Query psy8077
Match_columns 223
No_of_seqs 293 out of 1901
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 17:49:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00210 40S ribosomal protein 100.0 3.4E-46 7.4E-51 305.2 11.4 133 26-202 2-141 (141)
2 COG0103 RpsI Ribosomal protein 100.0 4.3E-46 9.2E-51 299.0 10.9 126 28-202 5-130 (130)
3 PTZ00086 40S ribosomal protein 100.0 8.6E-46 1.9E-50 304.6 12.1 134 25-202 7-147 (147)
4 CHL00079 rps9 ribosomal protei 100.0 4.7E-45 1E-49 295.0 10.8 127 28-202 4-130 (130)
5 PRK00132 rpsI 30S ribosomal pr 100.0 1.7E-44 3.6E-49 291.8 10.8 127 27-202 4-130 (130)
6 PRK00474 rps9p 30S ribosomal p 100.0 1.6E-43 3.4E-48 287.4 11.2 130 27-202 3-134 (134)
7 TIGR03627 arch_S9P archaeal ri 100.0 2.4E-43 5.2E-48 285.0 10.6 126 29-202 2-130 (130)
8 PF00380 Ribosomal_S9: Ribosom 100.0 5.4E-43 1.2E-47 280.0 4.7 120 33-202 1-121 (121)
9 KOG1697|consensus 100.0 4.3E-36 9.3E-41 263.5 9.1 126 28-202 150-275 (275)
10 KOG1753|consensus 100.0 4.1E-35 9E-40 235.2 9.4 137 21-202 2-145 (145)
11 CHL00079 rps9 ribosomal protei 99.4 1.4E-12 3.1E-17 105.8 6.9 83 77-221 8-91 (130)
12 COG0103 RpsI Ribosomal protein 99.2 2E-11 4.4E-16 98.7 7.0 83 76-221 8-91 (130)
13 PF00380 Ribosomal_S9: Ribosom 99.2 3.5E-11 7.7E-16 96.6 6.8 37 186-222 47-83 (121)
14 PRK00132 rpsI 30S ribosomal pr 99.2 6E-11 1.3E-15 96.4 6.4 29 77-105 9-38 (130)
15 PRK00474 rps9p 30S ribosomal p 98.4 4.8E-07 1E-11 73.9 5.0 36 187-222 57-92 (134)
16 PLN00210 40S ribosomal protein 98.4 2.1E-06 4.5E-11 70.8 8.5 89 72-222 3-92 (141)
17 KOG1697|consensus 98.2 3.1E-06 6.7E-11 75.6 7.1 27 79-105 157-183 (275)
18 KOG1753|consensus 98.2 8.6E-07 1.9E-11 72.1 3.1 90 72-223 7-97 (145)
19 PTZ00086 40S ribosomal protein 98.2 3.1E-06 6.7E-11 70.2 5.7 87 74-222 11-98 (147)
20 TIGR03627 arch_S9P archaeal ri 98.2 3.5E-06 7.6E-11 68.6 5.6 33 189-221 55-87 (130)
21 COG4988 CydD ABC-type transpor 87.9 0.53 1.2E-05 46.8 3.7 96 44-158 371-474 (559)
22 KOG0058|consensus 82.3 1 2.2E-05 46.0 2.8 66 90-157 520-621 (716)
23 COG2884 FtsE Predicted ATPase 79.4 2.6 5.6E-05 37.3 3.9 97 44-158 52-155 (223)
24 TIGR02868 CydC thiol reductant 75.8 2.6 5.6E-05 40.5 3.2 106 32-157 370-487 (529)
25 PRK10790 putative multidrug tr 72.7 11 0.00023 36.9 6.7 30 127-157 464-493 (592)
26 COG1132 MdlB ABC-type multidru 70.6 7 0.00015 38.0 4.9 108 32-158 364-483 (567)
27 COG2080 CoxS Aerobic-type carb 68.8 5.9 0.00013 33.4 3.4 53 50-104 5-59 (156)
28 PTZ00265 multidrug resistance 68.1 3 6.6E-05 45.8 2.0 69 88-157 1272-1375(1466)
29 TIGR03796 NHPM_micro_ABC1 NHPM 67.4 9.1 0.0002 38.3 5.0 107 32-157 514-632 (710)
30 PRK10787 DNA-binding ATP-depen 67.2 13 0.00029 38.4 6.2 108 50-158 567-691 (784)
31 PLN03130 ABC transporter C fam 66.3 7.3 0.00016 43.4 4.4 107 32-158 1274-1392(1622)
32 PRK11174 cysteine/glutathione 65.5 8.8 0.00019 37.4 4.4 93 46-157 401-502 (588)
33 TIGR00957 MRP_assoc_pro multi 65.0 8.8 0.00019 42.4 4.7 107 32-158 1321-1439(1522)
34 TIGR01193 bacteriocin_ABC ABC- 64.1 7.8 0.00017 38.8 3.8 108 32-157 509-628 (708)
35 PLN03232 ABC transporter C fam 62.5 11 0.00024 41.6 4.8 107 32-158 1271-1389(1495)
36 COG3840 ThiQ ABC-type thiamine 59.4 15 0.00034 32.5 4.3 87 43-160 48-149 (231)
37 COG1750 Archaeal serine protea 58.5 23 0.00049 35.7 5.8 72 86-159 56-133 (579)
38 COG1125 OpuBA ABC-type proline 57.8 14 0.00031 34.1 4.0 109 32-157 36-152 (309)
39 TIGR00958 3a01208 Conjugate Tr 57.6 13 0.00027 37.7 4.0 107 32-157 516-634 (711)
40 TIGR03797 NHPM_micro_ABC2 NHPM 53.2 15 0.00033 36.7 3.7 106 32-157 488-605 (686)
41 KOG3288|consensus 52.9 13 0.00029 34.0 2.9 29 126-154 272-300 (307)
42 COG1135 AbcC ABC-type metal io 52.7 21 0.00046 33.6 4.3 106 32-157 41-158 (339)
43 COG2274 SunT ABC-type bacterio 52.6 19 0.00041 37.0 4.4 102 32-157 508-626 (709)
44 COG1126 GlnQ ABC-type polar am 52.0 29 0.00063 31.2 4.9 27 32-58 37-66 (240)
45 PF03755 YicC_N: YicC-like fam 51.4 49 0.0011 27.2 6.0 81 81-162 5-94 (159)
46 PRK11160 cysteine/glutathione 51.1 22 0.00048 34.8 4.5 107 32-157 375-492 (574)
47 TIGR01846 type_I_sec_HlyB type 48.9 23 0.00051 35.4 4.3 94 45-157 508-610 (694)
48 TIGR03375 type_I_sec_LssB type 48.2 21 0.00046 35.7 3.9 30 127-157 589-618 (694)
49 PF13541 ChlI: Subunit ChlI of 46.2 57 0.0012 26.0 5.4 68 90-160 7-74 (121)
50 TIGR02857 CydD thiol reductant 44.1 28 0.0006 33.5 3.9 25 45-69 373-397 (529)
51 TIGR03198 pucE xanthine dehydr 42.1 35 0.00077 28.4 3.7 52 50-103 5-58 (151)
52 TIGR01194 cyc_pep_trnsptr cycl 41.0 54 0.0012 32.0 5.4 23 45-67 393-415 (555)
53 TIGR01271 CFTR_protein cystic 39.7 30 0.00065 38.3 3.7 92 47-158 1271-1371(1490)
54 TIGR03193 4hydroxCoAred 4-hydr 38.9 32 0.00069 28.7 3.0 84 50-151 3-89 (148)
55 KOG0055|consensus 38.5 38 0.00082 37.1 4.1 93 46-157 1042-1143(1228)
56 PRK11176 lipid transporter ATP 37.5 72 0.0016 31.0 5.6 38 32-69 378-418 (582)
57 TIGR02903 spore_lon_C ATP-depe 36.6 95 0.002 31.2 6.4 63 90-159 474-540 (615)
58 PTZ00243 ABC transporter; Prov 36.6 47 0.001 37.1 4.6 106 32-157 1345-1462(1560)
59 KOG0055|consensus 36.3 37 0.0008 37.2 3.6 68 90-158 405-507 (1228)
60 TIGR00763 lon ATP-dependent pr 35.6 73 0.0016 32.8 5.5 108 51-158 572-695 (775)
61 PRK13657 cyclic beta-1,2-gluca 35.3 58 0.0012 31.9 4.6 39 32-70 370-411 (588)
62 PF10429 Mtr2: Nuclear pore RN 32.8 59 0.0013 27.7 3.7 52 45-98 34-85 (166)
63 TIGR02653 Lon_rel_chp conserve 31.8 1.3E+02 0.0029 31.0 6.5 71 86-158 516-592 (675)
64 PRK11433 aldehyde oxidoreducta 30.3 52 0.0011 29.2 3.0 52 50-103 53-106 (217)
65 COG1120 FepC ABC-type cobalami 30.0 60 0.0013 29.4 3.4 99 44-158 52-156 (258)
66 COG1829 Predicted archaeal kin 29.4 3.3E+02 0.0071 25.2 8.1 96 86-192 41-150 (283)
67 PF06905 FAIM1: Fas apoptotic 29.0 38 0.00083 29.0 1.9 57 50-107 32-92 (177)
68 PF14475 Mso1_Sec1_bdg: Sec1-b 29.0 34 0.00073 22.7 1.2 11 212-222 21-31 (41)
69 COG4138 BtuD ABC-type cobalami 28.4 37 0.0008 30.1 1.7 26 42-67 46-72 (248)
70 COG3839 MalK ABC-type sugar tr 26.4 1.5E+02 0.0032 28.0 5.4 33 32-64 38-73 (338)
71 PF02601 Exonuc_VII_L: Exonucl 25.7 64 0.0014 29.1 2.9 50 109-158 55-106 (319)
72 COG0039 Mdh Malate/lactate deh 24.9 43 0.00094 31.2 1.6 55 95-159 185-242 (313)
73 cd03214 ABC_Iron-Siderophores_ 24.0 1.5E+02 0.0031 24.2 4.5 61 90-157 51-114 (180)
74 COG4525 TauB ABC-type taurine 24.0 3E+02 0.0065 24.9 6.6 32 28-59 35-70 (259)
75 PF05488 PAAR_motif: PAAR moti 24.0 65 0.0014 23.0 2.1 48 44-103 14-61 (76)
76 PF14453 ThiS-like: ThiS-like 23.9 1.1E+02 0.0024 21.5 3.2 14 50-63 2-15 (57)
77 TIGR00416 sms DNA repair prote 22.9 1.7E+02 0.0037 28.3 5.3 47 111-159 337-385 (454)
78 TIGR03140 AhpF alkyl hydropero 22.6 85 0.0018 30.4 3.3 23 128-150 210-232 (515)
79 COG1125 OpuBA ABC-type proline 22.3 68 0.0015 29.8 2.4 35 89-123 52-86 (309)
80 PF12637 TSCPD: TSCPD domain; 22.2 1.1E+02 0.0025 23.1 3.3 30 128-157 23-53 (95)
81 PF02120 Flg_hook: Flagellar h 21.8 37 0.00079 24.3 0.4 45 124-168 22-66 (85)
No 1
>PLN00210 40S ribosomal protein S16; Provisional
Probab=100.00 E-value=3.4e-46 Score=305.23 Aligned_cols=133 Identities=51% Similarity=0.886 Sum_probs=116.9
Q ss_pred cceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccccc
Q psy8077 26 IKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMI 105 (223)
Q Consensus 26 ~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Y 105 (223)
+++++++||||||+||||++||+|.|+|||+|+++||
T Consensus 2 ~~~~~~~GrRKta~Arv~~~~G~G~i~INg~~~~~y~------------------------------------------- 38 (141)
T PLN00210 2 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQ------------------------------------------- 38 (141)
T ss_pred CcceeeeccCCCceEEEEEECCCceEEECCCcHHHHC-------------------------------------------
Confidence 4679999999999999999999999888886666554
Q ss_pred CcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccccccc
Q psy8077 106 EPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGK 185 (223)
Q Consensus 106 f~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~r 185 (223)
++.+++++++||.+++.+.+++|||+|+|+|||.||||+||||||||||+.|++++.++..+..||+.|+.||++||+|
T Consensus 39 -~~~~r~~i~~Pl~~~~~~~~~~~Di~~~V~GGG~sgQa~Air~aiaraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLtr 117 (141)
T PLN00210 39 -PEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILLRYDRTLLVA 117 (141)
T ss_pred -CHHHHHHHHHHHHHhCccccCceeEEEEEEcCCHhHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHhccCCCccC
Confidence 4456677788888888655789999999999999999999999999999999987776666778999999999999999
Q ss_pred c-------cCCCcceeEEEecCcc
Q psy8077 186 D-------KFAGVDIRVRVNGGGH 202 (223)
Q Consensus 186 D-------K~G~~kARk~~Q~sKR 202 (223)
| |||++||||+||||||
T Consensus 118 D~R~~ERKK~G~~kARk~~Q~Skr 141 (141)
T PLN00210 118 DPRRCEPKKFGGRGARARFQKSYR 141 (141)
T ss_pred CchhhccCcCCccccccccccccC
Confidence 8 9999999999999998
No 2
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-46 Score=299.00 Aligned_cols=126 Identities=34% Similarity=0.478 Sum_probs=112.9
Q ss_pred eEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCc
Q psy8077 28 SVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEP 107 (223)
Q Consensus 28 ~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~ 107 (223)
++++|||||+|+|||||.||+|+|+|||+|+|+|||.
