Query psy8077
Match_columns 223
No_of_seqs 293 out of 1901
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 17:49:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Q RP61R, 40S ribosomal pr 100.0 2.7E-48 9.4E-53 316.9 10.2 133 26-202 4-143 (143)
2 2xzm_I RPS16E; ribosome, trans 100.0 1.1E-47 3.7E-52 313.7 8.8 137 22-202 2-145 (145)
3 2zkq_i 40S ribosomal protein S 100.0 5.7E-48 2E-52 315.8 5.4 139 20-202 1-146 (146)
4 2vqe_I 30S ribosomal protein S 100.0 5.7E-47 2E-51 304.0 7.5 125 29-202 4-128 (128)
5 3r8n_I 30S ribosomal protein S 100.0 3.7E-47 1.3E-51 304.7 2.8 126 28-202 2-127 (127)
6 3j20_K 30S ribosomal protein S 100.0 2.6E-45 9E-50 296.7 8.2 130 27-202 2-135 (135)
7 3bbn_I Ribosomal protein S9; s 100.0 4.1E-45 1.4E-49 310.1 3.4 136 19-202 62-197 (197)
8 3iz6_I 40S ribosomal protein S 100.0 3.3E-48 1.1E-52 318.2 -15.4 134 25-202 9-149 (149)
9 2vqe_I 30S ribosomal protein S 99.3 7E-13 2.4E-17 106.2 5.6 83 76-221 6-89 (128)
10 3r8n_I 30S ribosomal protein S 99.3 1.1E-12 3.8E-17 104.8 6.3 82 77-221 6-88 (127)
11 2xzm_I RPS16E; ribosome, trans 99.3 3.7E-13 1.3E-17 109.8 3.3 87 74-222 9-96 (145)
12 2zkq_i 40S ribosomal protein S 99.3 1.2E-12 4E-17 107.0 5.6 88 72-222 8-97 (146)
13 3bbn_I Ribosomal protein S9; s 99.3 1.6E-12 5.5E-17 110.4 5.5 104 56-221 53-158 (197)
14 3u5c_Q RP61R, 40S ribosomal pr 98.6 3.2E-08 1.1E-12 80.5 5.0 89 72-222 5-94 (143)
15 3j20_K 30S ribosomal protein S 98.4 5.3E-08 1.8E-12 78.5 2.2 86 75-222 5-91 (135)
16 3iz6_I 40S ribosomal protein S 92.6 0.0029 1E-07 51.5 -5.2 68 10-93 9-79 (149)
17 4f4c_A Multidrug resistance pr 71.7 1.3 4.4E-05 46.4 1.5 91 46-157 1131-1234(1321)
18 1rre_A ATP-dependent protease 41.3 48 0.0016 27.2 5.8 69 86-156 31-109 (200)
19 3oz2_A Digeranylgeranylglycero 37.1 17 0.00057 30.6 2.4 22 127-150 3-24 (397)
20 3mx7_A FAS apoptotic inhibitor 36.7 6.2 0.00021 29.3 -0.4 55 47-105 28-89 (90)
21 2x36_A LON protease homolog, m 36.5 34 0.0012 28.4 4.1 68 90-157 43-114 (207)
22 3m6a_A ATP-dependent protease 34.4 30 0.001 32.3 3.9 50 89-139 377-431 (543)
23 4f4c_A Multidrug resistance pr 29.9 20 0.00067 37.5 1.9 93 46-157 470-571 (1321)
24 1xhk_A Putative protease LA ho 25.6 1E+02 0.0034 24.8 5.1 13 126-138 77-89 (187)
25 3kkj_A Amine oxidase, flavin-c 24.8 27 0.00094 26.1 1.4 18 133-150 5-22 (336)
26 1n62_A Carbon monoxide dehydro 24.6 38 0.0013 27.3 2.3 52 50-103 7-60 (166)
27 3hrd_D Nicotinate dehydrogenas 24.0 30 0.001 27.8 1.6 52 50-103 7-60 (160)
28 1z0w_A Putative protease LA ho 23.8 80 0.0027 26.0 4.2 61 93-156 44-109 (207)
29 1ffv_A CUTS, iron-sulfur prote 22.6 44 0.0015 26.8 2.3 52 50-103 7-60 (163)
30 2xr4_A Lectin; sugar binding p 20.3 67 0.0023 24.8 2.8 49 12-61 27-79 (116)
31 4gcm_A TRXR, thioredoxin reduc 20.0 54 0.0019 27.0 2.5 23 128-150 4-26 (312)
No 1
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=100.00 E-value=2.7e-48 Score=316.87 Aligned_cols=133 Identities=51% Similarity=0.785 Sum_probs=117.5
Q ss_pred cceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccccc
Q psy8077 26 IKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMI 105 (223)
Q Consensus 26 ~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Y 105 (223)
.++++++||||||+|||||+||+|+|+|||+|+++|||
T Consensus 4 ~~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~------------------------------------------ 41 (143)
T 3u5c_Q 4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEP------------------------------------------ 41 (143)
T ss_dssp CCEEEEEECSTTCEEEEEEEECSCCEEETTEETTTCSS------------------------------------------
T ss_pred cceEEEeccCcceEEEEEEEeCceEEEECCCcHHHHCh------------------------------------------
Confidence 47899999999999999999999999888877666654
Q ss_pred CcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccccccc
Q psy8077 106 EPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGK 185 (223)
Q Consensus 106 f~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~r 185 (223)
+.+++++++||.+++.+.+++|||+|+|+|||+||||+||||||||||++|+++|.|+..+.+||+.|+.||++||||
T Consensus 42 --~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIArAL~~~~~~~vd~~~r~~LK~~l~~yD~glLtr 119 (143)
T 3u5c_Q 42 --EILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIA 119 (143)
T ss_dssp --CSTHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSTTSC
T ss_pred --HHHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcC
Confidence 345667778888888766799999999999999999999999999999999877776666778998888899899888
Q ss_pred c-------cCCCcceeEEEecCcc
Q psy8077 186 D-------KFAGVDIRVRVNGGGH 202 (223)
Q Consensus 186 D-------K~G~~kARk~~Q~sKR 202 (223)
| |||++|||++||||||
T Consensus 120 D~R~~ErKK~G~~kARk~~Q~SkR 143 (143)
T 3u5c_Q 120 DSRRPEPKKFGGKGARSRFQKSYR 143 (143)
T ss_dssp CCCCCCCCCSSSSSSSCCCCCCCC
T ss_pred CCcccccCCCCCcccccccccccC
Confidence 8 9999999999999998
No 2
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=100.00 E-value=1.1e-47 Score=313.74 Aligned_cols=137 Identities=42% Similarity=0.634 Sum_probs=113.7
Q ss_pred CccccceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcc
Q psy8077 22 PKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRP 101 (223)
Q Consensus 22 ~~~~~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~p 101 (223)
++...++++++||||||+|||||+||+|+|+|||+|++ ||+.
