 260
>gnl|CDD|193523 cd05645, M20_peptidase_T, M20 Peptidase T specifically cleaves
tripeptides. Peptidase M20 family, Peptidase T (PepT;
tripeptide aminopeptidase; tripeptidase) subfamily and
similar proteins. PepT acts only on tripeptide
substrates, and is thus termed a tripeptidase. It
catalyzes the release of N-terminal amino acids with
hydrophobic side chains from tripeptides with high
specificity; dipeptides, tetrapeptides or tripeptides
with the N-terminus blocked are not cleaved.
Tripeptidases are known to function at the final stage
of proteolysis in lactococcal bacteria and release amino
acids from tripeptides produced during the digestion of
milk proteins such as casein.
Length = 398
Score = 29.8 bits (67), Expect = 6.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 655 IRVLIK---PYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGL 704
+ VL + P+GPI + DEE+GK K L E A+ + + G
Sbjct: 148 LNVLKENKIPHGPIRVAF--TPDEEVGKGAKHLDVEKFKAKWAYTVDSGGVGE 198
>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras
GTPases. RGK subfamily. The RGK (Rem, Rem2, Rad,
Gem/Kir) subfamily of Ras GTPases are expressed in a
tissue-specific manner and are dynamically regulated by
transcriptional and posttranscriptional mechanisms in
response to environmental cues. RGK proteins bind to the
beta subunit of L-type calcium channels, causing
functional down-regulation of these voltage-dependent
calcium channels, and either termination of
calcium-dependent secretion or modulation of electrical
conduction and contractile function. Inhibition of
L-type calcium channels by Rem2 may provide a mechanism
for modulating calcium-triggered exocytosis in
hormone-secreting cells, and has been proposed to
influence the secretion of insulin in pancreatic beta
cells. RGK proteins also interact with and inhibit the
Rho/Rho kinase pathway to modulate remodeling of the
cytoskeleton. Two characteristics of RGK proteins cited
in the literature are N-terminal and C-terminal
extensions beyond the GTPase domain typical of Ras
superfamily members. The N-terminal extension is not
conserved among family members; the C-terminal extension
is reported to be conserved among the family and lack
the CaaX prenylation motif typical of
membrane-associated Ras proteins. However, a putative
CaaX motif has been identified in the alignment of the
C-terminal residues of this CD.
Length = 219
Score = 29.3 bits (66), Expect = 6.9
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 13/70 (18%)
Query: 383 KDSTLGAQYSTDS-LRYLFVAGEH----CDHETKNWAEKSFNV-------TMLNHWWQTE 430
+ LG S L +F AG + + + E++ +V + +HW Q E
Sbjct: 2 RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQ-E 60
Query: 431 TGHSITAHCL 440
G + C+
Sbjct: 61 DGMWLEDSCM 70
>gnl|CDD|153066 cd03596, CLECT_tetranectin_like, C-type lectin-like domain (CTLD)
of the type found in the tetranectin (TN), cartilage
derived C-type lectin (CLECSF1), and stem cell growth
factor (SCGF). CLECT_tetranectin_like: C-type
lectin-like domain (CTLD) of the type found in the
tetranectin (TN), cartilage derived C-type lectin
(CLECSF1), and stem cell growth factor (SCGF). CTLD
refers to a domain homologous to the
carbohydrate-recognition domains (CRDs) of the C-type
lectins. TN binds to plasminogen and stimulates
activation of plasminogen, playing a key role in the
regulation of proteolytic processes. The TN CTLD binds
two calcium ions. Its calcium free form binds to
various kringle-like protein ligands. Two residues
involved in the coordination of calcium are critical
for the binding of TN to the fourth kringle (K4) domain
of plasminogen (Plg K4). TN binds the kringle 1-4 form
of angiostatin (AST K1-4). AST K1-4 is a fragment of
Plg, commonly found in cancer tissues. TN inhibits the
binding of Plg and AST K1-4 to the extracellular matrix
(EMC) of endothelial cells and counteracts the
antiproliferative effects of AST K1-4 on these cells.
TN also binds the tenth kringle domain of
apolipoprotein (a). In addition, TN binds fibrin and
complex polysaccharides in a Ca2+ dependent manner.
The binding site for complex sulfated polysaccharides
is N-terminal to the CTLD. TN is homotrimeric;
N-terminal to the CTLD is an alpha helical domain
responsible for trimerization of monomeric units. TN
may modulate angiogenesis through interactions with
angiostatin and coagulation through interaction with
fibrin. TN may play a role in myogenesis and in bone
development. Mice having a deletion in the TN gene
exhibit a kyphotic spine abnormality. TN is a useful
prognostic marker of certain cancer types. CLECSF1 is
expressed in cartilage tissue, which is primarily
intracellular matrix (ECM), and is a candidate for
organizing ECM. SCGF is strongly expressed in bone
marrow and is a cytokine for primitive hematopoietic
progenitor cells.
Length = 129
Score = 28.1 bits (63), Expect = 7.7
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 21 TSNQNDKYYDAYRKSIEAPESFWTDVGNMA---TWS---------KKWDRILDNSDQP 66
S++ND D + S+ W + +M W W+R + + QP
Sbjct: 40 DSDENDALRDYVKASVPGNWEVWLGINDMVAEGKWVDVNGSPISYFNWEREI--TAQP 95
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 29.3 bits (66), Expect = 8.7
Identities = 10/13 (76%), Positives = 13/13 (100%)
Query: 262 ILYTSGTTGKPQG 274
I+YTSGT+GKP+G
Sbjct: 309 IVYTSGTSGKPKG 321
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,374,418
Number of extensions: 3843980
Number of successful extensions: 4139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3869
Number of HSP's successfully gapped: 433
Length of query: 737
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 633
Effective length of database: 6,324,786
Effective search space: 4003589538
Effective search space used: 4003589538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)