RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8076
(737 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 454 bits (1170), Expect = e-152
Identities = 208/711 (29%), Positives = 332/711 (46%), Gaps = 112/711 (15%)
Query: 26 DKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQP---FTKWFVGGEINACYNA 82
++Y Y++SI P++FW + G + W + ++ + S P KW+ G +N N
Sbjct: 18 EQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANC 77
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+DRH++ + A+I + T + ++Y EL V A +L +G+ GD V IYMP
Sbjct: 78 LDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMP 136
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
++PEA V+MLA R+GA+HSV+FGGF+ + + + +++I A GV + + K
Sbjct: 137 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKK 196
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQ-RLSHRCVPVEANDPLY 261
+++AL+ + +I +R + + G D+ W D + + H+ + A DPL+
Sbjct: 197 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLF 256
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
ILYTSG+TGK PKG+L GG++ A T +++ D++W +D+G
Sbjct: 257 ILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVG 304
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
WV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+TAPTA+R + E
Sbjct: 305 WVTGHSYLLYGPLACGATTLMFEGVPNW-PTPARMCQVVDKHQVNILYTAPTAIRALMAE 363
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETGHSITAH 438
+ G S SLR L GE + E W K +++ WWQTETG +
Sbjct: 364 GDKAIEGTDRS--SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 421
Query: 439 CLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNAT 498
G S PF G
Sbjct: 422 LPGAIELKAG---SATRPFFG--------------------------------------- 439
Query: 499 HFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDT 558
V+ ++ N+G E G +V+ PG TL+ +RF + YF+ F Y +
Sbjct: 440 ----VQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQTYFSTFKNMYFS 494
Query: 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEI 618
D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV+G+P KG+
Sbjct: 495 GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQA 554
Query: 619 PFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIG 678
Y+ L P E+
Sbjct: 555 I-YAYV--------------------------------TLNHGEEP---------SPELY 572
Query: 679 KELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVR 729
E++ VR+ IGP+A + LP+TRSGK R+ + +A +
Sbjct: 573 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLG 623
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 392 bits (1007), Expect = e-128
Identities = 208/712 (29%), Positives = 324/712 (45%), Gaps = 106/712 (14%)
Query: 28 YYDAYRKSIEAPESFWTDV-GNMATWSKKWDRILDNSDQ------PFTKWFVGGEINACY 80
Y +++SIE P F+ WSK +D++ + WF+ G++NACY
Sbjct: 3 YQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACY 62
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLA-AIGVSAGDRVLI 139
N +DRH + K A+I + +TY EL E+V +A L ++GV GD V +
Sbjct: 63 NCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 121
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR 199
YMP++PEAI+++LA R+GAIHSVVF GF++ L R+ KV+I KV+
Sbjct: 122 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIE 181
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
K I+++AL + + + A P + + + C PV++ DP
Sbjct: 182 TKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDP 241
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319
L++LYTSG+TG PKG+ G++ TM ++ Q+DV++TA D
Sbjct: 242 LFLLYTSGSTGA------------PKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD 289
Query: 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379
+GW+ GH+Y+ YGPL G ++++EG P P+ S+Y+ +I HKV + APTALR+++
Sbjct: 290 IGWITGHTYVVYGPLLYGCATLVFEGTPAY-PNYSRYWDIIDEHKVTQFYVAPTALRLLK 348
Query: 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETGHSIT 436
R +S SLR L GE E W + + +++ +WQTE+G +
Sbjct: 349 RAGDS--YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV 406
Query: 437 AHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
G P S PF G D +L + + +
Sbjct: 407 TPLAGGVTPMKPG--SASFPFFGID------------------AVVLDPNTGEELN---- 442
Query: 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556
H G + VK P T++K R++ Y +PGYY
Sbjct: 443 -------------------TSHAEGVLAVKAA-WPSFARTIWKNHDRYLDTYLNPYPGYY 482
Query: 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616
T D D++GYI++ R DDV+NV+GHRLST+ +E ++ P V + AV+G + G
Sbjct: 483 FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG 542
Query: 617 EIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEE 676
+ + F L+ +S T L ++
Sbjct: 543 QA-------------------VAAFVVLKNKSSWSTATDDEL----------------QD 567
Query: 677 IGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
I K L VR+ IGP AA KL V LP+TRSGK R+ + + + ++
Sbjct: 568 IKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQL 619
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 231 bits (590), Expect = 4e-68