T Consensus 2 ~~~~~~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~l~-yf~~------------------------------------- 43 (145)
T 2xzm_I 2 SQQKPQLVQTFGRKKNAVAVASVRPGKGLLKVNGSPID-MINP------------------------------------- 43 (145)
T ss_dssp -CCCCSCEEEEEEETTEEEEEEEEESSCEEEESSSBGG-GCSS-------------------------------------
T ss_pred CCCCccEEEEEeECCCEEEEEEEEeCceEEEECCEeHH-HcCc-------------------------------------
Confidence 34556789999999999999999999999999887777 6541
Q ss_pred ccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccc
Q psy8077 102 LEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLT 181 (223)
Q Consensus 102 l~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~ 181 (223)
+.+++++++||.+++.+.+++|||.|+|+|||.||||+||||||||||++|+..|.++..+.+||+.|+.||++
T Consensus 44 ------~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIArAL~~~~~k~~d~~~r~~Lk~~l~~ydrg 117 (145)
T 2xzm_I 44 ------QILQAKIYEPILLLGQQKFANLDIRIRVRGSGYTSQVYAIRQALSKGIVAYHAKYVDENSKREIKEQLMQYDRS 117 (145)
T ss_dssp ------TTTHHHHHHHHHHHCHHHHHHEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCST
T ss_pred ------HHHHHHHHHHHHHhChhhhCceeEEEEEEcCCeecHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcCCC
Confidence 44666777788888733358999999999999999999999999999999944443333345677788888888
Q ss_pred ccccc-------cCCCcceeEEEecCcc
Q psy8077 182 LLGKD-------KFAGVDIRVRVNGGGH 202 (223)
Q Consensus 182 lL~rD-------K~G~~kARk~~Q~sKR 202 (223)
||||| |||++|||++||||||
T Consensus 118 lLtrD~R~~ErKK~G~~kARk~~Q~SkR 145 (145)
T 2xzm_I 118 LLVADPRRMEPKKCGGRGARSKMQKAYR 145 (145)
T ss_dssp TTSCBCCCCCCCCTTSSSSSCCCCCCCC
T ss_pred cCcCCCcccccCcCCCcccccccccccC
Confidence 88888 9999999999999998
No 3
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.7e-48 Score=315.84 Aligned_cols=139 Identities=58% Similarity=0.870 Sum_probs=113.0
Q ss_pred CCCccccceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcC
Q psy8077 20 KPPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDG 99 (223)
Q Consensus 20 ~~~~~~~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg 99 (223)
||..+..++++++||||||+|||||.||+|+|+|||+|+ +||+.
T Consensus 1 ~~~~~~~~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~l-eyf~~----------------------------------- 44 (146)
T 2zkq_i 1 MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPL-EMIEP----------------------------------- 44 (146)
T ss_dssp -------CCEEECCBCSSCEEEEEEEESSSCEEETTEEH-HHHST-----------------------------------
T ss_pred CCCCCCCceEEEEeeCCCeEEEEEEEcCCeeEEEcCcCH-HHcCc-----------------------------------
Confidence 456667789999999999999999999999999998777 46542
Q ss_pred ccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcc
Q psy8077 100 RPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKST 179 (223)
Q Consensus 100 ~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D 179 (223)
+.+++++++||.+++.+.+++|||+|+|+|||.||||+||||||||||++|++++.++..+..||+.|+.||
T Consensus 45 --------~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIArAL~~~~~k~~d~~~r~~Lk~~~~~yd 116 (146)
T 2zkq_i 45 --------RTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYD 116 (146)
T ss_dssp --------TSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHHHHHHHHHHHHHHHHCTTCTTSSSCCCCCSCSSSCC
T ss_pred --------HHHHHHHHHHHHHhCccccCceEEEEEEEcCCeehHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcC
Confidence 345667888888888655799999999999999999999999999999999555544444556777888888
Q ss_pred ccccccc-------cCCCcceeEEEecCcc
Q psy8077 180 LTLLGKD-------KFAGVDIRVRVNGGGH 202 (223)
Q Consensus 180 ~~lL~rD-------K~G~~kARk~~Q~sKR 202 (223)
++||+|| |||++|||++||||||
T Consensus 117 rglLtrD~R~~ErKK~G~~kARk~~Q~SkR 146 (146)
T 2zkq_i 117 RTLLVADPRRCESKKFGGPGARARYQKSYR 146 (146)
T ss_dssp CCCC-CCCCCCCCCCTTSTTSSCCCCCSCC
T ss_pred CCcccCCCcccccCcCCCcccccccccccC
Confidence 8888888 9999999999999998
No 4
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=100.00 E-value=5.7e-47 Score=303.96 Aligned_cols=125 Identities=22% Similarity=0.325 Sum_probs=112.7
Q ss_pred EEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCcH
Q psy8077 29 VQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPK 108 (223)
Q Consensus 29 ~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~ 108 (223)
++++||||||+|||||.||+|+|+|||+|+++||+. +
T Consensus 4 ~~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~~-------------------------------------------~ 40 (128)
T 2vqe_I 4 YYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQG-------------------------------------------L 40 (128)
T ss_dssp EEECCEETTEEEEEEEEESSCCEEESSSBHHHHSSS-------------------------------------------C
T ss_pred cEEeCcCCCEEEEEEEEcCceEEEECCCcHHHHcCC-------------------------------------------H
Confidence 589999999999999999999999888777777642 3
Q ss_pred HHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhccccccccccC
Q psy8077 109 LLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKF 188 (223)
Q Consensus 109 ~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~ 188 (223)
.+++++++||.+++. +++|||.|+|+|||.||||+||||||||||++|||++++.|++. .|++.|++..||+||
T Consensus 41 ~~r~~v~~Pl~~~~~--~~~~Di~v~V~GGG~sgQA~AiR~gIarAL~~~~~~~r~~Lk~~----glLtrD~R~~ErKK~ 114 (128)
T 2vqe_I 41 VRAVAALEPLRAVDA--LGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPL----GFLTRDARVVERKKY 114 (128)
T ss_dssp SSGGGGGHHHHHHTC--STTEEEEEEEESSCHHHHHHHHHHHHHHHHHHHCGGGHHHHTTT----TTTSCBCCCCCCCCS
T ss_pred HHHHHHHhHHHHHcc--cCceeEEEEEEcCCeehHHHHHHHHHHHHHHHHCHHHHHHHHHC----CCccCCccccCcCcC
Confidence 456678888888887 59999999999999999999999999999999999999888775 689999999999999
Q ss_pred CCcceeEEEecCcc
Q psy8077 189 AGVDIRVRVNGGGH 202 (223)
Q Consensus 189 G~~kARk~~Q~sKR 202 (223)
|++|||++||||||
T Consensus 115 G~~kARk~~Q~SkR 128 (128)
T 2vqe_I 115 GKHKARRAPQYSKR 128 (128)
T ss_dssp SSSBTTBCCCCCCC
T ss_pred CCcccccccccccC
Confidence 99999999999998
No 5
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=100.00 E-value=3.7e-47 Score=304.68 Aligned_cols=126 Identities=24% Similarity=0.332 Sum_probs=111.6
Q ss_pred eEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCc
Q psy8077 28 SVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEP 107 (223)
Q Consensus 28 ~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~ 107 (223)
.++++||||||+|||||.||+|+|+|||+|+++|||.
