RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8076
(737 letters)
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 534 bits (1379), Expect = 0.0
Identities = 207/709 (29%), Positives = 333/709 (46%), Gaps = 116/709 (16%)
Query: 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQP---FTKWFVGGEINACYN 81
++Y Y++SI P++FW + G + W + ++ + S P KW+ G +N N
Sbjct: 21 PEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAAN 80
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
+DRH++ + A+I + T + ++Y EL V A +L +G+ GD V IYM
Sbjct: 81 CLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYM 139
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201
P++PEA V+MLA R+GA+HSV+FGGF+ + + + +++I A GV + + K
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLK 199
Query: 202 TILNEALEISSCKP-DYCIIFQRRCVEEAELTPGYDILWDDALA-QRLSHRCVPVEANDP 259
+++AL+ + ++ I+ +R + + G D+ W D + H+ + A DP
Sbjct: 200 KNVDDALKNPNVTSVEHVIVL-KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDP 258
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319
L+ILYTSG+TGK PKG+L GG++ A T +++ D++W +D
Sbjct: 259 LFILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD 306
Query: 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379
+GWV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+TAPTA+R +
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPN-WPTPARMCQVVDKHQVNILYTAPTAIRALM 365
Query: 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETG-HSI 435
E + SLR L GE + E W K +++ WWQTETG I
Sbjct: 366 AEGDKAI--EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI 423
Query: 436 TAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495
T L + S PF G
Sbjct: 424 TP--LPGAIELKAG--SATRPFFG------------------------------------ 443
Query: 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555
V+ ++ N+G E G +V+ PG TL+ +RF + YF+ F
Sbjct: 444 -------VQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQTYFSTFKNM 495
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTK 615
Y + D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV+G+P K
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 616 GEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDE 675
G+ + + V + S
Sbjct: 556 GQ-------------------AIYAY---------------VTLNHGEEPS--------P 573
Query: 676 EIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
E+ E++ VR+ IGP+A + LP+TRSGK R+ + +A
Sbjct: 574 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 519 bits (1338), Expect = e-176
Identities = 211/701 (30%), Positives = 321/701 (45%), Gaps = 114/701 (16%)
Query: 26 DKYYDAYRKSIEAPESFWTDVGN-MATWSKKWDRILDNSDQ------PFTKWFVGGEINA 78
Y +++SIE P F+ WSK +D++ + WF+ G++NA
Sbjct: 24 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNA 83
Query: 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSL-AAIGVSAGDRV 137
CYN +DRH + K A+I + +TY EL E+V +A L ++GV GD V
Sbjct: 84 CYNCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTV 142
Query: 138 LIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKV 197
+YMP++PEAI+++LA R+GAIHSVVF GF++ L R+ KV+I KV
Sbjct: 143 AVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKV 202
Query: 198 VRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALA-QRLSHRCVPVEA 256
+ K I+++AL + + +++++ D+ W + + C PV++
Sbjct: 203 IETKRIVDDALRETPGV-RHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDS 261
Query: 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316
DPL++LYTSG+TG PKG+ G++ TM ++ Q+DV++T
Sbjct: 262 EDPLFLLYTSGSTGA------------PKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFT 309
Query: 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376
A D+GW+ GH+Y+ YGPL G ++++EG P P+ S+Y+ +I HKV + APTALR
Sbjct: 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPA-YPNYSRYWDIIDEHKVTQFYVAPTALR 368
Query: 377 VIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETG- 432
+++R +S SLR L GE E W + + +++ +WQTE+G
Sbjct: 369 LLKRAGDSYI--ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 426
Query: 433 HSITAHCL-GYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNV 491
H +T L G P S PF G I L
Sbjct: 427 HLVTP--LAGGVTPMKPG--SASFPFFG----------------------IDAVVLDP-- 458
Query: 492 PKGQNATHFTSVEVRIIRNDGSECEPHEL-GRIVVKLPLPPGTMSTLYKAPQRFMKIYFT 550
N G E G + VK P T++K R++ Y
Sbjct: 459 ------------------NTGEELNTSHAEGVLAVKAAW-PSFARTIWKNHDRYLDTYLN 499
Query: 551 KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
+PGYY T D D++GYI++ R DDV+NV+GHRLST+ +E ++ P V + AV+G
Sbjct: 500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF 559
Query: 611 PEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYC 670
+ G+ + F V++K S
Sbjct: 560 NDDLTGQ-------------------AVAAF---------------VVLKN-KSSWSTAT 584
Query: 671 TRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGK 711
++I K L VR+ IGP AA KL V LP+TRSGK
Sbjct: 585 DDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGK 625
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 438 bits (1128), Expect = e-146
Identities = 148/715 (20%), Positives = 247/715 (34%), Gaps = 160/715 (22%)
Query: 31 AYRKSIEAPESFWTDV-GNMATWSKKWDRILDNSD-----QPFTKWFVGGEINACYNAID 84
+ D +M + ++ D + F K V N Y+ +D
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMTSLLSQFVSKTDFESYEDFQENF-KILVPENFNFAYDVVD 63
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
+ +K+A+I + + T+ +L+ A G+ GD V++ +
Sbjct: 64 VYARDS-PEKLAMIWCDD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121
Query: 145 PEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL 204
+ ML +LGAI R++ R+E A K+I+ + P +V
Sbjct: 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQV------- 174
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH----RCVPVEANDPL 260
E + D I ++ ++ G+ + V + D
Sbjct: 175 ---DEAHAECGD---IPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDIC 228
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVG---GHIATLAWTMSVIYNMGQDDVWWTA 317
+ ++SGT G PK + GHI T + N+ D + +T
Sbjct: 229 LVYFSSGTAGF------------PKMVEHDNTYPLGHILTAKY----WQNVEDDGLHYTV 272
Query: 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
+D GW YG AG +Y+ DR + + V PT R
Sbjct: 273 ADSGWGKCVWGKLYGQWIAGCAVFVYD--YDR-FEAKNMLEKASKYGVTTFCAPPTIYRF 329
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITA 437
+ +ED + Y+ +L+Y VAGE + E N + + ++ + QTET +I
Sbjct: 330 LIKEDL-----SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT 384
Query: 438 HCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
+ PK S G P PGY
Sbjct: 385 ------FPWMEPKPGSIGKPTPGYK----------------------------------- 403
Query: 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKL--PLPPGTMSTLYKAPQRFMKIYFTKFPG 554
+ ++ DG CE E G IV+ P G K P+R + + G
Sbjct: 404 --------IELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW---HDG 452
Query: 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT 614
YY T D + DE+GY++ R DD+I +G+++ +E ++ HP V + A+ GVP+P
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPV 512
Query: 615 KGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSD 674
+G++ I VL K Y P
Sbjct: 513 RGQVIKA-TI--------------------------------VLTKDYTP---------S 530
Query: 675 EEIGKELKELVREAIGPIAA-----FKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
+ + EL++ V+ P F V LP+T SGK R I D +++
Sbjct: 531 DSLKNELQDHVKNVTAPYKYPRIIEF-----VPELPKTISGKIRRVEIRDKDQSQ 580
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 397 bits (1023), Expect = e-130
Identities = 131/672 (19%), Positives = 223/672 (33%), Gaps = 150/672 (22%)
Query: 67 FTKWFVGGEINACYNAIDRHVERGMAK----KVALIHDSPVTKSIRKVTYAELQEQVSLL 122
+ V + N + +D + A AL + + EL E
Sbjct: 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNG-KGKELMWNFRELSENSQQA 86
Query: 123 AGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAK 181
A L+ A G+ GDRV + +P +PE + +L +R G I + ++ RL+ +K
Sbjct: 87 ANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSK 146
Query: 182 PKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDD 241
K I+A ++ E+ + + + + V E + +
Sbjct: 147 AKAIVAGDEVIQ---------------EVDTVASECPSLRIKLLVSEKS--CDGWLNFKK 189
Query: 242 ALA-QRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAW 300
L +H CV + + I +TSGT+G PK
Sbjct: 190 LLNEASTTHHCVETGSQEASAIYFTSGTSGL------------PKMAEHSYSSLGLKAKM 237
Query: 301 TMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVI 360
+ D+ WT SD GW++ P A G + ++ DP + +
Sbjct: 238 DAGWT-GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK---FDPLVILKTL 293
Query: 361 HNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNV 420
++ + + AP R++ ++D + Y L+ GE ET +
Sbjct: 294 SSYPIKSMMGAPIVYRMLLQQDL-----SSYKFPHLQNCVTVGESLLPETLENWRAQTGL 348
Query: 421 TMLNHWWQTETGHSITAHCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHC 479
+ + QTETG + T+ K G YD
Sbjct: 349 DIRESYGQTETGLTCMV------SKTMKIKPGYMGTAASCYD------------------ 384
Query: 480 VRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP--LPPGTMSTL 537
V+II + G+ P G I +++ P G S
Sbjct: 385 -------------------------VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGY 419
Query: 538 YKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVL 597
P + ++ D G DE+GY R DD+IN +G+R+ S +E+ ++
Sbjct: 420 VDNPDKTAANI---RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 598 SHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRV 657
HP V +TAVI P+P +GE+ ++ V
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKA-FV--------------------------------V 503
Query: 658 LIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAA-----FKLSTSVTGLPRTRSGKT 712
L + E++ KEL++ V+ P F V LP+T +GK
Sbjct: 504 LASQFLSHDP-------EQLTKELQQHVKSVTAPYKYPRKIEF-----VLNLPKTVTGKI 551
Query: 713 ARKSIVDMARNK 724
R + D
Sbjct: 552 QRAKLRDKEWKM 563
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 309 bits (793), Expect = 6e-97