Identities = 114/653 (17%), Positives = 210/653 (32%), Gaps = 146/653 (22%)
Query: 80 YNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLI 139
++ ++R +K + T + + TYAE+ ++ L G L A+GV GDRV
Sbjct: 14 WDFLERAAAL-FGRKEVVSR--LHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 70
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR 199
+ + A +GA+ + +E+ L HA+ KV++ + + +R
Sbjct: 71 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR 130
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
+ + + V E P + +++AL + V V
Sbjct: 131 GE-----------------LKTVQHFVVMDEKAPEGYLAYEEALGEE--ADPVRVPERAA 171
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319
+ YT+GTTG P+G + + +LA ++ + + DV
Sbjct: 172 CGMAYTTGTTGLPKGV-----------VYSHRALVLHSLAASLVDGTALSEKDVVLPVVP 220
Query: 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379
M + V + Y G V+ P DP+ + V PT +
Sbjct: 221 M-FHVNAWCLPYAATLVGAKQVL----PGPRLDPASLVELFDGEGVTFTAGVPTVWLALA 275
Query: 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHC 439
+ + +LR L V G E+ V + + TET + +
Sbjct: 276 DYLES----TGHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNF 330
Query: 440 LGYQHDTVPP------KYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493
+ +++ K TGLP P
Sbjct: 331 VKSHLESLSEEEKLTLKAKTGLPIPL---------------------------------- 356
Query: 494 GQNATHFTSVEVRIIRNDGSECEP--HELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK 551
V +R+ +G LG + +K P Y +
Sbjct: 357 ---------VRLRVADEEGRPVPKDGKALGEVQLK---GPWITGGYYGNEEATRSALT-- 402
Query: 552 FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVP 611
G++ T D +DE GY+ + R D+I G +S+ LE+ ++ HP V + AV+ +P
Sbjct: 403 PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIP 462
Query: 612 EPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCT 671
P E P +
Sbjct: 463 HPKWQERP-LAVV---------------------------------------------VP 476
Query: 672 RSDEEIGKEL-KELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARN 723
R ++ +EL + L++ +PRT +GK ++++ + +N
Sbjct: 477 RGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 529
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 202 bits (513), Expect = 3e-57
Identities = 102/669 (15%), Positives = 209/669 (31%), Gaps = 139/669 (20%)
Query: 58 RILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQE 117
+ + PF G + A+ R+ +A +TYAE E
Sbjct: 2 KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALV--PGTIAFTDAH----IEVNITYAEYFE 55
Query: 118 QVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARL 177
LA ++ G++ R+++ + + +L + +G + + REL +
Sbjct: 56 MSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSM 115
Query: 178 EHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237
++P V+ + G++ V+ K + + + I K DY + L PG++
Sbjct: 116 NISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFN- 174
Query: 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT 297
+ I+ +SG+TG PKG+ P
Sbjct: 175 -------EYDFVPESFDRDKTIALIMNSSGSTGL------------PKGVALPHRTACVR 215
Query: 298 LAWTMSVIY--NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQ 355
+ I+ + D + G + +MY +
Sbjct: 216 FSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY------RFEEEL 269
Query: 356 YYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWA 414
+ R + ++K+ PT + L +Y +L + G E + A
Sbjct: 270 FLRSLQDYKIQSALLVPTLFSFFAKST----LIDKYDLSNLHEIASGGAPLSKEVGEAVA 325
Query: 415 EKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474
++ + + TET +I G + G P +
Sbjct: 326 KRFHLPGIRQGYGLTETTSAILITPEGDDKPG-----AVGKVVPFF-------------- 366
Query: 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGT 533
E +++ D G ++ G + V+ P
Sbjct: 367 -----------------------------EAKVVDLDTGKTLGVNQRGELCVR---GPMI 394
Query: 534 MSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALE 593
MS P K G+ + D Y+DE+ + ++ R +I G++++ + LE
Sbjct: 395 MSGYVNNP-EATNALIDK-DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 452
Query: 594 DVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTN 653
++L HP++ D V G+P+ GE+P +
Sbjct: 453 SILLQHPNIFDAGVAGLPDDDAGELPAAV------------------------------- 481
Query: 654 PIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLS-TSVTGLPRTRSGKT 712
V+++ ++ KE+ + V + + V +P+ +GK
Sbjct: 482 ---VVLEHGKTMTE-----------KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKL 527
Query: 713 ARKSIVDMA 721
+ I ++
Sbjct: 528 DARKIREIL 536
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 200 bits (509), Expect = 5e-57
Identities = 93/634 (14%), Positives = 191/634 (30%), Gaps = 158/634 (24%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ V + VA++ ++ ++TY EL + + LA G+ V I M
Sbjct: 29 FEEQVSK-RPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMME 81
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
+ + +LA ++ G + + + + L+ ++ ++++ V +++
Sbjct: 82 KSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG 141
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
+ D + ++ VP ++ D Y+
Sbjct: 142 QVE------------------------------IFEEDTIKIREGTNLHVPSKSTDLAYV 171