T Consensus 2 ~~~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~~------------------------------------------- 38 (127)
T 3r8n_I 2 QYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGR------------------------------------------- 38 (127)
T ss_dssp CEEECCCCTTCEEEEEEEESCSCEEETTBCSTTTTTT-------------------------------------------
T ss_pred cceeECCCeeEEEEEEEEeCcEEEEECCEeHHHHcCC-------------------------------------------
Confidence 4689999999999999999999999888777777652
Q ss_pred HHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccccccccc
Q psy8077 108 KLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDK 187 (223)
Q Consensus 108 ~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK 187 (223)
+.++++|++||.+++. +++|||+|+|+|||+||||+||||||||||++|||++++.|++. .|++.|++..||+|
T Consensus 39 ~~~r~~v~~Pl~~~~~--~~~~Di~v~V~GGG~~gQa~Air~aIarAL~~~d~~~r~~Lk~~----glLtrD~R~~ErKK 112 (127)
T 3r8n_I 39 ETARMVVRQPLELVDM--VEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKA----GFVTRDARQVERKK 112 (127)
T ss_dssp STTTTTTTGGGSSSCC--SSSEEEEEEEESSCHHHHHHHHHHHHHTTTTTTCSSSTTTTTTT----TTTSCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHhCc--cCccceEEEEECCCeecHHHHHHHHHHHHHHHHCHHHHHHHHHC----CCcccCCcccccCc
Confidence 3345566667777775 58999999999999999999999999999999999999888774 68899999999999
Q ss_pred CCCcceeEEEecCcc
Q psy8077 188 FAGVDIRVRVNGGGH 202 (223)
Q Consensus 188 ~G~~kARk~~Q~sKR 202 (223)
||++|||++||||||
T Consensus 113 ~G~~kARk~~Q~SkR 127 (127)
T 3r8n_I 113 VGLRKARRRPQFSKR 127 (127)
T ss_dssp TTSSBTTBCCCCCCC
T ss_pred CCCccccccccccCC
Confidence 999999999999998
No 6
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.6e-45 Score=296.74 Aligned_cols=130 Identities=31% Similarity=0.521 Sum_probs=102.3
Q ss_pred ceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccC
Q psy8077 27 KSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIE 106 (223)
Q Consensus 27 ~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf 106 (223)
++++++||||||+|||||+||+|+|+|||+|+|+||++
T Consensus 2 ~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~------------------------------------------ 39 (135)
T 3j20_K 2 RIIQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPE------------------------------------------ 39 (135)
T ss_dssp CCEEEEEEETTEEEEEEEEESSCCEEETTEEGGGCSCS------------------------------------------
T ss_pred cEEEEeCcCccEEEEEEEEeCceEEEECCeeHHHHChH------------------------------------------
Confidence 47899999999999999999999999998777766544
Q ss_pred cHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhc--hhhhhhchhhhhhhhhhhccccccc
Q psy8077 107 PKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY--QKCKQATGLLGTEKMLVKSTLTLLG 184 (223)
Q Consensus 107 ~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~--~~~~~~~~~~~lk~~l~~~D~~lL~ 184 (223)
.+++++++||.+++.+.+++|||+|+|+|||+||||+||||||||||++|+ +++++.|++. -..|++.|++..|
T Consensus 40 --~~r~~i~~Pl~l~~~~~~~~~Di~v~V~GGG~~gQA~AiR~aIarAL~~~~~~~~lr~~l~~~--d~glLtrD~R~~E 115 (135)
T 3j20_K 40 --IARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAIARALVEWTGDMSLKEKFMKY--DRTMLVGDPRRTE 115 (135)
T ss_dssp --HHHHHHSHHHHHHCHHHHHHEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--CSTTTCCCSCCCC
T ss_pred --HHHHHhhCChhhcchhhcccccEEEEEECCCEechHhHHHHHHHHHHHHhccCHHHHHHHHhc--cCCCccCCCcccc
Confidence 455566666666662225899999999999999999999999999999996 4554432220 0135555666666
Q ss_pred cccCCC--cceeEEEecCcc
Q psy8077 185 KDKFAG--VDIRVRVNGGGH 202 (223)
Q Consensus 185 rDK~G~--~kARk~~Q~sKR 202 (223)
|+|||+ +|||++||||||
T Consensus 116 rKK~G~~~~kARk~~Q~SkR 135 (135)
T 3j20_K 116 PHKPNRSTKGPRAKRQKSYR 135 (135)
T ss_dssp CCCCCSSCSSSSCCCCCCCC
T ss_pred ccccCCCCCCCccccccccC
Confidence 669999 999999999998
No 7
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.1e-45 Score=310.05 Aligned_cols=136 Identities=22% Similarity=0.238 Sum_probs=113.5
Q ss_pred CCCCccccceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEc
Q psy8077 19 RKPPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVD 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VN 98 (223)
+++.....+.++++||||||+|||||+||+|+|+|||+|+++||+..
T Consensus 62 ~~~~~~~~~~~~~tGRRKtAvArV~l~~G~G~I~VNg~~l~~YF~~~--------------------------------- 108 (197)
T 3bbn_I 62 RLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGN--------------------------------- 108 (197)
T ss_dssp ---------CBCCCCEETTEEEEEEEEESSCCEEETTEEHHHHSCSC---------------------------------
T ss_pred hcccccCccEEEEEeeCCceEEEEEEEcCceeEEECCCcHHHHcCcc---------------------------------
Confidence 34444455677899999999999999999999999998888887520
Q ss_pred CccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhc
Q psy8077 99 GRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKS 178 (223)
Q Consensus 99 g~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~ 178 (223)
+..+++|++||.+++.+ ++|||+|+|+|||.||||+||||||||||+.||+++++.|++. .|++.
T Consensus 109 ---------~~~~~~v~~PL~l~~~~--~k~DI~v~V~GGG~sGQA~AIR~gIARALv~~~~~~r~~LK~~----GlLTr 173 (197)
T 3bbn_I 109 ---------PLWLQYVKTPLATLGYE--TNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQE----GLLTR 173 (197)
T ss_dssp ---------CGGGTTTSHHHHTTTCT--TTEEEEEEEESSCHHHHHHHHHHHHHHHTTTSCGGGSHHHHTT----TCSSC
T ss_pred ---------HHHHHHHHHHHHHhCcc--CceeEEEEEecCCeehHHHHHHHHHHHHHHHHCHHHHHHHHHC----CCccC
Confidence 12335788899999874 8999999999999999999999999999999999998887764 68899
Q ss_pred cccccccccCCCcceeEEEecCcc
Q psy8077 179 TLTLLGKDKFAGVDIRVRVNGGGH 202 (223)
Q Consensus 179 D~~lL~rDK~G~~kARk~~Q~sKR 202 (223)
|++..||+|||++|||++||||||
T Consensus 174 D~R~~ERKK~G~kkARk~~Q~SKR 197 (197)
T 3bbn_I 174 DSRIVERKKPGLKKARKAPQFSKR 197 (197)
T ss_dssp CCCCCCCCCTTSSSTTCCCCCCCC
T ss_pred CCcccccCcCCcccccccccccCC
Confidence 999999999999999999999998
No 8
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.3e-48 Score=318.17 Aligned_cols=134 Identities=48% Similarity=0.800 Sum_probs=102.2
Q ss_pred ccceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccc
Q psy8077 25 AIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEM 104 (223)
Q Consensus 25 ~~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~ 104 (223)
..++++++||||||+|||||+||+|+|+|||+|+++|||+.