Identities = 122/662 (18%), Positives = 217/662 (32%), Gaps = 150/662 (22%)
Query: 57 DRILDNSDQP--FTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAE 114
+ +L+ + P T N + R K A I D+ TY E
Sbjct: 2 EALLEKAANPPAATVEAPPALFNFAAYLFRLNETRA--GKTAYIDDT------GSTTYGE 53
Query: 115 LQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELC 174
L+E+ A +L +GV +R+L+ M V+ L + G + V +
Sbjct: 54 LEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYV 113
Query: 175 ARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234
L H+ + +IA+ V+ + +ALE S + D C + + E P
Sbjct: 114 YMLTHSHARAVIASGALVQ---------NVTQALE--SAEHDGCQLI---VSQPRESEPR 159
Query: 235 YDILWDDALAQR-LSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGG 293
L+++ + + + +D + LY+SG+TGK PKG +
Sbjct: 160 LAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGK------------PKGTVHTHAN 207
Query: 294 HIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDP 353
T I + ++DV ++A+ + + G PL+ G T+++ + P
Sbjct: 208 LYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAER----PTA 263
Query: 354 SQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNW 413
+ + H+ + PT + + ++R AGE E
Sbjct: 264 DAIFARLVEHRPTVFYGVPTLYANMLVSPN----LPARADVAIRICTSAGEALPREIGER 319
Query: 414 AEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNW 472
F +L+ TE H ++ G +Y +TG P PGY
Sbjct: 320 FTAHFGCEILDGIGSTEMLHIFLSNRAG------AVEYGTTGRPVPGY------------ 361
Query: 473 LDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPG 532
E+ + G E+G + +K P
Sbjct: 362 -------------------------------EIELRDEAGHAVPDGEVGDLYIK---GPS 387
Query: 533 TMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSAL 592
+ ++ F + + D NG R DD++ V+G +S +
Sbjct: 388 AAVMYWNNREKSRA-TFLG--EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEV 444
Query: 593 EDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLT 652
E V++ H V + AV+GV ++
Sbjct: 445 EMVLVQHDAVLEAAVVGVDHG-GLVKT-RAFV---------------------------- 474
Query: 653 NPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRS 709
VL + + P E + +ELK V++ +A K V LP+T +
Sbjct: 475 ----VLKREFAP---------SEILAEELKAFVKDR---LAPHKYPRDIVFVDDLPKTAT 518
Query: 710 GK 711
GK
Sbjct: 519 GK 520
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 199 bits (508), Expect = 2e-55
Identities = 123/654 (18%), Positives = 202/654 (30%), Gaps = 161/654 (24%)
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
+ RH +A+I R+++Y EL + LA SL G+ G+ L+ +
Sbjct: 32 ILTRHAASD---SIAVIDGE------RQLSYRELNQAADNLACSLRRQGIKPGETALVQL 82
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFA--ARELCARLEHAKPKVIIAASCGVEPNKVVR 199
+ E ++ A ++LG V F+ EL A +P ++IA + +
Sbjct: 83 GNVAELYITFFALLKLGVA--PVLALFSHQRSELNAYASQIEPALLIAD----RQHALFS 136
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
LN + S ++ G L D P A++
Sbjct: 137 GDDFLNTFVTEHSSIRVVQLLND----------SGEHNLQDAINHPAEDFTATPSPADEV 186
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTA 317
Y + GTTG PK I R H I Q + A
Sbjct: 187 AYFQLSGGTTGT------------PKLIPR---THNDYYYSVRRSVEICQFTQQTRYLCA 231
Query: 318 SDM----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
G AG T V+ P + + +I H+VN P
Sbjct: 232 IPAAHNYAMSSP---GSLGVFLAGGTVVLAA-----DPSATLCFPLIEKHQVNVTALVPP 283
Query: 374 ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGH 433
A+ + + + ++ SL+ L V G + + E
Sbjct: 284 AVSLWLQALIEG--ESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEG-- 339
Query: 434 SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493
+ L D+ T G + P+
Sbjct: 340 LVNYTRL---DDSAEKIIHT--------------------QGYP----MCPD-------- 364
Query: 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553
EV + +G+ E+GR++ + P T YK+PQ F
Sbjct: 365 ---------DEVWVADAEGNPLPQGEVGRLMTR---GPYTFRGYYKSPQHNASA-FDA-N 410
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y + D D GYI V R+ D IN G +++ +E+++L HP V A++ + +
Sbjct: 411 GFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDE 470
Query: 614 TKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRS 673
GE C Y+ + PL
Sbjct: 471 LMGEKS-CAYLVVKEPLR------------------------------------------ 487
Query: 674 DEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNK 724
+++ +RE IA FKL V LP T GK +K + ++
Sbjct: 488 ----AVQVRRFLREQ--GIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 197 bits (503), Expect = 3e-55
Identities = 121/654 (18%), Positives = 212/654 (32%), Gaps = 164/654 (25%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ + ++A+ + +Y EL + LA +G+ DRV++ +P
Sbjct: 31 LRDRAAK-YGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFA--ARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
I E + A RLGA+ VF + + E+ E A+ I + Y
Sbjct: 84 NIKEFFEVIFALFRLGAL--PVFALPSHRSSEITYFCEFAEAAAYIIP----DAYSGFDY 137
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
+++ + + + E + +D + + + V+++D
Sbjct: 138 RSLARQVQSKLP--------TLKNIIVAGE--AEEFLPLEDLHTEPV--KLPEVKSSDVA 185
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTAS 318
++ + G+TG K I R H + + V+ A
Sbjct: 186 FLQLSGGSTGL------------SKLIPRT---HDDYIYSLKRSVEVCWLDHSTVYLAAL 230
Query: 319 DMGWVVGHSY--ICYG---PLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
M H+Y G L AG V+ P P + +I KV P
Sbjct: 231 PM----AHNYPLSSPGVLGVLYAGGRVVLSPS-----PSPDDAFPLIEREKVTITALVPP 281
Query: 374 ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGH 433
V D+ + SL+ L V G E + F T+ + E
Sbjct: 282 LAMVWM----DAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEG-- 335
Query: 434 SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493
+ L D +T G+ + P
Sbjct: 336 LVNYTRLD---DPEEIIVNT--------------------QGKP----MSPY-------- 360
Query: 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553
E R+ + + +P E G ++ + P T+ YKA + FT+
Sbjct: 361 ---------DESRVWDDHDRDVKPGETGHLLTR---GPYTIRGYYKAEEHNAAS-FTE-D 406
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y T D +GYI V R D IN G +++ +E+ +L+HP V D A++ +P+
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQ 466
Query: 614 TKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRS 673
GE C++I R +
Sbjct: 467 FLGERS-CVFIIP-------------------RDEAP----------------------- 483
Query: 674 DEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNK 724
ELK +RE +AA+K+ V P+T GK ++K++ + K
Sbjct: 484 KAA---ELKAFLRER--GLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 196 bits (502), Expect = 6e-55
Identities = 113/655 (17%), Positives = 213/655 (32%), Gaps = 162/655 (24%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ V+ +A+I R+++Y EL + LA LA G+ GD L+ +P
Sbjct: 36 LTVGVQS-HPHSLAIICGE------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLP 88
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFA--ARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+ E + A ++ G + V+ ++ EL A ++ +PK++I + ++V
Sbjct: 89 NVAEFYIVFFALLKAGVV--VLNALYSHRQYELNAFIKQIQPKLLIGS----RQHEVFSN 142
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
++ +++ + + + T + W + A+ A++
Sbjct: 143 NQFIDSLHDVNLSP-------EIILMLNHQATDFGLLDWIETPAETFVDF-SSTPADEVA 194
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTAS 318
+ + G+TG PK I R H + I + + A
Sbjct: 195 FFQLSGGSTGT------------PKLIPR---THNDYDYSVRASAEICGLNSNTRLLCAL 239
Query: 319 DMGWVVGHSY--ICYG---PLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
H++ G L AG VM P+P + +I H+VN P+
Sbjct: 240 PA----PHNFMLSSPGALGVLHAGGCVVMAP-----NPEPLNCFSIIQRHQVNMASLVPS 290
Query: 374 ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGH 433
A+ + + + SL+ L V G + N + + E
Sbjct: 291 AVIMW----LEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEG-- 344
Query: 434 SITAHCLGYQHDTVPPKYST-GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVP 492
+ L D+ ++T G P D
Sbjct: 345 LVNYTRL---DDSDEQIFTTQGRPISSDD------------------------------- 370
Query: 493 KGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF 552
E++I+ E E+G + + P T Y++P+ ++ F +
Sbjct: 371 -----------EIKIVDEQYREVPEGEIGMLATR---GPYTFCGYYQSPEHNSQV-FDE- 414
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
YY + D +G + V R D IN G ++++ +E ++L HP+V A++ + +
Sbjct: 415 DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVD 474
Query: 613 PTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTR 672
GE C +I R L
Sbjct: 475 EQFGEKS-CAFIVS-------------------RNPELKA-------------------- 494
Query: 673 SDEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNK 724
+ + L E IA +KL + LP T GK +K + +
Sbjct: 495 --VVLRRHLME------LGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 190 bits (486), Expect = 5e-53
Identities = 100/559 (17%), Positives = 173/559 (30%), Gaps = 147/559 (26%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ + + A + S + ++TYA++ + A L A+G++ GDRV + MP
Sbjct: 22 LRQRATV-SPRLQAYVEPS----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMP 76
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
E +LGA+ + AA E+ L + KV+I +
Sbjct: 77 NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA---------PSAP 127
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
+++ Q G D L + + V +D L+I
Sbjct: 128 VIDAIRA------------QADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFI 175
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTASDM 320
+YTSGTTG P+G V H + + A + + ++ D M
Sbjct: 176 MYTSGTTGHPKGV---------------VHTHESVHSAASSWASTIDVRYRDRLLLPLPM 220
Query: 321 ----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376
G+T + D ++ + +I +V P L
Sbjct: 221 FHVAALTTV-----IFSAMRGVTLISM-----PQFDATKVWSLIVEERVCIGGAVPAILN 270
Query: 377 VIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGHSI 435
+R+ + A+ RY G K +A N+ ++ + TE+
Sbjct: 271 FMRQVPE----FAELDAPDFRYFITGGAPMPEALIKIYAA--KNIEVVQGYALTESC-GG 323
Query: 436 TAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495
L S G
Sbjct: 324 GTLLLSEDALRKA--GSAGRATMF------------------------------------ 345