T Consensus 5 ~~~~tGkRK~AvArv~l~~g~G~i~vNg~~~e~yf~~------------------------------------------- 41 (130)
T COG0103 5 QVYTTGKRKSAVARVRLVPGKGKITVNGRPLELYFPR------------------------------------------- 41 (130)
T ss_pred eeeeeccccceEEEEEEEcCCcEEEECCcCHHHhcch-------------------------------------------
Confidence 7899999999999999999999999999888877751
Q ss_pred HHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccccccccc
Q psy8077 108 KLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDK 187 (223)
Q Consensus 108 ~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK 187 (223)
+.++++|++||.+++. .++|||.|+|+|||+||||+||||||||||++|++++++.|++. .|++.|++..||+|
T Consensus 42 e~~r~~i~~Pl~l~~~--~~~~Di~v~V~GGG~~GQA~AiR~gIaRAL~~~~~~lr~~lk~~----g~LtrD~R~~ErKK 115 (130)
T COG0103 42 ETLRMKIMQPLLLTGT--VGKFDIDVTVKGGGISGQAGAIRHGIARALVEYDPELRPALKKA----GLLTRDPRRVERKK 115 (130)
T ss_pred HHHHHHHhhhHHHhCc--cccccEEEEEecCCchHHHHHHHHHHHHHHHHHCHHHHHHHHHC----CCcccCcccccccc
Confidence 3456666677777776 48999999999999999999999999999999999999888776 38889999999999
Q ss_pred CCCcceeEEEecCcc
Q psy8077 188 FAGVDIRVRVNGGGH 202 (223)
Q Consensus 188 ~G~~kARk~~Q~sKR 202 (223)
||++|||+++|||||
T Consensus 116 ~G~~kARr~~Q~SkR 130 (130)
T COG0103 116 YGLKKARRRPQFSKR 130 (130)
T ss_pred ccccccccccccccC
Confidence 999999999999998
No 3
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=100.00 E-value=8.6e-46 Score=304.64 Aligned_cols=134 Identities=49% Similarity=0.761 Sum_probs=117.2
Q ss_pred ccceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 25 AIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 25 ~~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
.+++++++||||||+||||+++|+|+|+|||+|+++||
T Consensus 7 ~~~~v~~~GrRKtAiArv~l~~G~G~i~INg~~l~~y~------------------------------------------ 44 (147)
T PTZ00086 7 KLKQVQTFGKKKTAVAVALVTKGKGLIRVNGVPLDLIN------------------------------------------ 44 (147)
T ss_pred CCcceEEeeecCCceEEEEEEcCCceEEECCcCHHHhC------------------------------------------
Confidence 45689999999999999999999999888886666555
Q ss_pred cCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhccccccc
Q psy8077 105 IEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLG 184 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~ 184 (223)
++.+++.+++||.+++.+.+++|||+|+|+|||.||||+||||||||||+.|++.+.++..+..||+.|+.||++||+
T Consensus 45 --~~~~r~~i~~Pl~~~~~~~~~~~Di~i~V~GGG~sgQA~Air~aIaRAL~~~~~~~~~~~~r~~Lk~~~~~ydrglLt 122 (147)
T PTZ00086 45 --PETLRAKVFEPLLLVGKERFSRLDIRVRVRGGGQVAQAYAIRQAIAKGLVAYYQKYVDEATKAELKDKLLAYDRSLLV 122 (147)
T ss_pred --cHHHHHHHHHHHHHhCcCccCceeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhhccCCccc
Confidence 445677788888888765468999999999999999999999999999999988777777777899988888888888
Q ss_pred cc-------cCCCcceeEEEecCcc
Q psy8077 185 KD-------KFAGVDIRVRVNGGGH 202 (223)
Q Consensus 185 rD-------K~G~~kARk~~Q~sKR 202 (223)
|| |||++|||++||||||
T Consensus 123 rD~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
T PTZ00086 123 ADPRRCEPKKFGGPGARARFQKSYR 147 (147)
T ss_pred CCccccccCcCCCcccccccccccC
Confidence 88 9999999999999998
No 4
>CHL00079 rps9 ribosomal protein S9
Probab=100.00 E-value=4.7e-45 Score=294.96 Aligned_cols=127 Identities=23% Similarity=0.265 Sum_probs=113.2
Q ss_pred eEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCc
Q psy8077 28 SVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEP 107 (223)
Q Consensus 28 ~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~ 107 (223)
+++++||||||+||||++||+|+|+|||+|+++||++ +
T Consensus 4 ~~~~~GrRKta~Arv~l~~G~G~i~INg~~~~~yf~~------------------------------------------~ 41 (130)
T CHL00079 4 LYIGTGRRKTAVAQVRLVPGSGEIIINGKPAEEYLQY------------------------------------------N 41 (130)
T ss_pred EEEEEeeCCCeEEEEEEEcCCcEEEECCCcHHHHCCc------------------------------------------C
Confidence 5689999999999999999999998888777766642 1
Q ss_pred HHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccccccccc
Q psy8077 108 KLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDK 187 (223)
Q Consensus 108 ~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK 187 (223)
+.+++.|++||.+++. +++|||+|+|+|||.||||+||||||||||+.|+|++++.|++. .|++.|++++||+|
T Consensus 42 ~~~~~~v~~Pl~~~~~--~~~~Di~i~V~GGG~sgQa~Air~aIaraLv~~~~~~k~~Lk~~----glLtrD~R~~ERKK 115 (130)
T CHL00079 42 PNYLNAIKAPLKLLGL--ENKYDIIVKVKGGGLTGQAEAIRLGLARALCKINPENRKSLKKE----GFLTRDARIKERKK 115 (130)
T ss_pred HHHHHHHHHHHHHhCc--CCceeEEEEEEcCChhHHHHHHHHHHHHHHHHHCHHHHHHHHHc----CCcccCCcccccCc
Confidence 3456788999999997 58999999999999999999999999999999999998877654 68899999999999
Q ss_pred CCCcceeEEEecCcc
Q psy8077 188 FAGVDIRVRVNGGGH 202 (223)
Q Consensus 188 ~G~~kARk~~Q~sKR 202 (223)
||++||||+||||||
T Consensus 116 ~G~~kARk~~Q~SkR 130 (130)
T CHL00079 116 YGLKKARKAPQFSKR 130 (130)
T ss_pred CCCcccccccccCCC
Confidence 999999999999998
No 5
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=100.00 E-value=1.7e-44 Score=291.81 Aligned_cols=127 Identities=27% Similarity=0.351 Sum_probs=113.4
Q ss_pred ceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccC
Q psy8077 27 KSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIE 106 (223)
Q Consensus 27 ~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf 106 (223)
...+++||||||+|+||++||+|+|+|||+|+++||+.
T Consensus 4 ~~~~~~GrRK~a~A~v~l~~G~G~i~INg~~~~~yf~~------------------------------------------ 41 (130)
T PRK00132 4 VQYYGTGRRKTAVARVRLKPGSGKITVNGRDLEEYFPR------------------------------------------ 41 (130)
T ss_pred ceEEEEeeCCCeEEEEEEEcCccEEEECCEeHHHHcCC------------------------------------------
Confidence 35689999999999999999999988888776666532
Q ss_pred cHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhccccccccc
Q psy8077 107 PKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKD 186 (223)
Q Consensus 107 ~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rD 186 (223)
+.+++++++||.+++. +++|||+|+|+|||+||||+||||||||||+.|+|++++.|+.. .|++.|++..||+
T Consensus 42 -~~~r~~i~~Pl~~~~~--~~~~Di~i~V~GGG~sgQa~Air~aiaraLv~~~~~~r~~Lk~~----glLtrD~R~~ErK 114 (130)
T PRK00132 42 -ETLRMVVRQPLELTET--EGKFDVYVTVKGGGISGQAGAIRHGIARALLEYDPDLRPALKKA----GFLTRDARMVERK 114 (130)
T ss_pred -HHHHHHHHHHHHHhCc--cCceeEEEEEEcCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC----CCcccCchhhccC
Confidence 5678888899999987 49999999999999999999999999999999999998877764 6889999999999
Q ss_pred cCCCcceeEEEecCcc
Q psy8077 187 KFAGVDIRVRVNGGGH 202 (223)
Q Consensus 187 K~G~~kARk~~Q~sKR 202 (223)
|||++||||+||||||
T Consensus 115 K~G~~kARk~~q~skR 130 (130)
T PRK00132 115 KYGLKKARRAPQFSKR 130 (130)
T ss_pred cCCCcccccccccccC
Confidence 9999999999999998
No 6
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=100.00 E-value=1.6e-43 Score=287.43 Aligned_cols=130 Identities=36% Similarity=0.524 Sum_probs=105.1
Q ss_pred ceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccC
Q psy8077 27 KSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIE 106 (223)
Q Consensus 27 ~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf 106 (223)
+.++++||||||+|+||+.||+|.|+|||+|+++| |
T Consensus 3 ~~~~~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y--------------------------------------------~ 38 (134)
T PRK00474 3 KVVITSGKRKTAIARATIREGKGRVRINGVPLELI--------------------------------------------E 38 (134)
T ss_pred ceEEEEeeCCCeEEEEEEEcCceEEEECCEeHHHH--------------------------------------------C
Confidence 46889999999999999999999988888666655 4
Q ss_pred cHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHh--chhhhhhchhhhhhhhhhhccccccc
Q psy8077 107 PKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY--YQKCKQATGLLGTEKMLVKSTLTLLG 184 (223)
Q Consensus 107 ~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~--~~~~~~~~~~~~lk~~l~~~D~~lL~ 184 (223)
++.+++++++||.+++.+.+++|||+|+|+|||+||||+||||||||||+.| ++++++.+++.+ ..|++.|++..|
T Consensus 39 ~~~~r~~i~~Pl~~~~~~~~~~~di~i~V~GGG~sgQa~Air~aIaraL~~~~~~~~~r~~lk~~d--~glLtrD~R~~E 116 (134)
T PRK00474 39 PELARLKIMEPLILAGEDLRSKVDIDVNVEGGGIMGQADAARTAIARGLVEWTGDMELKDAFLAYD--RTLLVGDPRRTE 116 (134)
T ss_pred CHHHHHHHHHHHHHhCccccCCccEEEEEEcCChhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhc--CCCcccCchhhc
Confidence 4556777888888888333689999999999999999999999999999999 665554332200 145666666666
Q ss_pred cccCCCcceeEEEecCcc
Q psy8077 185 KDKFAGVDIRVRVNGGGH 202 (223)
Q Consensus 185 rDK~G~~kARk~~Q~sKR 202 (223)
|+|||++||||+||||||
T Consensus 117 RKK~G~~kARk~~Q~SkR 134 (134)
T PRK00474 117 PKKWGGKGARAKRQKSYR 134 (134)
T ss_pred cCcCCCccccccccccCC
Confidence 669999999999999998
No 7
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=100.00 E-value=2.4e-43 Score=285.03 Aligned_cols=126 Identities=33% Similarity=0.499 Sum_probs=104.5
Q ss_pred EEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCcH
Q psy8077 29 VQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPK 108 (223)
Q Consensus 29 ~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~ 108 (223)
++++||||||+|+||++||+|+|+|||+|+++| |++
T Consensus 2 ~~~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y--------------------------------------------~~~ 37 (130)
T TIGR03627 2 VITSGKRKTAIARATIREGKGRVRINGVPVELY--------------------------------------------PPE 37 (130)
T ss_pred eEEEeeCCCeEEEEEEEcCceEEEECCEeHHHh--------------------------------------------CCH
Confidence 678999999999999999999888888665554 445
Q ss_pred HHHHHHHhHHHHhC-CCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHh--chhhhhhchhhhhhhhhhhcccccccc
Q psy8077 109 LLQYKLQEPILLLG-KDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY--YQKCKQATGLLGTEKMLVKSTLTLLGK 185 (223)
Q Consensus 109 ~~r~~v~~PL~~~~-~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~--~~~~~~~~~~~~lk~~l~~~D~~lL~r 185 (223)
.+++.|++||.+++ . +++|||+|+|+|||+||||+||||||||||+.+ ++++++.++.. ...|++.|++..||
T Consensus 38 ~~r~~i~~Pl~~~~~~--~~~~Dv~i~V~GGG~sgQa~Air~aIaraL~~~~~~~~~r~~lk~~--d~glLtrD~R~~ER 113 (130)
T TIGR03627 38 LARLKIMEPLILAGDI--AKEVDIDVKVSGGGIMGQADAARTAIARGLVEFTGDKELRDAFRAY--DRTLLVNDPRRKEP 113 (130)
T ss_pred HHHHHHHHHHHHHhcc--ccCccEEEEEEcCChhHHHHHHHHHHHHHHHHhccCHHHHHHHHHh--cCCCccCCchhhcc
Confidence 67778888889996 4 489999999999999999999999999999999 56665433220 01577777777777
Q ss_pred ccCCCcceeEEEecCcc
Q psy8077 186 DKFAGVDIRVRVNGGGH 202 (223)
Q Consensus 186 DK~G~~kARk~~Q~sKR 202 (223)
+|||++||||+||||||
T Consensus 114 KK~G~~kARk~~Q~SkR 130 (130)
T TIGR03627 114 KKPGGRGARAKRQKSYR 130 (130)
T ss_pred CcCCCccccccccccCC
Confidence 79999999999999998
No 8
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=100.00 E-value=5.4e-43 Score=279.98 Aligned_cols=120 Identities=32% Similarity=0.440 Sum_probs=98.8
Q ss_pred ceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCc-HHHH
Q psy8077 33 GRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEP-KLLQ 111 (223)
Q Consensus 33 GrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~-~~~r 111 (223)
|+||||+|+||++||+|+|.|||+|++ +||+ ..++
T Consensus 1 GkRK~a~A~v~l~~G~G~i~INg~~l~--------------------------------------------~yf~~~~~r 36 (121)
T PF00380_consen 1 GKRKTAIARVWLKPGSGKIRINGKPLE--------------------------------------------EYFPNPYLR 36 (121)
T ss_dssp EEETTEEEEEEEEESSSEEEETTSEHH--------------------------------------------HHSSSTTTG
T ss_pred CCCceEEEEEEEEeCceEEEECCEEHH--------------------------------------------HhcCcHhHH
Confidence 677777777777777766666665554 4554 4678
Q ss_pred HHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhccccccccccCCCc
Q psy8077 112 YKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGV 191 (223)
Q Consensus 112 ~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~ 191 (223)
++|++||.+++. .++|||+|+|+|||.||||+||||||||||+.+++++++.|++. .|+..|++..||+|||++
T Consensus 37 ~~il~Pl~~~~~--~~~~di~~~V~GGG~~gQa~Air~aiaraL~~~~~~~~~~Lk~~----glLt~D~R~~ErKK~G~~ 110 (121)
T PF00380_consen 37 EKILEPLELTGT--LGKFDIFANVKGGGISGQAGAIRLAIARALVKFNPSLKPELKKA----GLLTRDPRRVERKKPGRK 110 (121)
T ss_dssp CCTTHHHHCTTT--STSEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHTTCHHHHCTT----TTTS-BS-S-SS-CTTSS
T ss_pred HHHHHHHHHhCc--CCeeeEEEEEecCcEeeehHHHHHHHHHHHHHHhHHHHHHHhhC----CceeecchhccccCCCCC
Confidence 889999999988 48999999999999999999999999999999999998887775 688999999999999999
Q ss_pred ceeEEEecCcc
Q psy8077 192 DIRVRVNGGGH 202 (223)
Q Consensus 192 kARk~~Q~sKR 202 (223)
|||++||||||
T Consensus 111 kARk~~q~skR 121 (121)
T PF00380_consen 111 KARKKPQWSKR 121 (121)
T ss_dssp SSSBSSCTST-
T ss_pred CcccccccccC
Confidence 99999999998
No 9
>KOG1697|consensus
Probab=100.00 E-value=4.3e-36 Score=263.50 Aligned_cols=126 Identities=24% Similarity=0.313 Sum_probs=113.3
Q ss_pred eEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCc
Q psy8077 28 SVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEP 107 (223)
Q Consensus 28 ~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~ 107 (223)
.+.++||||+|+|+|++.||+|+|.|||+++++||+.
