RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8077
         (223 letters)



>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
           thermophilus [TaxId: 274]}
          Length = 127

 Score = 69.2 bits (169), Expect = 7e-16
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 80  KSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGG 139
           K A A  + + G G + V+G+        L++       L    D     D  + V GGG
Sbjct: 10  KEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLR-AVDALGRFDAYITVRGGG 68

Query: 140 HVAQIYAIRQAISKALVAYYQKCKQA 165
              QI AI+  I++ALV Y    +  
Sbjct: 69  KSGQIDAIKLGIARALVQYNPDYRAK 94



 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 181 TLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK 223
            L   D     D  + V GGG   QI AI+  I++ALV Y   
Sbjct: 48  PLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPD 90


>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score = 66.8 bits (163), Expect = 6e-15
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 80  KSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGG 139
           KS+ A  + K G G + ++ R LE    +     +    L L  D    +D+ + V GGG
Sbjct: 9   KSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELV-DMVEKLDLYITVKGGG 67

Query: 140 HVAQIYAIRQAISKALVAYYQKCKQA 165
              Q  AIR  I++AL+ Y +  +  
Sbjct: 68  ISGQAGAIRHGITRALMEYDESLRSE 93



 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 177 KSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAY 220
                L   D    +D+ + V GGG   Q  AIR  I++AL+ Y
Sbjct: 43  VVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEY 86


>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
           bifunctional purine biosynthesis enzyme ATIC {Chicken
           (Gallus gallus) [TaxId: 9031]}
          Length = 393

 Score = 26.8 bits (58), Expect = 2.1
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 6/43 (13%)

Query: 174 MLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKA 216
              +S      KD       +V   G G  ++I+  R A  KA
Sbjct: 227 KYTQSNSVCYAKDG------QVIGIGAGQQSRIHCTRLAGDKA 263


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 777,705
Number of extensions: 35067
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 7
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)