Query: 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555
+V + +DG E E G +V+K + Y
Sbjct: 346 -------TDVAVRGDDGVIREHGE-GEVVIK---SDILL------------------KEY 376
Query: 556 YD---------------TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHP 600
++ T D G D+ GY+Y+ R D+I G + + +E V++ P
Sbjct: 377 WNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVP 436
Query: 601 DVGDTAVIGVPEPTKGEIP 619
V + AVIG+P+ GEI
Sbjct: 437 GVSEVAVIGLPDEKWGEIA 455
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 186 bits (476), Expect = 1e-51
Identities = 101/560 (18%), Positives = 166/560 (29%), Gaps = 152/560 (27%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
R+ + A + D ++T+ + + LA L GV GDRV I
Sbjct: 12 YRRNAAL-FPDRTAFMVDG------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQ 64
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
E I + A +GAI V A E+ L P V++A + Y+
Sbjct: 65 NCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGT---------DYRD 115
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
I+ L ++ + + + LA A D I
Sbjct: 116 IVAGVLPSLGGV--------KKAYAIGDGSGPFAPF--KDLASDTPFSAPEFGAADGFVI 165
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTASDM 320
++T+ G+P+G + + ++ + + + DV +
Sbjct: 166 IHTAAVGGRPRGA---------------LISQGNLLIAQSSLVDAWRLTEADVNLGMLPL 210
Query: 321 ----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376
G + AG SV+ DP+Q R I HKV + L
Sbjct: 211 FHVTGLGLM-----LTLQQAGGASVIA-----AKFDPAQAARDIEAHKVTVMAEFAPMLG 260
Query: 377 VIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSIT 436
I + A SLR + E + N T + Q+ET S
Sbjct: 261 NILDQ------AAPAQLASLRAVTGLDTPETIER--FEATCPNATFWATFGQSET--SGL 310
Query: 437 AHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
+ Y+ S G P
Sbjct: 311 STFAPYRDRPK----SAGRPLFW------------------------------------- 329
Query: 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556
V ++ + P E+G IV++ P F GY+
Sbjct: 330 ------RTVAVVDAEDRPLPPGEVGEIVLR-------------GPTVF--------KGYW 362
Query: 557 D---------------TMDAGYYDENGYIYVTARDD--DVINVAGHRLSTSALEDVVLSH 599
+ T D G +D +GY++ R ++I G + + +E + H
Sbjct: 363 NNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQH 422
Query: 600 PDVGDTAVIGVPEPTKGEIP 619
P + D VIGVP+P E
Sbjct: 423 PAIADAVVIGVPDPQWSEAI 442
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 179 bits (457), Expect = 3e-49
Identities = 80/559 (14%), Positives = 158/559 (28%), Gaps = 143/559 (25%)
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
+ + ++ +A+ TY L + SLLA L RV +Y
Sbjct: 5 FWLYKQAQQ-NGHHIAITDGQ------ESYTYQNLYCEASLLAKRL---KAYQQSRVGLY 54
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+ ++I+ + A +++ E+ ++ ++I +
Sbjct: 55 IDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS 114
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQR--LSHRCVPVEAND 258
+ A + + + + YD + + + + +D
Sbjct: 115 LDDIEFAGRDITTNG----------LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDD 164
Query: 259 PLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318
I++TSGTTG K + + H A+ A +D W +
Sbjct: 165 IASIMFTSGTTGP------------QKAVPQTFRNHYAS-AIGCKESLGFDRDTNWLSVL 211
Query: 319 DM----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA 374
+ G V + G T + + Q +I N ++ + P
Sbjct: 212 PIYHISGLSV-----LLRAVIEGFTVRIV-----DKFNAEQILTMIKNERITHISLVPQT 261
Query: 375 LRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHS 434
L + ++ + +L+ + + G A + +N+ + N + TET S
Sbjct: 262 LNWLMQQ-------GLHEPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETC-S 312
Query: 435 ITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKG 494
P + G+P
Sbjct: 313 QFLTATPEMLHARP--DTVGMPSAN----------------------------------- 335
Query: 495 QNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554
V+V+I + G +++K M G
Sbjct: 336 --------VDVKIKNPNK-----EGHGELMIK---GANVM------------------NG 361
Query: 555 YYD--------------TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHP 600
Y T D D GY+ + R D+I G + +E V P
Sbjct: 362 YLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFP 421
Query: 601 DVGDTAVIGVPEPTKGEIP 619
+ D +G P+ T G++P
Sbjct: 422 GISDAVCVGHPDDTWGQVP 440
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 178 bits (453), Expect = 1e-48
Identities = 98/567 (17%), Positives = 169/567 (29%), Gaps = 156/567 (27%)
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
+ R R AL + ++T+AEL+ +V +A L A G+ RV +
Sbjct: 6 EMLRRAATR-APDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVV 60
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
P + ++++LA RLGA+ +++ + EL ++ + + A
Sbjct: 61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA------------ 108
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
+++ + G + + + E P
Sbjct: 109 -----VGRQVADAIFQ-------SGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPA 156
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKG-ILRPVGGH--IATLAWTMSVIYNM--GQDDVWW 315
+I YTSGTTG PK I+ + MS + G+ +V
Sbjct: 157 FIFYTSGTTGL------------PKAAIIP----QRAAESRVLFMSTQVGLRHGRHNVVL 200
Query: 316 TASDM----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371
+ G+ LA T V+ E P +++ +V LF
Sbjct: 201 GLMPLYHVVGFFAV----LVAALALDGTYVVVEE-----FRPVDALQLVQQEQVTSLFAT 251
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTET 431
PT L + + G+ DSLR++ AG + +N + TE
Sbjct: 252 PTHLDALAAAAAHA--GSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEA 309
Query: 432 GHSITAHCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKN 490
+S+ PK + P
Sbjct: 310 MNSLYMR---------QPKTGTEMAPGFF------------------------------- 329
Query: 491 VPKGQNATHFTSVEVRIIRNDGS---ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
EVRI+R G E G ++V
Sbjct: 330 ------------SEVRIVRIGGGVDEIVANGEEGELIVA--ASDSAF------------- 362
Query: 548 YFTKFPGYYD---------------TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSAL 592
GY + T D + G + + R DD+I G + S +
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 593 EDVVLSHPDVGDTAVIGVPEPTKGEIP 619
E V+ + P V + VIG+ + G+
Sbjct: 418 ERVLGTAPGVTEVVVIGLADQRWGQSV 444
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 175 bits (445), Expect = 2e-47
Identities = 109/533 (20%), Positives = 171/533 (32%), Gaps = 139/533 (26%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
K++YAEL + +A L A G+ GDRV EA+V LATVR G ++ +
Sbjct: 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTA 86
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ EL + A+PK+++ + + +
Sbjct: 87 YTLHELDYFITDAEPKIVVCDP---------SKRDGIAAIAA------------KVGATV 125
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
E G L D A + + A+D ILYTSGTTG+ KG
Sbjct: 126 ETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGR------------SKG- 172
Query: 288 LRPVGGHIATL--------AWTMSVIYNMGQDDVWWTASDM----GWVVGHSYICYGPLA 335
A L + T+ + DDV A + G V L
Sbjct: 173 --------AMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA----SNVTLF 220
Query: 336 AGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395
A + + DP + ++ + L PT + + + + +T
Sbjct: 221 ARGSMIFLPK-----FDPDKILDLM--ARATVLMGVPTFYTRLLQSPRL----TKETTGH 269
Query: 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGL 455
+R +T +L + TET + + Y D VP + G
Sbjct: 270 MRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNP---YDGDRVP--GAVGP 324
Query: 456 PFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSE 514
PG V R+ + G E
Sbjct: 325 ALPG-------------------------------------------VSARVTDPETGKE 341
Query: 515 CEPHELGRIVVKLP--------LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566
++G I VK P +P T S G++ T D G DE
Sbjct: 342 LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDD-------------GFFITGDLGKIDE 388
Query: 567 NGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
GY+++ R D++ G + +E + + P V ++AVIGVP GE
Sbjct: 389 RGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGV 441
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 168 bits (427), Expect = 1e-44
Identities = 89/572 (15%), Positives = 178/572 (31%), Gaps = 147/572 (25%)
Query: 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVL 138
+ A+ R+ +A +TYAE E LA ++ G++ R++
Sbjct: 26 LHKAMKRYALVP--GTIAFTDAH----IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIV 79
Query: 139 IYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198
+ + + +L + +G + + REL + ++P V+ + G++
Sbjct: 80 VCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQ----- 134
Query: 199 RYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVE--- 255
ILN ++ + II + Y + + VP
Sbjct: 135 ---KILNVQKKLPIIQK---IIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 188
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM----SVIYNMGQD 311
I+ +SG+TG P KG+ +
Sbjct: 189 DKTIALIMNSSGSTGLP------------KGV--------------ALPHRTACVRFSHA 222
Query: 312 DVWWTASDMGW---VVG-----HSY---ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVI 360
+ + ++ H + G L G V+ + + R +
Sbjct: 223 RDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-----YRFEEELFLRSL 277
Query: 361 HNHKVNGLFTAPT-ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN 419
++K+ PT + D +Y +L + G E K F+
Sbjct: 278 QDYKIQSALLVPTLFSFFAKSTLID-----KYDLSNLHEIASGGAPLSKEVGEAVAKRFH 332
Query: 420 VTMLNHWWQ----TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475
+ + Q TET +I G + G P ++ K V++
Sbjct: 333 LPGI---RQGYGLTETTSAILITPEGDDKPG-----AVGKVVPFFEAKVVDL-------- 376
Query: 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP------- 528
+ G ++ G + V+ P
Sbjct: 377 ----------------------------------DTGKTLGVNQRGELCVRGPMIMSGYV 402
Query: 529 -LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRL 587
P T + + K G+ + D Y+DE+ + ++ R +I G+++
Sbjct: 403 NNPEATNALIDKD-------------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449
Query: 588 STSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