T Consensus 9 ~~~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~~--------------------------------------- 49 (149)
T 3iz6_I 9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEM--------------------------------------- 49 (149)
T ss_dssp ---------------CCCCCCCCCCSSSEECCCCCCSSCCE---------------------------------------
T ss_pred CccEEEEeccCcceEEEEEEEeCcEEEEECCCcHHHHChHH---------------------------------------
Confidence 44689999999999999999999999988887777776543
Q ss_pred cCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhccccccc
Q psy8077 105 IEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLG 184 (223)
Q Consensus 105 Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~ 184 (223)
+++++++||.+++.+.+++|||+|+|+|||+||||+||||||||||++|++++.|+..+.+||+.|+.||++||+
T Consensus 50 -----~r~~v~~Pl~l~~~~~~~~~DI~v~V~GGG~sgQA~AiR~gIArALv~~~~~~vd~~~r~~LK~~l~~yD~glLt 124 (149)
T 3iz6_I 50 -----LRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLV 124 (149)
T ss_dssp -----EESSSBHHHHTCSCHHHHHHHTTTTTTSCSTTCCEEECEESSCTTTHHHHHHHHHHHHHHHHCSSTHHHHTTTCC
T ss_pred -----HHHHHHHHHHHHhHhccCceeEEEEEeCCCeecHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCc
Confidence 344566677777765468999999999999999999999999999999988777766677888888888888888
Q ss_pred cc-------cCCCcceeEEEecCcc
Q psy8077 185 KD-------KFAGVDIRVRVNGGGH 202 (223)
Q Consensus 185 rD-------K~G~~kARk~~Q~sKR 202 (223)
|| |||++|||++||||||
T Consensus 125 rD~R~~ERKK~G~~kARk~~Q~SkR 149 (149)
T 3iz6_I 125 ADPRRCEPKKFGGRGARARFQKSYR 149 (149)
T ss_dssp CCCCCCSCCCCCTTBSSSSSBCSCC
T ss_pred CCCcccccCCCCCcccccccccccC
Confidence 88 9999999999999998
No 9
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=99.35 E-value=7e-13 Score=106.18 Aligned_cols=83 Identities=29% Similarity=0.428 Sum_probs=60.8
Q ss_pred hhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHH
Q psy8077 76 LLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKA 154 (223)
Q Consensus 76 ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARa 154 (223)
.+| +|+|+|+|++.+|+|+|+|||+|+++| + ..+. ..
T Consensus 6 ~~GrRKtavArv~l~~G~G~i~VNg~~l~~y--------------f-~~~~-~r-------------------------- 43 (128)
T 2vqe_I 6 GTGRRKEAVARVFLRPGNGKVTVNGQDFNEY--------------F-QGLV-RA-------------------------- 43 (128)
T ss_dssp ECCEETTEEEEEEEEESSCCEEESSSBHHHH--------------S-SSCS-SG--------------------------
T ss_pred EeCcCCCEEEEEEEEcCceEEEECCCcHHHH--------------c-CCHH-HH--------------------------
Confidence 456 799999999999999999999998765 2 1110 00
Q ss_pred HHHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhh
Q psy8077 155 LVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY 221 (223)
Q Consensus 155 L~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~ 221 (223)
..+.. + |+.-+..+.-.........+.++||+|||||||||||.|+
T Consensus 44 --------------~~v~~------P-l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~gIarAL~~~~ 89 (128)
T 2vqe_I 44 --------------VAALE------P-LRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYN 89 (128)
T ss_dssp --------------GGGGH------H-HHHHTCSTTEEEEEEEESSCHHHHHHHHHHHHHHHHHHHC
T ss_pred --------------HHHHh------H-HHHHcccCceeEEEEEEcCCeehHHHHHHHHHHHHHHHHC
Confidence 00000 1 1112345666788888999999999999999999999985
No 10
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=99.34 E-value=1.1e-12 Score=104.84 Aligned_cols=82 Identities=30% Similarity=0.454 Sum_probs=62.1
Q ss_pred hc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHH
Q psy8077 77 LG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKAL 155 (223)
Q Consensus 77 tG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL 155 (223)
+| +|+|+|+|++.+|+|+|+|||+|+++| +-...
T Consensus 6 ~GrRKtavArv~l~~G~G~i~VNg~~l~~y--------------f~~~~------------------------------- 40 (127)
T 3r8n_I 6 TGRRKSSAARVFIKPGNGKIVINQRSLEQY--------------FGRET------------------------------- 40 (127)
T ss_dssp CCCCTTCEEEEEEEESCSCEEETTBCSTTT--------------TTTST-------------------------------
T ss_pred ECCCeeEEEEEEEEeCcEEEEECCEeHHHH--------------cCCHH-------------------------------
Confidence 56 799999999999999999999999877 11110
Q ss_pred HHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhh
Q psy8077 156 VAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY 221 (223)
Q Consensus 156 ~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~ 221 (223)
++ ..++. + |+.-+..+.-.-.......+.++||+|||||||+|||.|.
T Consensus 41 ------~r---------~~v~~--P-l~~~~~~~~~Di~v~V~GGG~~gQa~Air~aIarAL~~~d 88 (127)
T 3r8n_I 41 ------AR---------MVVRQ--P-LELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYD 88 (127)
T ss_dssp ------TT---------TTTTG--G-GSSSCCSSSEEEEEEEESSCHHHHHHHHHHHHHTTTTTTC
T ss_pred ------HH---------HHHHH--H-HHHhCccCccceEEEEECCCeecHHHHHHHHHHHHHHHHC
Confidence 00 00000 1 2223466777888999999999999999999999999985
No 11
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=99.33 E-value=3.7e-13 Score=109.77 Aligned_cols=87 Identities=41% Similarity=0.721 Sum_probs=59.2
Q ss_pred hhhhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHH
Q psy8077 74 ILLLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAIS 152 (223)
Q Consensus 74 L~ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIA 152 (223)
...+| +|+|+|+|++++|+|+|+|||+|++ | + ..+ ..++-|-
T Consensus 9 ~~~~GrRKtAvArv~l~~G~G~i~VNg~~l~-y--------------f-~~~---------------------~~r~~v~ 51 (145)
T 2xzm_I 9 VQTFGRKKNAVAVASVRPGKGLLKVNGSPID-M--------------I-NPQ---------------------ILQAKIY 51 (145)
T ss_dssp EEEEEEETTEEEEEEEEESSCEEEESSSBGG-G--------------C-SST---------------------TTHHHHH
T ss_pred EEEEeECCCEEEEEEEEeCceEEEECCEeHH-H--------------c-CcH---------------------HHHHHHH
Confidence 44567 7999999999999999999999987 5 2 111 1111111
Q ss_pred HHHHHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhhc
Q psy8077 153 KALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQ 222 (223)
Q Consensus 153 RaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~~ 222 (223)
.-|...+ .|..+.-..+......+.++||+|||||||||||.||+
T Consensus 52 ~Pl~l~~-------------------------~~~~~~~Di~v~V~GGG~sgQA~AiR~aIArAL~~~~~ 96 (145)
T 2xzm_I 52 EPILLLG-------------------------QQKFANLDIRIRVRGSGYTSQVYAIRQALSKGIVAYHA 96 (145)
T ss_dssp HHHHHHC-------------------------HHHHHHEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-------------------------hhhhCceeEEEEEEcCCeecHHHHHHHHHHHHHHHHhh
Confidence 1111111 11222334566677889999999999999999999974
No 12
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.32 E-value=1.2e-12 Score=106.98 Aligned_cols=88 Identities=60% Similarity=0.955 Sum_probs=63.1
Q ss_pred hhhhhhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHH
Q psy8077 72 EPILLLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQA 150 (223)
Q Consensus 72 ~PL~ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~a 150 (223)
.....+| +|+|+|+|++.+|+|+|+|||+|+ +| + ..+. ..