T Consensus 150 ~~~~~g~rK~a~A~V~v~~GtGk~~vNg~~~~~yF~~------------------------------------------- 186 (275)
T KOG1697|consen 150 RIIAVGRRKCARATVKVQPGTGKFDVNGRDLDVYFQH------------------------------------------- 186 (275)
T ss_pred eeeeccceecceeEEEEecCceeEEecchhHHhHhcc-------------------------------------------
Confidence 7889999999999999999999888888666666542
Q ss_pred HHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccccccccc
Q psy8077 108 KLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDK 187 (223)
Q Consensus 108 ~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK 187 (223)
..+|+.++.||.+++. +++|||+++|+|||.|||++||+||||+||+.++|+++..++.+ .|++.|.+.+||+|
T Consensus 187 ~~~Re~ll~Pl~~~~~--lg~~dv~atv~GGG~sgqagAI~~gia~aL~~~~p~~~~~lr~a----GlLTrD~R~vERKK 260 (275)
T KOG1697|consen 187 LQHREQLLYPLAVSES--LGKYDVTATVSGGGPSGQAGAIRLGIAKALASFEPDLIEPLRLA----GLLTRDPRVVERKK 260 (275)
T ss_pred chhHHHHhhhHHHhcc--ccceeEEEEecCCCccchhHHHHHHHHHHHHhcCHHHhhHHHhc----CccccchHhhhhcc
Confidence 3478889999999988 69999999999999999999999999999999999998877665 68889999999999
Q ss_pred CCCcceeEEEecCcc
Q psy8077 188 FAGVDIRVRVNGGGH 202 (223)
Q Consensus 188 ~G~~kARk~~Q~sKR 202 (223)
+|++||||+|||+||
T Consensus 261 ~gq~kARkk~tW~KR 275 (275)
T KOG1697|consen 261 PGQPKARKKPTWKKR 275 (275)
T ss_pred CCccccccccccccC
Confidence 999999999999998
No 10
>KOG1753|consensus
Probab=100.00 E-value=4.1e-35 Score=235.15 Aligned_cols=137 Identities=60% Similarity=0.928 Sum_probs=123.4
Q ss_pred CCccccceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCc
Q psy8077 21 PPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGR 100 (223)
Q Consensus 21 ~~~~~~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~ 100 (223)
+++ ++++++++|++|||+|.++++.|+|.|+|||.|+|++.|++++.+++||+
T Consensus 2 ~s~-~~qSvq~fG~KK~AtAva~ck~G~glikvNg~ple~ie~~~L~~Kl~Epv-------------------------- 54 (145)
T KOG1753|consen 2 MSK-PLQSVQVFGRKKTATAVAHCKHGSGLIKVNGRPLELIEPEILRYKLLEPV-------------------------- 54 (145)
T ss_pred Ccc-cccceeeeccccceEEEEEeecCceEEEECCcchHhccHHHHHHHHhhhH--------------------------
Confidence 445 67899999999999999999999999999999999888776666655555
Q ss_pred cccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhccc
Q psy8077 101 PLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTL 180 (223)
Q Consensus 101 pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~ 180 (223)
.+++.+++..+||+|+|+|||.++|.+|||++||+||++|+.+|.|+.++.++|+.|+.||+
T Consensus 55 ------------------lllgk~rfa~vdi~v~~~ggghvsqiyairqa~~kalvayyqkyvDE~skkeiKd~li~yDr 116 (145)
T KOG1753|consen 55 ------------------LLLGKERFAGVDIRVRVKGGGHVSQIYAIRQAIAKALVAYYQKYVDEQSKKEIKDILIQYDR 116 (145)
T ss_pred ------------------hhhhhhhhCCCceEEEEecCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 45555567889999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-------cCCCcceeEEEecCcc
Q psy8077 181 TLLGKD-------KFAGVDIRVRVNGGGH 202 (223)
Q Consensus 181 ~lL~rD-------K~G~~kARk~~Q~sKR 202 (223)
++|+.| |||+++||+++|+|=|
T Consensus 117 tlLVADprr~esKKFGGpGAraryQksyr 145 (145)
T KOG1753|consen 117 TLLVADPRRCESKKFGGPGARARYQKSYR 145 (145)
T ss_pred eEEEcCcccccccccCCcchHHHhhhhcC
Confidence 999999 9999999999999854
No 11
>CHL00079 rps9 ribosomal protein S9
Probab=99.36 E-value=1.4e-12 Score=105.76 Aligned_cols=83 Identities=31% Similarity=0.338 Sum_probs=57.1
Q ss_pred hc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHH
Q psy8077 77 LG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKAL 155 (223)
Q Consensus 77 tG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL 155 (223)
+| +|+|+|+|++.+|+|+|+|||+|+++| +...+ ..+.-|
T Consensus 8 ~GrRKta~Arv~l~~G~G~i~INg~~~~~y--------------f~~~~---------------------~~~~~v---- 48 (130)
T CHL00079 8 TGRRKTAVAQVRLVPGSGEIIINGKPAEEY--------------LQYNP---------------------NYLNAI---- 48 (130)
T ss_pred EeeCCCeEEEEEEEcCCcEEEECCCcHHHH--------------CCcCH---------------------HHHHHH----
Confidence 56 899999999999999999999998866 11110 000000
Q ss_pred HHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhh
Q psy8077 156 VAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY 221 (223)
Q Consensus 156 ~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~ 221 (223)
+.| |..-+-.+...-.......+-++||+|||||||||||.|+
T Consensus 49 --~~P---------------------l~~~~~~~~~Di~i~V~GGG~sgQa~Air~aIaraLv~~~ 91 (130)
T CHL00079 49 --KAP---------------------LKLLGLENKYDIIVKVKGGGLTGQAEAIRLGLARALCKIN 91 (130)
T ss_pred --HHH---------------------HHHhCcCCceeEEEEEEcCChhHHHHHHHHHHHHHHHHHC
Confidence 001 0001113334556667788999999999999999999986
No 12
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2e-11 Score=98.69 Aligned_cols=83 Identities=42% Similarity=0.528 Sum_probs=58.8
Q ss_pred hhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHH
Q psy8077 76 LLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKA 154 (223)
Q Consensus 76 ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARa 154 (223)
-+| +|+|+|+|++++|+|+|+|||+|+++| .|.++.-. -|
T Consensus 8 ~tGkRK~AvArv~l~~g~G~i~vNg~~~e~y----------f~~e~~r~--------------------------~i--- 48 (130)
T COG0103 8 TTGKRKSAVARVRLVPGKGKITVNGRPLELY----------FPRETLRM--------------------------KI--- 48 (130)
T ss_pred eeccccceEEEEEEEcCCcEEEECCcCHHHh----------cchHHHHH--------------------------HH---
Confidence 366 799999999999999999999999866 12221110 00
Q ss_pred HHHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhh
Q psy8077 155 LVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY 221 (223)
Q Consensus 155 L~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~ 221 (223)
..| -+|+-+ .+.-...-.....+-++||+|||+|||||||.|+
T Consensus 49 ---~~P--------------------l~l~~~-~~~~Di~v~V~GGG~~GQA~AiR~gIaRAL~~~~ 91 (130)
T COG0103 49 ---MQP--------------------LLLTGT-VGKFDIDVTVKGGGISGQAGAIRHGIARALVEYD 91 (130)
T ss_pred ---hhh--------------------HHHhCc-cccccEEEEEecCCchHHHHHHHHHHHHHHHHHC
Confidence 001 111111 3444667777888889999999999999999996
No 13
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=99.20 E-value=3.5e-11 Score=96.55 Aligned_cols=37 Identities=41% Similarity=0.536 Sum_probs=31.7
Q ss_pred ccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhhc
Q psy8077 186 DKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQ 222 (223)
Q Consensus 186 DK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~~ 222 (223)
+.++...-...-..++-++||+||||||||||+.|+.
T Consensus 47 ~~~~~~di~~~V~GGG~~gQa~Air~aiaraL~~~~~ 83 (121)
T PF00380_consen 47 GTLGKFDIFANVKGGGISGQAGAIRLAIARALVKFNP 83 (121)
T ss_dssp TTSTSEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCeeeEEEEEecCcEeeehHHHHHHHHHHHHHHhH
Confidence 3356667777788999999999999999999999985
No 14
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=99.16 E-value=6e-11 Score=96.35 Aligned_cols=29 Identities=41% Similarity=0.574 Sum_probs=26.8
Q ss_pred hc-ccccceeEEEecCcceEEEcCcccccc
Q psy8077 77 LG-TKSATAVAYCKEGKGNLRVDGRPLEMI 105 (223)
Q Consensus 77 tG-rKta~A~v~~v~G~G~I~VNg~pl~~Y 105 (223)
+| +|+|+|+|++.+|+|+|+|||+|+++|
T Consensus 9 ~GrRK~a~A~v~l~~G~G~i~INg~~~~~y 38 (130)
T PRK00132 9 TGRRKTAVARVRLKPGSGKITVNGRDLEEY 38 (130)
T ss_pred EeeCCCeEEEEEEEcCccEEEECCEeHHHH
Confidence 56 899999999999999999999998766
No 15
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=98.38 E-value=4.8e-07 Score=73.94 Aligned_cols=36 Identities=42% Similarity=0.546 Sum_probs=30.7
Q ss_pred cCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhhc
Q psy8077 187 KFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQ 222 (223)
Q Consensus 187 K~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~~ 222 (223)
..+...........+-++||+|||||||+|||.|+.
T Consensus 57 ~~~~~di~i~V~GGG~sgQa~Air~aIaraL~~~~~ 92 (134)
T PRK00474 57 LRSKVDIDVNVEGGGIMGQADAARTAIARGLVEWTG 92 (134)
T ss_pred ccCCccEEEEEEcCChhHHHHHHHHHHHHHHHHhcc
Confidence 455567777788899999999999999999999953
No 16
>PLN00210 40S ribosomal protein S16; Provisional
Probab=98.36 E-value=2.1e-06 Score=70.77 Aligned_cols=89 Identities=54% Similarity=1.006 Sum_probs=61.3
Q ss_pred hhhhhhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHH
Q psy8077 72 EPILLLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQA 150 (223)
Q Consensus 72 ~PL~ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~a 150 (223)
+++..+| +|+|+|+|++.+|+|+|+|||+|++ ...|.. .+.-
T Consensus 3 ~~~~~~GrRKta~Arv~~~~G~G~i~INg~~~~----------~y~~~~---------------------------~r~~ 45 (141)
T PLN00210 3 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE----------LVQPEI---------------------------LRFK 45 (141)
T ss_pred cceeeeccCCCceEEEEEECCCceEEECCCcHH----------HHCCHH---------------------------HHHH
Confidence 4556678 7999999999999999999999964 112211 1111
Q ss_pred HHHHHHHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhhc
Q psy8077 151 ISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQ 222 (223)
Q Consensus 151 IARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~~ 222 (223)
|-.-|. ++..+.++...-.......+-++||+|||+|||||||.|+.