+ + LE ++L HP++ D V G+P+ GE+P
Sbjct: 450 APAELESILLQHPNIFDAGVAGLPDDDAGELP 481
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 167 bits (424), Expect = 1e-44
Identities = 103/554 (18%), Positives = 168/554 (30%), Gaps = 148/554 (26%)
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
A+ A + AL R +TYAEL AG + RV ++
Sbjct: 27 ALSPAPTGAPADRPALRFGE------RSLTYAELAAAAGATAG-----RIGGAGRVAVWA 75
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201
E V+++A + G + +EL L + P +++
Sbjct: 76 TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVL--------------- 120
Query: 202 TILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL--WDDALAQRLSHRCVPVEANDP 259
+AEL P L D + R + + DP
Sbjct: 121 -----------------------APPDAELPPALGALERVDVDVRARGAVPEDGADDGDP 157
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319
++YTSGTTG P KG + P +AT ++ + +DV
Sbjct: 158 ALVVYTSGTTGPP------------KGAVIPRRA-LATTLDALADAWQWTGEDVLVQGLP 204
Query: 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA-LRVI 378
+ V G GPL G + R ++ LF PT R+
Sbjct: 205 LFHVHGLVLGILGPLRRGGSVRHLGR-----FSTEGAARELN-DGATMLFGVPTMYHRIA 258
Query: 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAH 438
D L + R L + ++ + TET +
Sbjct: 259 ETLPADPELAKALA--GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTET--LMNTS 314
Query: 439 CLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
P+ + G+P PG
Sbjct: 315 VR----ADGEPRAGTVGVPLPG-------------------------------------- 332
Query: 498 THFTSVEVRIIRNDGSECEPH---ELGRIVVKLP--------LPPGTMSTLYKAPQRFMK 546
VE+R++ DG+ +G I V+ P P T + +
Sbjct: 333 -----VELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED------ 381
Query: 547 IYFTKFPGYYDTMDAGYYDENGYIYVTARDD-DVINVAGHRLSTSALEDVVLSHPDVGDT 605
G++ T D D +GY+ + R D+I G+++ +E+ +L HP+V +
Sbjct: 382 -------GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREA 434
Query: 606 AVIGVPEPTKGEIP 619
AV G P+P GE
Sbjct: 435 AVTGEPDPDLGERI 448
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 166 bits (422), Expect = 4e-44
Identities = 91/572 (15%), Positives = 180/572 (31%), Gaps = 148/572 (25%)
Query: 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVL 138
++R+ + G +A + + +YAE E+ L +L G+ R+
Sbjct: 29 LRKYMERYAKLG---AIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81
Query: 139 IYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198
+ E + ++A + +G + + REL L +KP ++ ++ G++
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLD----- 136
Query: 199 RYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVE--- 255
+ + + I+ + V+ + + + VE
Sbjct: 137 ----KVITVQKTVTTIKTIVILDSK--VDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDR 190
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM----SVIYNMGQD 311
I+ +SG+TG P KG+ +++
Sbjct: 191 KEQVALIMNSSGSTGLP------------KGV--------------QLTHENIVTRFSHA 224
Query: 312 DVWWTASDMGW---VVG-----HSY---ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVI 360
+ + V+ H + G L G VM D + + +
Sbjct: 225 RDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLT-----KFDEETFLKTL 279
Query: 361 HNHKVNGLFTAPT-ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN 419
++K + PT + + E + +Y +L + G E + FN
Sbjct: 280 QDYKCTSVILVPTLFAILNKSELLN-----KYDLSNLVEIASGGAPLSKEVGEAVARRFN 334
Query: 420 VTMLNHWWQ----TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475
+ + Q TET + + ++G P + K +++
Sbjct: 335 LPGVR---QGYGLTET--TSAIII---TPEGDDKPGASGKVVPLFKAKVIDL-------- 378
Query: 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPL------ 529
+ P+ G + VK P+
Sbjct: 379 ----------------------------------DTKKSLGPNRRGEVCVKGPMLMKGYV 404
Query: 530 --PPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRL 587
P T + + G+ T D GYYDE + ++ R +I G+++
Sbjct: 405 NNPEATKELIDEE-------------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
Query: 588 STSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
+ LE V+L HP + D V GVP+P GE+P
Sbjct: 452 PPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 165 bits (421), Expect = 6e-44
Identities = 103/571 (18%), Positives = 171/571 (29%), Gaps = 148/571 (25%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSI--RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
ID E+ +K A+I P S + + E+ E LA ++ GV G+ V +
Sbjct: 25 IDAAAEK-FGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVC 83
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+P + ++++ A R+ A + + + EL L ++ ++ S E
Sbjct: 84 IPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYE------- 136
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVE---AN 257
LE + VE + G + + S V+
Sbjct: 137 --NFKPVLEKTG-------------VERVFVVGGEVNSLSEVMDSG-SEDFENVKVNPEE 180
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM----SVIYNMGQDDV 313
D I YT GTTG P+G M ++ N Q V
Sbjct: 181 DVALIPYTGGTTGMPKGV--------------------------MLTHFNLAANALQLAV 214
Query: 314 WWTASDMGWVVG-----HSY---ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKV 365
S M +VG HS + + G V+ + I +K
Sbjct: 215 ATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVM-----GMFNQEMLAENIEKYKG 269
Query: 366 NGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH 425
+ P AL V+ + S Y L+ K N
Sbjct: 270 TFSWAVPPALNVLVNTLESSN--KTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNP 327
Query: 426 WWQ-------TETGHSITAHCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRA 477
+ TE K + G+P
Sbjct: 328 RLRHNQIWGMTEA--CPMVTT---NPPLRLDKSTTQGVPMSD------------------ 364
Query: 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLP-------- 528
+E+++I DG E E G IV++ P
Sbjct: 365 -------------------------IELKVISLEDGRELGVGESGEIVIRGPNIFKGYWK 399
Query: 529 LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLS 588
+ + ++ T D G+ DE G+++ R +VI G+ ++
Sbjct: 400 REKENQECWWYDEKG---------RKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIA 450
Query: 589 TSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
LE +++ H V D AVIG P+ GE+P
Sbjct: 451 PFELEALLMKHEAVMDVAVIGKPDEEAGEVP 481
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 164 bits (417), Expect = 2e-43
Identities = 99/550 (18%), Positives = 195/550 (35%), Gaps = 135/550 (24%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
K LI+ + + TYA+++ +A L IG+ GD +++++P PE +++ L
Sbjct: 38 KPCLINGA----NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLG 93
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
GAI + EL + ++ K++I +C E + + S
Sbjct: 94 ASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYE---------KVKDFARESDV 144
Query: 214 KPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH-RCVPVEANDPLYILYTSGTTGKP 272
K ++ CV+ A P + + + + V + +D + + Y+SGTTG
Sbjct: 145 K----VM----CVDSA---PDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGL- 192
Query: 273 QGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVG---- 325
PKG++ + + +A + +DV ++
Sbjct: 193 -----------PKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDV---------ILCVLPM 232
Query: 326 -HSY----ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT-ALRVIR 379
H Y I L G ++ + +I +KV+ P + + +
Sbjct: 233 FHIYALNSIMLCGLRVGAPILIM-----PKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK 287
Query: 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAH 438
D D ++ SLR + G E ++ F + + TE G + A
Sbjct: 288 SPDLD-----KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAG-PVLAM 341
Query: 439 CLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
CL + + K + G + K V+
Sbjct: 342 CLAFAKEPFDIKPGACGTVVRNAEMKIVDP------------------------------ 371
Query: 498 THFTSVEVRIIRNDGSECEPHELGRIVVKLP--------LPPGTMSTLYKAPQRFMKIYF 549
G+ ++ G I ++ P T T+ K
Sbjct: 372 ------------ETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKE--------- 410
Query: 550 TKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIG 609
G+ T D GY D++ +++ R ++I G +++ + LE ++++HP++ D AV+G
Sbjct: 411 ----GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVG 466
Query: 610 VPEPTKGEIP 619
+ + GE+P
Sbjct: 467 LKDEDAGEVP 476
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 163 bits (415), Expect = 6e-42
Identities = 97/540 (17%), Positives = 180/540 (33%), Gaps = 107/540 (19%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
K LI + P TY+++ +A + +GV+ D V++ +P PE ++S LA
Sbjct: 77 KPCLI-NGPTGHVY---TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLA 132
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
GA + F E+ + + + K+II + V+ +
Sbjct: 133 ASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVD---------KIKPLQNDDGV 183
Query: 214 KPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQ 273
I V E + L V + +D + + Y+SGTTG
Sbjct: 184 V--IVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGL-- 239
Query: 274 GCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYIC 330
PKG++ + + +A + DDV M + + I
Sbjct: 240 ----------PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIM 289
Query: 331 YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT-ALRVIRREDKDSTLGA 389
L G ++ + + +I KV P L + + + +
Sbjct: 290 LCGLRVGAAILIM-----PKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE----- 339
Query: 390 QYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVP 448
+Y S+R + E ++ F N + + TE G + A LG+ + P
Sbjct: 340 KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG-PVLAMSLGFAKEPFP 398
Query: 449 PKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRI 507
K + G + K V+
Sbjct: 399 VKSGACGTVVRNAEMKIVDP---------------------------------------- 418
Query: 508 IRNDGSECEPHELGRIVVKLPL--------PPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559
+ G ++ G I ++ P T T+ K G+ T
Sbjct: 419 --DTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKD-------------GWLHTG 463
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