T Consensus 8 ~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~l-ey--------------f-~~~~-~r---------------------- 48 (146)
T 2zkq_i 8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPL-EM--------------I-EPRT-LQ---------------------- 48 (146)
T ss_dssp CCEEECCBCSSCEEEEEEEESSSCEEETTEEH-HH--------------H-STTS-CC----------------------
T ss_pred ceEEEEeeCCCeEEEEEEEcCCeeEEEcCcCH-HH--------------c-CcHH-HH----------------------
Confidence 3345567 799999999999999999999997 44 1 1110 00
Q ss_pred HHHHHHHhchhhhhhchhhhhhhhhhhcccc-ccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhhc
Q psy8077 151 ISKALVAYYQKCKQATGLLGTEKMLVKSTLT-LLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQ 222 (223)
Q Consensus 151 IARaL~~~~~~~~~~~~~~~lk~~l~~~D~~-lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~~ 222 (223)
..+.. +- ++..+.++.-.........+.++||+|||||||||||.||+
T Consensus 49 ------------------~~v~~------Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIArAL~~~~~ 97 (146)
T 2zkq_i 49 ------------------YKLLE------PVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQ 97 (146)
T ss_dssp ------------------GGGGH------HHHHTSSCTTSSEEEEEEEESSCHHHHHHHHHHHHHHHHHHHCT
T ss_pred ------------------HHHHH------HHHHhCccccCceEEEEEEEcCCeehHHHHHHHHHHHHHHHHhh
Confidence 00000 11 12223466778888899999999999999999999999965
No 13
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.30 E-value=1.6e-12 Score=110.36 Aligned_cols=104 Identities=22% Similarity=0.216 Sum_probs=62.5
Q ss_pred ccccccCcHHHHHHHh-hhhhhhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEE
Q psy8077 56 RPLEMIEPKLLQYKLQ-EPILLLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRV 133 (223)
Q Consensus 56 ~p~e~yf~~~~r~~i~-~PL~ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i 133 (223)
..++.|....+...+. .....+| ||+|+|+|++++|+|+|+|||+|+++|| . .+
T Consensus 53 ~~l~~~~k~~~~~~~~~~~~~~tGRRKtAvArV~l~~G~G~I~VNg~~l~~YF-~--------------~~--------- 108 (197)
T 3bbn_I 53 ADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYL-Q--------------GN--------- 108 (197)
T ss_dssp ------------------CBCCCCEETTEEEEEEEEESSCCEEETTEEHHHHS-C--------------SC---------
T ss_pred HHHHHHHHHhcccccCccEEEEEeeCCceEEEEEEEcCceeEEECCCcHHHHc-C--------------cc---------
Confidence 3566776532222222 2234467 7999999999999999999999999887 1 00
Q ss_pred EecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHH
Q psy8077 134 RVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAI 213 (223)
Q Consensus 134 ~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~ 213 (223)
+.+.. .+.. + |+.-+..|...........+-++||+||||||
T Consensus 109 --------------------------~~~~~-----~v~~------P-L~l~~~~~k~DI~v~V~GGG~sGQA~AIR~gI 150 (197)
T 3bbn_I 109 --------------------------PLWLQ-----YVKT------P-LATLGYETNYDVFVKAHGGGLSGQAQAISLGV 150 (197)
T ss_dssp --------------------------CGGGT-----TTSH------H-HHTTTCTTTEEEEEEEESSCHHHHHHHHHHHH
T ss_pred --------------------------HHHHH-----HHHH------H-HHHhCccCceeEEEEEecCCeehHHHHHHHHH
Confidence 00000 0000 0 11122345557788889999999999999999
Q ss_pred HHHHHhhh
Q psy8077 214 SKALVAYY 221 (223)
Q Consensus 214 ~~~~v~~~ 221 (223)
|||||.|+
T Consensus 151 ARALv~~~ 158 (197)
T 3bbn_I 151 ARALLKVS 158 (197)
T ss_dssp HHHTTTSC
T ss_pred HHHHHHHC
Confidence 99999986
No 14
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=98.61 E-value=3.2e-08 Score=80.50 Aligned_cols=89 Identities=55% Similarity=0.864 Sum_probs=63.3
Q ss_pred hhhhhhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHH
Q psy8077 72 EPILLLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQA 150 (223)
Q Consensus 72 ~PL~ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~a 150 (223)
++...+| +|+|+|+|++++|+|+|+|||+|+++ .+| .. .|.-
T Consensus 5 ~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~----------y~~----~~-----------------------~r~~ 47 (143)
T 3u5c_Q 5 PSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITL----------VEP----EI-----------------------LRFK 47 (143)
T ss_dssp CEEEEEECSTTCEEEEEEEECSCCEEETTEETTT----------CSS----CS-----------------------THHH
T ss_pred ceEEEeccCcceEEEEEEEeCceEEEECCCcHHH----------HCh----HH-----------------------HHHH
Confidence 3455677 79999999999999999999999761 111 00 0000
Q ss_pred HHHHHHHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhhc
Q psy8077 151 ISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQ 222 (223)
Q Consensus 151 IARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~~ 222 (223)
|-. | --++..+.++.-.-.......+-++||+|||||||||||.||+
T Consensus 48 v~~------P-------------------l~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIArAL~~~~~ 94 (143)
T 3u5c_Q 48 VYE------P-------------------LLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQ 94 (143)
T ss_dssp HHH------H-------------------HHHTCSTTSTTEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------H-------------------HHHHhhhccCceeEEEEEECCCEecHHhHHHHHHHHHHHHHhh
Confidence 000 0 0122234566778888889999999999999999999999964
No 15
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.45 E-value=5.3e-08 Score=78.49 Aligned_cols=86 Identities=41% Similarity=0.645 Sum_probs=58.3
Q ss_pred hhhc-ccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHH
Q psy8077 75 LLLG-TKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISK 153 (223)
Q Consensus 75 ~ltG-rKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIAR 153 (223)
..+| +|+|+|+|++++|+|+|+|||+|+++| .| + ..+.-|-.