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322
+YTSGTTG P+G I+ L N+ + D + + +
Sbjct: 172 IYTSGTTGNPKGT-------------MLEHKGISNLKVFFENSLNVTEKDRIGQFASISF 218
Query: 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382
+ L ++ D D ++ + I+ ++ + PT + + E
Sbjct: 219 DASVWEMFMALLTGASLYIIL---KDTINDFVKFEQYINQKEITVITLPPTYVVHLDPER 275
Query: 383 KDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGY 442
S ++ L AG N ++ VT +N + TET
Sbjct: 276 ILS----------IQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETT---------- 313
Query: 443 QHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502
I W+ + + +VP G +
Sbjct: 314 ------------------------ICATTWVATKET--------IGHSVPIGAPIQNT-- 339
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLP-LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
++ I+ + E G + + L G Q+F+ F Y T D
Sbjct: 340 -QIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 398
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
+ +G I R D+ + + GHR+ +E ++L H + +TAV + + C
Sbjct: 399 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL-C 457
Query: 622 LYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKEL 681
Y + ++L
Sbjct: 458 AYFVSEKHIPL----------------------------------------------EQL 471
Query: 682 KELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715
++ E + + +P T +GK RK
Sbjct: 472 RQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRK 505
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 195 bits (496), Expect = 6e-55
Identities = 107/645 (16%), Positives = 192/645 (29%), Gaps = 146/645 (22%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ + ++A+ + +Y EL + LA +G+ DRV++ +P
Sbjct: 31 LRDRAAK-YGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
I E + A RLGA+ + E+ E A+ I + +
Sbjct: 84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR- 142
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
+ + ++ + + + V+++D ++
Sbjct: 143 ---------------QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322
+ G+TG K I R +I +L ++ V +
Sbjct: 188 QLSGGSTGL------------SKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHN 235
Query: 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382
S G L AG V+ +P P + +I KV P V
Sbjct: 236 YPLSSPGVLGVLYAGGRVVLS-----PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290
Query: 383 KDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGY 442
+ SL+ L V G E + F T+ + E + L
Sbjct: 291 SS----RRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE--GLVNYTRLDD 344
Query: 443 QHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502
+ + + G P YD
Sbjct: 345 PEEIIVN--TQGKPMSPYD----------------------------------------- 361
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAG 562
E R+ + + +P E G ++ + P G+Y T D
Sbjct: 362 -ESRVWDDHDRDVKPGETGHLLTRGPYT-----IRGYYKAEEHNAASFTEDGFYRTGDIV 415
Query: 563 YYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCL 622
+GYI V R D IN G +++ +E+ +L+HP V D A++ +P+ GE C+
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS-CV 474
Query: 623 YIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELK 682
+I R + ELK
Sbjct: 475 FI---------------------------------------------IPRDEAPKAAELK 489
Query: 683 ELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNK 724
+RE +AA+K+ V P+T GK ++K++ + K
Sbjct: 490 AFLRERG--LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 177 bits (449), Expect = 9e-49
Identities = 101/545 (18%), Positives = 171/545 (31%), Gaps = 102/545 (18%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ R R AL + ++T+AEL+ +V +A L A G+ RV + P
Sbjct: 8 LRRAATR-APDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
+ ++++LA RLGA+ +++ + EL ++ + + A
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG------------ 110
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
A I IIF V + E + E P +I
Sbjct: 111 -RQVADAIFQSGSGARIIFLGDLVRDGE-----------PYSYGPPIEDPQREPAQPAFI 158
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQD-DVWWTASDMG 321
YTSGTTG PK + P + + + + + +V +
Sbjct: 159 FYTSGTTGL------------PKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLY 206
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
VVG + LA T V+ E P +++ +V LF PT L +
Sbjct: 207 HVVGFFAVLVAALALDGTYVVVEE-----FRPVDALQLVQQEQVTSLFATPTHLDALAAA 261
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
+ G+ DSLR++ AG + +N + TE +S+
Sbjct: 262 AAHA--GSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQ-- 317
Query: 442 YQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFT 501
G
Sbjct: 318 -------------------------------------------------PKTGTEMAPGF 328
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
EVRI+R G E G + + Y + G+Y T D
Sbjct: 329 FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGY--LNQPQATAEKLQDGWYRTSDV 386
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
+ G + + R DD+I G + S +E V+ + P V + VIG+ + G+