D G D++ +++ R ++I G +++ + LE +++ HPD+ D AV+ + E GE+P
Sbjct: 464 DIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVP 523
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 128 bits (325), Expect = 1e-31
Identities = 108/564 (19%), Positives = 186/564 (32%), Gaps = 125/564 (22%)
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
+K + T + + TYAE+ ++ L G L A+GV GDRV
Sbjct: 25 ERAAALFGRKEVVSRL--HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 82
Query: 145 PEAIVSMLATVRLGAI-HSV---VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+ + A +GA+ H+ + +E+ L HA+ KV++ +PN
Sbjct: 83 FRHLEAYFAVPGMGAVLHTANPRLS----PKEIAYILNHAEDKVLL-----FDPN----L 129
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
++ + ++ +E +++AL + VP E
Sbjct: 130 LPLVEAIRGELKTVQHFVVM------DEKAPEGYLA--YEEALGEEADPVRVP-E-RAAC 179
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVW-WT 316
+ YT+GTTG P KG++ R + +LA ++ + + DV
Sbjct: 180 GMAYTTGTTGLP------------KGVVYSHR--ALVLHSLAASLVDGTALSEKDVVLPV 225
Query: 317 ASDM----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAP 372
M W Y G V+ P DP+ + V P
Sbjct: 226 VP-MFHVNAW--CLPYAA---TLVGAKQVL----PGPRLDPASLVELFDGEGVTFTAGVP 275
Query: 373 TALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETG 432
T + + + + +LR L V G E+ V + + TET
Sbjct: 276 TVWLALADYLEST----GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETS 330
Query: 433 HSITAHCLGYQHDTVPP------KYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486
+ + + +++ K TGLP P
Sbjct: 331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPL--------------------------- 363
Query: 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPH---ELGRIVVKLPLPPGTMSTLYKAPQR 543
V +R+ +G P LG + +K P Y +
Sbjct: 364 ----------------VRLRVADEEGRPV-PKDGKALGEVQLK---GPWITGGYYGNEEA 403
Query: 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
G++ T D +DE GY+ + R D+I G +S+ LE+ ++ HP V
Sbjct: 404 TRSALTPD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVK 461
Query: 604 DTAVIGVPEPTKGEIPFCLYIKKR 627
+ AV+ +P P E P + R
Sbjct: 462 EAAVVAIPHPKWQERP-LAVVVPR 484
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 104 bits (262), Expect = 1e-23
Identities = 88/552 (15%), Positives = 152/552 (27%), Gaps = 148/552 (26%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI------- 160
++ Y L+ + A L ++ + GDRV + E + + A G +
Sbjct: 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIP 107
Query: 161 HSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCII 220
V + +L L +P II + ++N A
Sbjct: 108 MGVGQRDSWSAKLQGLLASCQPAAIITGD---------EWLPLVNAAT------------ 146
Query: 221 FQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRS 280
+ W AL + ND Y+ YTSG+T
Sbjct: 147 ------HDNPELHVLSHAWFKALPEA-DVALQRPVPNDIAYLQYTSGSTR---------- 189
Query: 281 EDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS------DMGWVVGHSYICYGPL 334
P+G++ +A L + D S DMG V P+
Sbjct: 190 --FPRGVIITHREVMANLRAISHDGIKLRPGDR--CVSWLPFYHDMGLVGFLL----TPV 241
Query: 335 AAGITSV-MYEGKPDRTP-----DPSQYYRVIHNHKVNGLFTAPT-----ALRVIRREDK 383
A ++ + P Q+ ++I ++ AP R + +D
Sbjct: 242 ATQLSVDYL-------RTQDFAMRPLQWLKLISKNRGTVSV-APPFGYELCQRRVNEKD- 292
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ 443
A+ R + E E F +
Sbjct: 293 ----LAELDLSCWRVAGIGAEPISAEQL----HQFAECF--------------RQV-NFD 329
Query: 444 HDTVPPKY---------STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKG 494
+ T P Y S G V+ +L + G+A +
Sbjct: 330 NKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEY-QGKAVAPG----------AET 378
Query: 495 QNATHFTSV-------EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTL--YKAPQRFM 545
+ + F + + I G +G I + G +
Sbjct: 379 RAVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGHICIS-----GPSLMSGYFGDQV--- 430
Query: 546 KIYFTK--FP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV 602
G+ DT D GY + GY+YVT R D+I + G + +E + P++
Sbjct: 431 ---SQDEIAATGWLDTGDLGYLLD-GYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEI 486
Query: 603 --GDTAVIGVPE 612
GD +
Sbjct: 487 HSGDAIAFVTAQ 498
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 103 bits (260), Expect = 2e-23
Identities = 94/559 (16%), Positives = 164/559 (29%), Gaps = 147/559 (26%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI----HSVVF 165
+TY +L + +A +L A G GDRVL+ I + L + G I +
Sbjct: 41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100
Query: 166 GGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC 225
+ + ++KP +++ + D+ F
Sbjct: 101 EKLLDK-AQRIVTNSKPVIVLMIA--------------------------DHIKKFTADE 133
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEA--NDPLYILYTSGTTGKPQGCSELRSEDQ 283
+ + +++ S P ND ++ YTSG+T
Sbjct: 134 LNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTM------------H 181
Query: 284 PKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTAS------DMGWVVGHSYICYGPLA 335
PKG+ + H + + ++M + + S DMG + P+
Sbjct: 182 PKGV---MVSHHNLLDNLNKIFTSFHMNDETI--IFSWLPPHHDMGLIGCIL----TPIY 232
Query: 336 AGITSVMYEGKPDRTP-----DPSQYYRVIHNHKVNGLFTAPT-----ALRVIRREDKDS 385
GI ++M +P +P + + I +K +P ++ IR E
Sbjct: 233 GGIQAIMM------SPFSFLQNPLSWLKHITKYKATISG-SPNFAYDYCVKRIREEK--- 282
Query: 386 TLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHD 445
S F E ET + F G++ +
Sbjct: 283 --KEGLDLSSWVTAFNGAEPVREETM----EHFYQAF--------------KEF-GFRKE 321
Query: 446 TVPPKY---------STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
P Y + G P Y + D R H
Sbjct: 322 AFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQ--DHRVHFAD----------DNSPG 369
Query: 497 ATHFTSV-----EVRIIRND-GSECEPHELGRIVVK--------LPLPPGTMSTLYKAPQ 542
+ S EV+II D C+ ++G I V+ P T
Sbjct: 370 SYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAF----- 424
Query: 543 RFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVL-SHPD 601
+ Y T D G+ E +YVT R D+I + G +E ++ S
Sbjct: 425 AGKIKDDERSAIYLRTGDLGFLHE-NELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLH 483
Query: 602 V--GDTAVIGVPEPTKGEI 618
G A + E + ++
Sbjct: 484 HVLGKCAAFVIQEEHEYKL 502
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 100 bits (252), Expect = 6e-22
Identities = 56/355 (15%), Positives = 101/355 (28%), Gaps = 95/355 (26%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
AL + + ++Y EL E+ + +A L G G V +Y E ++ +L
Sbjct: 481 PALTYSG------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGV 534
Query: 155 VRLGAIHSVVFGGF--------AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206
++ G + R + L + ++
Sbjct: 535 LKAG-------AAYLPVDPKLPEDR-ISYMLADSAAACLLT------------------- 567
Query: 207 ALEISSCKPDYCIIFQRRCVEEAELTPGY----DILWDDALAQRLSHRCVPVEANDPLYI 262
+ E+A P I ++ S ++ NDP YI
Sbjct: 568 ---------------HQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYI 612
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW-WTAS--- 318
+YTSGTTGK PKG + I L + D + ++
Sbjct: 613 MYTSGTTGK------------PKGNITTHAN-IQGLVKHVDY-MAFSDQDTFLSVSNYAF 658
Query: 319 DM-GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
D + Y + ++ D + +I VN +F +
Sbjct: 659 DAFTFDF------YASMLNAARLIIA--DEHTLLDTERLTDLILQENVNVMFATTALFNL 710
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTET 431
+ +D LR + GE + ++N + TE
Sbjct: 711 LTDAGED-------WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEG 758
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 97.2 bits (243), Expect = 3e-21
Identities = 51/355 (14%), Positives = 86/355 (24%), Gaps = 102/355 (28%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
A+ V Y +L + L+ L G + +Y E+I +LA
Sbjct: 44 EAIRDRF------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAI 97
Query: 155 VRLGAIHSVVFGGF--------AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206
+ G + AA ++I+
Sbjct: 98 LLSG-------HHYLYIDLKQPAAW-NAELCRQVDCRLILD------------------- 130
Query: 207 ALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTS 266
A P + A S A+ YI ++S
Sbjct: 131 ---------------CSTTPTPANGLP--CVPVRHLPAAPASVARPCFAADQIAYINFSS 173
Query: 267 GTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
GTTG+ PK I H I L ++V
Sbjct: 174 GTTGR------------PKAIACT---HAGITRLCL-GQSFLAFAPQMR--------FLV 209
Query: 325 GHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
+G L G V+ DP ++I + + +
Sbjct: 210 NSPLSFDAATLEIWGALLNGGCCVLN---DLGPLDPGVLRQLIGERGADSAWLTASLFNT 266
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTET 431
+ D D LR L G+ + + + ++N + TE
Sbjct: 267 LVDLDPD-------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN 314
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 94.1 bits (235), Expect = 3e-20
Identities = 56/364 (15%), Positives = 103/364 (28%), Gaps = 109/364 (29%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
+ TY +L+ +A + ++ + A VL++ + + + +A
Sbjct: 21 PVYDCLG------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVAL 74
Query: 155 V----------------RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198
R+ AI +E AKP +IIA
Sbjct: 75 TKSGHAYIPVDVHSAPERILAI----------------IEIAKPSLIIA----------- 107
Query: 199 RYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG--YDILWDDALAQRLSHRCVPVEA 256
E + LA+ R V+
Sbjct: 108 -----------------------IEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKG 144
Query: 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI-YNMGQDDVWW 315
+D YI++TSGTTG+ PKG+ ++ W + +++ +
Sbjct: 145 DDNYYIIFTSGTTGQ------------PKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ-- 190
Query: 316 TASDMGWVVGHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGL 368
+ Y LA G T + D Q + I V
Sbjct: 191 ------MLAQPPYSFDLSVMYWAPTLALGGTLFAL--PKELVADFKQLFTTIAQLPVGIW 242
Query: 369 FTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWW 427
+ P+ + D Q +L + + GE T + E+ + ++N +
Sbjct: 243 TSTPSFADMAMLSDDFC----QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYG 298
Query: 428 QTET 431