T Consensus 5 ~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y----------~~------~---------------------~~r~~i~~ 47 (135)
T 3j20_K 5 QTTGKRKTAIARAVIREGKGRVRINGKPVEII----------EP------E---------------------IARFTILE 47 (135)
T ss_dssp EEEEEETTEEEEEEEEESSCCEEETTEEGGGC----------SC------S---------------------HHHHHHSH
T ss_pred EEeCcCccEEEEEEEEeCceEEEECCeeHHHH----------Ch------H---------------------HHHHHhhC
Confidence 3467 799999999999999999999999754 11 0 11111111
Q ss_pred HHHHhchhhhhhchhhhhhhhhhhccccccccccCCCcceeEEEecCcchhhhHHHHHHHHHHHHhhhc
Q psy8077 154 ALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQ 222 (223)
Q Consensus 154 aL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK~G~~kARk~~Q~sKR~~~~~a~r~~~~~~~v~~~~ 222 (223)
-|.... .|..+.-.........+-++||+|||||||||||.|+.
T Consensus 48 Pl~l~~-------------------------~~~~~~~Di~v~V~GGG~~gQA~AiR~aIarAL~~~~~ 91 (135)
T 3j20_K 48 PLILAG-------------------------EEIWNSVDIDVKVEGGGFMGQAEAARMAIARALVEWTG 91 (135)
T ss_dssp HHHHHC-------------------------HHHHHHEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred Chhhcc-------------------------hhhcccccEEEEEECCCEechHhHHHHHHHHHHHHhcc
Confidence 111111 01222234566678889999999999999999999974
No 16
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.56 E-value=0.0029 Score=51.53 Aligned_cols=68 Identities=29% Similarity=0.291 Sum_probs=30.3
Q ss_pred chhhhhhhcCCCCccccceEE-eeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhccc--ccceeE
Q psy8077 10 AIKSVQVFGRKPPKVAIKSVQ-VFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTK--SATAVA 86 (223)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrK--ta~A~v 86 (223)
..+++|.||++....+.-.+. ++|.= . .+|.-.-..+. + +..+ ++++||.++|.+ ..++..
T Consensus 9 ~~~~v~~~GrRKtAvArv~l~~G~G~i-------~-VNg~~l~~y~~---~-~~r~----~v~~Pl~l~~~~~~~~~DI~ 72 (149)
T 3iz6_I 9 PPGTVQCFGRKKTAVAVSYCKPGRGLI-------K-VNGVPIELIRP---E-MLRL----KAFEPILLAGRSRFKDIDMR 72 (149)
T ss_dssp ---------------CCCCCCCCCCSS-------S-EECCCCCCSSC---C-EEES----SSBHHHHTCSCHHHHHHHTT
T ss_pred CccEEEEeccCcceEEEEEEEeCcEEE-------E-ECCCcHHHHCh---H-HHHH----HHHHHHHHHhHhccCceeEE
Confidence 347899999999877653332 56641 2 24433211222 2 2222 368999999965 688888
Q ss_pred EEecCcc
Q psy8077 87 YCKEGKG 93 (223)
Q Consensus 87 ~~v~G~G 93 (223)
..+.|+|
T Consensus 73 v~V~GGG 79 (149)
T 3iz6_I 73 IRVRGGG 79 (149)
T ss_dssp TTTTSCS
T ss_pred EEEeCCC
Confidence 8889988
No 17
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=71.69 E-value=1.3 Score=46.37 Aligned_cols=91 Identities=24% Similarity=0.327 Sum_probs=53.4
Q ss_pred cCceeEEEcCccccccCcHHHHHHH----hhhhhhhcccccceeEEEecCcceEEEc---CccccccCcHHHHHHHHhHH
Q psy8077 46 EGKGNLRVDGRPLEMIEPKLLQYKL----QEPILLLGTKSATAVAYCKEGKGNLRVD---GRPLEMIEPKLLQYKLQEPI 118 (223)
Q Consensus 46 ~G~G~i~VNg~p~e~yf~~~~r~~i----~~PL~ltGrKta~A~v~~v~G~G~I~VN---g~pl~~Yf~~~~r~~v~~PL 118 (223)
|-+|.|.|||.|+..+-.+.+|..+ .+|.+..|+ |.=| |.+-.++ ..+++.+-+
T Consensus 1131 p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gT---------------IreNI~~gld~~~~----sd~ei~~Al 1191 (1321)
T 4f4c_A 1131 TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCS---------------IAENIIYGLDPSSV----TMAQVEEAA 1191 (1321)
T ss_dssp CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEE---------------HHHHHSSSSCTTTS----CHHHHHHHH
T ss_pred CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCcc---------------HHHHHhccCCCCCC----CHHHHHHHH
Confidence 5679999999999999877777654 356655542 1111 1111222 122333333
Q ss_pred HHhCCCC-----CceecEEEEecCCCccc-HHHHHHHHHHHHHHH
Q psy8077 119 LLLGKDK-----FAGVDIRVRVNGGGHVA-QIYAIRQAISKALVA 157 (223)
Q Consensus 119 ~~~~~~~-----~~~~DI~i~V~GGG~sg-QA~AIr~aIARaL~~ 157 (223)
...+.+. -+.||-.+--+|..+|| |-+ |.||||||+.
T Consensus 1192 ~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ--riaiARAllr 1234 (1321)
T 4f4c_A 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ--RIAIARALVR 1234 (1321)
T ss_dssp HHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH--HHHHHHHHHS
T ss_pred HHhCChHHHHcCcCCCCCEecCCCcccCHHHHH--HHHHHHHHHh
Confidence 3333210 15688777666666663 544 8999999987
No 18
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=41.33 E-value=48 Score=27.24 Aligned_cols=69 Identities=25% Similarity=0.277 Sum_probs=37.7
Q ss_pred EEEecCcceEEEcCccccccCcHHHHHHHHhHHH----HhCCC--CCceecEEEEecCCCc--ccHHH--HHHHHHHHHH
Q psy8077 86 AYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPIL----LLGKD--KFAGVDIRVRVNGGGH--VAQIY--AIRQAISKAL 155 (223)
Q Consensus 86 v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~----~~~~~--~~~~~DI~i~V~GGG~--sgQA~--AIr~aIARaL 155 (223)
+.+.+|.|.+.+.|.+-+.. . ..++.+..=+. -.+.+ .+...||++++.+|.. .|-+. ||..||.-++
T Consensus 31 ~~~~~G~g~~~itG~~~~~~-k-ES~~~a~s~~~~~~~~~g~~~~~~~~~di~vnl~~g~~~k~GpsadLaia~AilSa~ 108 (200)
T 1rre_A 31 TACVPGKGKLTYTGSLGEVM-Q-ESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCL 108 (200)
T ss_dssp EEEEECSSCEEEESSBCHHH-H-HHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSSTTSCEESSTTHHHHHHHHHHHH
T ss_pred EEEeCCCceEEEecCchHHH-H-HHHHHHHHHHHHhHHhcCCCcccCCcceEEEEeCCccccCCCCcchHHHHHHHHHHc
Confidence 34567999999999763322 1 12333333232 23322 2578999999988754 33332 4444444444
Q ss_pred H
Q psy8077 156 V 156 (223)
Q Consensus 156 ~ 156 (223)
.