T Consensus 46 i~~Pl~-------------------------~~~~~~~~~~Di~~~V~GGG~sgQa~Air~aiaraL~~~~~ 92 (141)
T PLN00210 46 AFEPIL-------------------------LLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQ 92 (141)
T ss_pred HHHHHH-------------------------HhCccccCceeEEEEEEcCCHhHHHHHHHHHHHHHHHHhcc
Confidence 111111 11122344446677778899999999999999999999964
No 17
>KOG1697|consensus
Probab=98.23 E-value=3.1e-06 Score=75.57 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=25.9
Q ss_pred ccccceeEEEecCcceEEEcCcccccc
Q psy8077 79 TKSATAVAYCKEGKGNLRVDGRPLEMI 105 (223)
Q Consensus 79 rKta~A~v~~v~G~G~I~VNg~pl~~Y 105 (223)
+|++.|.|++.+|+|+|.|||+++++|
T Consensus 157 rK~a~A~V~v~~GtGk~~vNg~~~~~y 183 (275)
T KOG1697|consen 157 RKCARATVKVQPGTGKFDVNGRDLDVY 183 (275)
T ss_pred eecceeEEEEecCceeEEecchhHHhH
Confidence 799999999999999999999999877
No 18
>KOG1753|consensus
Probab=98.22 E-value=8.6e-07 Score=72.08 Aligned_cols=90 Identities=68% Similarity=1.139 Sum_probs=72.1
Q ss_pred hhhhhhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHH
Q psy8077 72 EPILLLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQA 150 (223)
Q Consensus 72 ~PL~ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~a 150 (223)
+-..+-| +|+++|++.|..|+|.|.|||.|++.+.|..++.+++ |
T Consensus 7 qSvq~fG~KK~AtAva~ck~G~glikvNg~ple~ie~~~L~~Kl~--------E-------------------------- 52 (145)
T KOG1753|consen 7 QSVQVFGRKKTATAVAHCKHGSGLIKVNGRPLELIEPEILRYKLL--------E-------------------------- 52 (145)
T ss_pred cceeeeccccceEEEEEeecCceEEEECCcchHhccHHHHHHHHh--------h--------------------------
Confidence 3344557 7999999999999999999999999887765555431 1
Q ss_pred HHHHHHHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhhcC
Q psy8077 151 ISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK 223 (223)
Q Consensus 151 IARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~~~ 223 (223)
| --+|.-++|-...-|-+-...++|||+|||||+||||||+||+|
T Consensus 53 ---------p-------------------vlllgk~rfa~vdi~v~~~ggghvsqiyairqa~~kalvayyqk 97 (145)
T KOG1753|consen 53 ---------P-------------------VLLLGKERFAGVDIRVRVKGGGHVSQIYAIRQAIAKALVAYYQK 97 (145)
T ss_pred ---------h-------------------HhhhhhhhhCCCceEEEEecCchHHHHHHHHHHhhHHHHHHHHH
Confidence 1 01344557778888999999999999999999999999999974
No 19
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=98.18 E-value=3.1e-06 Score=70.22 Aligned_cols=87 Identities=54% Similarity=0.886 Sum_probs=58.3
Q ss_pred hhhhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHH
Q psy8077 74 ILLLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAIS 152 (223)
Q Consensus 74 L~ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIA 152 (223)
+..+| +|+|+|+|++.+|+|+|+|||+|++ ...| .. .+.-|-
T Consensus 11 v~~~GrRKtAiArv~l~~G~G~i~INg~~l~----------~y~~-~~--------------------------~r~~i~ 53 (147)
T PTZ00086 11 VQTFGKKKTAVAVALVTKGKGLIRVNGVPLD----------LINP-ET--------------------------LRAKVF 53 (147)
T ss_pred eEEeeecCCceEEEEEEcCCceEEECCcCHH----------HhCc-HH--------------------------HHHHHH
Confidence 33466 8999999999999999999999974 1122 11 111111
Q ss_pred HHHHHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhhc
Q psy8077 153 KALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQ 222 (223)
Q Consensus 153 RaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~~ 222 (223)
.-|.. +..+-.+...........+-++||+|||+|||||||.|+.
T Consensus 54 ~Pl~~-------------------------~~~~~~~~~Di~i~V~GGG~sgQA~Air~aIaRAL~~~~~ 98 (147)
T PTZ00086 54 EPLLL-------------------------VGKERFSRLDIRVRVRGGGQVAQAYAIRQAIAKGLVAYYQ 98 (147)
T ss_pred HHHHH-------------------------hCcCccCceeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 11110 1111234445666777899999999999999999999963
No 20
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=98.16 E-value=3.5e-06 Score=68.58 Aligned_cols=33 Identities=45% Similarity=0.681 Sum_probs=27.7
Q ss_pred CCcceeEEEecCcchhhhHHHHHHHHHHHHhhh
Q psy8077 189 AGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY 221 (223)
Q Consensus 189 G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~ 221 (223)
+...........+-++||+|||+|||+||+.|+
T Consensus 55 ~~~Dv~i~V~GGG~sgQa~Air~aIaraL~~~~ 87 (130)
T TIGR03627 55 KEVDIDVKVSGGGIMGQADAARTAIARGLVEFT 87 (130)
T ss_pred cCccEEEEEEcCChhHHHHHHHHHHHHHHHHhc
Confidence 334556667788999999999999999999985
No 21
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=87.90 E-value=0.53 Score=46.80 Aligned_cols=96 Identities=22% Similarity=0.323 Sum_probs=59.3
Q ss_pred EEcCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHH
Q psy8077 44 CKEGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPIL 119 (223)
Q Consensus 44 l~~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~ 119 (223)
++|..|.|+|||.|+.+.-++.+++++. .|.+..|+-. ..+-.+-+....+.+.+-++
T Consensus 371 ~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir------------------eNi~l~~~~~s~e~i~~al~ 432 (559)
T COG4988 371 LAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR------------------ENILLARPDASDEEIIAALD 432 (559)
T ss_pred CCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHH------------------HHhhccCCcCCHHHHHHHHH
Confidence 3457799999999999999888887754 4555443210 01111222223444555454
Q ss_pred HhCCCC----CceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 120 LLGKDK----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 120 ~~~~~~----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
..+... -+.+|-.+--.|-|+|| =+|-|+|+||||+.-
T Consensus 433 ~a~l~~~v~~p~GLdt~ige~G~~LSg-GQ~QRlaLARAll~~ 474 (559)
T COG4988 433 QAGLLEFVPKPDGLDTVIGEGGAGLSG-GQAQRLALARALLSP 474 (559)
T ss_pred HhcHHHhhcCCCcccchhccCCCCCCH-HHHHHHHHHHHhcCC
Confidence 443211 14567777778888885 347899999999864
No 22
>KOG0058|consensus
Probab=82.29 E-value=1 Score=45.95 Aligned_cols=66 Identities=33% Similarity=0.472 Sum_probs=46.9
Q ss_pred cCcceEEEcCccccccCcHHHHHHH----HhHHHHhCC-------------------------------CCCceecEEEE
Q psy8077 90 EGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGK-------------------------------DKFAGVDIRVR 134 (223)
Q Consensus 90 ~G~G~I~VNg~pl~~Yf~~~~r~~v----~~PL~~~~~-------------------------------~~~~~~DI~i~ 134 (223)
|-+|.|.++|+|+.+|.+..+|.+| .||..+.++ +--..||-.|=
T Consensus 520 PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG 599 (716)
T KOG0058|consen 520 PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVG 599 (716)
T ss_pred CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 5689999999999999987777664 445544321 00257888887
Q ss_pred ecCCCccc-HHHHHHHHHHHHHHH
Q psy8077 135 VNGGGHVA-QIYAIRQAISKALVA 157 (223)
Q Consensus 135 V~GGG~sg-QA~AIr~aIARaL~~ 157 (223)
-+|-=+|| |-+ |.||||||+.
T Consensus 600 EkG~qLSGGQKQ--RIAIARALlr 621 (716)
T KOG0058|consen 600 EKGSQLSGGQKQ--RIAIARALLR 621 (716)
T ss_pred CccccccchHHH--HHHHHHHHhc
Confidence 78755553 544 6799999986
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=79.36 E-value=2.6 Score=37.29 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=60.4
Q ss_pred EEcCceeEEEcCccccccCc-H--HHHHH---HhhhhhhhcccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhH
Q psy8077 44 CKEGKGNLRVDGRPLEMIEP-K--LLQYK---LQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEP 117 (223)
Q Consensus 44 l~~G~G~i~VNg~p~e~yf~-~--~~r~~---i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~P 117 (223)
.+|-+|+|.+||.++..+-. + ++|.. +.|=+.++-.++....|.+- ..| .-+-+...+..+.+-
T Consensus 52 e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p-----L~v-----~G~~~~~i~~rV~~~ 121 (223)
T COG2884 52 ERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP-----LRV-----IGKPPREIRRRVSEV 121 (223)
T ss_pred hcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh-----hhc-----cCCCHHHHHHHHHHH
Confidence 35788999999999887765 2 45543 34555555555555555432 001 112345678889999
Q ss_pred HHHhCCCCCceecEEEEe-cCCCcccHHHHHHHHHHHHHHHh
Q psy8077 118 ILLLGKDKFAGVDIRVRV-NGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 118 L~~~~~~~~~~~DI~i~V-~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
|..+|+. .+-+..=.. +|| +-=|.|||||++.-
T Consensus 122 L~~VgL~--~k~~~lP~~LSGG------EQQRvaIARAiV~~ 155 (223)
T COG2884 122 LDLVGLK--HKARALPSQLSGG------EQQRVAIARAIVNQ 155 (223)
T ss_pred HHHhccc--hhhhcCccccCch------HHHHHHHHHHHccC
Confidence 9999874 444333333 444 34588999999864
No 24
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=75.82 E-value=2.6 Score=40.53 Aligned_cols=106 Identities=23% Similarity=0.278 Sum_probs=57.0
Q ss_pred eceeeeEEEEEE---EEcCceeEEEcCccccccCcHHHHHHH----hhhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAY---CKEGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~---l~~G~G~i~VNg~p~e~yf~~~~r~~i----~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
+|.=||.++..- ..|-+|.|.+||.|+.++ ++.+|..+ .+|.+..|+=. .+|...+
T Consensus 370 SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~-----------eNI~~g~----- 432 (529)
T TIGR02868 370 SGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVR-----------DNLRLGR----- 432 (529)
T ss_pred CCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHH-----------HHHhccC-----
Confidence 444455554443 246779999999999999 86666553 24444433100 0111111
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+....+++.+-+...+.+. -..||-.+--+|..+||= +.=|.||||||++
T Consensus 433 --~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG-QrQRiaiARall~ 487 (529)
T TIGR02868 433 --PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG-ERQRLALARALLA 487 (529)
T ss_pred --CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH-HHHHHHHHHHHhc
Confidence 1111222333333332210 146787776666666643 4559999999997
No 25
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=72.72 E-value=11 Score=36.93 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=22.1
Q ss_pred ceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 127 AGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 127 ~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+.+|-.+.-.|..+|| -+.=|.+|||||+.
T Consensus 464 ~Gldt~i~e~g~~LSG-GqrQRialARaLl~ 493 (592)
T PRK10790 464 DGLYTPLGEQGNNLSV-GQKQLLALARVLVQ 493 (592)
T ss_pred ccccccccCCCCCCCH-HHHHHHHHHHHHHh
Confidence 4577776666666665 35678999999997
No 26
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=70.62 E-value=7 Score=38.05 Aligned_cols=108 Identities=22% Similarity=0.251 Sum_probs=60.1
Q ss_pred eceeeeEEEEEEE---EcCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAYC---KEGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~l---~~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
+|-=|+.++..-+ .|-+|.|.|||.|+..+..+.+|..+- +|.+.-|+ |.=|=....+
T Consensus 364 sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~T---------------I~~NI~~g~~ 428 (567)
T COG1132 364 SGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGT---------------IRENIALGRP 428 (567)
T ss_pred CCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeeccc---------------HHHHHhcCCC
Confidence 5666766554433 256899999999999999987877765 33333221 1101011111
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
+.+ .+++.+-+...+.+. -+.||-.+- .+|..-+.=+--|++|||||+.-
T Consensus 429 ~at---~eei~~a~k~a~~~d~I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 429 DAT---DEEIEEALKLANAHEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred CCC---HHHHHHHHHHhChHHHHHhCcccccceec-CCCccCCHHHHHHHHHHHHHhcC
Confidence 121 123333333222100 136888877 44444444567799999999875
No 27
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=68.83 E-value=5.9 Score=33.42 Aligned_cols=53 Identities=32% Similarity=0.584 Sum_probs=38.6
Q ss_pred eEEEcCccccc-cCc-HHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 50 NLRVDGRPLEM-IEP-KLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 50 ~i~VNg~p~e~-yf~-~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
.++|||.+.+. ..| ..+...+.+.|-++|+|..-....+ |.-.|.|||++...
T Consensus 5 ~ltvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~C--GACtVlvDG~~v~S 59 (156)
T COG2080 5 TLTVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQC--GACTVLVDGEAVNS 59 (156)
T ss_pred EEEECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccC--CceEEEECCeEehH
Confidence 47899999994 446 4666777789999998866544332 55588999998753
No 28
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=68.14 E-value=3 Score=45.82 Aligned_cols=69 Identities=20% Similarity=0.154 Sum_probs=43.1
Q ss_pred EecCcceEEEcCccccccCcHHHHHH------------------------------HHhHHHHhCCCC-----CceecEE
Q psy8077 88 CKEGKGNLRVDGRPLEMIEPKLLQYK------------------------------LQEPILLLGKDK-----FAGVDIR 132 (223)
Q Consensus 88 ~v~G~G~I~VNg~pl~~Yf~~~~r~~------------------------------v~~PL~~~~~~~-----~~~~DI~ 132 (223)
..+-+|.|+|||+++.+|-...+|.. |.+-+...+.+. -..||-.
T Consensus 1272 ~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~ 1351 (1466)
T PTZ00265 1272 VFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTN 1351 (1466)
T ss_pred cCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCc
Confidence 34679999999999987643322222 222222222110 1467777
Q ss_pred EEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 133 VRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 133 i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+--+|..+|| =+.=|.||||||+.
T Consensus 1352 VGe~G~~LSG-GQkQRIaIARALlr 1375 (1466)
T PTZ00265 1352 VGPYGKSLSG-GQKQRIAIARALLR 1375 (1466)
T ss_pred cCCCCCcCCH-HHHHHHHHHHHHhc
Confidence 7666777775 45679999999997
No 29
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=67.36 E-value=9.1 Score=38.33 Aligned_cols=107 Identities=24% Similarity=0.244 Sum_probs=58.7
Q ss_pred eceeeeEEEEEEE---EcCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAYC---KEGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~l---~~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
+|-=||.+++.-+ .|-+|.|.+||.|++++-++.+|..+- +|.+..|+-. .+|...+
T Consensus 514 sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~-----------eNi~l~~----- 577 (710)
T TIGR03796 514 SGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR-----------DNLTLWD----- 577 (710)
T ss_pred CCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH-----------HHhhCCC-----
Confidence 4555665554432 477899999999999988766665542 4444433110 0111111
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+....+.+.+-+...+.+. -..||-.+--.|..+|| =+-=|.||||||+.