TE
Sbjct: 299 PTEA 302
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 91.4 bits (228), Expect = 2e-19
Identities = 54/361 (14%), Positives = 107/361 (29%), Gaps = 103/361 (28%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
A + K+TY +L+E LA +++ +++Y + PE I++ L
Sbjct: 18 TAFVWRD------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71
Query: 155 V----------------RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198
V R+ I E++ K++++A+ + V
Sbjct: 72 VKAGHAYIPVDLSIPADRVQRI----------------AENSGAKLLLSATAVTVTDLPV 115
Query: 199 RYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEAND 258
R + N + V+ ++
Sbjct: 116 RIVSEDNLKD------------------------------IFFTHKGNTPNPEHAVKGDE 145
Query: 259 PLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318
YI+YTSG+TG PKG+ ++ W +N+ V
Sbjct: 146 NFYIIYTSGSTGN------------PKGVQITYNCLVSFTKW-AVEDFNLQTGQV----- 187
Query: 319 DMGWVVGHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371
++ + Y L G T D P + + + +
Sbjct: 188 ---FLNQAPFSFDLSVMDIYPSLVTGGTLWAI--DKDMIARPKDLFASLEQSDIQVWTST 242
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTE 430
P+ + E S + +++ GE +E + E+ T++N + TE
Sbjct: 243 PSFAEMCLMEASFS----ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE 298
Query: 431 T 431
Sbjct: 299 A 299
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 89.5 bits (223), Expect = 8e-19
Identities = 51/364 (14%), Positives = 98/364 (26%), Gaps = 110/364 (30%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV-SAGDRVLIYMPLIPEAIVSMLA 153
A + +TY EL EQ A ++ +L+Y + P IVS L
Sbjct: 18 DAFRSQG------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71
Query: 154 TV----------------RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKV 197
+V R+ I +E + +++I
Sbjct: 72 SVKAGHPYIPVDLSIPSERIAKI----------------IESSGAELLIH---------- 105
Query: 198 VRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH--RCVPVE 255
+A + ++ L + V+
Sbjct: 106 ------------------------AAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVK 141
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315
++ YI+YTSG+TG PKG+ + W + + + +
Sbjct: 142 EHETFYIIYTSGSTGN------------PKGVQISAANLQSFTDW-ICADFPVSGGKI-- 186
Query: 316 TASDMGWVVGHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGL 368
++ + Y L +G T D P + + +N
Sbjct: 187 ------FLNQAPFSFDLSVMDLYPCLQSGGTLHC--VTKDAVNKPKVLFEELKKSGLNVW 238
Query: 369 FTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWW 427
+ P+ +++ + +Q GE K E+ + N +
Sbjct: 239 TSTPSFVQMCLMDPGF----SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYG 294
Query: 428 QTET 431
TE
Sbjct: 295 PTEA 298
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 85.2 bits (212), Expect = 2e-17
Identities = 64/373 (17%), Positives = 115/373 (30%), Gaps = 99/373 (26%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
VA++ ++ ++TY EL + + LA G+ V I M + + +LA
Sbjct: 56 VAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAV 109
Query: 155 VRLGAIHSVVFGGF---------AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILN 205
L A GG R + L+ ++ ++++ + L
Sbjct: 110 --LKA------GGAYVPIDIEYPKER-IQYILDDSQARMLLT-------------QKHLV 147
Query: 206 EALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYT 265
+ F + D + ++ VP ++ D Y++YT
Sbjct: 148 HLIHNIQ--------FNGQVE---------IFEEDTIKIREGTNLHVPSKSTDLAYVIYT 190
Query: 266 SGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVG 325
SGTTG PKG + G + N+ + D
Sbjct: 191 SGTTGN------------PKGTMLEHKGISNLKVF-FENSLNVTEKDR--------IGQF 229
Query: 326 HSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378
S + L G + + D D ++ + I+ ++ + PT + +
Sbjct: 230 ASISFDASVWEMFMALLTGASLYII--LKDTINDFVKFEQYINQKEITVITLPPTYVVHL 287
Query: 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTE-TGHSIT 436
E S++ L AG W EK VT +N + TE T + T
Sbjct: 288 DPER----------ILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATT 334
Query: 437 AHCLGYQHDTVPP 449
P
Sbjct: 335 WVATKETIGHSVP 347
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 83.8 bits (208), Expect = 6e-17
Identities = 52/377 (13%), Positives = 103/377 (27%), Gaps = 88/377 (23%)
Query: 95 VALIHDSPVTKSI----RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVS 150
A+ + S TY +L E + +A + + G + + + A
Sbjct: 37 KAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95
Query: 151 MLATVRLGAIHSVVFGGF--------AARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
++ ++ G + R L ++ +
Sbjct: 96 IVGIMKSG-------NTYVPIEAGLPNDR-KSFLLRDSRAAMAFVCDN------------ 135
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
+ +E+ + + ++ + ++ Q S N Y+
Sbjct: 136 -NFDGVELPP---------ETKVLDTKNQS-----FIENLSTQDTSDILNNYPENLDAYL 180
Query: 263 LYTSGTTGKPQGCS-ELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
LYTSG+TG P+G + + +G
Sbjct: 181 LYTSGSTGTPKGVRVSRH------NLSSFSDAWGKLIGNVAPKSLELGGVGK-------- 226
Query: 322 WVVGHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA 374
++ S + G+ +V +R R V P+
Sbjct: 227 FLCLASRAFDVHIGEMFLAWRFGLCAVT----GERLSMLDDLPRTFRELGVTHAGIVPSL 282
Query: 375 LRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGH 433
L +D+ L YL V GE T + W+ V ++N + TE
Sbjct: 283 LDQTGLVPEDAP--------HLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEV-- 331
Query: 434 SI--TAHCLGYQHDTVP 448
+I +A + DT
Sbjct: 332 TIGCSAGRILPDSDTRC 348
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 73.2 bits (180), Expect = 1e-13
Identities = 84/508 (16%), Positives = 145/508 (28%), Gaps = 128/508 (25%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+T+++L + +A L+ G S GDRV+I P E +V+ L ++ G I +
Sbjct: 59 LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG 117
Query: 170 ARE---LCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
+ L + P I+ S V+ + V
Sbjct: 118 GVTDERSDSVLSDSSPVAILTTSSAVDD---------------------------VVQHV 150
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEA--NDPLYILYTSGTTGKPQGCSELRSEDQP 284
I+ D L + E Y+ YTSG+T P
Sbjct: 151 ARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTR------------TP 198
Query: 285 KGIL---RPVGGHIATL--AWTMSVIYNMGQDDVW--WTAS--DMGWVVGHSYICYGPLA 335
G++ + V + L + + W DMG V+G P+
Sbjct: 199 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGIC----APIL 254
Query: 336 AGITSVMYEGKPDRTP-----DPSQYYRVIHNHKVNGLFTAPT-----ALRVIRREDKDS 385
G +V+ +P P+++ ++ + AP A R +D
Sbjct: 255 GGYPAVLT------SPVSFLQRPARWMHLMASDFHAFSA-APNFAFELAARRTTDDD--- 304
Query: 386 TLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHD 445
A ++ + E T K F A Q
Sbjct: 305 --MAGRDLGNILTILSGSERVQAATI----KRFADRF--------------ARF-NLQER 343
Query: 446 TVPPKY---------STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
+ P Y +T P + + L+ G A +
Sbjct: 344 VIRPSYWLAEATVYVATSKPGQPPETVDFDTESLS--AGHA--KPCAGGGATSLISYMLP 399
Query: 497 ATHFTSVEVRIIRND-GSECEPHELGRIVVK--------LPLPPGTMSTLYKAPQRFMKI 547
+ VRI+ +D EC +G I V P + T
Sbjct: 400 RSP----IVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPG 455
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTAR 575
T + T D+G+ + G +++ R
Sbjct: 456 --TPEGPWLRTGDSGFVTD-GKMFIIGR 480
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 64.0 bits (155), Expect = 5e-11
Identities = 35/272 (12%), Positives = 66/272 (24%), Gaps = 53/272 (19%)
Query: 221 FQRRCVEEAELTPGYDILWDDALAQRLSHR------------CVPVEANDPLYILYTSGT 268
F E+ P D+ + L Q + A+ + + GT
Sbjct: 43 FWLGMREQLNFDPIKDVKTINDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGT 102
Query: 269 TGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG---QDDVWWTASDMGWVVG 325
TG PK ++ A ++W MS + + +VG
Sbjct: 103 TGA------------PKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVG 150
Query: 326 HSYICYGPLAAGIT-----------SVMYEGKPDRTP-----DPSQYYRVIHNHKVNGLF 369
G+ + EG Q + N + L
Sbjct: 151 AINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLV 210
Query: 370 TAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF--NVTMLNHWW 427
T P LR + + + SL + + G + + + + +
Sbjct: 211 TTPPVLRELLKRPE----VVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYG 266
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPG 459
T + + + V P
Sbjct: 267 STSALGVSRSLLITSESQQV----IYDSFSPF 294
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 1e-09
Identities = 80/628 (12%), Positives = 153/628 (24%), Gaps = 210/628 (33%)
Query: 25 NDKY---YDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYN 81
Y + P + ++ DR L N +Q F K
Sbjct: 88 RINYKFLMSPIKTEQRQPS------MMTRMYIEQRDR-LYNDNQVFAK------------ 128
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQ--VSL--LAGS----LAAIGVSA 133
+V R P K +R+ EL+ V + + GS +A V
Sbjct: 129 ---YNVSRL----------QPYLK-LRQALL-ELRPAKNVLIDGVLGSGKTWVAL-DVCL 172
Query: 134 GDRVLIYMP-----------LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKP 182
+V M PE ++ ML L ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK------------------LLYQI----- 209
Query: 183 KVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL---W 239
+PN R N L I S + + + + + E L +L
Sbjct: 210 ----------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLNVQ 254
Query: 240 DDALAQRLSHRCVPVEANDPLYILYTSGTTG-----KPQGCSELRSEDQPKGILRPVGGH 294
+ + C IL T+ + + + +
Sbjct: 255 NAKAWNAFNLSC---------KILLTTRFKQVTDFLSAATTTHISLDHHSMTL------- 298
Query: 295 IATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSY------ICYG-PLAAGITSVMYEGKP 347
T S++ + + P I +
Sbjct: 299 --TPDEVKSLLLK---------------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 348 DRTPDPSQYYRVIHNHKVNGLFTA------PTALR------VIRREDKDSTLGAQYSTDS 395
++ ++ K+ + + P R + A T
Sbjct: 342 AT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTIL 391
Query: 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETG--HSI----TAHCLGYQ--HDTV 447
L ++ + K +++ + T SI H ++