T Consensus 109 ~ 109 (200)
T 1rre_A 109 T 109 (200)
T ss_dssp H
T ss_pred C
Confidence 3
No 19
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=37.12 E-value=17 Score=30.63 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=17.0
Q ss_pred ceecEEEEecCCCcccHHHHHHHH
Q psy8077 127 AGVDIRVRVNGGGHVAQIYAIRQA 150 (223)
Q Consensus 127 ~~~DI~i~V~GGG~sgQA~AIr~a 150 (223)
++|||. |=|||++|-+-|+.+|
T Consensus 3 e~yDVi--IVGaGpaGl~~A~~La 24 (397)
T 3oz2_A 3 ETYDVL--VVGGGPGGSTAARYAA 24 (397)
T ss_dssp EEEEEE--EECCSHHHHHHHHHHH
T ss_pred CCCCEE--EECcCHHHHHHHHHHH
Confidence 468865 4699999998887665
No 20
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=36.73 E-value=6.2 Score=29.30 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=30.7
Q ss_pred CceeEEEcCccccccCc-H-HHHHHHhhhhhhhcccccceeEEEecCcc-----eEEEcCcccccc
Q psy8077 47 GKGNLRVDGRPLEMIEP-K-LLQYKLQEPILLLGTKSATAVAYCKEGKG-----NLRVDGRPLEMI 105 (223)
Q Consensus 47 G~G~i~VNg~p~e~yf~-~-~~r~~i~~PL~ltGrKta~A~v~~v~G~G-----~I~VNg~pl~~Y 105 (223)
|+=.|.|||+ +++. + .....-.+||.+-+. ...|.+++.+.+| ...|||+++++|
T Consensus 28 Gkrvi~VDGk---ev~r~~wmfklvGke~F~ig~~-~~k~~I~I~a~~~~~y~YtL~VngKslk~f 89 (90)
T 3mx7_A 28 GKRVVYVDGK---EEIRKEWMFKLVGKETFYVGAA-KTKATINIDAISGFAYEYTLEINGKSLKKY 89 (90)
T ss_dssp CCEEEEETTE---EEEEECCCSCCCEEEEEEETTT-TEEEEEEEEEETTTEEEEEEEETTEEEEEC
T ss_pred ceEEEEECCE---EEEecCCeEEEEeeEeEEECCc-ceEEEEEEEecCCccEEEEEEECCEeHHHc
Confidence 4446889997 3332 1 122223445554432 2345566655433 567999999987
No 21
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens}
Probab=36.52 E-value=34 Score=28.37 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=32.6
Q ss_pred cCcceEEEcCccccccCc--HHHHHHHHh-HHHHhCC-CCCceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 90 EGKGNLRVDGRPLEMIEP--KLLQYKLQE-PILLLGK-DKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 90 ~G~G~I~VNg~pl~~Yf~--~~~r~~v~~-PL~~~~~-~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+|+|.+.+.|.+-+..-- ...+.-+.. .+.+... ..+...||++++.||-.--.--+.=++||-||+.
T Consensus 43 ~g~g~~~itG~~~~~~kES~~~a~s~~~~~~~~~~~~~~~~~~~di~vnl~~g~~~K~GpsadLaia~AilS 114 (207)
T 2x36_A 43 DKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLS 114 (207)
T ss_dssp ---CEEEEESCCCHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHCEEEEECCSCBCTTTGGGGHHHHHHHHHH
T ss_pred CCCCeEEEEeCchHHHHHHHHHHHHHHHhcccccccccccCccceEEEEeCCcccCCCCCcchHHHHHHHHH
Confidence 689999999976443211 111222211 2222111 1256899999998875432222334444444444
No 22
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=34.41 E-value=30 Score=32.33 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=27.0
Q ss_pred ecCcceEEEcCccccccCcHHHH---HHHHhHHHHhCCC--CCceecEEEEecCCC
Q psy8077 89 KEGKGNLRVDGRPLEMIEPKLLQ---YKLQEPILLLGKD--KFAGVDIRVRVNGGG 139 (223)
Q Consensus 89 v~G~G~I~VNg~pl~~Yf~~~~r---~~v~~PL~~~~~~--~~~~~DI~i~V~GGG 139 (223)
.+|.|.+++.|.+-+.. .+..+ ..+..-+.-.+.+ .+..+||++++.||.
T Consensus 377 ~~g~~~~~~~G~~~~~~-~es~~~a~~~v~~~~~~~g~~~~~~~~~di~v~~~~g~ 431 (543)
T 3m6a_A 377 SPGKGKLILTGKLGDVM-RESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVPEGA 431 (543)
T ss_dssp ESSCSCEEEEESCCHHH-HHHHHHHHHHHTSSCGGGSSCSSCTTTCEEEEEECTTB
T ss_pred eCCCCceEEecCchHHH-HHHHHHHHHHHHHHHHHcCCCccccCCcceEEEeCCCC
Confidence 46888888888753211 11111 1122222222321 146889999999984
No 23
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=29.92 E-value=20 Score=37.52 Aligned_cols=93 Identities=24% Similarity=0.272 Sum_probs=52.2
Q ss_pred cCceeEEEcCccccccCcHHHHHHHh----hhhhhhcccccceeEEEecCcceEEEcCccccccCcHHHHHHHHhHHHHh
Q psy8077 46 EGKGNLRVDGRPLEMIEPKLLQYKLQ----EPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLL 121 (223)
Q Consensus 46 ~G~G~i~VNg~p~e~yf~~~~r~~i~----~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~~~~r~~v~~PL~~~ 121 (223)
|-+|.|.|||.|+.++-.+.+|..+- +|.+..|+=.. +|.. |.| .. ..+.+.+-+...
T Consensus 470 ~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~e-----------NI~~-g~~---~~---~~~~v~~a~~~a 531 (1321)
T 4f4c_A 470 VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEE-----------NISL-GKE---GI---TREEMVAACKMA 531 (1321)
T ss_dssp CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHH-----------HHHT-TCT---TC---CHHHHHHHHHHT
T ss_pred cccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhH-----------HHhh-hcc---cc---hHHHHHHHHHHc
Confidence 44689999999999998877776642 44444331000 0000 111 11 122333333333
Q ss_pred CCCC-----CceecEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy8077 122 GKDK-----FAGVDIRVRVNGGGHVAQIYAIRQAISKALVA 157 (223)
Q Consensus 122 ~~~~-----~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~ 157 (223)
+.+. -..||-.+--+|..+||=- -=|.||||||+.