T Consensus 578 --~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG-GQrQRiaLARall~ 632 (710)
T TIGR03796 578 --PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG-GQRQRLEIARALVR 632 (710)
T ss_pred --CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH-HHHHHHHHHHHHhh
Confidence 1111122222223222110 14678777767777765 34668899999987
No 30
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=67.18 E-value=13 Score=38.42 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=55.9
Q ss_pred eEEEcCccccccCc-HHHH-H---HHhhhhhhhcc-------cccceeEEEecCcceEEEcCccccccCcHHH---HHHH
Q psy8077 50 NLRVDGRPLEMIEP-KLLQ-Y---KLQEPILLLGT-------KSATAVAYCKEGKGNLRVDGRPLEMIEPKLL---QYKL 114 (223)
Q Consensus 50 ~i~VNg~p~e~yf~-~~~r-~---~i~~PL~ltGr-------Kta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~---r~~v 114 (223)
.+.|+-..++.|.. +... . .-..|=.++|- ..-.=.+...+|+|++.++| .+.+...+.. ..-+
T Consensus 567 ~v~v~~~~~~~~lg~~~~~~~~~~~~~~~G~~~gla~t~~gg~~l~iE~~~~~g~g~~~~tG-~lg~vmkes~~~A~~~~ 645 (784)
T PRK10787 567 HIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTG-SLGEVMQESIQAALTVV 645 (784)
T ss_pred eeeecHHHHHHHhCCCccccchhhcCCCceEEEEeEEeCCCeEEEEEEEEEecCCceEEEec-CcHHHHHHHHHHHHHHH
Confidence 47888888888875 3111 1 11222222221 11111233568999999999 5555544221 1111
Q ss_pred HhHHHHhC--CCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 115 QEPILLLG--KDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 115 ~~PL~~~~--~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
..=...++ .+.+.++||+++|.||....---+.=+|++-||+..
T Consensus 646 ~~~~~~~~~~~~~~~~~Di~i~v~~g~~~~dgpsagla~~~Al~S~ 691 (784)
T PRK10787 646 RARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSC 691 (784)
T ss_pred HHHHHHcCCCcccccCceEEEEecCCCCCCCCCchHHHHHHHHHHH
Confidence 11111222 222468899999999866533234555666666654
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=66.26 E-value=7.3 Score=43.39 Aligned_cols=107 Identities=22% Similarity=0.233 Sum_probs=59.2
Q ss_pred eceeeeEEEEEEE---EcCceeEEEcCccccccCcHHHHHHH----hhhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAYC---KEGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~l---~~G~G~i~VNg~p~e~yf~~~~r~~i----~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
||-=|++++.+-+ .|-+|.|.|||.|+..+-.+.+|..+ .+|.+..|+ |.=|=.|..+
T Consensus 1274 SGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GT---------------IreNLd~~~~ 1338 (1622)
T PLN03130 1274 TGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGT---------------VRFNLDPFNE 1338 (1622)
T ss_pred CCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcccccc---------------HHHHhCcCCC
Confidence 4444555544432 46779999999999999777777654 366665542 2112122222
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
+ ++ +.+.+-++..+... -..+|-.+.-.|..+| .=+-=|++|||||+.-
T Consensus 1339 ~-td---eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLS-gGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1339 H-ND---ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFS-VGQRQLLSLARALLRR 1392 (1622)
T ss_pred C-CH---HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCC-HHHHHHHHHHHHHHcC
Confidence 2 22 22222222222100 1467766655444455 3456688999999974
No 32
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=65.50 E-value=8.8 Score=37.42 Aligned_cols=93 Identities=25% Similarity=0.342 Sum_probs=51.1
Q ss_pred cCceeEEEcCccccccCcHHHHHHH----hhhhhhhcccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHh
Q psy8077 46 EGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLL 121 (223)
Q Consensus 46 ~G~G~i~VNg~p~e~yf~~~~r~~i----~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~ 121 (223)
|=+|.|.+||.|++++-++.+|..+ .+|.+..|+=. .+|+.. .| +...+++.+-+...
T Consensus 401 p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~-----------eNI~~g-~~------~~~~eei~~al~~a 462 (588)
T PRK11174 401 PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR-----------DNVLLG-NP------DASDEQLQQALENA 462 (588)
T ss_pred CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH-----------HHhhcC-CC------CCCHHHHHHHHHHh
Confidence 5578999999999999887666554 23443332100 012221 11 11112222222222
Q ss_pred CCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 122 GKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 122 ~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+.+. -..||-.+--+|..+||= +-=|.||||||+.
T Consensus 463 ~l~~~i~~lp~G~dT~vge~G~~LSGG-QrQRialARAll~ 502 (588)
T PRK11174 463 WVSEFLPLLPQGLDTPIGDQAAGLSVG-QAQRLALARALLQ 502 (588)
T ss_pred CHHHHHHhcccccccccccCCCCCCHH-HHHHHHHHHHHhc
Confidence 2110 146787776677777742 3668999999997
No 33
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=65.00 E-value=8.8 Score=42.38 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=60.8
Q ss_pred eceeeeEEEEEEE---EcCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAYC---KEGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~l---~~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
||-=|+++...-+ .|-+|.|.|||.|+..+-.+.+|..+- +|++..|+ |+=|=.|..+
T Consensus 1321 TGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gT---------------Ir~NLdp~~~ 1385 (1522)
T TIGR00957 1321 TGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGS---------------LRMNLDPFSQ 1385 (1522)
T ss_pred CCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCcc---------------HHHHcCcccC
Confidence 4444555443332 356699999999999998877776643 56655442 2212122222
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
|- + +.+.+-+...+... -+.+|-.+.-.|..+|| =+-=|++|||||+.-
T Consensus 1386 ~s-d---eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg-GQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1386 YS-D---EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV-GQRQLVCLARALLRK 1439 (1522)
T ss_pred CC-H---HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH-HHHHHHHHHHHHHcC
Confidence 22 1 22333333332210 15678777666666664 345588999999973
No 34
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=64.06 E-value=7.8 Score=38.84 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=57.0
Q ss_pred eceeeeEEEEEEE---EcCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAYC---KEGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~l---~~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
+|-=||.+++.-+ .|-+|.|.+||.|+.++-++.+|..+- +|.+..|+= ..+|+.+..|
T Consensus 509 SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI-----------~eNi~l~~~~--- 574 (708)
T TIGR01193 509 SGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI-----------LENLLLGAKE--- 574 (708)
T ss_pred CCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHH-----------HHHHhccCCC---
Confidence 4445665555432 467799999999999887766665532 333222210 0122222111
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
-.+ .+.+.+-+...+.+. -..||..+--.|..+|| =+.=|.+|||||+.
T Consensus 575 ~~~---~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSg-GQrQRialARall~ 628 (708)
T TIGR01193 575 NVS---QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISG-GQKQRIALARALLT 628 (708)
T ss_pred CCC---HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCH-HHHHHHHHHHHHhh
Confidence 011 122222233222110 14678777666666664 34568899999997
No 35
>PLN03232 ABC transporter C family member; Provisional
Probab=62.53 E-value=11 Score=41.61 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=59.5
Q ss_pred eceeeeEEEEEEE---EcCceeEEEcCccccccCcHHHHHHH----hhhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAYC---KEGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~l---~~G~G~i~VNg~p~e~yf~~~~r~~i----~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
+|-=|+.++..-+ .|-+|.|.|||.|+..+-.+.+|..+ .+|.+..| .|.=|=.|..+
T Consensus 1271 SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g---------------TIr~NL~~~~~ 1335 (1495)
T PLN03232 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG---------------TVRFNIDPFSE 1335 (1495)
T ss_pred CCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc---------------cHHHHcCCCCC
Confidence 4445555544432 46779999999999999877676654 24544433 12212122222
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
+ ++ +++.+-+...+.+. -..+|-.+--.|..+|| =+-=|++|||||+.-
T Consensus 1336 ~-sd---eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg-GQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1336 H-ND---ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSV-GQRQLLSLARALLRR 1389 (1495)
T ss_pred C-CH---HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCH-HHHHHHHHHHHHHhC
Confidence 2 22 22333333322210 14678776666666663 345688999999973
No 36
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=59.44 E-value=15 Score=32.47 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=47.6
Q ss_pred EEEcCceeEEEcCc----------cccccCcH---HHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCcHH
Q psy8077 43 YCKEGKGNLRVDGR----------PLEMIEPK---LLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKL 109 (223)
Q Consensus 43 ~l~~G~G~i~VNg~----------p~e~yf~~---~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~ 109 (223)
+..|.+|.|.|||. |++..|+| +....+.+-+- =| ..-..-.+..
T Consensus 48 F~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig----------------LG------l~P~LkL~a~ 105 (231)
T COG3840 48 FETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG----------------LG------LSPGLKLNAE 105 (231)
T ss_pred ccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc----------------cc------CCcccccCHH
Confidence 57799999999995 55666664 11222222111 11 2222223456
Q ss_pred HHHHHHhHHHHhCCCCCceecEEE--EecCCCcccHHHHHHHHHHHHHHHhch
Q psy8077 110 LQYKLQEPILLLGKDKFAGVDIRV--RVNGGGHVAQIYAIRQAISKALVAYYQ 160 (223)
Q Consensus 110 ~r~~v~~PL~~~~~~~~~~~DI~i--~V~GGG~sgQA~AIr~aIARaL~~~~~ 160 (223)
.|+++-.-+.-+|.. .|.=.. ..+|| | ==|-|+||||+.-.|
T Consensus 106 ~r~~v~~aa~~vGl~---~~~~RLP~~LSGG----q--RQRvALARclvR~~P 149 (231)
T COG3840 106 QREKVEAAAAQVGLA---GFLKRLPGELSGG----Q--RQRVALARCLVREQP 149 (231)
T ss_pred HHHHHHHHHHHhChh---hHhhhCccccCch----H--HHHHHHHHHHhccCC
Confidence 788887777766653 221111 12232 2 347799999998654
No 37
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=58.51 E-value=23 Score=35.66 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=55.6
Q ss_pred EEEecCcceEEEcCcccccc-CcHHHHHHHHhHHHHhCCCCCceecEEEEecC-----CCcccHHHHHHHHHHHHHHHhc
Q psy8077 86 AYCKEGKGNLRVDGRPLEMI-EPKLLQYKLQEPILLLGKDKFAGVDIRVRVNG-----GGHVAQIYAIRQAISKALVAYY 159 (223)
Q Consensus 86 v~~v~G~G~I~VNg~pl~~Y-f~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~G-----GG~sgQA~AIr~aIARaL~~~~ 159 (223)
|.+.||.|.+.|-+-|+++. +....|.....-+.++|.+ ..+||+++.|+- ||+|+ -+++-.|+=-+|.-|+
T Consensus 56 vtv~pG~G~v~v~t~P~t~~d~~~SArvAa~~A~~~~Gvd-~ssyd~~i~v~a~~pVVGgPSa-gg~mtva~~~~~~~~~ 133 (579)
T COG1750 56 VTVTPGDGRVYVATFPYTQIDMQGSARVAAGVALRLAGVD-MSSYDVYIAVEADSPVVGGPSA-GGYMTVAIYAALMGWS 133 (579)
T ss_pred eeecCCCceEEeecCCCchhccchhhHHHHHHHHHhhCCC-ccceeEEEEEecCCCeecCccc-chHhHHHHHHHHhCCC
Confidence 33479999999999999988 6677888888899999987 799999999964 56663 2356666666665554
No 38
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=57.76 E-value=14 Score=34.12 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=61.6
Q ss_pred eceeeeEEEEE---EEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhc---ccccceeEEEecCcceEEEcCcccccc
Q psy8077 32 FGRKKSATAVA---YCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLG---TKSATAVAYCKEGKGNLRVDGRPLEMI 105 (223)
Q Consensus 32 tGrRKtAvArv---~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltG---rKta~A~v~~v~G~G~I~VNg~pl~~Y 105 (223)
+|.=||.+=+. -+.|-+|.|.|||+++..+-+..+|..|=.-++-.| .-|....+.++|- +.-|
T Consensus 36 SGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~----------L~~w 105 (309)
T COG1125 36 SGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK----------LLGW 105 (309)
T ss_pred CCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh----------hcCC
Confidence 57777754332 256889999999999999988667777766655555 2222222222221 1112
Q ss_pred CcHHHHHHHHhHHHHhCCCCCceec-EE-EEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 106 EPKLLQYKLQEPILLLGKDKFAGVD-IR-VRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 106 f~~~~r~~v~~PL~~~~~~~~~~~D-I~-i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
-.......+.+=|.+.+++. ..|- =. --.+|| +.=|-||+|||.+
T Consensus 106 ~k~~i~~r~~ELl~lvgL~p-~~~~~RyP~eLSGG------QQQRVGv~RALAa 152 (309)
T COG1125 106 DKERIKKRADELLDLVGLDP-SEYADRYPHELSGG------QQQRVGVARALAA 152 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCH-HHHhhcCchhcCcc------hhhHHHHHHHHhc
Confidence 22344555666666666541 1110 00 012333 2458899999976
No 39
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=57.64 E-value=13 Score=37.66 Aligned_cols=107 Identities=24% Similarity=0.307 Sum_probs=54.4
Q ss_pred eceeeeEEEEEE---EEcCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAY---CKEGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~---l~~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
+|.=||.+++.- ..|-+|.|.+||.|+.+|-++.++..+. +|.+..|+= ..+|..+..+
T Consensus 516 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTI-----------reNI~~g~~~--- 581 (711)
T TIGR00958 516 SGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV-----------RENIAYGLTD--- 581 (711)
T ss_pred CCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCH-----------HHHHhcCCCC---
Confidence 344455544432 2466799999999999998765554432 333332210 0011111111
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
.+ .+++.+-+...+.+. -+.+|-.+--.|.-+|| =+.=|+||||||+.
T Consensus 582 -~~---~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG-GQkQRlalARALl~ 634 (711)
T TIGR00958 582 -TP---DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG-GQKQRIAIARALVR 634 (711)
T ss_pred -CC---HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH-HHHHHHHHHHHHhc
Confidence 11 122222233322210 13577666545555553 34678999999997
No 40
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=53.19 E-value=15 Score=36.67 Aligned_cols=106 Identities=22% Similarity=0.211 Sum_probs=55.4
Q ss_pred eceeeeEEEEEE---EEcCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAY---CKEGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~---l~~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
+|.=||.+++.- ..|-+|.|.+||.|++++-++.+|..+- +|.+..|+- ..+|.. +.|
T Consensus 488 sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI-----------~eNi~~-~~~--- 552 (686)
T TIGR03797 488 SGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSI-----------FENIAG-GAP--- 552 (686)
T ss_pred CCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccH-----------HHHHhc-CCC---
Confidence 444555554433 2366799999999999988766665532 333332210 001111 111
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
.++ +.+.+-+...+.+. -..||-.+--.|..+|| =+-=|.+|||||+.