Sbjct: 392 LSLIWFDVI--KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 448 PPKYSTGLPFPGYDGKYVNIVMLNWLDG--RAHCVRILPESLRKNVPKGQNATHFTSV-- 503
Y+ F D ++ +LD +H L KN+ + T F V
Sbjct: 450 VDHYNIPKTFDSDD------LIPPYLDQYFYSHIGHHL-----KNIEHPERMTLFRMVFL 498
Query: 504 -----EVRIIRNDGSECEPHEL-----------GRIVVKLPLPPGTMSTLYK-APQRFMK 546
E +I + + + I P ++ + P+
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 547 IYFTKFPGYYDTMDAGYYDENGYIYVTA 574
+ +K Y D + E+ I+ A
Sbjct: 559 LICSK---YTDLLRIALMAEDEAIFEEA 583
Score = 53.7 bits (128), Expect = 2e-07
Identities = 88/673 (13%), Positives = 183/673 (27%), Gaps = 186/673 (27%)
Query: 74 GEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQ---------EQVSLLAG 124
GE Y I E + KSI ++ E+ L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 125 SLAAIGVSAGDRVL----------IYMPLIPEAIVSMLATVRLGAIHSVVFGG---FAAR 171
+L + + + + P+ E + T ++ FA
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 172 ELCARLEHAKPKVIIAASCGVEPNK-VVRY------KTILNEALEISSCKPDYCIIFQRR 224
+ RL+ + A + P K V+ KT + AL++ C Y +
Sbjct: 130 NVS-RLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDV--CL-SYKV----- 176
Query: 225 CVEEAELTPGYDILW--------DDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCS 276
+ + I W + + + L + DP + + ++
Sbjct: 177 -----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI---DPNWTSRSDHSSNIKLRIH 228
Query: 277 ELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW----WTASDMGWVVGHSYIC-- 330
+++E + +P + L ++ +V W A ++ C
Sbjct: 229 SIQAELRRLLKSKP---YENCL-----LVL----LNVQNAKAWNAFNLS--------CKI 268
Query: 331 -----YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR--EDK 383
+ +T + + + +H T ++ + + +
Sbjct: 269 LLTTRF----KQVTDFL---------SAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCR 314
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHW--WQTETGHSITAHCLG 441
L + T + R L + E W ++W + +I L
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATW----------DNWKHVNCDKLTTIIESSLN 364
Query: 442 YQHDTVPPKYSTGLP-FPGYDGKYVNI-----VMLNWLDGRAHCVR-ILPESLRKNVPKG 494
K L FP +I ++ W D V ++ + + ++ +
Sbjct: 365 VLEPAEYRKMFDRLSVFP----PSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 495 QNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554
Q S+ + ++L + L++ + Y P
Sbjct: 420 QPKESTISI--------------PSI---YLELKVKLENEYALHR---SIVDHY--NIPK 457
Query: 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV-GDTAVI----- 608
+D+ D + Y Y + GH L + + V D +
Sbjct: 458 TFDSDDLIPPYLDQYFY---------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 609 --GVPEPTKGEIPFCL--------YIKKRIPLDKMGFSGLIGFGKLERPTSLL-----TN 653
G I L YI P + + ++ F L + L T+
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSKYTD 566
Query: 654 PIRV-LIKPYGPI 665
+R+ L+ I
Sbjct: 567 LLRIALMAEDEAI 579
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 2e-08
Identities = 67/410 (16%), Positives = 123/410 (30%), Gaps = 126/410 (30%)
Query: 172 ELCAR-LEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE-- 228
EL + L + +++ VEP+KV ++ +LN L F+ +E
Sbjct: 59 ELVGKFLGY------VSSL--VEPSKVGQFDQVLNLCLT----------EFENCYLEGND 100
Query: 229 -----AELTPGYDILWDDAL--------AQRLSHRCVPVEANDPLYILYTSGTT------ 269
A+L D A+ ++ R ++N L+ G
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 270 -GKPQGCS-----ELRS-----EDQPKGILRPVGGHIATLA---WTMSVIYNMGQDDVWW 315
G QG + ELR +++ ++ L ++ G + + W
Sbjct: 161 GG--QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 316 -----TASDMGWVVGHSYICYGPLAA---GITSVMYEGKPDRTPDPSQYYRVIHNHKVN- 366
D Y+ P++ G+ + + Y
Sbjct: 219 LENPSNTPD------KDYLLSIPISCPLIGVIQL------------AHYVVTAKLLGFTP 260
Query: 367 --------GLFTAPTAL---RVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAE 415
G L I D + ++ LF G C +E +
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS-VRKAITVLFFIGVRC-YEA--YPN 316
Query: 416 KSFNVTMLNHWWQTETGHSITAH---CLGYQHDTVPP---KYSTGLPFPGYDGKYVNIVM 469
S ++L E + + + V K ++ LP GK V I +
Sbjct: 317 TSLPPSILED--SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP----AGKQVEISL 370
Query: 470 LNWLDGRAHCVRI--LPESL-------RKN-VPKG--QNATHFTSVEVRI 507
+N G + V + P+SL RK P G Q+ F+ +++
Sbjct: 371 VN---GAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Score = 53.5 bits (128), Expect = 2e-07
Identities = 49/231 (21%), Positives = 73/231 (31%), Gaps = 88/231 (38%)
Query: 30 DAYRKSIEAPESFWTDVGNMATWSKKWDR------------ILD-NSDQP--FTKWFVGG 74
D Y+ S A DV W+R ILD + P T F GG
Sbjct: 1634 DLYKTSKAA-----QDV---------WNRADNHFKDTYGFSILDIVINNPVNLTIHF-GG 1678
Query: 75 E----INACYNAID-RHVERGMAKKVALIHDSPVTKSIRKVTY----AELQE----QVSL 121
E I Y+A+ + G K + + + + T+ L Q +L
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKE--INEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 122 LAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCA------ 175
AA L LIP + A G HS+ G +AA L +
Sbjct: 1737 TLMEKAAF------EDLKSKGLIPAD--ATFA----G--HSL--GEYAA--LASLADVMS 1778
Query: 176 ----------R---LEHAKPKVIIAAS----CGVEPNKVVRYKTILNEALE 209
R ++ A P+ + S + P +V + EAL+
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA--ASFSQEALQ 1827
Score = 52.7 bits (126), Expect = 4e-07
Identities = 72/435 (16%), Positives = 130/435 (29%), Gaps = 135/435 (31%)
Query: 359 VIHNHKVNGLFTAPTALRVI---RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAE 415
+ + + + PTA I +E + L T+ A D E AE
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE--PTEGF-----AA---DDEPTTPAE 59
Query: 416 KSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVML----- 470
+ LGY V P G++ ++ L
Sbjct: 60 -------------------LVGKFLGYVSSLVEP---------SKVGQFDQVLNLCLTEF 91
Query: 471 --NWLDGR-AHC-VRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVK 526
+L+G H L + + K + +I+N + RI+ K
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTK----------ELIKN-------YITARIMAK 134
Query: 527 LPLPPGTMSTLYKAPQR-FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD--DDVINVA 583
P + S L++A ++ F G +T D Y++E +Y T D+I +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLV-AIFGGQGNTDD--YFEELRDLYQTYHVLVGDLIKFS 191
Query: 584 GHRLSTSALE------------DVV--LSH----PDVGDTAVIGVPEPTKGEIPFCLYIK 625
LS +++ L + PD I + P G I Y+
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV- 250
Query: 626 KRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELV 685
+ +GF+ P L + G ++++ +D + V
Sbjct: 251 --VTAKLLGFT----------PGELRSYLKGATGHSQGLVTAVAIAETDS--WESFFVSV 296
Query: 686 REA------IG-------PIAAFKLST----------------SVTGLPRTRSGKTARKS 716
R+A IG P + S S++ L + + K+
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 717 IVDMARNKPLRVRLV 731
+ K + + LV
Sbjct: 357 NSHLPAGKQVEISLV 371
Score = 48.5 bits (115), Expect = 7e-06
Identities = 61/340 (17%), Positives = 105/340 (30%), Gaps = 115/340 (33%)
Query: 53 SKKWDRILDNSDQPFTKW--FVGGEINACY-------NAIDRHVERGMAKKVALIHDSPV 103
+ W+ + + F+G Y + ++ +E SP+
Sbjct: 286 TDSWESFFVSVRK-AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP------SPM 338
Query: 104 TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163
SI +T ++Q+ V+ L AG +V I ++V+ GA + V
Sbjct: 339 L-SISNLTQEQVQDYVNKTNSHLP-----AGKQVEI-------SLVN-------GAKNLV 378
Query: 164 VFGGFAA--RELCARLEHAKPKVIIAASCGVEPNKVV---RYKTILNEALEISSCKP--- 215
V G L L AK A G++ +++ R N L ++S P
Sbjct: 379 V-SGPPQSLYGLNLTLRKAK------APSGLDQSRIPFSERKLKFSNRFLPVAS--PFHS 429
Query: 216 DYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEAND---PLYILYTSGTTGKP 272
L P D++ D + +S A D P+Y G
Sbjct: 430 HL-------------LVPASDLINKDLVKNNVS-----FNAKDIQIPVY----DTFDG-- 465
Query: 273 QGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYI-CY 331
S+LR I + I L V W + ++I +
Sbjct: 466 ---SDLRVLS--GSISERIVDCIIRLP-------------VKWETTTQ---FKATHILDF 504
Query: 332 GPL-AAGITSVMYE------------GKPDRTPDPSQYYR 358
GP A+G+ + + G D PD ++
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 46.2 bits (109), Expect = 4e-05
Identities = 68/361 (18%), Positives = 97/361 (26%), Gaps = 156/361 (43%)
Query: 413 WAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVP--PKYSTGLPFPGYDGK-----YV 465
W NH+ T G SI D V P T F G GK Y
Sbjct: 1646 WNR------ADNHFKDTY-GFSIL--------DIVINNPVNLTIH-FGGEKGKRIRENYS 1689
Query: 466 NIVMLNWLDGRAHCVRILPE------SLRKNVPKGQ-NATHFTSVEVRIIRNDGSECEPH 518
++ +DG+ +I E S KG +AT FT P
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ--------------P- 1734
Query: 519 ELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDD 578
+ M KA +K G I D
Sbjct: 1735 ---ALT--------LME---KAAFEDLK-------------------SKGLI----PADA 1757
Query: 579 VINVAGHRLST---SALEDVVLSHPDVGDTAVIGVPEPTKGEIPF--CLYI-KKR----- 627
AGH S +AL ++ V + + + R
Sbjct: 1758 T--FAGH--SLGEYAAL------------ASLADV-------MSIESLVEVVFYRGMTMQ 1794
Query: 628 --IPLDKMGFS--GLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKE 683
+P D++G S G+I NP RV E +GK
Sbjct: 1795 VAVPRDELGRSNYGMIA-----------INPGRVAASFSQEALQYVV----ERVGKRTGW 1839
Query: 684 LVREAIGPIAAFKLSTS--VTGLPRTRSGKTARKSIVDMARN-----KPLRVRLVYLQQK 736
LV E I + + V +G +D N K ++ ++ LQ+
Sbjct: 1840 LV-E----IVNYNVENQQYVA------AGDLRA---LDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 737 L 737
L
Sbjct: 1886 L 1886
Score = 31.6 bits (71), Expect = 1.3
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 16/61 (26%)
Query: 68 TKWFVGGEINACYNAIDRHVERGM-----AKKVALIHDSPVTKS--IRKVTYAELQEQVS 120
T W V EI YN AL + V ++K+ ELQ+ +S
Sbjct: 1837 TGWLV--EI-VNYNV------ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 121 L 121
L
Sbjct: 1888 L 1888
Score = 31.2 bits (70), Expect = 1.5
Identities = 27/182 (14%), Positives = 53/182 (29%), Gaps = 66/182 (36%)
Query: 307 NMGQD---------DVW-----WTASDMGW----VVGHS----YICYGP-----LAAGIT 339
MG D DVW G+ +V ++ I +G + +
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 340 SVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAP------T-----AL--------RVIRR 380
++++E D + ++ I+ H + F + T AL ++