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 622 LYIKK 626
+ +
Sbjct: 447 CVVPR 451
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus
radiodurans [TaxId: 1299]}
Length = 66
Score = 27.7 bits (62), Expect = 0.80
Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 673 SDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMAR 722
+ KE+ +E + + + L + + R+ + A+
Sbjct: 10 QATDFAKEIDARKKE----LMELRFQAAAGQLAQPHRVRQLRREV---AQ 52
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia
coli [TaxId: 562]}
Length = 60
Score = 27.2 bits (61), Expect = 0.95
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 673 SDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMAR 722
S EE+ EL L+RE ++ + L ++ K R+ + AR
Sbjct: 10 SVEELNTELLNLLRE----QFNLRMQAASGQLQQSHLLKQVRRDV---AR 52
>d1qfxa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus niger [TaxId: 5061]}
Length = 447
Score = 29.7 bits (66), Expect = 1.4
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 295 IATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPS 354
I + + V+ + A + +G+ P+ +T + D
Sbjct: 309 ITPILAALGVLIPNEDLPLDRVAFGNPYSIGN----IVPMGGHLTIERLSCQATALSDEG 364
Query: 355 QYYRVIHNHKV 365
Y R++ N V
Sbjct: 365 TYVRLVLNEAV 375
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 28.6 bits (63), Expect = 2.3
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLA 127
+D H+ + + + K T EL L G A
Sbjct: 131 PVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYA 176
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 27.7 bits (60), Expect = 5.6
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 503 VEVRII--RNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMD 560
V R + + + + + G + L + + + P YY+
Sbjct: 35 VRTRTLIPGYPAVKAAVTDPVK-CFEFTDLLGEKADLLEVQHERLDLLILDAPAYYERSG 93
Query: 561 AGYYDENGYIY 571
Y + G Y
Sbjct: 94 GPYLGQTGKDY 104
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 27.6 bits (60), Expect = 6.1
Identities = 37/274 (13%), Positives = 75/274 (27%), Gaps = 27/274 (9%)
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVV---RYKTILNEALEISSCKPDYCIIFQRRC 225
AR A L A P+ I+ S E + + + I + K ++ +
Sbjct: 52 IARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR 111
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEANDP----LYILYTSGTTGKPQGCSELRSE 281
E E G+++ + + A + I++ + G Q + +
Sbjct: 112 QLERE---GFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEM 168
Query: 282 DQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSV 341
+ +GI+ + D+ D+ GH YGP G V
Sbjct: 169 CRARGII---------YHVDATQSVGKLPIDLSQLKVDLMSFSGHKI--YGPKGIGALYV 217
Query: 342 MYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFV 401
+ + + R K+ LR
Sbjct: 218 RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLW 277
Query: 402 AG------EHCDHETKNWAEKSFNVTMLNHWWQT 429
G + + + ++ A NV+ ++
Sbjct: 278 NGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGES 311
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI,
PsaL {Synechococcus elongatus [TaxId: 32046]}
Length = 151
Score = 26.6 bits (59), Expect = 8.1
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 24/91 (26%)
Query: 46 VGNMATWSKKWDRILDNSDQPFTKWFVGGEIN-ACY----NAIDRHVERGMAKKVALIHD 100
VG+++T SD K F+G N Y + I R +E GMA LI
Sbjct: 11 VGHLST---------PISDSGLVKTFIG---NLPAYRQGLSPILRGLEVGMAHGYFLIGP 58
Query: 101 SPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
+R A L G ++ I +
Sbjct: 59 WVKLGPLRDSDVA-------NLGGLISGIAL 82
>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5
(TONEBP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.5 bits (56), Expect = 9.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 493 KGQNATHFTSVEVRIIRNDGSECEPH 518
Q+ T SV + ++ N G +
Sbjct: 69 HDQHITLPVSVGIYVVTNAGRSHDVQ 94
>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId:
9606]}
Length = 232
Score = 26.6 bits (57), Expect = 9.6
Identities = 24/187 (12%), Positives = 44/187 (23%), Gaps = 7/187 (3%)
Query: 184 VIIAASC--GVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDD 241
V+ AA C ++ +I E + E L +
Sbjct: 36 VLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEK 95
Query: 242 ALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT 301
A + + D + G + + D + + +
Sbjct: 96 AKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRN 155
Query: 302 MSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLA-----AGITSVMYEGKPDRTPDPSQY 356
+ ++ S G + PL G+TS E K P Y
Sbjct: 156 HYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFRGVTSFGLENKCGDPRGPGVY 215
Query: 357 YRVIHNH 363
+ H
Sbjct: 216 ILLSKKH 222
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,919,016
Number of extensions: 144809
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 36
Length of query: 737
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 645
Effective length of database: 1,144,436
Effective search space: 738161220
Effective search space used: 738161220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)