T Consensus 553 -~~~---e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG-GQrQRialARAll~ 605 (686)
T TIGR03797 553 -LTL---DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG-GQRQRLLIARALVR 605 (686)
T ss_pred -CCH---HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH-HHHHHHHHHHHHhc
Confidence 111 22223233332210 14577766656655653 33568899999997
No 41
>KOG3288|consensus
Probab=52.93 E-value=13 Score=34.01 Aligned_cols=29 Identities=28% Similarity=0.161 Sum_probs=26.2
Q ss_pred CceecEEEEecCCCcccHHHHHHHHHHHH
Q psy8077 126 FAGVDIRVRVNGGGHVAQIYAIRQAISKA 154 (223)
Q Consensus 126 ~~~~DI~i~V~GGG~sgQA~AIr~aIARa 154 (223)
..+|-++|.|-+=|++||.+|.+||-+-+
T Consensus 272 t~~ftlRC~~Cq~glvGq~ea~eHA~~TG 300 (307)
T KOG3288|consen 272 TAKFTLRCMVCQMGLVGQKEAAEHAKATG 300 (307)
T ss_pred ccceEEEeeecccceeeHHHHHHHHHhcC
Confidence 47999999999999999999999997654
No 42
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=52.71 E-value=21 Score=33.60 Aligned_cols=106 Identities=26% Similarity=0.357 Sum_probs=62.8
Q ss_pred eceeeeEEEEEE--E-EcCceeEEEcCccccccCcH---HHHHH---HhhhhhhhcccccceeEEEecCcceEEEcCccc
Q psy8077 32 FGRKKSATAVAY--C-KEGKGNLRVDGRPLEMIEPK---LLQYK---LQEPILLLGTKSATAVAYCKEGKGNLRVDGRPL 102 (223)
Q Consensus 32 tGrRKtAvArv~--l-~~G~G~i~VNg~p~e~yf~~---~~r~~---i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl 102 (223)
+|-=|+..-|+. + +|-+|+|.|||.++..+-.. .+|.+ |.|-|.+++.+|....|.. |+
T Consensus 41 SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~------------PL 108 (339)
T COG1135 41 SGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF------------PL 108 (339)
T ss_pred CCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhh------------hH
Confidence 566677766554 2 58899999999888777652 34433 4466666666665544432 22
Q ss_pred ccc-Cc-HHHHHHHHhHHHHhCCCCCceecEE-EEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 103 EMI-EP-KLLQYKLQEPILLLGKDKFAGVDIR-VRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 103 ~~Y-f~-~~~r~~v~~PL~~~~~~~~~~~DI~-i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+.- .+ ......+.+=|+++|.+ ++-|=+ ...+|| |- =|-||||||..
T Consensus 109 eiag~~k~ei~~RV~elLelVgL~--dk~~~yP~qLSGG----QK--QRVaIARALa~ 158 (339)
T COG1135 109 ELAGVPKAEIKQRVAELLELVGLS--DKADRYPAQLSGG----QK--QRVAIARALAN 158 (339)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCh--hhhccCchhcCcc----hh--hHHHHHHHHhc
Confidence 211 22 34566677777787764 232221 233443 33 37899999974
No 43
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=52.56 E-value=19 Score=36.96 Aligned_cols=102 Identities=25% Similarity=0.326 Sum_probs=63.9
Q ss_pred eceeeeEEEEEEE---EcCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAYC---KEGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~l---~~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
+|.=|+..++.-. .|=.|.|.+||.++..+-+..+|..+- +|++..| .+.|
T Consensus 508 SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g----------------------SI~e 565 (709)
T COG2274 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG----------------------SIRE 565 (709)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC----------------------cHHH
Confidence 5566776665543 366789999999999888877776532 3333332 1111
Q ss_pred cC----cHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCccc-HHHHHHHHHHHHHHH
Q psy8077 105 IE----PKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVA-QIYAIRQAISKALVA 157 (223)
Q Consensus 105 Yf----~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sg-QA~AIr~aIARaL~~ 157 (223)
-+ |....+.+.+-..+++.+. -..||-.+--.|.++|| |-+ |+||||||+.
T Consensus 566 Ni~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ--rlalARaLl~ 626 (709)
T COG2274 566 NIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ--RLALARALLS 626 (709)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH--HHHHHHHhcc
Confidence 11 1223455555555554321 26889888889999985 544 6789999986
No 44
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=52.00 E-value=29 Score=31.20 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=17.0
Q ss_pred eceeeeEEEEEE--E-EcCceeEEEcCccc
Q psy8077 32 FGRKKSATAVAY--C-KEGKGNLRVDGRPL 58 (223)
Q Consensus 32 tGrRKtAvArv~--l-~~G~G~i~VNg~p~ 58 (223)
+|.=||-.=|+- + .+-+|.|.|+|.++
T Consensus 37 SGSGKSTlLRclN~LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 37 SGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66 (240)
T ss_pred CCCCHHHHHHHHHCCcCCCCceEEECCEec
Confidence 555566544443 1 36679999999654
No 45
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=51.41 E-value=49 Score=27.23 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=48.1
Q ss_pred ccceeEEEecCcceEE-----EcCccccccC--cHHH--HHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHH
Q psy8077 81 SATAVAYCKEGKGNLR-----VDGRPLEMIE--PKLL--QYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAI 151 (223)
Q Consensus 81 ta~A~v~~v~G~G~I~-----VNg~pl~~Yf--~~~~--r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aI 151 (223)
|.+++.....+.+.|. ||++-++..+ |..+ .+.-+.-+.--... -|++||.++++..+.+...-.|-.++
T Consensus 5 TGfgr~~~~~~~~~~~vEikSvN~R~Ldi~~rlP~~l~~lE~~ir~~i~~~l~-RGkV~v~i~~~~~~~~~~~~~in~~l 83 (159)
T PF03755_consen 5 TGFGRAEAETDGGSISVEIKSVNHRFLDISIRLPRELSSLEPEIRKLIRKKLS-RGKVEVSIRVERSSESAVELRINEEL 83 (159)
T ss_pred CCCceeEEecCCeEEEEEEEecccCceeeEEeCCHHHHHHHHHHHHHHHHhcc-cceEEEEEEEEECcccCCCcccCHHH
Confidence 4556666666777766 5999888776 3221 11111111111111 49999999999887665555666666
Q ss_pred HHHHHHhchhh
Q psy8077 152 SKALVAYYQKC 162 (223)
Q Consensus 152 ARaL~~~~~~~ 162 (223)
++++...-...
T Consensus 84 ~~~y~~~l~~l 94 (159)
T PF03755_consen 84 AKAYYEALKEL 94 (159)
T ss_pred HHHHHHHHHHH
Confidence 66666554433
No 46
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=51.07 E-value=22 Score=34.84 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=56.1
Q ss_pred eceeeeEEEEEE---EEcCceeEEEcCccccccCcHHHHHHH----hhhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAY---CKEGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~---l~~G~G~i~VNg~p~e~yf~~~~r~~i----~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
+|-=||.+++.- ..|-+|.|.+||.++.++-++.+|..+ .+|.+..|+-. .+|....
T Consensus 375 sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~-----------~Ni~~~~----- 438 (574)
T PRK11160 375 TGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR-----------DNLLLAA----- 438 (574)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH-----------HHhhcCC-----
Confidence 455566654443 246779999999999998776665543 24443332100 0111110
Q ss_pred cCcHHHHHHHHhHHHHhCCCC----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+....+.+.+-+...+.+. -..||-.+--.|.-+| .-+.=|.+|||||+.
T Consensus 439 --~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LS-gGqrqRialARall~ 492 (574)
T PRK11160 439 --PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLS-GGEQRRLGIARALLH 492 (574)
T ss_pred --CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCC-HHHHHHHHHHHHHhc
Confidence 1111122333333332210 1456766654544455 355789999999997
No 47
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=48.85 E-value=23 Score=35.43 Aligned_cols=94 Identities=23% Similarity=0.308 Sum_probs=49.2
Q ss_pred EcCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHH
Q psy8077 45 KEGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILL 120 (223)
Q Consensus 45 ~~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~ 120 (223)
.|-+|.|.+||.++.++-++.+|..+. +|....|+- .-+|...+ +....+.+.+-+..
T Consensus 508 ~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti-----------~eNi~~~~-------~~~~~~~i~~a~~~ 569 (694)
T TIGR01846 508 TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSI-----------RDNIALCN-------PGAPFEHVIHAAKL 569 (694)
T ss_pred CCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhH-----------HHHHhcCC-------CCCCHHHHHHHHHH
Confidence 467799999999999887765555432 222222210 00111111 11111222222222
Q ss_pred hCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 121 LGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 121 ~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
.+.+. -..+|-.+.-.|..+|| =+-=|++|||||+.
T Consensus 570 ~~l~~~i~~lp~gl~t~i~~~g~~LSg-Gq~qri~lARall~ 610 (694)
T TIGR01846 570 AGAHDFISELPQGYNTEVGEKGANLSG-GQRQRIAIARALVG 610 (694)
T ss_pred cChHHHHHhCcCccCcEecCCCCCCCH-HHHHHHHHHHHHHh
Confidence 22110 14678777666666664 44568899999987
No 48
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=48.24 E-value=21 Score=35.67 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.1
Q ss_pred ceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 127 AGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 127 ~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
..||-.+--.|..+||= +-=|++|||||+.
T Consensus 589 ~gl~T~i~e~G~~LSgG-QrQRlalARall~ 618 (694)
T TIGR03375 589 DGLDMQIGERGRSLSGG-QRQAVALARALLR 618 (694)
T ss_pred ccccceecCCCCCCCHH-HHHHHHHHHHHhc
Confidence 46787776666666652 4668999999996
No 49
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=46.19 E-value=57 Score=26.02 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=49.6
Q ss_pred cCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhch
Q psy8077 90 EGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQ 160 (223)
Q Consensus 90 ~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~ 160 (223)
+|--.+.|-|.|=... ...++.|..-|.-.+.. +..-||++++.+||+-=+--+.-+|||-||+.-..
T Consensus 7 ~Glp~~~ivGl~~~av--~esr~Rv~~al~~~g~~-~p~~~i~VNlap~~l~k~g~~~DLaIA~ailsa~~ 74 (121)
T PF13541_consen 7 RGLPSFNIVGLPDTAV--KESRERVRSALKNSGFP-FPNQDITVNLAPADLKKEGPAFDLAIAIAILSAFG 74 (121)
T ss_pred CCCCceEEecCchHHH--HHHHHHHHHHHHhcCCC-CCcceeeeEEEeCCEEEeeeeehHHHHHHHHHhCC
Confidence 3333455555542211 24677888888888876 78999999999999888888999999999987543
No 50
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=44.12 E-value=28 Score=33.49 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=19.1
Q ss_pred EcCceeEEEcCccccccCcHHHHHH
Q psy8077 45 KEGKGNLRVDGRPLEMIEPKLLQYK 69 (223)
Q Consensus 45 ~~G~G~i~VNg~p~e~yf~~~~r~~ 69 (223)
.|-+|.|.+||.|+.++-++.++..
T Consensus 373 ~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 373 DPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CCCCcEEEECCEehhhCCHHHHHhh
Confidence 4667999999999998876555544
No 51
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=42.10 E-value=35 Score=28.42 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=35.2
Q ss_pred eEEEcCccccccCc--HHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccc
Q psy8077 50 NLRVDGRPLEMIEP--KLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLE 103 (223)
Q Consensus 50 ~i~VNg~p~e~yf~--~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~ 103 (223)
.++|||++.+...+ +.+..-+.+-+-++|.|..-..- .=|.=.|.|||++..