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 381 E---DKDST-----LGAQYS-----------TDSLRYLFVAGEHCDHETKNWAEKSFNVT 421
+ D+T LG +Y+ + +F G N
Sbjct: 1750 KGLIPADATFAGHSLG-EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 422 ML 423
M+
Sbjct: 1809 MI 1810
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 37.7 bits (88), Expect = 0.014
Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 50/158 (31%)
Query: 572 VTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLD 631
+T R DD++ V G + S +E++V++ P + I + + +D
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQI--------------TLSRDGHMD 375
Query: 632 KMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP 691
++ + ++ ++ + +EL+ ++ +G
Sbjct: 376 RL----------------------DLAVELRSEAAASVTDGERAALARELQHRIKTMVG- 412
Query: 692 IAAFKLSTSVT-----GLPRTRSGKTARKSIVDMARNK 724
+S+ VT G+P T +GK R ++D R
Sbjct: 413 -----VSSGVTVLAAGGIPATATGKARR--VIDR-RQA 442
Score = 35.4 bits (82), Expect = 0.063
Identities = 38/200 (19%), Positives = 64/200 (32%), Gaps = 30/200 (15%)
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM-- 308
VP E + + +SGTTGKP + I T A +
Sbjct: 88 AVPRE--QVVRVHASSGTTGKPTVVGYTARD-------------IDTWANVTARSIRAAG 132
Query: 309 -GQDDVWWTASDMGWVVGHSYICYGPLAAGITSV-MYEGKPDRTPDPSQYYRVIHNHKVN 366
D A G G I YG G V M G+ ++ ++I + +
Sbjct: 133 GRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGGQTEKQ------VQLIRDFEPK 186
Query: 367 GLFTAPT-ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH 425
+ P+ L +I + G + SL+ E +N E + L+
Sbjct: 187 IILVTPSYMLNLIDEMVR---QGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDI 243
Query: 426 WWQTET-GHSITAHCLGYQH 444
+ +E G + C+ +
Sbjct: 244 YGLSEVMGPGVACECVETKD 263
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 35.7 bits (83), Expect = 0.047
Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 30/199 (15%)
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM-- 308
VP + I +SGTTGKP + D I T A ++
Sbjct: 86 AVPQD--RISRIHASSGTTGKPTV-VGYTAAD------------IDTWANLVARSIRAAG 130
Query: 309 -GQDDVWWTASDMGWVVGHSYICYGPLAAGITSV-MYEGKPDRTPDPSQYYRVIHNHKVN 366
+ D + G G YG AG+T + G+ ++ ++I + + +
Sbjct: 131 ARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQ------VQLIQDFRPD 184
Query: 367 GLFTAPT-ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH 425
+ P+ L + ++ G SLR E ++ + E+ + ++
Sbjct: 185 IIMVTPSYMLSIADEIER---QGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDI 241
Query: 426 WWQTE-TGHSITAHCLGYQ 443
+ +E G + + C+ +
Sbjct: 242 YGLSEVMGPGVASECVETK 260
Score = 31.1 bits (71), Expect = 1.2
Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 52/153 (33%)
Query: 572 VTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLD 631
+T R DD++ V G + + +E+ +L + P + + + K PLD
Sbjct: 328 ITGRSDDMMIVRGVNVFPTQIEEQLLKQRALA-------PH-------YQIVLTKEGPLD 373
Query: 632 KMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP 691
+ + V P T + + + L ++ IG
Sbjct: 374 VL--------------------TLNVEPCPETAPD----TAAIQVAKQALAYDIKSLIG- 408
Query: 692 IAAFKLSTSVT-----GLPRTRSGKTARKSIVD 719
++ + G+ R+ GK R +VD
Sbjct: 409 -----VTAVINVLPVNGIERS-VGKARR--VVD 433
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 34.9 bits (81), Expect = 0.088
Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 27/178 (15%)
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM---GQDDVWWTASDMG 321
+SGTTG P D + + A ++ M + DV+ +S G
Sbjct: 94 SSGTTGNPTV-IVHSQHD------------LDSWANLVARCLYMVGIRKTDVFQNSSGYG 140
Query: 322 WVVGHSYICYGPLAAGITSV-MYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT-ALRVIR 379
G YG G +V G R + I + K L P+ A+R+
Sbjct: 141 MFTGGLGFQYGAERLGCLTVPAAAGNSKRQ------IKFISDFKTTALHAIPSYAIRLAE 194
Query: 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITA 437
+ G +L+ L + E E + E+ NV N + TE A
Sbjct: 195 VFQE---EGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVA 249
Score = 33.0 bits (76), Expect = 0.39
Identities = 21/158 (13%), Positives = 53/158 (33%), Gaps = 53/158 (33%)
Query: 572 VTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLD 631
+ R DD+ + G + +E +++ P++G + + ++ D
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELG-------SN-------YLITLETVNNQD 371
Query: 632 KMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP 691
+M + V + + E+I +++ +++ I
Sbjct: 372 EM--------------------IVEVELSDLSTDN----YIELEKIRRDIIRQLKDEIL- 406
Query: 692 IAAFKLSTSVT-----GLPRTRSGKTARKSIVDMARNK 724
++ V LP++ GK R + D+ R+
Sbjct: 407 -----VTPKVKLVKKGSLPQS-EGKAVR--VKDL-RDN 435
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 33.0 bits (76), Expect = 0.32
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 122 LAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF-AARELCARLEHA 180
+ S AA AG + +P A+ + V GA + G F EL ++ A
Sbjct: 96 TSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKM--A 153
Query: 181 KPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCII 220
I+ V P ++ KT E +++ PD +
Sbjct: 154 ADFPTISLVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHAL 193
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 30.7 bits (70), Expect = 1.7
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 122 LAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF-AARELCARLEHA 180
+ S AA AG R + +P AI + + GA + G F A + ++
Sbjct: 90 TSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFDDALNIVRKIGEN 149
Query: 181 KPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCII 220
P + V P ++ KT E + PDY I
Sbjct: 150 FP---VEIVNSVNPYRIEGQKTAAFEICDTLGEAPDYHFI 186
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 30.5 bits (70), Expect = 2.1
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 19/75 (25%)
Query: 138 LIYM------PLIPEAIVSMLA--TVRLG---AIHSVVFGGFA------ARELCARLEHA 180
+ Y P+ + +ML T G ++HS +G A ARE A+L +
Sbjct: 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHS--YGFKAREAVQEAREKVAKLVNG 58
Query: 181 KPKVIIAASCGVEPN 195
++ S E N
Sbjct: 59 GGGTVVFTSGATEAN 73
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 29.9 bits (68), Expect = 3.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 122 LAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF-AARELCARLEHA 180
A S AA AG ++ +P A+ + ++ GA V G F A L +L A
Sbjct: 88 TAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDALRLTQKLTEA 147
Query: 181 KPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCII 220
P +A V P+++ KT+ E ++ P Y +
Sbjct: 148 FP---VALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHAL 184
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann
fold, ADP-binding, transferase; HET: ADP; 2.30A
{Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Length = 485
Score = 29.8 bits (68), Expect = 3.1
Identities = 8/56 (14%), Positives = 15/56 (26%)
Query: 516 EPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIY 571
+ G + L + + + P YY+ Y + G Y
Sbjct: 49 AAVTDPVKCFEFTDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDY 104
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 3.4
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 11/25 (44%)
Query: 643 KLERPTSLLTNPIRVLIKPYGPISS 667
KL+ SL K Y S+
Sbjct: 24 KLQ--ASL---------KLYADDSA 37
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 29.4 bits (67), Expect = 4.6
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 19/74 (25%)
Query: 139 IYM------PLIPEAIVSMLA--TVRLG---AIHSVVFGGFA------ARELCARLEHAK 181
+Y + + M+ + G + H G A ARE A++
Sbjct: 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHG--MGIEANLHMEKAREKVAKVLGVS 60
Query: 182 PKVIIAASCGVEPN 195
P I SC E
Sbjct: 61 PSEIFFTSCATESI 74
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 29.0 bits (65), Expect = 6.0
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 115 LQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF--AARE 172
++ +L G + + V M L P + + G +++ GG +
Sbjct: 156 FTRRIGMLKG----TPKAVLNAVCDRMTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQR 211
Query: 173 LCARL 177
L AR
Sbjct: 212 LKARY 216
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 28.8 bits (65), Expect = 6.9
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 80 YNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
Y + E+ A + L + T+ I + A+L L+A ++ + V
Sbjct: 187 YCILTTEDEKKAADILGLPVEEVSTQVIPRDRIAKLISIHGLIASAIERLAV 238
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 29.1 bits (65), Expect = 7.2
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 507 IIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546
I + + P LG KL + P T + +K
Sbjct: 469 IEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVK 508
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 28.7 bits (65), Expect = 8.1
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 19/74 (25%)
Query: 139 IYM------PLIPEAIVSMLA--TVRLG---AIHSVVFGGFA------ARELCARLEHAK 181
+YM PL PE I ++ G + + G A AR A++ K
Sbjct: 20 VYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYV--AGRKAKDIINTARASLAKMIGGK 77
Query: 182 PKVIIAASCGVEPN 195
P+ II S G E N
Sbjct: 78 PQDIIFTSGGTESN 91
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 28.4 bits (64), Expect = 8.6
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 80 YNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
Y ID VE+ + + + L T+++++ +A ++L+A S+ + V
Sbjct: 198 YANIDPFVEKYVCENLGLEAAPISTQTLQRDRHAHYMSTLALIATSIEKMAV 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,877,180
Number of extensions: 758985
Number of successful extensions: 2179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2029
Number of HSP's successfully gapped: 113
Length of query: 737
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 636
Effective length of database: 3,881,772
Effective search space: 2468806992
Effective search space used: 2468806992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)