T Consensus 532 ~l~~~i~~lp~G~~T~vGe~G~~LSGGQ-kQRiaiARAl~~ 571 (1321)
T 4f4c_A 532 NAEKFIKTLPNGYNTLVGDRGTQLSGGQ-KQRIAIARALVR 571 (1321)
T ss_dssp TCHHHHHHSTTTTSSEESSSSCCCCHHH-HHHHHHHHHHTT
T ss_pred cchhHHHcCCCCCccEecCCCCCCCHHH-HHHHHHHHHHcc
Confidence 2110 1567877777787777633 349999999986
No 24
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=25.58 E-value=1e+02 Score=24.77 Aligned_cols=13 Identities=8% Similarity=0.266 Sum_probs=11.9
Q ss_pred CceecEEEEecCC
Q psy8077 126 FAGVDIRVRVNGG 138 (223)
Q Consensus 126 ~~~~DI~i~V~GG 138 (223)
+..+||++++.+|
T Consensus 77 ~~~~di~vn~~~g 89 (187)
T 1xhk_A 77 LNNKEIYIQFSQS 89 (187)
T ss_dssp STTEEEEEEESSC
T ss_pred CCCeeEEEEECCC
Confidence 6889999999988
No 25
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=24.77 E-value=27 Score=26.08 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.0
Q ss_pred EEecCCCcccHHHHHHHH
Q psy8077 133 VRVNGGGHVAQIYAIRQA 150 (223)
Q Consensus 133 i~V~GGG~sgQA~AIr~a 150 (223)
|-|=|||++|-+-|+.++
T Consensus 5 V~IIGaGpaGL~aA~~La 22 (336)
T 3kkj_A 5 IAIIGTGIAGLSAAQALT 22 (336)
T ss_dssp EEEECCSHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 566799999999997776
No 26
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=24.61 E-value=38 Score=27.25 Aligned_cols=52 Identities=27% Similarity=0.484 Sum_probs=29.0
Q ss_pred eEEEcCccccc-cCc-HHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccc
Q psy8077 50 NLRVDGRPLEM-IEP-KLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLE 103 (223)
Q Consensus 50 ~i~VNg~p~e~-yf~-~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~ 103 (223)
.++|||++++. ..| +.+...+.+-+-++|.|..-..- .=|.-.+.|||+|..
T Consensus 7 ~~~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G--~CGaCtV~vdG~~v~ 60 (166)
T 1n62_A 7 ELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTS--HCGACTVDLDGMSVK 60 (166)
T ss_dssp EEEETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSS--CSCTTEEEETTEEEE
T ss_pred EEEECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCC--CCCCCEEEECCcEEe
Confidence 48899998864 334 33433344435566666541110 113337899998864
No 27
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=24.03 E-value=30 Score=27.80 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=29.8
Q ss_pred eEEEcCccccc-cCc-HHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccc
Q psy8077 50 NLRVDGRPLEM-IEP-KLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLE 103 (223)
Q Consensus 50 ~i~VNg~p~e~-yf~-~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~ 103 (223)
.++|||++.+. ..| ..+..-+.+-+-++|.|..-..- .=|.=.+.|||+|..
T Consensus 7 ~~~vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G--~CGACtV~vdG~~v~ 60 (160)
T 3hrd_D 7 NLNLNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEG--ECGACTVIFNGDPVT 60 (160)
T ss_dssp EEEETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSS--SSCTTEEEETTEEEE
T ss_pred EEEECCEEEEEecCCCCCHHHHHHHhcCCCccccccCCC--CCCCCEEEECCEEEE
Confidence 48899988764 334 33444444445667766552110 113348999999864
No 28
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=23.85 E-value=80 Score=26.00 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=34.3
Q ss_pred ceEEEcCccccccCcHHHHHHHHhHH-HHhCCCCCceecEEEEecCC--CcccHHH--HHHHHHHHHHH
Q psy8077 93 GNLRVDGRPLEMIEPKLLQYKLQEPI-LLLGKDKFAGVDIRVRVNGG--GHVAQIY--AIRQAISKALV 156 (223)
Q Consensus 93 G~I~VNg~pl~~Yf~~~~r~~v~~PL-~~~~~~~~~~~DI~i~V~GG--G~sgQA~--AIr~aIARaL~ 156 (223)
|.+.+.|.+=+.. ...++.++.-| ...+.+ +..+||++++.+| -..|-+. ||..||.-++.
T Consensus 44 p~~~~~G~~~~~~--~es~~~v~a~l~~~~g~~-~~~~di~vnl~~g~~~k~GpsadLaia~AilSa~~ 109 (207)
T 1z0w_A 44 GRVIATGRLQEIA--REAVMNVSAIIKKYTGRD-ISNMDVHIQFVGTYEGVEGDSASISIATAVISAIE 109 (207)
T ss_dssp CCEECCSTTHHHH--HHHHHHHHHHHHHHHCCC-GGGEEEEEEESSCCTTEECCTTBHHHHHHHHHHHH
T ss_pred CeEEEeCCchhhh--HHHHHHHHHHHHHhcCCC-CCCceEEEEEecccccccCCcchHHHHHHHHHHcC
Confidence 7888888652211 12233344444 345654 7899999999988 2232222 55555555544
No 29
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=22.63 E-value=44 Score=26.79 Aligned_cols=52 Identities=29% Similarity=0.500 Sum_probs=28.7
Q ss_pred eEEEcCccccc-cCc-HHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccc
Q psy8077 50 NLRVDGRPLEM-IEP-KLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLE 103 (223)
Q Consensus 50 ~i~VNg~p~e~-yf~-~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~ 103 (223)
.++|||++++. ..| +.+..-+.+-+-++|.|..-..- .=|.=.+.|||+|..
T Consensus 7 ~~~vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G--~CGaCtV~vdG~~v~ 60 (163)
T 1ffv_A 7 TVNVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETS--HCGACTVDIDGRSVK 60 (163)
T ss_dssp EEEETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSS--CSCTTEEEETTEEEE
T ss_pred EEEECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCC--CCCCCEEEECCcEec
Confidence 47899998864 334 33333333335566665531110 113347899998764
No 30
>2xr4_A Lectin; sugar binding protein, LUNG, pathogen; 1.90A {Burkholderia cenocepacia}
Probab=20.32 E-value=67 Score=24.77 Aligned_cols=49 Identities=22% Similarity=0.443 Sum_probs=27.4
Q ss_pred hhhhhhcCCCCccccceEEeeceeeeEEEEEEEEcCceeEEE----cCcccccc
Q psy8077 12 KSVQVFGRKPPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRV----DGRPLEMI 61 (223)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~tGrRKtAvArv~l~~G~G~i~V----Ng~p~e~y 61 (223)
|.|+||=-..+..+. ...+.|-+=.-.+--.+.+|+|+|+| ||||-.+-
T Consensus 27 QtikvyIdd~~~~~a-T~~g~gt~d~~~~t~~lnSg~GkVriev~~nGkps~l~ 79 (116)
T 2xr4_A 27 QTIDIYIDDDPKPAA-TFKGAGAQDQNLGTKVLDSGNGRVRVIVMANGRPSRLG 79 (116)
T ss_dssp CEEEEEETTCSSCSE-EECCCSSTTEEEEEEEEECTTSEEEEEEEETTEECEEE
T ss_pred eeEEEEeCCCCccce-eeeccCcCCCccceEEEecCCCeEEEEEEeCCccccce
Confidence 556666544222221 23344443333444468899998765 99987654
No 31
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=20.00 E-value=54 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=18.0
Q ss_pred eecEEEEecCCCcccHHHHHHHH
Q psy8077 128 GVDIRVRVNGGGHVAQIYAIRQA 150 (223)
Q Consensus 128 ~~DI~i~V~GGG~sgQA~AIr~a 150 (223)
++|.++.|=|||+.|-+-|++++
T Consensus 4 e~~yDvvIIG~GpAGl~aA~~l~ 26 (312)
T 4gcm_A 4 EIDFDIAIIGAGPAGMTAAVYAS 26 (312)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHH
Confidence 45556677799999998888775
Done!