T Consensus 5 ~f~vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G--~CGACtVlvdG~~v~ 58 (151)
T TIGR03198 5 RFTVNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIG--RCGACSVLIDGKLAN 58 (151)
T ss_pred EEEECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCC--cCCccEEEECCcEEe
Confidence 48999999877654 45666677788889987662110 113337999998764
No 52
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=40.97 E-value=54 Score=32.04 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=16.3
Q ss_pred EcCceeEEEcCccccccCcHHHH
Q psy8077 45 KEGKGNLRVDGRPLEMIEPKLLQ 67 (223)
Q Consensus 45 ~~G~G~i~VNg~p~e~yf~~~~r 67 (223)
.|-+|.|.+||.++..+-.+.++
T Consensus 393 ~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 393 IPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred CCCCcEEEECCEECCCCCHHHHH
Confidence 35668899999888877554343
No 53
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=39.69 E-value=30 Score=38.32 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=50.8
Q ss_pred CceeEEEcCccccccCcHHHHHHH----hhhhhhhcccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhC
Q psy8077 47 GKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLG 122 (223)
Q Consensus 47 G~G~i~VNg~p~e~yf~~~~r~~i----~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~ 122 (223)
-+|.|.|||.++..+-.+.+|..+ .+|.+.-|+ |+=|=-|..+| ++.....+ |..++
T Consensus 1271 ~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GT---------------IR~NLdp~~~~-tdeei~~a---L~~~~ 1331 (1490)
T TIGR01271 1271 TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGT---------------FRKNLDPYEQW-SDEEIWKV---AEEVG 1331 (1490)
T ss_pred CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccC---------------HHHHhCcccCC-CHHHHHHH---HHHCC
Confidence 468999999999988776666543 255554432 11111222222 22222222 33222
Q ss_pred CC-----CCceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 123 KD-----KFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 123 ~~-----~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
.. .-+.+|-.+.-.|..+| .=+-=|++|||||+.-
T Consensus 1332 L~~~i~~lp~GLdt~v~e~G~nLS-gGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271 1332 LKSVIEQFPDKLDFVLVDGGYVLS-NGHKQLMCLARSILSK 1371 (1490)
T ss_pred CHHHHHhCccccccccccCCCcCC-HHHHHHHHHHHHHhCC
Confidence 10 01467777766555555 3456688999999973
No 54
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=38.94 E-value=32 Score=28.70 Aligned_cols=84 Identities=27% Similarity=0.286 Sum_probs=48.5
Q ss_pred eEEEcCccccccCc--HHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHh-CCCCC
Q psy8077 50 NLRVDGRPLEMIEP--KLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLL-GKDKF 126 (223)
Q Consensus 50 ~i~VNg~p~e~yf~--~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~-~~~~~ 126 (223)
.++|||++.+.-.+ +.+..-+.+-+-++|.|..-..- .=|.-.|.|||+|..--. -|+.-. |.+
T Consensus 3 ~~~vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G--~CGACtVlvdg~~v~SCl---------~~~~~~~G~~-- 69 (148)
T TIGR03193 3 RLTVNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGG--ECGACTVLVDGRPRLACS---------TLAHRVAGRK-- 69 (148)
T ss_pred EEEECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCC--CCCCCEEEECCeEeeccH---------hhHhhcCCCc--
Confidence 37899998765433 34555566667788877554321 114447999999875332 222222 221
Q ss_pred ceecEEEEecCCCcccHHHHHHHHH
Q psy8077 127 AGVDIRVRVNGGGHVAQIYAIRQAI 151 (223)
Q Consensus 127 ~~~DI~i~V~GGG~sgQA~AIr~aI 151 (223)
..+|.|=+..++...|.+|+
T Consensus 70 -----V~TiEgl~~~~~l~pvq~af 89 (148)
T TIGR03193 70 -----VETVEGLATNGRLSRLQQAF 89 (148)
T ss_pred -----EEEeCCCCCCCCCCHHHHHH
Confidence 35666655445556666665
No 55
>KOG0055|consensus
Probab=38.52 E-value=38 Score=37.05 Aligned_cols=93 Identities=25% Similarity=0.337 Sum_probs=57.2
Q ss_pred cCceeEEEcCccccccCcHHHHHHH----hhhhhhhcccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHh
Q psy8077 46 EGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLL 121 (223)
Q Consensus 46 ~G~G~i~VNg~p~e~yf~~~~r~~i----~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~ 121 (223)
|-.|.|.|+|.++..+-...+|.++ .||.+..++-... +.=|. .....++|.+-+...
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrEN----I~YG~--------------~~vs~~eIi~Aak~A 1103 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIREN----IAYGS--------------EEVSEEEIIEAAKLA 1103 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHH----HhccC--------------CCCCHHHHHHHHHHh
Confidence 4568899999999999888888775 3787776521110 00010 011233444444444
Q ss_pred CCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 122 GKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 122 ~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+.+. -..||-.+=-+|.=+|| =+-=|.||||||+.
T Consensus 1104 NaH~FI~sLP~GyDT~vGerG~QLSG-GQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1104 NAHNFISSLPQGYDTRVGERGVQLSG-GQKQRIAIARAILR 1143 (1228)
T ss_pred hhHHHHhcCcCcccCccCcccCcCCc-hHHHHHHHHHHHHc
Confidence 3221 26899888777777765 23458999999997
No 56
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=37.49 E-value=72 Score=30.99 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=25.0
Q ss_pred eceeeeEEEEEE---EEcCceeEEEcCccccccCcHHHHHH
Q psy8077 32 FGRKKSATAVAY---CKEGKGNLRVDGRPLEMIEPKLLQYK 69 (223)
Q Consensus 32 tGrRKtAvArv~---l~~G~G~i~VNg~p~e~yf~~~~r~~ 69 (223)
+|.=||..++.- ..|-+|.|.+||.|+.++-.+.++..
T Consensus 378 sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 378 SGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 444555554433 24667999999999998876544444
No 57
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=36.63 E-value=95 Score=31.25 Aligned_cols=63 Identities=25% Similarity=0.376 Sum_probs=40.6
Q ss_pred cCcceEEEcCccccccCcHHHHHHHHhHHH----HhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhc
Q psy8077 90 EGKGNLRVDGRPLEMIEPKLLQYKLQEPIL----LLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY 159 (223)
Q Consensus 90 ~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~----~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~ 159 (223)
||.|.+..+|... ...++.|..-+. .++.+ +..+||+|++.||+ --.--+.=+|||-||+...
T Consensus 474 pg~~~vgl~~~~~-----~e~kerv~~A~~~l~~~~g~~-~~~~di~vnl~~~~-~k~gpsadLaia~ailSa~ 540 (615)
T TIGR02903 474 PGKGTVRFNDTAG-----SMAKDSVFNAASVIRKITGKD-LSNYDIHVNVIGGG-RIDGPSAGAAITLCMISAI 540 (615)
T ss_pred CCCceEeeCCcch-----HHHHHHHHHHHHHHHHhCCCC-CCCeeEEEEcCCCC-CCCCchHHHHHHHHHHHhc
Confidence 4556666665433 335566655555 45655 78999999999876 3444466777777777653
No 58
>PTZ00243 ABC transporter; Provisional
Probab=36.60 E-value=47 Score=37.07 Aligned_cols=106 Identities=24% Similarity=0.347 Sum_probs=56.3
Q ss_pred eceeeeEEEEEEE---EcCceeEEEcCccccccCcHHHHHHH----hhhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 32 FGRKKSATAVAYC---KEGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 32 tGrRKtAvArv~l---~~G~G~i~VNg~p~e~yf~~~~r~~i----~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
||-=|+.++..-+ .|-+|.|.|||.|+..|-.+.+|..+ .+|++..|+ |.=|=.|..+
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gT---------------IreNIdp~~~ 1409 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGT---------------VRQNVDPFLE 1409 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccccc---------------HHHHhCcccC
Confidence 3444444443332 35569999999999999776666554 256555442 1111112222
Q ss_pred cCcHHHHHHHHhHHHHhCCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 105 IEPKLLQYKLQEPILLLGKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
| + -+.+.+-+..++.+. -+.||-.+--.|.-+| .=+==|++|||||+.
T Consensus 1410 ~-s---deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLS-gGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1410 A-S---SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYS-VGQRQLMCMARALLK 1462 (1560)
T ss_pred C-C---HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCC-HHHHHHHHHHHHHhc
Confidence 2 1 233334344333211 1456766654444444 233457899999996
No 59
>KOG0055|consensus
Probab=36.27 E-value=37 Score=37.16 Aligned_cols=68 Identities=28% Similarity=0.342 Sum_probs=45.5
Q ss_pred cCcceEEEcCccccccCcHHHHHHH----HhHHHHhCC---------CC----------------------CceecEEEE
Q psy8077 90 EGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGK---------DK----------------------FAGVDIRVR 134 (223)
Q Consensus 90 ~G~G~I~VNg~pl~~Yf~~~~r~~v----~~PL~~~~~---------~~----------------------~~~~DI~i~ 134 (223)
|-.|.|.|+|.++.++..+.+|.+| .+|+.+..+ ++ ...||-.+-
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 4579999999999988777777765 457665432 00 145666655
Q ss_pred ecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 135 VNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 135 V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
-+|-=+|| =+--|.||||||+.-
T Consensus 485 e~g~qLSG-GQKQRIAIARalv~~ 507 (1228)
T KOG0055|consen 485 ERGVQLSG-GQKQRIAIARALVRN 507 (1228)
T ss_pred CCCCCCCh-HHHHHHHHHHHHHhC
Confidence 55533443 235699999999863
No 60
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=35.62 E-value=73 Score=32.82 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=55.0
Q ss_pred EEEcCccccccCc--HHHHHHHhhhhh---hhc-----cccccee--EEEecCcceEEEcCccccccCcH--HHHHHHHh
Q psy8077 51 LRVDGRPLEMIEP--KLLQYKLQEPIL---LLG-----TKSATAV--AYCKEGKGNLRVDGRPLEMIEPK--LLQYKLQE 116 (223)
Q Consensus 51 i~VNg~p~e~yf~--~~~r~~i~~PL~---ltG-----rKta~A~--v~~v~G~G~I~VNg~pl~~Yf~~--~~r~~v~~ 116 (223)
+.|+-..++.|.. +.....+..+.. ++| .....=. +.+.+|.|++.+.|.+-...-.. ....-+..
T Consensus 572 v~i~~~~~~~~lg~~~~~~~~~~~~~~~G~v~gla~~~~~g~~~~iE~~~~~G~~~~~~tG~~~~~~kES~~~a~~~v~~ 651 (775)
T TIGR00763 572 VVITPDNLKKYLGKPVFTYERAYEVTPPGVVMGLAWTPMGGDTLFIETTKVAGKGSLELTGQLGDVMKESAQIALTYVRS 651 (775)
T ss_pred ccCCHHHHHHhcCccccccchhccCCCCeEEEEEEEeCCCcEEEEEEEEEeCCCceEEEeCCchHHHHHHHHHHHHHHHH
Confidence 6777777777763 333333333322 122 1111111 12347899999999653322111 11111222
Q ss_pred HHHHhCCC--CCceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 117 PILLLGKD--KFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 117 PL~~~~~~--~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
-+.-.+.+ .+.++||++++.+|.....--+.=+|||-||+..
T Consensus 652 ~~~~~~~~~~~~~~~di~v~~~~g~~~k~Gpsa~laia~al~sa 695 (775)
T TIGR00763 652 IAADLGISPNFFEKADIHLHVPEGATPKDGPSAGITMATALLSL 695 (775)
T ss_pred HHHHcCCCccccCCeEEEEEcCCcccCCCCCcchHHHHHHHHHH
Confidence 22223322 2468899999998866544334455666666654
No 61
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=35.27 E-value=58 Score=31.87 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=25.7
Q ss_pred eceeeeEEEEEEE---EcCceeEEEcCccccccCcHHHHHHH
Q psy8077 32 FGRKKSATAVAYC---KEGKGNLRVDGRPLEMIEPKLLQYKL 70 (223)
Q Consensus 32 tGrRKtAvArv~l---~~G~G~i~VNg~p~e~yf~~~~r~~i 70 (223)
+|.=||..++.-+ .|-+|.|.+||.+++++-++.++..+
T Consensus 370 sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 370 TGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 4555655544432 45678999999999988765555443
No 62
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=32.84 E-value=59 Score=27.74 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=28.1
Q ss_pred EcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEc
Q psy8077 45 KEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVD 98 (223)
Q Consensus 45 ~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VN 98 (223)
.+.+.+|.+||.|+..= .+++.+=..+|....-.-++. .+.+.||+|.+.+|
T Consensus 34 ~~~~~~II~Ng~Pi~~~-~~F~~~w~~~pv~TqH~L~s~-D~H~IPGsgt~i~N 85 (166)
T PF10429_consen 34 LPPNCKIIWNGTPIAQP-TAFQQTWQQQPVQTQHQLTSF-DCHVIPGSGTFIIN 85 (166)
T ss_dssp ECCEEEEEETTEEES-H-HHHHHHHHCCS--EEEEEEEE-EEEEETTTTEEEEE
T ss_pred cCCCcEEEECCccCCCH-HHHHHHHHhCccceeeeeeee-eeeEeCCCCeEEEe
Confidence 34566899999987532 133333344553322222222 34567899976654
No 63
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=31.81 E-value=1.3e+02 Score=30.97 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=41.4
Q ss_pred EEEecCcceEEEcCccccccCcHH------HHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 86 AYCKEGKGNLRVDGRPLEMIEPKL------LQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 86 v~~v~G~G~I~VNg~pl~~Yf~~~------~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
+.+.+|+|++.++|..+.+-..+. +...-..-|.. +. .+.+.||++.|.-|...+=.-.+-.|++-|||..
T Consensus 516 ~~~~~G~Gkl~lTG~~lg~vmKESa~~A~sy~ks~a~~l~~-~~-~~~~~DiHIHvpega~pkdGpSAGia~~~AL~Sa 592 (675)
T TIGR02653 516 VQVSAGSGKHSVSGLGSNTTAKESIRVAFDYFKGNLVRISA-SA-KFSEHDYHLHVVDLHNTGPSTEASLAALIALCSA 592 (675)
T ss_pred EEEeCCCCceeeccCCchHHHHHHHHHHHHHHHHhHHhcCC-Cc-ccCcceEEEECCCCCCCCCCchhHHHHHHHHHHH
Confidence 445689999999996666554321 11111111111 12 3689999999976655555444555555666553
No 64
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=30.26 E-value=52 Score=29.15 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=32.5
Q ss_pred eEEEcCccccccCc--HHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccc
Q psy8077 50 NLRVDGRPLEMIEP--KLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLE 103 (223)
Q Consensus 50 ~i~VNg~p~e~yf~--~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~ 103 (223)
.++|||++.+...+ +.+..-+.+-+.++|.|..-..- .=|.-.|.|||+++.
T Consensus 53 ~~~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G--~CGACTVlVdG~~v~ 106 (217)
T PRK11433 53 TLKVNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHG--QCGACTVLVNGRRLN 106 (217)
T ss_pred EEEECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCC--CcCceEEEECCEEee
Confidence 48899988765443 45555566667788877552111 012337889998865
No 65
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=30.01 E-value=60 Score=29.40 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=53.4
Q ss_pred EEcCceeEEEcCccccccCc-HHHHHHHhhhhh--hhcccccceeEEEecCcceEEEcCccccccCc---HHHHHHHHhH
Q psy8077 44 CKEGKGNLRVDGRPLEMIEP-KLLQYKLQEPIL--LLGTKSATAVAYCKEGKGNLRVDGRPLEMIEP---KLLQYKLQEP 117 (223)
Q Consensus 44 l~~G~G~i~VNg~p~e~yf~-~~~r~~i~~PL~--ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~---~~~r~~v~~P 117 (223)
++|-+|.|.++|+++..+-+ |..+....=|=. ....-+..+.|.+ --.|...+|. ..+.+.+.+-
T Consensus 52 l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~---------GR~p~~~~~~~~~~~D~~~v~~a 122 (258)
T COG1120 52 LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLL---------GRYPHLGLFGRPSKEDEEIVEEA 122 (258)
T ss_pred CCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhh---------cCCcccccccCCCHhHHHHHHHH
Confidence 56889999999999999987 444332221111 0001111111111 1234445554 4567788888
Q ss_pred HHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHh
Q psy8077 118 ILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 158 (223)
Q Consensus 118 L~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~ 158 (223)
|..++.+.+..=. .-..+| ||-+ |--|||||.+-
T Consensus 123 L~~~~~~~la~r~-~~~LSG----GerQ--rv~iArALaQ~ 156 (258)
T COG1120 123 LELLGLEHLADRP-VDELSG----GERQ--RVLIARALAQE 156 (258)
T ss_pred HHHhCcHHHhcCc-ccccCh----hHHH--HHHHHHHHhcC
Confidence 8988875332222 112344 3333 55788888765
No 66
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=29.40 E-value=3.3e+02 Score=25.24 Aligned_cols=96 Identities=23% Similarity=0.264 Sum_probs=53.2
Q ss_pred EEEecCcc-eEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEe---cCCCcccHHHHHHHHHHHHHHHhchh
Q psy8077 86 AYCKEGKG-NLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRV---NGGGHVAQIYAIRQAISKALVAYYQK 161 (223)
Q Consensus 86 v~~v~G~G-~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V---~GGG~sgQA~AIr~aIARaL~~~~~~ 161 (223)
+.+..+.| .|..||++.+.= .-.++ ++.++.+ .++|++.. -|=|. |-++|+.+|-|.|+....+-
T Consensus 41 v~v~~~~~~~v~~Ng~~~d~~----~~~~v---~e~L~~~---~~~v~~~~~~P~G~G~-G~Sga~AL~~Ala~a~~~~~ 109 (283)
T COG1829 41 VEVRFGEGTGVRLNGKKIDLP----ITRKV---IEKLGPD---GVGVRIESPVPLGCGY-GVSGAGALGTALALAEELGL 109 (283)
T ss_pred EEEEecCCceEEECCeeccch----hHHHH---HHHhCcc---CcceEEEecCCCCccc-chhHHHHHHHHHHHHhhcCC
Confidence 44555666 799999876521 11222 2344442 25566665 23332 23346666666666544321
Q ss_pred h----------hhhchhhhhhhhhhhccccccccccCCCcc
Q psy8077 162 C----------KQATGLLGTEKMLVKSTLTLLGKDKFAGVD 192 (223)
Q Consensus 162 ~----------~~~~~~~~lk~~l~~~D~~lL~rDK~G~~k 192 (223)
. .+......|-+....+--+++.|.|+|.++
T Consensus 110 ~~~~a~~~AH~aEV~~gtGLGDVvAq~~GGlViR~~pG~Pg 150 (283)
T COG1829 110 GEESAARIAHVAEVENGTGLGDVVAQYTGGLVIRVKPGGPG 150 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCchHHHHHhcCcEEEEecCCCCC
Confidence 0 112223455566777888999999999884
No 67
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=29.00 E-value=38 Score=29.03 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=29.4
Q ss_pred eEEEcCccccccCcHHHHHHHhhhhhhhccc-ccceeEEEecCcc---eEEEcCccccccCc
Q psy8077 50 NLRVDGRPLEMIEPKLLQYKLQEPILLLGTK-SATAVAYCKEGKG---NLRVDGRPLEMIEP 107 (223)
Q Consensus 50 ~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrK-ta~A~v~~v~G~G---~I~VNg~pl~~Yf~ 107 (223)
.|+|||+++-.. ..+.+..-.++|.+-+++ .+...+-.++|.. .+.|||+|+++|-.
T Consensus 32 vI~VDGkei~r~-~wmfklvg~e~F~ig~~~~k~~I~I~~~~g~~YeYsL~VdGksl~ky~e 92 (177)
T PF06905_consen 32 VIKVDGKEIVRR-DWMFKLVGKETFTIGGKNTKCEINIEAVSGFAYEYSLEVDGKSLKKYKE 92 (177)
T ss_dssp EEEETTEEEEEE----S---EEEEEEETTTTEEEEEEEEEETTTEEEEEEEETTEEEEE--S
T ss_pred EEEECCcEEEEe-cceeeeCcccEEEECCCceEEEEEEEecCCceEEEEEEECCEEHHHHHH
Confidence 489999854221 123344456777665432 2333333345543 56799999999853
No 68
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=29.00 E-value=34 Score=22.73 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=9.1
Q ss_pred HHHHHHHhhhc
Q psy8077 212 AISKALVAYYQ 222 (223)
Q Consensus 212 ~~~~~~v~~~~ 222 (223)
-||++||.||.
T Consensus 21 ~v~r~l~~yY~ 31 (41)
T PF14475_consen 21 HVHRVLRKYYT 31 (41)
T ss_pred HHHHHHHHHHH
Confidence 47899999984
No 69
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=28.42 E-value=37 Score=30.10 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=21.7
Q ss_pred EEEEcCceeEEEcCccccccCc-HHHH
Q psy8077 42 AYCKEGKGNLRVDGRPLEMIEP-KLLQ 67 (223)
Q Consensus 42 v~l~~G~G~i~VNg~p~e~yf~-~~~r 67 (223)
+-+.||+|.|.+.|.|++.|.. |..|
T Consensus 46 AGm~~~sGsi~~~G~~l~~~~~~eLAr 72 (248)
T COG4138 46 AGMTSGSGSIQFAGQPLEAWSATELAR 72 (248)
T ss_pred hCCCCCCceEEECCcchhHHhHhHHHH
Confidence 3578999999999999999986 6444
No 70
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=26.35 E-value=1.5e+02 Score=27.97 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=23.4
Q ss_pred eceeeeEEEEEE---EEcCceeEEEcCccccccCcH
Q psy8077 32 FGRKKSATAVAY---CKEGKGNLRVDGRPLEMIEPK 64 (223)
Q Consensus 32 tGrRKtAvArv~---l~~G~G~i~VNg~p~e~yf~~ 64 (223)
+|+=||-+=|.- ..|-+|.|.|||+++....|+
T Consensus 38 SGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 38 SGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh
Confidence 566676543332 346789999999999887774
No 71
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.74 E-value=64 Score=29.10 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=29.8
Q ss_pred HHHHHHHhHHHHhCCCC-CceecEEEEecCCCcccHHHH-HHHHHHHHHHHh
Q psy8077 109 LLQYKLQEPILLLGKDK-FAGVDIRVRVNGGGHVAQIYA-IRQAISKALVAY 158 (223)
Q Consensus 109 ~~r~~v~~PL~~~~~~~-~~~~DI~i~V~GGG~sgQA~A-Ir~aIARaL~~~ 158 (223)
..-..|..-|...+... ...||+.|.++|||-..--.+ =-..+|||+...
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~ 106 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAAS 106 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhC
Confidence 34556666666665420 127999999999996543322 123455555544
No 72
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=24.85 E-value=43 Score=31.15 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=33.1
Q ss_pred EEEcCccccccCcH---HHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhc
Q psy8077 95 LRVDGRPLEMIEPK---LLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY 159 (223)
Q Consensus 95 I~VNg~pl~~Yf~~---~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~ 159 (223)
-+|+|+|+.+|.+. ...+.+.+=..-.+.+ .+..+|+| + .+++..|+|+..-++-
T Consensus 185 a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~e-------II~~kG~~-t--~~~~A~a~a~~~~ail 242 (313)
T COG0039 185 ATVGGKPLEELLKEDTEEDLEELIERVRNAGAE-------IIEAKGAG-T--YYGPAAALARMVEAIL 242 (313)
T ss_pred eeECCEEHHHHhhcccHhHHHHHHHHHHhhHHH-------HHHccCcc-c--hhhHHHHHHHHHHHHH
Confidence 45899999999763 3344443322222221 12346777 5 7788888887776654
No 73
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=24.05 E-value=1.5e+02 Score=24.20 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=33.1
Q ss_pred cCcceEEEcCccccccCcHHHHHHHH-hH--HHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 90 EGKGNLRVDGRPLEMIEPKLLQYKLQ-EP--ILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 90 ~G~G~I~VNg~pl~~Yf~~~~r~~v~-~P--L~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+-.|+|.+||.++..+.+...+..+- -| +...+.+ ...+ .. ....+.-+.-|.+|||||+.
T Consensus 51 ~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~--~~~~----~~-~~~LS~G~~qrl~laral~~ 114 (180)
T cd03214 51 PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLA--HLAD----RP-FNELSGGERQRVLLARALAQ 114 (180)
T ss_pred CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH--hHhc----CC-cccCCHHHHHHHHHHHHHhc
Confidence 56899999999987654432222221 11 2233321 1111 11 22233345788999999986
No 74
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.04 E-value=3e+02 Score=24.88 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=24.8
Q ss_pred eEEe-eceeeeEE---EEEEEEcCceeEEEcCcccc
Q psy8077 28 SVQV-FGRKKSAT---AVAYCKEGKGNLRVDGRPLE 59 (223)
Q Consensus 28 ~~~~-tGrRKtAv---Arv~l~~G~G~i~VNg~p~e 59 (223)
++.+ +|+=||.+ +--+++|-.|.|.+||+|++
T Consensus 35 v~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 35 VVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70 (259)
T ss_pred EEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence 4444 88889863 44568899999999999875
No 75
>PF05488 PAAR_motif: PAAR motif; InterPro: IPR008727 The PAAR motif is usually found in pairs in a family of bacterial membrane proteins. It is also found as a triplet of tandem repeats comprising the entire length in a another family of hypothetical proteins.
Probab=24.01 E-value=65 Score=22.99 Aligned_cols=48 Identities=21% Similarity=0.448 Sum_probs=28.5
Q ss_pred EEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccc
Q psy8077 44 CKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLE 103 (223)
Q Consensus 44 l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~ 103 (223)
+..|+..+.+||+|+...=.. +.-| +.. ..-.++.|+..++|||+|+-
T Consensus 14 V~~gs~~v~~~G~~~Ar~Gd~-----~~C~------~~~-~~~~I~~G~~~v~i~G~p~a 61 (76)
T PF05488_consen 14 VISGSSNVFINGKPVARVGDQ-----VTCP------KCK-GPGPIVEGSPTVFINGKPAA 61 (76)
T ss_pred EEeCCCCceECCchHHhCcCc-----ccCC------Ccc-ccceeccCCCCccCCcchhh
Confidence 458888999999876432110 0000 000 22335568889999999864
No 76
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=23.90 E-value=1.1e+02 Score=21.53 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.2
Q ss_pred eEEEcCccccccCc
Q psy8077 50 NLRVDGRPLEMIEP 63 (223)
Q Consensus 50 ~i~VNg~p~e~yf~ 63 (223)
+|+|||++++.=+.
T Consensus 2 ~I~vN~k~~~~~~~ 15 (57)
T PF14453_consen 2 KIKVNEKEIETEEN 15 (57)
T ss_pred EEEECCEEEEcCCC
Confidence 58999999887664
No 77
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=22.87 E-value=1.7e+02 Score=28.33 Aligned_cols=47 Identities=26% Similarity=0.271 Sum_probs=35.1
Q ss_pred HHHHHhHH--HHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhc
Q psy8077 111 QYKLQEPI--LLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY 159 (223)
Q Consensus 111 r~~v~~PL--~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~ 159 (223)
|..++.-+ .-.+.+ +...||+|++. ||+-=.--|.-+|||-||+.-.
T Consensus 337 r~~~~~Avl~k~~g~~-~~~~di~vNl~-ggl~~~~~~~DLaia~ailss~ 385 (454)
T TIGR00416 337 RLALLLAVLEKRLGLP-LADQDVFLNVA-GGVKVSEPAADLALLIAIVSSF 385 (454)
T ss_pred HHHHHHHHHHHhcCCC-CCCceEEEEcc-CCcccCCccccHHHHHHHHHhC
Confidence 66666665 555665 78999999999 6766555677888888887754
No 78
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=22.59 E-value=85 Score=30.38 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=17.9
Q ss_pred eecEEEEecCCCcccHHHHHHHH
Q psy8077 128 GVDIRVRVNGGGHVAQIYAIRQA 150 (223)
Q Consensus 128 ~~DI~i~V~GGG~sgQA~AIr~a 150 (223)
..+..+.|=|||+.|-+-|+.++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la 232 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAA 232 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHH
Confidence 44555778899999998888765
No 79
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=22.29 E-value=68 Score=29.78 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=26.3
Q ss_pred ecCcceEEEcCccccccCcHHHHHHHHhHHHHhCC
Q psy8077 89 KEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGK 123 (223)
Q Consensus 89 v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~ 123 (223)
.|-+|+|.|||+++.+|-+..+|..|=.-+.-.++
T Consensus 52 ept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigL 86 (309)
T COG1125 52 EPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGL 86 (309)
T ss_pred CCCCceEEECCeecccCCHHHHHHhhhhhhhhccc
Confidence 46789999999999999876677766555554443
No 80
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=22.21 E-value=1.1e+02 Score=23.07 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=22.6
Q ss_pred eecEEEEec-CCCcccHHHHHHHHHHHHHHH
Q psy8077 128 GVDIRVRVN-GGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 128 ~~DI~i~V~-GGG~sgQA~AIr~aIARaL~~ 157 (223)
-++|++++. -||..|..+|+...||-+|-.
T Consensus 23 p~Evf~~~~~~Gg~~~~~~ai~rliS~~Lr~ 53 (95)
T PF12637_consen 23 PFEVFINVGKAGGCSGNLEAIARLISLALRS 53 (95)
T ss_pred ceEEEEecCcCCCchHHHHHHHHHHHHHHHc
Confidence 455777774 366699999998888888864
No 81
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=21.83 E-value=37 Score=24.30 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=31.3
Q ss_pred CCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchh
Q psy8077 124 DKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGL 168 (223)
Q Consensus 124 ~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~ 168 (223)
+.+|.++|.+...|++++.+..+=.......|-..-+.++..|..
T Consensus 22 ~~LG~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~ 66 (85)
T PF02120_consen 22 PELGSVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQA 66 (85)
T ss_dssp GGG--EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHT
T ss_pred cccCcEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999998887777777776666666554443
Done!